BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-000389 HI0410  transcriptional regulatory protein
(tyrR)
         (318 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-000389 HI0410  transcriptional regulatory protein (t...   629   0.0  

>HINF-KW2-01-000389 HI0410  transcriptional regulatory protein
           (tyrR)
          Length = 318

 Score =  629 bits (1621), Expect = 0.0
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MTISKFNPQKPFECFIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQS 60
           MTISKFNPQKPFECFIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQS
Sbjct: 1   MTISKFNPQKPFECFIVQSEAMKSAVENAKRFAMFDAPLLIQGETGSGKDLLAKACHYQS 60

Query: 61  LRRDKKFIAVNCAGLPDEDAESEMFGRKVGDSETIGFFEYANKGTVLLDGIAELSLSLQA 120
           LRRDKKFIAVNCAGLPDEDAESEMFGRKVGDSETIGFFEYANKGTVLLDGIAELSLSLQA
Sbjct: 61  LRRDKKFIAVNCAGLPDEDAESEMFGRKVGDSETIGFFEYANKGTVLLDGIAELSLSLQA 120

Query: 121 KLLRFLTDGSFRRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPA 180
           KLLRFLTDGSFRRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPA
Sbjct: 121 KLLRFLTDGSFRRVGEEKEHYANVRVICTSQVPLHLLVEQGKVRADLFHRLNVLTINVPA 180

Query: 181 LRDRMADIEPLAQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSL 240
           LRDRMADIEPLAQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSL
Sbjct: 181 LRDRMADIEPLAQGFLQEISEELKIAKPTFDKDFLLYLQKYDWKGNVRELYNTLYRACSL 240

Query: 241 VQDNHLTIESLNLALPQSAVISLDEFENKTLDEIIGFYEAQVLKLFYAEYPSTRKLAQRL 300
           VQDNHLTIESLNLALPQSAVISLDEFENKTLDEIIGFYEAQVLKLFYAEYPSTRKLAQRL
Sbjct: 241 VQDNHLTIESLNLALPQSAVISLDEFENKTLDEIIGFYEAQVLKLFYAEYPSTRKLAQRL 300

Query: 301 GVSHTAIANKLKQYGIGK 318
           GVSHTAIANKLKQYGIGK
Sbjct: 301 GVSHTAIANKLKQYGIGK 318


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,465
Number of Sequences: 78
Number of extensions: 1142
Number of successful extensions: 5
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 1
length of query: 318
length of database: 48,235
effective HSP length: 63
effective length of query: 255
effective length of database: 43,321
effective search space: 11046855
effective search space used: 11046855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
protein (narP)
         (208 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...   396   e-113
SYNE-PCC-01-001575 slr0312                                            137   3e-35
SYNE-PCC-01-001160 sll1708                                            125   1e-31
SYNE-PCC-01-000608 sll0921                                            124   2e-31
SYNE-PCC-01-001075 sll1592                                            102   1e-24
SYNE-PCC-01-002731 slr1909                                             75   2e-16
SYNE-PCC-01-001039 sll1544                                             70   5e-15
SYNE-PCC-01-002635 slr1783                                             65   2e-13
SYNE-PCC-01-002672 slr1837                                             60   7e-12
SYNE-PCC-01-002486 slr1584                                             60   7e-12
SYNE-PCC-01-001306 sll1905                                             57   3e-11
SYNE-PCC-01-002489 slr1588                                             57   5e-11
SYNE-PCC-01-001461 slr0115                                             55   1e-10
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    55   1e-10
SYNE-PCC-01-000242 sll0396                                             54   4e-10
SYNE-PCC-01-000800 sll1228                                             52   2e-09
SYNE-PCC-01-002033 slr0947                                             51   2e-09
SYNE-PCC-01-000414 sll0649                                             51   3e-09
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   50   6e-09
SYNE-PCC-01-002951 ssl0564                                             49   9e-09
SYNE-PCC-01-001437 slr0081                                             49   2e-08
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    46   8e-08
SYNE-PCC-01-000511 sll0782                                             45   1e-07
SYNE-PCC-01-000518 sll0789                                             45   2e-07
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    44   3e-07
SYNE-PCC-01-002879 slr2104                                             44   4e-07
SYNE-PCC-01-002618 slr1760                                             44   4e-07
SYNE-PCC-01-000523 sll0797                                             44   5e-07
SYNE-PCC-01-002221 slr1213                                             43   9e-07
SYNE-PCC-01-002086 slr1042                                             43   9e-07
SYNE-PCC-01-002617 slr1759                                             41   3e-06

>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score =  396 bits (1018), Expect = e-113
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM 60
           MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM
Sbjct: 1   MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM 60

Query: 61  KGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR 120
           KGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR
Sbjct: 61  KGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR 120

Query: 121 IAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETV 180
           IAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETV
Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETV 180

Query: 181 KVHIRNLLRKLNVHSRVAATVLFFEQNR 208
           KVHIRNLLRKLNVHSRVAATVLFFEQNR
Sbjct: 181 KVHIRNLLRKLNVHSRVAATVLFFEQNR 208


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score =  137 bits (345), Expect = 3e-35
 Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64
           ++VL+ DDH + R+G+  ++  D + +V+A   +G + I++  +  PDV ++DL M  + 
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66

Query: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124
           G+  +  + A    ARI++LT  D+  DIY  + AGA GYLLK+TEPD LL  I+ + +G
Sbjct: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126

Query: 125 EVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHI 184
           +  +   +   L++R    NP   L++RE+ VL  +A G+SN  IA  L I E TVK H+
Sbjct: 127 QKYIPPDVGAKLVQRL--SNP--ELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHV 182

Query: 185 RNLLRKLNVHSRVAATVL 202
             +L KL+V  R  A ++
Sbjct: 183 NRILNKLDVGDRTQAVIV 200


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score =  125 bits (314), Expect = 1e-31
 Identities = 63/203 (31%), Positives = 113/203 (55%), Gaps = 5/203 (2%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64
           +K+L+++D PLM+ G++Q +   + FE++  V +G   +  A   +PD+I++D+ + GL 
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124
           G++  K ++       I++LT     N+I   + +GAD Y +K    + L+  I     G
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136

Query: 125 EVILSDSIKNLLLERTHEDNP-----LDSLTDREMGVLRQIATGLSNKQIAAQLFISEET 179
              L   I  +++E      P     + SL++RE+ VL+ I  G SN++IA  L++S  T
Sbjct: 137 ATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNT 196

Query: 180 VKVHIRNLLRKLNVHSRVAATVL 202
           +K H+R ++ KL+V  RV A V+
Sbjct: 197 IKTHVRGIMNKLSVDDRVQAAVI 219


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score =  124 bits (312), Expect = 2e-31
 Identities = 67/212 (31%), Positives = 121/212 (57%), Gaps = 13/212 (6%)

Query: 3   DKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKG 62
           +K+++ LI+D  L+R+G++  + ++ +FE V + ++G  G+ +  QT PDV+I+D+ +  
Sbjct: 2   EKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPD 61

Query: 63  LSGLDTLKGLRAEGVD--ARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR 120
           ++G+D  + L+   ++   R++ILT++D +  +     AGAD Y +KD+  + L+E I+ 
Sbjct: 62  MNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121

Query: 121 IAQGEVILSDSIKNLLLERTHEDNPLD-----------SLTDREMGVLRQIATGLSNKQI 169
              G   +  +I  ++L       P +            LT+RE+ VL+ I  G SN  I
Sbjct: 122 THGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADI 181

Query: 170 AAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201
           A +L+I+  TVK H+RN+L KL  + R  A V
Sbjct: 182 AEKLYITVGTVKTHVRNILNKLCANDRTQAAV 213


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score =  102 bits (253), Expect = 1e-24
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 18/217 (8%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64
           +++LL++D  L R G+   +  +   +V  +   G   I+   Q   DV+ILD+ + G+ 
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67

Query: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124
           G++    ++       +LILT       I  LI+A A GY +K    +TL+  I+ +A G
Sbjct: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAG 127

Query: 125 ----EVILSDSIKN-----------LLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQI 169
               + I S  I+            L L     +NP   LT RE+ +L  +A G SN++I
Sbjct: 128 AFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENP---LTKRELEILSLVAKGKSNQEI 184

Query: 170 AAQLFISEETVKVHIRNLLRKLNVHSRVAATVLFFEQ 206
           A +L+I+  TV+VH+  +LRKL V  R  A +L  E+
Sbjct: 185 ADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIER 221


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 75.1 bits (183), Expect = 2e-16
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 29/210 (13%)

Query: 2   QDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMK 61
           ++   +LL+DD P +   +K  +E       V    +G E + +   T PD+I+ D+ M 
Sbjct: 5   KENYHLLLVDDDPNLLLLVKDYLEYQGY--QVTTAGNGREALDLLTTTVPDMIVCDIMMP 62

Query: 62  GLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLI---DAGADGYLLKDTEPDTLLEQI 118
            + G   ++ +R     + I ++ +S AK   +  +   + GAD Y+ K  EP+ L  Q+
Sbjct: 63  EMDGYAFIEQVRQNPDISWIPVMFLS-AKGQSHNRVKGLNVGADIYMAKPFEPEELAAQV 121

Query: 119 KR-IAQGEVILSDSIKNLLLERTHEDNPLDS-----------LTDREMGVLRQIATGLSN 166
           +  + Q + +L            H ++PL+            LT  E  V++ +A GL+N
Sbjct: 122 QSCLRQADRLLQ-----------HNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLAN 170

Query: 167 KQIAAQLFISEETVKVHIRNLLRKLNVHSR 196
           ++IA  L +S+ TV+ H+ N+L K  +H+R
Sbjct: 171 REIADHLKVSQRTVESHVSNMLNKTGLHNR 200


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 70.1 bits (170), Expect = 5e-15
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 24/165 (14%)

Query: 48  QTSPDVIILDLNMKGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLK 107
           Q  P V+++   ++  SGLD LK L+A     + L+L ++D    +      GAD   L+
Sbjct: 68  QPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVEEAQQYGADAIFLE 127

Query: 108 DTEPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPL-----------DSLTDREMGV 156
            +           +  GE+ L+  ++ LL  RT+ D+ L           D LT RE+ +
Sbjct: 128 SS-----------LGNGEINLA--VECLLQGRTYIDSRLEAIADYRKSQKDELTQREVAI 174

Query: 157 LRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201
           LR +A G +N +I  +L ++  TV+ +++ ++RKLN   R +A +
Sbjct: 175 LRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAI 219


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 29/221 (13%)

Query: 1   MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM 60
           M + + +LL+DD P +R  ++  +E   +F+V    ++ TE         P ++I D+ M
Sbjct: 52  MAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDL-AANATEAWDYLQHHLPALVISDIMM 110

Query: 61  KGLSGLDTLKGLRAEGVDAR-----ILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLL 115
             + G   L+ LR    DAR     ++ LT      D       G D +L K  +PD L 
Sbjct: 111 PQVDGYQFLQKLRE---DARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELE 167

Query: 116 EQIKRIAQGEVILSDS-IKNLLLERTHED------------------NPLD-SLTDREMG 155
             ++ +   +   SD+  ++  L+  +++                  +P+    T RE  
Sbjct: 168 AIVRNLLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQS 227

Query: 156 VLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSR 196
           VL  ++ GL NK+IAAQL  S   V+ ++  L  K   +SR
Sbjct: 228 VLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSR 268


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 59.7 bits (143), Expect = 7e-12
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 24/176 (13%)

Query: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66
           +LL+DD   +   + + +    +   VAD   G  G+++A+    D++ILD  +  +SGL
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVAD--QGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 67  DTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI----KRIA 122
           +  + +R  G    +L LT  D  +D    +DAG D YL+K  E   LL ++    +R +
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 123 QGEVILS--DSIKNLLLERTHEDNPLDSLTDREMGVLRQIA------TGLSNKQIA 170
            GE I     ++KN LL          S+ +  + V  Q+A        LS K++A
Sbjct: 122 HGETITETLGAVKNNLL----------SVNNVSLDVANQVAYCQGQRIALSEKEVA 167


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 59.7 bits (143), Expect = 7e-12
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)

Query: 5   LKVLLI-DDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGL 63
           +++LL+ DD PL     + L +     ++  D S   +    A +   D++ILD+ +  L
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWD---YASRLEYDLVILDVMLPEL 57

Query: 64  SGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQ 123
            G+   +  R+      IL++T  D  ND  T +DAGAD Y++K  +   L  +++ + +
Sbjct: 58  DGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117

Query: 124 GEVILSDSIKN----LLLERTHE---DNPLDSLTDREMGVLRQIATG----LSNKQIAAQ 172
                   +       L   T+E   DN + SLT +E  +L  +       LS   I   
Sbjct: 118 RGCATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDS 177

Query: 173 LF-----ISEETVKVHIRNLLRKL 191
           ++       E+TVKVH+R+L +KL
Sbjct: 178 IWKLESPPEEDTVKVHVRSLRQKL 201


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 36  VSSGTEGISVALQTSPDVIILDLNMKGLSGLDTLKGLRAEGV--DARILILTVSDAKNDI 93
           V+SG E +    Q  PD+I+LDL M G+ GL+    L+ +    D  ++ LT S+ K D+
Sbjct: 47  VTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDL 106

Query: 94  YTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPLDSLTDRE 153
                 GA  Y+ K   P  LL ++K   + +    D++ + LLE+      L + T   
Sbjct: 107 LQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ-TRDNLHHTLLEQARTAEAL-ACTSTR 164

Query: 154 MGVLRQ 159
           +G+L Q
Sbjct: 165 LGILVQ 170


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66
           +L+++D  ++R  I + + L++   + A+  +   G+  +L+  PD+II D+ M  + G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 67  DTLKGLRAEGVDARI--LILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124
             +  L+     A I  + LT      D    +++GAD YL+K  + + LL  +    Q 
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123

Query: 125 EVILS----DSIKNLLLERTHEDNPL--DSLTDREMGVLRQIATGLSNKQI 169
           +  LS     SI + L ER      +   +LT  E  + R +  GL+  Q+
Sbjct: 124 QAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 33/218 (15%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVA-DVSSGTEGI---SVALQTSPDVIILDLNMK 61
           ++L+IDD P     I  LV +  N E+   DV    +GI   ++A+Q  PD+I+LDL + 
Sbjct: 3   RILIIDDDP----AISDLVSI--NLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLP 56

Query: 62  GLSGLDTLKGLRAEG--VDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIK 119
            + G    + LR +    D  +L+LT      D     D+GAD YL K  + + +L +++
Sbjct: 57  KVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVR 116

Query: 120 RI----------AQGEVILSDSIKNLLLERTHED--NPLDSLTDREMGVLRQI----ATG 163
            +          A+   IL+     L+ ER           LT  E  +L  +       
Sbjct: 117 ALLRRTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQT 176

Query: 164 LSNKQIAAQLFISE-----ETVKVHIRNLLRKLNVHSR 196
           +S   I  +++  E     ET++VHIR+L  KL  + R
Sbjct: 177 VSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPR 214


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 34/211 (16%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64
           +++LLI+D  L+  G++  + L      V   + G  G++       D ++LDL +  L 
Sbjct: 1   MRILLIEDDNLIGNGLQ--IGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLD 58

Query: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR---- 120
           GL+ L+  R+   D  +LILT  D  ++    + +GAD YL K   P  L E   R    
Sbjct: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCK---PFALAEVAARLQAL 115

Query: 121 -----------IAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATG----LS 165
                      I Q  V L  + +++ L     +N   SLT RE  +L          LS
Sbjct: 116 IRRRYGYHHSVIEQAGVKLDQNQRSVWL-----NNQPISLTSREYKLLELFMLNKDRVLS 170

Query: 166 NKQIAAQLF-----ISEETVKVHIRNLLRKL 191
              I  +L      IS   + VHI NL +KL
Sbjct: 171 RSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEV--VADVSSGTEGISVALQTSPDVIILDLNMKGL 63
           +VL++++   + R     +EL+  +E   V+    G +G + A +  PD+II++  + G+
Sbjct: 4   RVLVVEEEEKLAR----FMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGM 59

Query: 64  SGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQ 123
           SGL+  + LR  G    I+++T  D   +    +DAGAD Y++K    D    +I+    
Sbjct: 60  SGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIR---- 115

Query: 124 GEVILSDSIKNLLLERTH--EDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVK 181
                      + L RTH   D  L     R     R+I  G     + A+ F   + + 
Sbjct: 116 -----------VQLRRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLL 164

Query: 182 VHIRNLLRKLNVHSRV 197
            H R +L +  +  RV
Sbjct: 165 SHARQVLTREQILERV 180


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 4/112 (3%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65
           KVL++DD P  R  ++QL  L     VV +  +G   I++     P VI++D+ M  L G
Sbjct: 419 KVLVVDDRPESRLLLRQL--LTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476

Query: 66  LDTLKGLRA--EGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLL 115
             T + ++A  +G    I+ LT S  + +   ++ AG D +L K   P+ L+
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELI 528


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 9   LIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGLDT 68
           ++DD   +RR ++  + +   +EVV   + G E I+   ++ PD+++LD+ M  L G   
Sbjct: 1   MVDDEASIRRILETRLSMI-GYEVVT-AADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58

Query: 69  LKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121
            + LR E  D  I++LT      D  T ++ GAD Y++K   P  L  +I+ +
Sbjct: 59  CQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSV 110


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 50.8 bits (120), Expect = 3e-09
 Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 29/211 (13%)

Query: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66
           +L+++D   + + I++ +E +    +V +   G  G+ +  +  PD+I+LDL +  L GL
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTN--DGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 67  DTLKGLRAE--GVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124
           +    +R +    D  IL+LT    + D    +  GAD YL+K   P  L+ +++ + + 
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 125 EVILSDSIKNLLLERTHEDNPLD---------------SLTDREMGVLRQI--------- 160
           ++     +   +    H    LD                LT  E  +L            
Sbjct: 132 QLRQGQPV-GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWN 190

Query: 161 ATGLSNKQIAAQLFISEETVKVHIRNLLRKL 191
            T L  K      F  E  V  HIR L +K+
Sbjct: 191 RTQLIEKLWGNDFFGDERVVDTHIRRLRKKI 221


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 29/209 (13%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65
           K+LL+DD   +   +  L+EL+  F+V    ++G E +   L  S  +++LD+ M  L+G
Sbjct: 3   KLLLVDDDIELTELLSTLLELE-GFDVET-ANNGLEALQ-KLNESYKLVLLDVMMPKLNG 59

Query: 66  LDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGE 125
           ++TLK +R    +  +++LT      D    ++ GAD  L K      L+ +IK I +  
Sbjct: 60  IETLKEIRKVS-NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118

Query: 126 VILSDSIKN--------LLLERTH------EDNPLDSLTDREMGVLRQIATGLSNKQIAA 171
              S++I N        + L  +H      E+N   +LTD E  +L  +     N     
Sbjct: 119 ASPSNNISNVEILSFDGITLHFSHGIATYNEENL--NLTDYEFKILCLLLKSKGNVVSRE 176

Query: 172 QLFIS---------EETVKVHIRNLLRKL 191
           +L +          + ++ +HI NL RKL
Sbjct: 177 ELSLEVMEKPLTPFDRSLDMHISNLRRKL 205


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 49.3 bits (116), Expect = 9e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 145 PLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRV 197
           P  SL+DRE+ +L  +A GL+N++++ +L IS+ TV  H+ N+L K N  +RV
Sbjct: 8   PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRV 60


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 12/122 (9%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVAL-------QTSPDVIILDL 58
           ++L+++D   +R  I   ++ ++ +EV A V  G + +++         Q + D+IILD+
Sbjct: 32  RILVVEDEVSIRETIVLSLQ-EEGYEVYA-VDDGRDALALLQEFSEDPGQAAVDLIILDI 89

Query: 59  NMKGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118
            +  ++GLD  + LR  G +  ILI++   ++ +  T ++ GAD Y+   T+P +L E +
Sbjct: 90  MLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYI---TKPFSLKELV 146

Query: 119 KR 120
            R
Sbjct: 147 AR 148


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 46.2 bits (108), Expect = 8e-08
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65
           K+L+++D   +R  I     L   +  V + S     I+  ++ +P +I+LD  + G SG
Sbjct: 4   KILIVEDECAIREMIALF--LSQKYYDVIEASDFKTAIN-KIKENPKLILLDWMLPGRSG 60

Query: 66  LDTLKGLRAEGVDARI--LILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121
           +  ++ ++ +   A I  ++LT    + D    ++AGAD Y+ K   P  LL +I+ +
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 149 LTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAA 199
           L++RE  ++  +A GL ++ IA +L ISE TVK H+   L KLN  +R  A
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQA 359


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQ--TSPDVIILDLNMKG 62
           +++LL++D P +   +++ +  ++   VV  V  G    S   Q   +  + I D  + G
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENY--VVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPG 58

Query: 63  LSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121
           LSGL+  + LR +     IL+LT  D   D    +DAGAD YL+K      LL +++ +
Sbjct: 59  LSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSL 117


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 44.3 bits (103), Expect = 3e-07
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65
           K+L+++D  + R  +K + E +  ++V  +  +G E   +    + +++++D+N+ G +G
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAE-GYDVF-EAENGVEMHHILANHNINLVVMDINLPGKNG 62

Query: 66  LDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTL 114
           L   + LR E +   ++ LT  D + D    ++ GAD YL K   P  L
Sbjct: 63  LLLARELREE-LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 43.9 bits (102), Expect = 4e-07
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66
           +LL++D+ + R     L+        VA+  +G E +++    + D I++D+ M  L+G 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVAN--NGQEALTLLTSNTYDAILMDIQMPMLNGY 777

Query: 67  DTLKGLRAEGVDAR--ILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118
           D  + +R +       I+ +T +    D    +DAG + +L K  +PD L + +
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 43.9 bits (102), Expect = 4e-07
 Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65
           K+L++DD   MR  ++  ++ + +   +A  ++G E ++   +  P+V++LD  M  + G
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELA--TNGEEALTKFAEIKPEVVLLDAVMPVMDG 70

Query: 66  LDTLKGLRA--EGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIA- 122
               + L    +     +L++T  D +  +    +AGA  Y+ K      L +++KR+  
Sbjct: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130

Query: 123 QGEVILSDSIKNLLLERTHEDNPLDSLTDR 152
           Q  +       N +LER  + + L  L +R
Sbjct: 131 QNRLQHQLESVNQMLERLAKVDQLTQLANR 160


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 43.5 bits (101), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQ--TSPDVIILDLNMKG 62
           +++LL++D   +   IK+++  +    VV  V+ G++         T   + I+D  + G
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKY--VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58

Query: 63  LSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121
           LSGL+  + LR +G    +L+LT      +    +DAGAD YL   T+P  + E + R+
Sbjct: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYL---TKPFVMAELLARL 114


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 42.7 bits (99), Expect = 9e-07
 Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKG-LS 64
           K+L+++D  L+ + I QL++  D +E+    S G   +    +  PD+++LD+ +KG + 
Sbjct: 4   KILIVEDERLVAQHIAQLLK-SDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62

Query: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118
           G++  + +++      I+ LT       +         GY++K    + LL  +
Sbjct: 63  GIEVAERIKSL-YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 42.7 bits (99), Expect = 9e-07
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66
           VLL++D    R  I  +  L D+   V     G E +      SPD+++LD+ M  ++G 
Sbjct: 30  VLLVEDSSSQREMISGI--LKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGY 87

Query: 67  DTLKGLRAEGVDARILILTVSD--AKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121
           +  + ++++     + ++  S    + D +  +  GAD Y+ K  +P  L+  IK++
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 41.2 bits (95), Expect = 3e-06
 Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 1    MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM 60
            +Q  L++LL +D+ + ++   Q+  L++    VA  ++G E I    +   D++++D+ M
Sbjct: 1186 LQPALQILLAEDNLVNQKVAHQM--LNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQM 1243

Query: 61   KGLSGLDTLKGLRAE---GVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQ 117
              + G+   + +R         RI+ +T +    D    +DAG DGY+ K       + Q
Sbjct: 1244 PVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPIS----INQ 1299

Query: 118  IKRIAQ 123
            ++++ Q
Sbjct: 1300 LRKVLQ 1305


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.138    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,990
Number of Sequences: 78
Number of extensions: 797
Number of successful extensions: 55
Number of sequences better than 1.0e-05: 31
Number of HSP's better than  0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 33
length of query: 208
length of database: 48,235
effective HSP length: 59
effective length of query: 149
effective length of database: 43,633
effective search space:  6501317
effective search space used:  6501317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-000816 HI0837  response regulator (cpxR)
         (227 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  382   e-109
SYNE-PCC-01-002033 slr0947                                            121   2e-30
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   118   2e-29
SYNE-PCC-01-000414 sll0649                                            108   1e-26
SYNE-PCC-01-001437 slr0081                                            108   1e-26
SYNE-PCC-01-001461 slr0115                                            107   3e-26
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   100   5e-24
SYNE-PCC-01-002672 slr1837                                             99   9e-24
SYNE-PCC-01-002486 slr1584                                             97   3e-23
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    96   1e-22
SYNE-PCC-01-000242 sll0396                                             91   3e-21
SYNE-PCC-01-002086 slr1042                                             87   3e-20
SYNE-PCC-01-002731 slr1909                                             82   1e-18
SYNE-PCC-01-000523 sll0797                                             82   2e-18
SYNE-PCC-01-000518 sll0789                                             82   2e-18
SYNE-PCC-01-002635 slr1783                                             68   3e-14
SYNE-PCC-01-000877 sll1330                                             68   3e-14
SYNE-PCC-01-002873 slr2098                                             66   8e-14
SYNE-PCC-01-001306 sll1905                                             65   2e-13
SYNE-PCC-01-002879 slr2104                                             62   2e-12
SYNE-PCC-01-002489 slr1588                                             61   3e-12
SYNE-PCC-01-001133 sll1673                                             61   4e-12
SYNE-PCC-01-002788 slr1982                                             55   2e-10
SYNE-PCC-01-001132 sll1672                                             55   2e-10
SYNE-PCC-01-002618 slr1760                                             55   3e-10
SYNE-PCC-01-000800 sll1228                                             52   1e-09
SYNE-PCC-01-002617 slr1759                                             51   4e-09
SYNE-PCC-01-002221 slr1213                                             47   7e-08
SYNE-PCC-01-001075 sll1592                                             44   6e-07
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    40   8e-06

>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  382 bits (980), Expect = e-109
 Identities = 199/227 (87%), Positives = 199/227 (87%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGI 60
           MSKLLLVDDDI             GFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGI
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGI 60

Query: 61  ETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120
           ETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS
Sbjct: 61  ETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120

Query: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180
           PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL
Sbjct: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180

Query: 181 EVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGYALVT 227
           EVMEKPLTPFDRSLDMHI               WFKTLRGKGYALVT
Sbjct: 181 EVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYALVT 227


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  121 bits (303), Expect = 2e-30
 Identities = 82/222 (36%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 6   LVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIETLK 64
           +VDD+              G++V TA +G EA+   +ES   LV+LDVMMPKL+G    +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  EIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRR-SASPSN 123
           E+RK S++P++MLTA G+  DR+ GLELGADD + KPF+ +EL ARI+++LRR   +   
Sbjct: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120

Query: 124 NISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSLEVM 183
            I +  +L    I +  +       +E + LT  EF +L LL+   G   SR E+  EV 
Sbjct: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180

Query: 184 -EKPLTPFD-RSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGY 223
              P    D R +D+HI                  T RG GY
Sbjct: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 222


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  118 bits (295), Expect = 2e-29
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNGIE 61
           K+L+V+D+I             G+DV  A NG+E    L N +  LV++D+ +P  NG+ 
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 62  TLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA-- 119
             +E+R+  ++P++ LT R  ++D++LGLE+GADD L KPFN REL  R + +L R+   
Sbjct: 65  LARELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPH 124

Query: 120 SPSNNISNVEILSFDGITLHF-SHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREEL 178
               N    E   F+G  L   SH + T   +   L   EF+ +    ++ G + +REEL
Sbjct: 125 QEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREEL 184

Query: 179 SLEVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGY 223
             ++  + L P DR++D+ I                  T+ G+GY
Sbjct: 185 LKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  108 bits (271), Expect = 1e-26
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 8/230 (3%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNG 59
           M  +L+V+DD               F     N+G   L+   E    L++LD+M+PKL+G
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70

Query: 60  IETLKEIRKV--SNVP-VMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116
           +E    IR+   S  P ++MLTA+GE+IDR++GL  GADD L KPF+ REL+AR++A+LR
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130

Query: 117 RSASPSNNISNVEILSFDGITLHFSHGIATY---NEENLNLTDYEFKILCLLLKSKGNVV 173
           R       +  +   +   + L   H  + Y    +E L LT  EF +L   +   G V 
Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDLD-QHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVW 189

Query: 174 SREELSLEVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGY 223
           +R +L  ++        +R +D HI               + KT+ G GY
Sbjct: 190 NRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGY 239


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  108 bits (270), Expect = 1e-26
 Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNE--------SYKLVLLDVMM 54
           ++L+V+D++             G++V   ++G +AL  L E        +  L++LD+M+
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 55  PKLNGIETLKEIR-KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKA 113
           P++NG++  + +R    N P+++++A+G ++++V GLE+GADD + KPF+ +EL+AR +A
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 114 ILRRSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVV 173
           ++RR     NNI+      F  + L+          E ++L   EF++L L +     V 
Sbjct: 152 MIRRQGLAGNNIA--PFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVW 209

Query: 174 SREELSLEVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGY 223
           SRE+L   +         +++D+HI               +  T+RG GY
Sbjct: 210 SREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  107 bits (268), Expect = 3e-26
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK--LVLLDVMMPKLN 58
           M ++L++DDD              G+DV+ A +G++  Q L    +  L++LD+M+PK++
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 59  GIETLKEIRK---VSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115
           G    + +R+    +++PV+MLTA G+  D++ G + GADD L KPF+  E++AR++A+L
Sbjct: 60  GFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119

Query: 116 RRSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSR 175
           RR+        + EIL+   +TL      A +  +++ LT  EF++L  LL+  G  VS 
Sbjct: 120 RRTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSP 179

Query: 176 EELSLEVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGYAL 225
            ++  EV          ++ +HI               + KT+ G GY L
Sbjct: 180 SDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  100 bits (248), Expect = 5e-24
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 9/224 (4%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGIET 62
           K+L+V+D+               +DV  A++   A+ K+ E+ KL+LLD M+P  +GI+ 
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPKLILLDWMLPGRSGIQF 63

Query: 63  LKEIRKVSN---VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119
           ++ I+K  +   +P++MLTA+  + D +  L  GADD + KPF+ + L+ARI+A+ RR  
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 120 SPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELS 179
              +    ++ LS D            + ++ +NL+  EFK+L   ++    V SRE+L 
Sbjct: 124 EQQSQFIQIDELSIDENAQR-----VFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLL 178

Query: 180 LEVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGY 223
             +    L    R++D +I               + +T+RG GY
Sbjct: 179 NRIWHNDLEVEYRTVDSYI-RRLRRNLAPFQCEHYIQTVRGSGY 221


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 99.4 bits (246), Expect = 9e-24
 Identities = 59/185 (31%), Positives = 103/185 (55%), Gaps = 7/185 (3%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEAL-QKLNESYKLVLLDVMMPKLNG 59
           M+ +LLVDD+              G  ++ A+ G   L   +   Y L++LD M+P+++G
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 60  IETLKEIRKVSN-VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
           +E  ++IR + +  PV+ LTA+    DRV GL+ G DD L KPF  REL+AR++A+LRR 
Sbjct: 61  LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQ 120

Query: 119 ASPSNNISNV-----EILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVV 173
           +        +      +LS + ++L  ++ +A    + + L++ E  +L L L++ G ++
Sbjct: 121 SHGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQIL 180

Query: 174 SREEL 178
           S EE+
Sbjct: 181 SHEEI 185


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 97.4 bits (241), Expect = 3e-23
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGIE 61
           ++LLV+DD+              + V+ A +   A    +   Y LV+LDVM+P+L+GI 
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 62  TLKEIRKVSNV-PVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120
             ++ R  S + P++M+TAR    D++ GL+ GADD + KP +  EL AR++A+LRR  +
Sbjct: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121

Query: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180
                    +L +  I L  S    +Y+ E L+LT  E+ IL LLL++   V+SR  +  
Sbjct: 122 TCQ-----PVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIID 176

Query: 181 EVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGYAL 225
            + +    P + ++ +H+                 +T+ G GY L
Sbjct: 177 SIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 95.9 bits (237), Expect = 1e-22
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 12/225 (5%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61
           ++LL++DD              GF V+   +G   +  L  + Y  V+LD+ +PKL+G+E
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 62  TLKEIRKV-SNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120
            L++ R    +VPV++LTAR    +RV GL+ GADD L KPF   E+ AR++A++RR   
Sbjct: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121

Query: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180
             ++     ++   G+ L  +      N + ++LT  E+K+L L + +K  V+SR  +  
Sbjct: 122 YHHS-----VIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSI-- 174

Query: 181 EVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGYAL 225
              E+ L+ +D  +                   + +T+ G GYAL
Sbjct: 175 ---EEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYAL 216


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 90.9 bits (224), Expect = 3e-21
 Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGIE 61
           ++L+V+++              G+DV  A +GL+   +  E    L++++  +P ++G+E
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 62  TLKEIRKV-SNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120
             + +R++ S +P++++TA+ +  +RV+GL+ GADD + KPFN  E  ARI+  LRR+ +
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180
            S+ +     L F+  T     G     +  ++LT  EF++L  LL     V++RE++  
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRG-----DRLIDLTAKEFELLDYLLSHARQVLTREQILE 178

Query: 181 EVMEKPLTPFDRSLDMHIXXXXXXXXXXXXXXXWFKTLRGKGYAL 225
            V           ++++I                 +T+RG GY L
Sbjct: 179 RVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRL-IQTVRGVGYVL 222


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 87.4 bits (215), Expect = 3e-20
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNG 59
           M+ +LLV+D               G+ V  A +G+EAL+KL N S  LV+LD++MP++NG
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 60  IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116
            E  + I+   K  NVPV+M +++GE+ DR  G+  GAD  + KPF   EL+  IK +LR
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 82.0 bits (201), Expect = 1e-18
 Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 4/119 (3%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIET 62
           LLLVDDD              G+ V TA NG EAL  L  +   +++ D+MMP+++G   
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 63  LKEIRK---VSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
           ++++R+   +S +PVM L+A+G+  +RV GL +GAD  + KPF   EL A++++ LR++
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 7/189 (3%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNES---YKLVLLDVMMPKLNG 59
           ++LLV+D+               + V+   +G +A   L      Y L ++D ++P L+G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 60  IETLKEIRKVSN-VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
           +E  +++R   N +PV+MLTA GE  +RV GL+ GADD L KPF   EL+AR++A+ RRS
Sbjct: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRS 121

Query: 119 ASPSNNISNVEILSFDGITLHFSHGIA---TYNEENLNLTDYEFKILCLLLKSKGNVVSR 175
                 I  +   S D      S  I+       + + LT  EF+I   L+++   ++S 
Sbjct: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181

Query: 176 EELSLEVME 184
            ++  ++ +
Sbjct: 182 SKIRQQLWD 190


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNE---SYKLVLLDVMMPKLNG 59
           +LLLV+D+               + V+   +G  A   L++   +Y L + D M+P L+G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 60  IETLKEIR-KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
           +E  +++R + S++P++MLTA+ +  DRV GL+ GADD L KPF   EL+AR++++ RRS
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 119 ASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREEL 178
                    V     D    + +  + T  +  + LT  EF++L   +K    ++S E++
Sbjct: 122 PELQPQQLQVGQWWLD----YGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQI 177


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXG-FDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIE 61
           LLLVDD+              G F V+ A N  EA   L      LV+ D+MMP+++G +
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 62  TLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
            L+++R   +  ++PV+ LTARG   DR+ G + G D  L KPF+  EL A ++ +L R 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177

Query: 119 ASPSN 123
            + S+
Sbjct: 178 QASSD 182


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 25  GFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIETLKEIRKVSNVPVMMLTARGED 83
           G+ V+  +   +A Q  N     L ++D  +   +GIE  + + +     + +L+A+  +
Sbjct: 27  GYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCRWLYQQHQSMIFILSAKDTE 86

Query: 84  IDRVLGLELGADDCLPKPFNDRELIARIKAILRRSASPSNNISNVEILSFDGITLHFSHG 143
            D V GL+ GADD L KPF  +E +ARI+ ++RR       ++   +L +  + +     
Sbjct: 87  KDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR----VRTVAAPLLLDYGVLKIDLVQR 142

Query: 144 IATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSLEVMEKPLTPFDRSLDMHIXXXXX 203
              Y    ++LT  EF +L +L +++G+ +SR EL      + +    R++D H+     
Sbjct: 143 RVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAWPEAIDN-PRTIDTHVLSLRK 201

Query: 204 XXXXXXXXXXWFKTLRGKGY 223
                       +T+R  GY
Sbjct: 202 KIETDPRQPSLIQTVRNVGY 221


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 66.2 bits (160), Expect = 8e-14
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 2    SKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGI 60
            +++LLV+D+              GF+V+ A NGL AL++LN + Y LVL+D+ MP+++GI
Sbjct: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984

Query: 61   ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107
            E    IR   + + +P++ +TA     DR   L+ G +D L KP    EL
Sbjct: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKL------NESYKLVLLDVMMPK 56
           ++L+VDD+               F VET  +G EAL  L      N  + +V +D  MP 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 57  LNGIETLKEIRKVS---NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKA 113
           ++G+E  + ++ +       + ++TA G +   V    LG DD L KP +   L   +  
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891

Query: 114 IL 115
           +L
Sbjct: 892 VL 893


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIET 62
           +L+VDD               G+      +G EALQ++ ++   L+LLD+MMP ++G+E 
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 63  ---LKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119
              LK+  +  ++PV+ LTA  E  D +     GA D + KPF+  EL+AR+K  L    
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139

Query: 120 SPSN 123
           +  N
Sbjct: 140 TRDN 143



 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGIET 62
           +LL +D++             G+ V+  NNG EAL  L +  Y +VL+DV MP+++G+  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 63  LKEIRKV---SNVP-VMMLTARGEDIDRVLGLELGADDCLPKP 101
            + IR+    S  P ++ +TA   + DR   L  G +D + KP
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 2   SKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNGI 60
           + +LLV+D+              G  V+ ANNG EAL  L + +Y  +L+D+ MP LNG 
Sbjct: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777

Query: 61  ETLKEIRKVS---NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL-- 115
           +  + IR+     N+P++ +TA     D+   L+ G +D L KP     L   +   +  
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPP 837

Query: 116 ---RRSASPSNNISNVEILSFDGIT 137
              R   +PS+N+     LSF  +T
Sbjct: 838 NSAREKKNPSSNLK--ADLSFSSMT 860


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESY---KLVLLDVMMPKL 57
           MS +L+V+D+               + +  A NG  AL  LN       L++ DVMMP++
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 58  NG---IETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAI 114
           +G   I  L++  K + +P + LTA G   D   G+  GADD L KPF   +L+  + + 
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120

Query: 115 LRRSASPS 122
           L++ A  S
Sbjct: 121 LQKQAKLS 128


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNGIET 62
           +LLVDD               G+ V +  +G  AL+ L  +   L+LLD+ MP ++G + 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 63  LKEIRK---VSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIK 112
            + I+K   + ++P++ ++A G+  D+V   E G  D + KPF   E++ARI+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEAL-QKLNESYKLVLLDVMMPKLNG 59
           M+K+LLV+D+              G++V  A +G +A+   ++ES +L+L+D+ +P ++G
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 60  IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115
               K+I+     +++P++ LTA     DR   +  G DD   KP   + L+ +++A++
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 6/110 (5%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESYK--LVLLDVMMPKLNGI 60
           K+L+VDD               GF++E A+NG EA+  L ES++  L+ +D+ MP ++G 
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIA-LWESWEPHLIFMDMRMPVMDGY 689

Query: 61  ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107
           E  K I+   K +   V+ LTA   + ++ + L  G DD L KPF +  +
Sbjct: 690 EATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTI 739


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 54.7 bits (130), Expect = 3e-10
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 2   SKLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGI 60
           +K+L+VDDD              G  VE A NG EAL K  E   ++VLLD +MP ++G 
Sbjct: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71

Query: 61  ETLKEIRKVSNVP---VMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115
              + + K+   P   V+M+T   ++       E GA D + KP +   L  R+K +L
Sbjct: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 3   KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNESY--KLVLLDVMMPKLNGI 60
           K+L+VDD               GF V+ A NG  A+  L ES+  +++L+D+ MP L+G 
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIA-LWESWHPQVILMDMQMPVLDGR 477

Query: 61  ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIA 109
            T ++I+   +  +  ++ LTA   + +R   L  G DD L KPF   ELIA
Sbjct: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 3    KLLLVDDDIXXXXXXXXXXXXXGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61
            ++LL +D++             G+ V  ANNG E +  L +  Y LVL+D+ MP ++GI 
Sbjct: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250

Query: 62   TLKEIRKVSNVP----VMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107
              + IR+   +     ++ +TA     DR   L+ G D  + KP +  +L
Sbjct: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 7/116 (6%)

Query: 1   MSKLLLVDDDIXXXXXXXXXXXXXGFDV-ETANNGLEALQKLNESYK-LVLLDVMMP-KL 57
           ++K+L+V+D+              G+++   A++G  AL+K+ E Y  LVLLD+ +  ++
Sbjct: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61

Query: 58  NGIETLKEIRKVSNVPVMMLTA--RGEDIDRVLGLELGADDCLPKPFNDRELIARI 111
           +GIE  + I+ + ++P++ LTA   GE ++R    +      + KPF   +L++ +
Sbjct: 62  DGIEVAERIKSLYSIPIVYLTAFSDGETLER--AQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 43.5 bits (101), Expect = 6e-07
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 4   LLLVDDDIXXXXXXXXXXXXXGFDVE-TANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61
           LL+ DD++             G DV   A +G  A+  +N+  + +V+LDV +P + GIE
Sbjct: 11  LLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGIE 70

Query: 62  TLKEIRKV-SNVPVMMLTARGED--IDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118
              +I+K+   +PV++LT+  +   I+R+  +E  A     K      L+  I+++   +
Sbjct: 71  ACHQIKKIHPQLPVLILTSHSQPALINRL--IEAQAQGYCVKGVAAETLVLAIRSVAAGA 128

Query: 119 ----ASPSNNISNV-EILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVV 173
               A  S  I    +  S  G  L     +A  + EN  LT  E +IL L+ K K N  
Sbjct: 129 FWWDAIASQEIQTAFQHSSSTGAVL----PLADADGEN-PLTKRELEILSLVAKGKSNQE 183

Query: 174 SREEL 178
             +EL
Sbjct: 184 IADEL 188


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 39.7 bits (91), Expect = 8e-06
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 27  DVETANNGLEALQKLNESYKLVLLDVMMPKLNGIETLKEIRKVS-NVPVMMLTARGEDID 85
           DV +   G+     L  S  +++LD+ M  L+G++TLK +R    +  +++LT      D
Sbjct: 35  DVSSGTEGISVA--LQTSPDVIILDLNMKGLSGLDTLKGLRAEGVDARILILTVSDAKND 92

Query: 86  RVLGLELGADDCLPKPFNDRELIARIKAILRRSASPSNNISNV 128
               ++ GAD  L K      L+ +IK I +     S++I N+
Sbjct: 93  IYTLIDAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDSIKNL 135


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.139    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,567
Number of Sequences: 78
Number of extensions: 892
Number of successful extensions: 86
Number of sequences better than 1.0e-05: 30
Number of HSP's better than  0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 33
length of query: 227
length of database: 48,235
effective HSP length: 60
effective length of query: 167
effective length of database: 43,555
effective search space:  7273685
effective search space used:  7273685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-000863 HI0884  aerobic respiration control protein
ARCA (arcA)
         (236 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   452   e-130
SYNE-PCC-01-000414 sll0649                                            126   5e-32
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  125   1e-31
SYNE-PCC-01-001437 slr0081                                            120   5e-30
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   105   1e-25
SYNE-PCC-01-002033 slr0947                                             99   2e-23
SYNE-PCC-01-000518 sll0789                                             94   3e-22
SYNE-PCC-01-001461 slr0115                                             94   5e-22
SYNE-PCC-01-002672 slr1837                                             92   1e-21
SYNE-PCC-01-000523 sll0797                                             82   1e-18
SYNE-PCC-01-000242 sll0396                                             82   2e-18
SYNE-PCC-01-002486 slr1584                                             79   2e-17
SYNE-PCC-01-000877 sll1330                                             78   3e-17
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    66   1e-13
SYNE-PCC-01-002086 slr1042                                             61   4e-12
SYNE-PCC-01-002635 slr1783                                             58   2e-11
SYNE-PCC-01-002731 slr1909                                             57   4e-11
SYNE-PCC-01-002489 slr1588                                             57   4e-11
SYNE-PCC-01-000800 sll1228                                             54   6e-10
SYNE-PCC-01-001132 sll1672                                             52   2e-09
SYNE-PCC-01-001306 sll1905                                             51   3e-09
SYNE-PCC-01-002618 slr1760                                             48   2e-08
SYNE-PCC-01-001575 slr0312                                             48   2e-08
SYNE-PCC-01-002879 slr2104                                             48   3e-08
SYNE-PCC-01-002873 slr2098                                             43   1e-06
SYNE-PCC-01-002788 slr1982                                             43   1e-06

>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  452 bits (1163), Expect = e-130
 Identities = 221/236 (93%), Positives = 221/236 (93%)

Query: 1   MTTPKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGK 60
           MTTPKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGK
Sbjct: 1   MTTPKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGK 60

Query: 61  NGXXXXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
           NG               IFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR
Sbjct: 61  NGLLLARELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120

Query: 121 AMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQT 180
           AMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQT
Sbjct: 121 AMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQT 180

Query: 181 REELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDIE 236
           REELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDIE
Sbjct: 181 REELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDIE 236


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  126 bits (317), Expect = 5e-32
 Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 4   PKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGX 63
           P IL+VED+      ++   E E +      +G     I      +L+V+D+ LP  +G 
Sbjct: 12  PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 64  XXXXXXXXXXXXXX---IFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
                            + LT +  E+D+I+GL  GADDYL KPF+PREL  R R LL R
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 121 AMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEG---QEFKLPRSEFRAMLHFCENPGK 177
            +   +       + YR N +++DL+ H     +G   +E +L   EF  +  F   PG+
Sbjct: 132 QLRQGQPVG----QIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGR 187

Query: 178 LQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
           +  R +L++K+ G +    +R VD  IRR+RK  E  P  P  I T+ G GY+F
Sbjct: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  125 bits (314), Expect = 1e-31
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           K+L+V+D+I     L  + E EG+DV  A NG+E    L N +  LV++D+ +P  NG  
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNGIE 61

Query: 65  XXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPH 124
                        + LT R  ++D++LGLE+GADD L KPFN REL  R + +L R+   
Sbjct: 62  TLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA-- 119

Query: 125 QEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREEL 184
               N    E   F+G  L   SH + T   +   L   EF+ +    ++ G + +REEL
Sbjct: 120 SPSNNISNVEILSFDGITLHF-SHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREEL 178

Query: 185 LKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229
             ++  + L P DR++D+ I  +R+      N P+   T+ G+GY
Sbjct: 179 SLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  120 bits (300), Expect = 5e-30
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 19/238 (7%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHN-------INLVVMDINL 57
           +ILVVEDE+  R T+    + EGY+V+  ++G +   +L   +       ++L+++DI L
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 58  PGKNGXXXXXXXXXXXXXXXIFL-TGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARN 116
           P  NG               I + + + +E++K+ GLE+GADDY+TKPF+ +EL  R R 
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 117 LLHRAMPHQEKENTFGREFYRFNGWKLDL---NSHSLITPEGQEFKLPRSEFRAMLHFCE 173
           ++ R       +   G     F  ++ DL        +   G+E  L   EFR +  F  
Sbjct: 152 MIRR-------QGLAGNNIAPFRKFR-DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMS 203

Query: 174 NPGKLQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
            P ++ +RE+L++ + G +     +TVDV IR +R+  E  P+ P  ++T+ G GYRF
Sbjct: 204 YPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  105 bits (262), Expect = 1e-25
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 13/232 (5%)

Query: 3   TPKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNG 62
           T KIL+VEDE   R  +      + YDV EA +     + +   N  L+++D  LPG++G
Sbjct: 2   TRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSG 60

Query: 63  XXXXXXXXXXXXXXXI---FLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLH 119
                          I    LT +  E D I  L  GADDY+TKPF+P+ L  R   +  
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 RAMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQ 179
           R    Q        +F + +   +D N+  +   + QE  L  +EF+ +  F  +P K+ 
Sbjct: 121 RIYEQQS-------QFIQIDELSIDENAQRVFFQQ-QEINLSSTEFKLLHFFMRHPEKVY 172

Query: 180 TREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
           +RE+LL ++   +L+ + RTVD  IRR+R++        + I T+ G GYRF
Sbjct: 173 SREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPF-QCEHYIQTVRGSGYRF 223


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 98.6 bits (244), Expect = 2e-23
 Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 8   VVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXXXX 67
           +V+DE   R  L+      GY+V  A +G E        + +LVV+D+ +P  +G     
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 68  XXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR----AMP 123
                     I LT   +  D+I GLE+GADDY+ KPF+P+EL  R R++L R     MP
Sbjct: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120

Query: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183
                        +    ++D N   +   + +  +L   EF  +       G+  +R E
Sbjct: 121 GIPSSGVL-----QIATIRIDTNKRQVYKGD-ERIRLTGMEFSLLELLVSRSGEPFSRSE 174

Query: 184 LLKKMTG--RELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
           +L+++ G   E     R VDV I R+R   E+ P+ P +I+T  G GY F
Sbjct: 175 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 94.4 bits (233), Expect = 3e-22
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNIN--LVVMDINLPGKNG 62
           ++L+VEDE      L+     E Y V   ++G      L    +N  L + D  +PG +G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 63  XXXXXXXXXXXXXXXIF-LTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121
                          I  LT +D   D++ GL+ GADDYL KPF   EL  R R+L  R+
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 122 MPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTR 181
              Q ++   G+       W LD  + +++TPE     L   EF+ + +F ++P ++ + 
Sbjct: 122 PELQPQQLQVGQ-------WWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSS 174

Query: 182 EELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
           E++  ++     +     V   +R +R+  E++ +  N+I T++G GYRF
Sbjct: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSH-GNLIETVYGLGYRF 223


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 93.6 bits (231), Expect = 5e-22
 Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 26/239 (10%)

Query: 4   PKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGX 63
           P+IL+++D+    + +    E  GYDV +A +G++   +      +L+++D+ LP  +G 
Sbjct: 2   PRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGF 61

Query: 64  XXXXXXXXXXXXXXI---FLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
                         I    LT      DKI G + GADDYLTKPF+  E+  R R LL R
Sbjct: 62  TVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121

Query: 121 A--MPHQEKENTFGREFYRFNGWKLDLNSHSL-ITPE-------GQEFKLPRSEFRAMLH 170
              +P   K +               LN   L + PE       G+  KL   EF  +  
Sbjct: 122 TDRIPQAAKHSEI-------------LNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHC 168

Query: 171 FCENPGKLQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229
             +  G+  +  ++L+++ G E      T+ V IR +R   E +P  P  I T++G GY
Sbjct: 169 LLQRHGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 92.0 bits (227), Expect = 1e-21
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 6/230 (2%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           IL+V+DE      L      +G+ +  A+ G     +      +L+++D  LP  +G   
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 66  XXXXXXXXXXXXI-FLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPH 124
                       + FLT +D   D++ GL+ G DDYL KPF  REL  R R LL R    
Sbjct: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSHG 123

Query: 125 QEKENTFG---REFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTR 181
           +    T G         N   LD+ ++ +   +GQ   L   E   +  F + PG++ + 
Sbjct: 124 ETITETLGAVKNNLLSVNNVSLDV-ANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182

Query: 182 EELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
           EE+   +   E  P    +   +R +R+  E  PN P +I +++G+GY F
Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIE-QPNAPRLINSVYGKGYCF 231


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 82.4 bits (202), Expect = 1e-18
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 4/230 (1%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANH--NINLVVMDINLPGKNG 62
           +IL+VEDE      +K +  +E Y V    +G +    L N      L ++D  LPG +G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 63  XXXXXXXXXXXXXXXIF-LTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121
                          +  LT      +++ GL+ GADDYLTKPF   EL  R R L  R+
Sbjct: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRS 121

Query: 122 MPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTR 181
              Q +  T G      +   L +     +  E QE  L   EF+   +  +NP ++ + 
Sbjct: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181

Query: 182 EELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231
            ++ +++   + +P    V   +R IR+      N P  I T+ G+GYRF
Sbjct: 182 SKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 82.0 bits (201), Expect = 2e-18
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           ++LVVE+E      ++   + EGYDV  A +G++          +L++++  LPG +G  
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 65  XXXXXXXXXXXXXIFL-TGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123
                        I L T +D+  ++++GL+ GADDY+ KPFN  E   R R  L R   
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT-- 121

Query: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183
           H   +        RFN       S   I    +   L   EF  + +   +  ++ TRE+
Sbjct: 122 HTTSDEVLQFADLRFN------RSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQ 175

Query: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229
           +L+++ G +       ++V IR +R   E     P +I T+ G GY
Sbjct: 176 ILERVWGYDFMGDSNIIEVYIRYLRLKLE-AAGEPRLIQTVRGVGY 220


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 78.6 bits (192), Expect = 2e-17
 Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           +IL+VED++    TL      + Y V  A +        +    +LV++D+ LP  +G  
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 65  XXXXXXXXXXXXXIFL-TGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123
                        I + T RD   DKI GL+ GADDY+ KP +  EL  R R LL R   
Sbjct: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121

Query: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183
             +    +G         +LD +++  ++ + +   L R E+  +     N  ++ +R  
Sbjct: 122 TCQPVLEWG-------PIRLDPSTYE-VSYDNEVLSLTRKEYSILELLLRNGRRVLSRSM 173

Query: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYR 230
           ++  +   E  P++ TV V +R +R+  +    + + I T+HG GYR
Sbjct: 174 IIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 77.8 bits (190), Expect = 3e-17
 Identities = 63/230 (27%), Positives = 91/230 (39%), Gaps = 8/230 (3%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           I VVE     R+ L    +  GY V +     +      N    L V+D +L   +G   
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 66  XXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPHQ 125
                         L+ +D E D + GL+ GADDYLTKPF  +E   R   L+ R     
Sbjct: 66  CRWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRV---- 121

Query: 126 EKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREELL 185
                       +   K+DL     +  +G    L   EF  +    +  G   +R ELL
Sbjct: 122 --RTVAAPLLLDYGVLKIDLVQRR-VEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELL 178

Query: 186 KKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDI 235
           ++    E     RT+D  +  +RK  E  P  P++I T+   GYRF   I
Sbjct: 179 RR-AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSI 227


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 65.9 bits (159), Expect = 1e-13
 Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 15/233 (6%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           +IL++ED+ +  N L+      G+ V    +G      L +   + VV+D+ LP  +G  
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 65  XXXXXXXXXXXXXIF-LTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123
                        +  LT RD   +++ GL+ GADDYL KPF   E+  R + L+ R   
Sbjct: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121

Query: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183
           +               G KLD N  S +    Q   L   E++ +  F  N  ++ +R  
Sbjct: 122 YH-------HSVIEQAGVKLDQNQRS-VWLNNQPISLTSREYKLLELFMLNKDRVLSRSS 173

Query: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDIE 236
           + +K++  + +     +DV I  +R+           I T+HG GY   G +E
Sbjct: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL-GQVE 220


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGX-- 63
           +L+VED    R  + GI +  G+ V  A +GVE    L N + +LVV+DI +P  NG   
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 64  -XXXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118
                          I  + +  E D+  G+  GAD Y+ KPF P EL    + LL
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 58.2 bits (139), Expect = 2e-11
 Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 4/119 (3%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEG-YDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           +L+V+DE   R +++   E  G + V  A N  E    L +H   LV+ DI +P  +G  
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 65  XXXXXXXXXXXXX---IFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
                           +FLT R    D+I G + G D +L+KPF+P EL    RNLL R
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           +L+V+D+      +K   E +GY V  A NG E   +L     +++V DI +P  +G   
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 66  XXXXXXXXXXXXI---FLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121
                       I   FL+ +    +++ GL +GAD Y+ KPF P EL  + ++ L +A
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNI--NLVVMDINLPGKNGX 63
           ILVVEDE + R  +      E Y + EAENG     +L +  +  +L++ D+ +P  +G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 64  XXXXXXXXXXXXXX---IFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
                            IFLT      D   G+  GADDYL KPF   +L     N ++ 
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLL----NAVNS 119

Query: 121 AMPHQEKENTF 131
            +  Q K + F
Sbjct: 120 RLQKQAKLSAF 130


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 53.5 bits (127), Expect = 6e-10
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLP---GKN 61
           K+LVV+D   +R  L+ +  + G+ V EAENG     +  + +  +++MD+ +P   G++
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 62  GXXXXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121
                           I LT    E ++   L  G DD+L+KPF P EL       L  A
Sbjct: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVA 538

Query: 122 MPHQ 125
           +P Q
Sbjct: 539 LPSQ 542


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLP---GKN 61
           KILVV+D+ V R  L  +    G+++ EA NG E   +  +   +L+ MD+ +P   G  
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 62  GXXXXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTI 112
                           + LT    E +K + L  G DD+L KPF  RE TI
Sbjct: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF--RENTI 739


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           ILVV+D       +  + E EGY      +G E    +     +L+++D+ +PG +G   
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 66  XXXXXXXXXXXXI---FLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118
                       I   FLT  + + D +     GA DY+TKPF+P EL  R +  L
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135



 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           IL+ ED ++ +   K + +  GY V    NG E    LA  + ++V+MD+ +P  +G   
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 66  XXXXXXXXXXX----XIFLTGRDNEVDKILGLEIGADDYLTKP 104
                           I +T    E D+   L  G +DY++KP
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
           KILVV+D+   R  L+   + EG+ V  A NG E     A     +V++D  +P  +G  
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 65  ---XXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR- 120
                           + +TG D+E       E GA DY+TKP +   L  R + LL++ 
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQN 132

Query: 121 AMPHQ 125
            + HQ
Sbjct: 133 RLQHQ 137


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   TTPKILVVEDEIVTRNTLKGIF--EAEGYDVFEAENGVEMHHILANHNINLVVMDINLPG 59
           TT ++L+ +D  + R  L  I   + +   + +AENG +   +   H  ++ +MD+ +P 
Sbjct: 5   TTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPE 64

Query: 60  KNGXXXXXXX-XXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118
             G                I LT  D++ D   GL+ GA  YL K   P EL + A   +
Sbjct: 65  VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDEL-LNAIRTV 123

Query: 119 HRAMPH 124
           HR   +
Sbjct: 124 HRGQKY 129


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXXX 65
           IL+VED  + R     +  ++G  V  A NG E   +L ++  + ++MDI +P  NG   
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 66  XXXXXXXXXXX---XIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAM 122
                          I +T      D+   L+ G +D+LTKP  P        +LL + +
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP--------DLLFQTL 831

Query: 123 PHQEKENTFGREFYRFNGWKLDLNSHSL 150
            H    N+   +    +  K DL+  S+
Sbjct: 832 AHWIPPNSAREKKNPSSNLKADLSFSSM 859


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 5    KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGXX 64
            +IL+VED  + +     +    G++V  A NG+     L N+   LV+MD+ +P  +G  
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 65   XXXXXX---XXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110
                            + +T    + D+   L+ G +D+L KP  P EL
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLP---GKN 61
           K+L+VED  + R+ L      +GY+V  A +G +   +  + +  L++MD++LP   G  
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 62  GXXXXXXXXXXXXXXXIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLH 119
                           I LT      D+   +  G DDY TKP   + L  +   L++
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALIN 123


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,979
Number of Sequences: 78
Number of extensions: 903
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 26
Number of HSP's better than  0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 28
length of query: 236
length of database: 48,235
effective HSP length: 60
effective length of query: 176
effective length of database: 43,555
effective search space:  7665680
effective search space used:  7665680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-000960 HI0980  Hin recombinational enhancer binding
protein (fis)
         (99 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-000960 HI0980  Hin recombinational enhancer binding ...   194   6e-53

>HINF-KW2-01-000960 HI0980  Hin recombinational enhancer binding
          protein (fis)
          Length = 99

 Score =  194 bits (493), Expect = 6e-53
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MLEQQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVE 60
          MLEQQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVE
Sbjct: 1  MLEQQRNSADALTVSVLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVE 60

Query: 61 HPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGMG 99
          HPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGMG
Sbjct: 61 HPMLDMIMQYTRGNQTRAANMLGINRGTLRKKLKKYGMG 99


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.315    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8649
Number of Sequences: 78
Number of extensions: 277
Number of successful extensions: 2
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 99
length of database: 48,235
effective HSP length: 51
effective length of query: 48
effective length of database: 44,257
effective search space:  2124336
effective search space used:  2124336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 86 (37.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
regulatory protein (phoB)
         (231 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   463   e-133
SYNE-PCC-01-000414 sll0649                                            140   5e-36
SYNE-PCC-01-000518 sll0789                                            139   1e-35
SYNE-PCC-01-001437 slr0081                                            137   3e-35
SYNE-PCC-01-000242 sll0396                                            132   1e-33
SYNE-PCC-01-000523 sll0797                                            128   2e-32
SYNE-PCC-01-002033 slr0947                                            126   5e-32
SYNE-PCC-01-001461 slr0115                                            118   2e-29
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  118   2e-29
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   116   6e-29
SYNE-PCC-01-002672 slr1837                                            113   5e-28
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   111   2e-27
SYNE-PCC-01-002486 slr1584                                            108   2e-26
SYNE-PCC-01-000877 sll1330                                            108   2e-26
SYNE-PCC-01-002489 slr1588                                             82   2e-18
SYNE-PCC-01-002731 slr1909                                             79   1e-17
SYNE-PCC-01-002788 slr1982                                             73   7e-16
SYNE-PCC-01-001306 sll1905                                             72   2e-15
SYNE-PCC-01-002086 slr1042                                             69   1e-14
SYNE-PCC-01-002635 slr1783                                             67   4e-14
SYNE-PCC-01-001133 sll1673                                             65   2e-13
SYNE-PCC-01-002873 slr2098                                             63   7e-13
SYNE-PCC-01-001132 sll1672                                             63   9e-13
SYNE-PCC-01-002221 slr1213                                             61   3e-12
SYNE-PCC-01-002618 slr1760                                             57   5e-11
SYNE-PCC-01-000800 sll1228                                             57   5e-11
SYNE-PCC-01-002879 slr2104                                             56   1e-10
SYNE-PCC-01-000608 sll0921                                             54   3e-10
SYNE-PCC-01-002778 slr1969                                             47   5e-08
SYNE-PCC-01-002617 slr1759                                             47   5e-08
SYNE-PCC-01-001160 sll1708                                             47   5e-08
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    46   9e-08
SYNE-PCC-01-001575 slr0312                                             45   2e-07
SYNE-PCC-01-001075 sll1592                                             45   3e-07

>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  463 bits (1192), Expect = e-133
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPKLILLDWMLPGRSG 60
           MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPKLILLDWMLPGRSG
Sbjct: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPKLILLDWMLPGRSG 60

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
           IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR 180
           RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR
Sbjct: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR 180

Query: 181 IWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSSYLRDKQ 231
           IWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSSYLRDKQ
Sbjct: 181 IWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSSYLRDKQ 231


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  140 bits (352), Expect = 5e-36
 Identities = 88/228 (38%), Positives = 133/228 (58%), Gaps = 9/228 (3%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63
           ILIVED+  I ++I   L ++ +  I  +D +T +   +E  P LI+LD MLP   G++ 
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123
              I++Q       I+MLTAK  E D I  L+ GADDY+ KPFSP+ L+AR+ A+ RR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 124 EQ---QSQFIQIDELSID-ENAQRVFFQ---QQEINLSSTEFKLLHFFMRHPEKVYSREQ 176
            Q     Q  + +   +D +  Q   +Q   Q+E+ L+  EF LL  FM +P +V++R Q
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 177 LLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCE-HYIQTVRGSGYRF 223
           L+ ++W ND   + R VD++IRRLR+ + P      +I+TV G GY+F
Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  139 bits (349), Expect = 1e-35
 Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 6/227 (2%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE---NPKLILLDWMLPGRSG 60
           ++L+VEDE  +   +   L ++ Y V    D   A + + +   N  L + DWM+PG SG
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
           ++  Q ++ Q S  ++PI+MLTAK    D +  L+AGADDY+ KPF    LLAR+ ++ R
Sbjct: 62  LELCQKLRGQRS--SLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQR 119

Query: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQ-EINLSSTEFKLLHFFMRHPEKVYSREQLLN 179
           R  E Q Q +Q+ +  +D     V   +Q  I L++ EF+LL +FM+HP+++ S EQ+ N
Sbjct: 120 RSPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKN 179

Query: 180 RIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSSY 226
           ++W    E     V + +R LRR L  +   + I+TV G GYRF  +
Sbjct: 180 QLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPH 226


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  137 bits (345), Expect = 3e-35
 Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 16/235 (6%)

Query: 2   TRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAI---NKIKENP-----KLILLDW 53
           + +IL+VEDE +IRE I L L ++ Y+V    D + A+    +  E+P      LI+LD 
Sbjct: 30  SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89

Query: 54  MLPGRSGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLA 113
           MLP  +G+   + ++        PI++++AK +E + +  L  GADDYITKPFS + L+A
Sbjct: 90  MLPQVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVA 147

Query: 114 RIEAVWRR---IYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEK 170
           R  A+ RR        + F +  +L +     RV  + +E++L+  EF+LL  FM +P +
Sbjct: 148 RCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRR 207

Query: 171 VYSREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLA--PFQCEHYIQTVRGSGYRF 223
           V+SREQL+  IW  D   + +TVD +IR LR  L   P Q E Y+ TVRG GYRF
Sbjct: 208 VWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPE-YLVTVRGFGYRF 261


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  132 bits (332), Expect = 1e-33
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRS 59
           M+ ++L+VE+E  +   + L L  + YDV  A D      + +E  P LI+++  LPG S
Sbjct: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60

Query: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119
           G++  + +++  S   IPII++TAK   E+ +  L+AGADDYI KPF+     ARI    
Sbjct: 61  GLELCRRLREMGS--RIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118

Query: 120 RRIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLN 179
           RR +    + +Q  +L  + + + +    + I+L++ EF+LL + + H  +V +REQ+L 
Sbjct: 119 RRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILE 178

Query: 180 RIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGY 221
           R+W  D   +   ++ YIR LR  L        IQTVRG GY
Sbjct: 179 RVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  128 bits (321), Expect = 2e-32
 Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 13/232 (5%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN---PKLILLDWMLPGRSG 60
           +IL+VEDE  +   I   L  + Y V   +D   A + ++       L ++DW+LPG SG
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
           ++  Q ++ Q +  ++P++MLTA    E+ +  L+AGADDY+TKPF    LLAR+ A+ R
Sbjct: 62  LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119

Query: 121 RIYEQQSQFIQIDELSIDEN--------AQRVFFQQQEINLSSTEFKLLHFFMRHPEKVY 172
           R  + Q Q + +   S+D +        ++ +  ++QEI L+  EF++  + M++PE++ 
Sbjct: 120 RSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERII 179

Query: 173 SREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFS 224
           S  ++  ++W  D E     V + +R +RR LA   C   I+TV G GYRF+
Sbjct: 180 SGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFT 231


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  126 bits (317), Expect = 5e-32
 Identities = 86/231 (37%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 7   IVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQFIQ 65
           +V+DE +IR ++   LS   Y+V+ A+D + AI    E+ P L++LD M+P   G    Q
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 66  YIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIYEQ 125
            ++K+     IPIIMLTA     D I  L  GADDY+ KPFSP+ L ARI +V RR+ + 
Sbjct: 61  ELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 126 ------QSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLN 179
                  S  +QI  + ID N ++V+   + I L+  EF LL   +    + +SR ++L 
Sbjct: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQ 177

Query: 180 RIWHNDLE--VEYRTVDSYIRRLRRNLAPFQCE-HYIQTVRGSGYRFSSYL 227
            +W    E  V+ R VD +I RLR  L         I T RG+GY F   L
Sbjct: 178 EVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRIL 228


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  118 bits (295), Expect = 2e-29
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASD-FKTAINKIKENPKLILLDWMLPGRSGIQ 62
           +ILI++D+ AI +++++ L    YDV +A D  K     ++  P LI+LD MLP   G  
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
             Q +++ E  A IP++MLTA    +D I   ++GADDY+TKPF  + +LAR+ A+ RR 
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 123 -----YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQL 177
                  + S+ +    L++        +  + I L+  EF+LLH  ++   +  S   +
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 178 LNRIWHNDLEVEYRTVDSYIRRLRRNLAPF-QCEHYIQTVRGSGY 221
           L  +W  + + +  T+  +IR LR  L P  +   +I+TV G+GY
Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  118 bits (295), Expect = 2e-29
 Identities = 71/224 (31%), Positives = 127/224 (56%), Gaps = 9/224 (4%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPKLILLDWMLPGRSGIQF 63
           K+L+V+D+  + E+++  L  + +DV  A++   A+ K+ E+ KL+LLD M+P  +GI+ 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGIET 62

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123
           ++ I+K  +   +P++MLTA+  + D +  L  GADD + KPF+ + L+ARI+A+ RR  
Sbjct: 63  LKEIRKVSN---VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119

Query: 124 EQQSQFIQIDELSIDENAQR-----VFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLL 178
              +    ++ LS D            + ++ +NL+  EFK+L   ++    V SRE+L 
Sbjct: 120 SPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELS 179

Query: 179 NRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCE-HYIQTVRGSGY 221
             +    L    R++D +I  LRR L   + +  + +T+RG GY
Sbjct: 180 LEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  116 bits (291), Expect = 6e-29
 Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 13/232 (5%)

Query: 2   TRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSG 60
           T KIL+VEDE   R  +      + YDV EA +     + +   N  L+++D  LPG++G
Sbjct: 3   TPKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNG 62

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
           +   + ++++ S   +P+I LT +  E D I  L  GADDY+TKPF+P+ L  R   +  
Sbjct: 63  LLLARELREELS---LPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLH 119

Query: 121 RIYEQQS-------QFIQIDELSIDENAQRVFFQQ-QEINLSSTEFKLLHFFMRHPEKVY 172
           R    Q        +F + +   +D N+  +   + QE  L  +EF+ +  F  +P K+ 
Sbjct: 120 RAMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQ 179

Query: 173 SREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPF-QCEHYIQTVRGSGYRF 223
           +RE+LL ++   +L+ + RTVD  IRR+R++        + I T+ G GYRF
Sbjct: 180 TREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  113 bits (283), Expect = 5e-28
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 13/232 (5%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINK-IKENPKLILLDWMLPGRSGIQF 63
           IL+V+DE A+ E ++  L  + + +  A   KT +   I     L++LDWMLP  SG++ 
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR-- 121
            + I+      + P++ LTAK T +D +A L+AG DDY+ KPF  + LLAR+ A+ RR  
Sbjct: 64  CRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 122 --------IYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYS 173
                   +   ++  + ++ +S+D   Q  + Q Q I LS  E  LL  F++ P ++ S
Sbjct: 122 HGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181

Query: 174 REQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSS 225
            E++ + +W  +       + + +R LRR +        I +V G GY F +
Sbjct: 182 HEEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGYCFEA 233


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  111 bits (277), Expect = 2e-27
 Identities = 67/219 (30%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQ 62
           +IL++ED+  I   + + L++  + V   +D KT +  +   P   ++LD  LP   G++
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
            +Q  + + ++  +P+++LTA+ T ++ +  L +GADDY+ KPF+   + AR++A+ RR 
Sbjct: 62  VLQ--QWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182
           Y      I+   + +D+N + V+   Q I+L+S E+KLL  FM + ++V SR  +  ++ 
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179

Query: 183 HNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGY 221
             D E+    +D +I  LR+ L     + +I+TV G GY
Sbjct: 180 SWDEEISSGALDVHIYNLRQKLG----KQFIRTVHGVGY 214


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  108 bits (270), Expect = 2e-26
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62
           +IL+VED+  + E +A  LS + Y V  A+D   A +        L++LD MLP   GI 
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
             Q  K +     +PI+M+TA+ T  D I  L+AGADDY+ KP     L AR+ A+ RR 
Sbjct: 62  LCQ--KWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119

Query: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182
                  ++   + +D +   V +  + ++L+  E+ +L   +R+  +V SR  +++ IW
Sbjct: 120 CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIW 179

Query: 183 HNDLEVEYRTVDSYIRRLRRNL-APFQCEHYIQTVRGSGYRFSS 225
             +   E  TV  ++R LR+ L +       I+TV G GYR ++
Sbjct: 180 KLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLAN 223


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  108 bits (270), Expect = 2e-26
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63
           I +VE    +R +++  L Q  Y V + S F  A        P L ++D  L    GI+ 
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123
            +++ +Q       I +L+AK TE+D +  L AGADDY+TKPF  Q  LARIE + RR+ 
Sbjct: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122

Query: 124 EQQSQ-FIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182
              +   +    L ID   +RV +Q   ++L+  EF LL+   +      SR +LL R W
Sbjct: 123 TVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAW 182

Query: 183 HNDLEVEYRTVDSYIRRLRRNLA--PFQCEHYIQTVRGSGYRFSSYLRDKQ 231
              ++   RT+D+++  LR+ +   P Q    IQTVR  GYRF+S + +++
Sbjct: 183 PEAID-NPRTIDTHVLSLRKKIETDPRQ-PSLIQTVRNVGYRFNSSILEEK 231


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAI---NKIKENPKLILLDWMLPGRSGI 61
           IL+VEDE  IRE+I   LS + Y ++EA +   A+   N ++  P LI+ D M+P   G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 62  QFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117
             I  ++K    AAIP I LTA  T +D    +N+GADDY+ KPF  + LL  + +
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 79.3 bits (194), Expect = 1e-17
 Identities = 51/197 (25%), Positives = 104/197 (52%), Gaps = 16/197 (8%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63
           +L+V+D+  +  ++  +L  + Y V  A + + A++ +    P +I+ D M+P   G  F
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123
           I+ +++    + IP++ L+AK    + +  LN GAD Y+ KPF P+ L A++++  R   
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR--- 126

Query: 124 EQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIWH 183
            Q  + +Q +   +++NA+      +++ L+ TE K++             + L NR   
Sbjct: 127 -QADRLLQHNNHPLEDNAR--VQVARDVELTPTETKVIQLV---------AQGLANREIA 174

Query: 184 NDLEVEYRTVDSYIRRL 200
           + L+V  RTV+S++  +
Sbjct: 175 DHLKVSQRTVESHVSNM 191


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 73.2 bits (178), Expect = 7e-16
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINK-IKENPKLILLDWMLPGRSGIQ 62
           K+L+VED    R+M++  L +K Y+V+ A D + A+   I E+P+LIL+D  LP   G  
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118
             + IK     A IPII LTA +   D    + AG DDY TKP   + LL ++EA+
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 72.0 bits (175), Expect = 2e-15
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQF 63
           IL+V+D      +I+  L  + Y     +    A+ ++ +  P LILLD M+PG  G++ 
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIE 116
              +K+      IP+I LTA + ++D +     GA DY+TKPFSP  LLAR++
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132



 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 2/109 (1%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSGIQF 63
           IL+ ED    +++  L L +  Y V   ++ + A++ + K +  ++L+D  +P   G+  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 64  IQYIKKQESYAAIP-IIMLTAKSTEEDCIACLNAGADDYITKPFSPQIL 111
            ++I++ +  +  P II +TA S E D   CL +G +DY++KP   + L
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEAL 850


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQF 63
           +L+VED  + REMI+  L    + V  A D   A+ K++  +P L++LD ++P  +G + 
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120
            + IK       +P+IM ++K  E D    +  GAD YI KPF P  L+  I+ + R
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 18/223 (8%)

Query: 5   ILIVEDECAIREMIALFLSQKY-YDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62
           +L+V+DE  +RE +  FL     + V  A++   A + ++ + P L++ D M+P   G Q
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
           F+Q +++   + ++P++ LTA+    D I     G D +++KPF P  L A +  +  R 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR- 176

Query: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEI----NLSSTEFKLLHFFMRHPEKVYS--REQ 176
            +Q S     +   + E  Q +   +++I     + +T   +   F    + V     + 
Sbjct: 177 -QQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQG 235

Query: 177 LLNRIWHNDLEVEYRTVDSYIRRL--------RRNLAPFQCEH 211
           L+N+     L+   R V+ Y+ RL        R  L  F  +H
Sbjct: 236 LMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQH 278


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 64.7 bits (156), Expect = 2e-13
 Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQF 63
           IL+V+D     ++++  L    Y V   +  K A+  ++ + P LILLD  +P   G Q 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123
            + IKK+E    IPII ++A     D +     G  DYITKPF  + ++ARIE    +  
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEG---QFT 127

Query: 124 EQQSQFIQIDELSIDENAQRVFFQQQEI 151
            Q+ +     E+     A+ V +Q + +
Sbjct: 128 IQRQRIALKREVRKRREAEEVLYQSRAL 155


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 63.2 bits (152), Expect = 7e-13
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 4    KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQ 62
            +IL+VED    +E+ A  L    ++V  A++   A+ ++  N   L+L+D  +P   GI+
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 63   FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
                I++   YA +PI+ +TA   + D   CL AG +D++ KP  P       E +W ++
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEP-------EELWNKL 1038

Query: 123  YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLH 162
                  +I +D     E       ++  IN S  E  + H
Sbjct: 1039 L----HWIPVDSPLAPET-----IEESAINTSDPEISIPH 1069



 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPK------LILLDWMLP 56
           +++L+V+D    R ++   L Q  + V        A+N + E  +      ++ +DW +P
Sbjct: 771 KRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMP 830

Query: 57  GRSGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQIL---LA 113
              G++  + +K         I ++TA   EE  +   + G DD + KP SP +L   LA
Sbjct: 831 NMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLA 890

Query: 114 RIEAVWRRIYEQ--QSQFIQIDELSIDE-----NAQRVFFQQQEIN 152
           R+      + ++  QS  I  ++L++++      A+ +  +  EIN
Sbjct: 891 RVLGDPTALAQEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEIN 936


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 62.8 bits (151), Expect = 9e-13
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62
           KIL+V+D+   R+++   L+   +++ EAS+ + AI   +   P LI +D  +P   G +
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPF 106
             +YIK Q    A  ++ LTA   EE+    L+AG DD++ KPF
Sbjct: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 1   MTRKILIVEDECAIREMIALFLSQKYYDV-IEASDFKTAINKIKE-NPKLILLDWMLPGR 58
           M  KILIVEDE  + + IA  L    Y++ + ASD  TA+ KI E  P L+LLD  + G 
Sbjct: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60

Query: 59  SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARI 115
             I  I+  ++ +S  +IPI+ LTA S  E            Y+ KPF  + LL+ +
Sbjct: 61  --IDGIEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62
           KIL+V+D+  +R  + ++L ++ + V  A++ + A+ K  E  P+++LLD ++P   G  
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122
             Q + K     +  ++M+T    E        AGA DY+TKP    +L  R++   R +
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVK---RLL 129

Query: 123 YEQQSQ 128
           Y+ + Q
Sbjct: 130 YQNRLQ 135


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)

Query: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGI 61
           +K+L+V+D    R ++   L+   + V EA + + AI   +  +P++IL+D  +P   G 
Sbjct: 418 QKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGR 477

Query: 62  QFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLA 113
              Q IK         II LTA + E +    L+AG DD+++KPF P+ L+A
Sbjct: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQF 63
           IL+VED    RE     L+ K   V  A++ + A+  +  N    IL+D  +P  +G   
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQIL 111
            + I++QE +  +PII +TA +   D    L+AG +D++TKP  P +L
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLL 827


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 4   KILIVEDECAIREMI--ALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSG 60
           +I ++EDE  IR+ +  AL +   +  V EA++ +  +  +++  P ++++D  LP  +G
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117
           I   Q +KK        +++LT    EE  +A  +AGAD Y  K    ++L+  I+A
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQF 63
           ++++E +  I  +I   L+   Y VI   D   A+ +++   P LI++D      + +  
Sbjct: 632 VIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDFVDVTEVT- 690

Query: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118
            + IKK    + + + +L+   +  +  A    G DDY+ KP  P++LL R++++
Sbjct: 691 -RGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRVQSI 744


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 4    KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSGIQ 62
            +IL+ ED    +++    L+   Y V  A++ +  I+ + K+   L+L+D  +P   GI 
Sbjct: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250

Query: 63   FIQYIKKQESYAAIP-IIMLTAKSTEEDCIACLNAGADDYITKPFS 107
              ++I++       P I+ +TA +   D   CL+AG D YI+KP S
Sbjct: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPIS 1296


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 4   KILIVEDECAIREMIALFL-SQKYYDVIEASD--FKTAINKIKENPKLILLDWMLPGRSG 60
           KILIVED+  ++  +   L + + +++I   D  +         NP LI++D  LPG  G
Sbjct: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117
           I+  + IK  ++   I I++LT+ +   + IA L++GAD Y  K  + + L+  I A
Sbjct: 78  IEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA 132


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 46.2 bits (108), Expect = 9e-08
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 4   KILIVEDECAIREMIALF--LSQKYYDVIEASDFKTAIN-KIKENPKLILLDWMLPGRSG 60
           K+L+++D   +R  I     L   +  V + S     I+  ++ +P +I+LD  + G SG
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118
           +  ++ ++ +   A I  ++LT    + D    ++AGAD Y+ K   P  LL +I+ +
Sbjct: 66  LDTLKGLRAEGVDARI--LILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 2   TRKILIVEDECAIREMIALFLSQK--YYDVIEASDFKTAINKIKEN-PKLILLDWMLPGR 58
           T ++LI +D    R+ +A  +++      + +A + + AI   +E+ P + L+D  +P  
Sbjct: 6   TIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEV 65

Query: 59  SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118
            G+  I  I     +A I  I+LT   ++ED    L AGA  Y+ K   P  LL  I  V
Sbjct: 66  EGVAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTV 123

Query: 119 WR 120
            R
Sbjct: 124 HR 125


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 4   KILIVEDECAIREMIALFLSQKY-YDVI-EASDFKTAINKIKENP-KLILLDWMLPGRSG 60
           +IL+VED+   R  +   LSQ+   DV  EA D +TAI  + +    +++LD  LPG  G
Sbjct: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68

Query: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV-- 118
           I+    IKK   +  +P+++LT+ S        + A A  Y  K  + + L+  I +V  
Sbjct: 69  IEACHQIKK--IHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAA 126

Query: 119 ----WRRIYEQQSQ 128
               W  I  Q+ Q
Sbjct: 127 GAFWWDAIASQEIQ 140


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.324    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,170
Number of Sequences: 78
Number of extensions: 973
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 37
length of query: 231
length of database: 48,235
effective HSP length: 60
effective length of query: 171
effective length of database: 43,555
effective search space:  7447905
effective search space used:  7447905
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
(ygiX)
         (221 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   438   e-126
SYNE-PCC-01-002486 slr1584                                            162   6e-43
SYNE-PCC-01-000523 sll0797                                            136   5e-35
SYNE-PCC-01-000518 sll0789                                            134   3e-34
SYNE-PCC-01-002672 slr1837                                            133   4e-34
SYNE-PCC-01-001461 slr0115                                            128   1e-32
SYNE-PCC-01-000242 sll0396                                            128   2e-32
SYNE-PCC-01-002033 slr0947                                            124   2e-31
SYNE-PCC-01-001437 slr0081                                            122   7e-31
SYNE-PCC-01-000414 sll0649                                            120   3e-30
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   111   2e-27
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  110   4e-27
SYNE-PCC-01-000877 sll1330                                             90   7e-21
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    77   5e-17
SYNE-PCC-01-002731 slr1909                                             75   1e-16
SYNE-PCC-01-001306 sll1905                                             73   9e-16
SYNE-PCC-01-001133 sll1673                                             67   4e-14
SYNE-PCC-01-002879 slr2104                                             62   2e-12
SYNE-PCC-01-002788 slr1982                                             60   8e-12
SYNE-PCC-01-002635 slr1783                                             60   8e-12
SYNE-PCC-01-002086 slr1042                                             60   8e-12
SYNE-PCC-01-000608 sll0921                                             60   8e-12
SYNE-PCC-01-001075 sll1592                                             59   1e-11
SYNE-PCC-01-002873 slr2098                                             58   2e-11
SYNE-PCC-01-002489 slr1588                                             56   1e-10
SYNE-PCC-01-001160 sll1708                                             55   1e-10
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    55   1e-10
SYNE-PCC-01-002618 slr1760                                             53   9e-10
SYNE-PCC-01-000800 sll1228                                             52   2e-09
SYNE-PCC-01-002617 slr1759                                             48   2e-08
SYNE-PCC-01-001132 sll1672                                             44   4e-07

>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  438 bits (1126), Expect = e-126
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60
           MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120
           EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180
           GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 181 WDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK 221
           WDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
Sbjct: 181 WDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK 221


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  162 bits (411), Expect = 6e-43
 Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60
           MRILL+EDD  +   L   L+   + VD  TD        +   YD V+LD+ LP+LDG+
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60

Query: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120
            + Q+WRS+   +P+L++TARDT+++++ GL +GADDY+ KP  L E+ AR++AL+RR  
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180
                V+E   ++LD +   V  +N+ +SLT +EY +LEL + N  RVLSRS I + +  
Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180

Query: 181 WDEEISSGALDVHIYNLRQK-----LGKQFIRTVHGVGYALGQV 219
            +       + VH+ +LRQK     L    I TVHG+GY L  +
Sbjct: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANL 224


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  136 bits (343), Expect = 5e-35
 Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTS--APYDAVVLDLTLPKLD 58
           MRILL+ED+  +G  ++  L    + VDW TDG      L +    Y   ++D  LP L 
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60

Query: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
           GLE+ Q+ R+    +PVL+LTA    + RV+GL +GADDYL KPF +AE+ ARL+AL RR
Sbjct: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR 120

Query: 119 RYGYHHSVIEQAGVKLD--QNQRSVW------LNNQPISLTSREYKLLELFMLNKDRVLS 170
              +   ++      LD   N  SV       L  Q I+LT RE+++ +  M N +R++S
Sbjct: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180

Query: 171 RSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQF----IRTVHGVGY 214
            S I ++L   DEE  S  +   +  +R+KL +Q     I+TV G GY
Sbjct: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGY 228


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  134 bits (336), Expect = 3e-34
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSA--PYDAVVLDLTLPKLD 58
           MR+LL+ED+  +G  L+  L +  + VDW  DG    + L      Y   + D  +P L 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
           GLE+ Q+ R     +P+L+LTA+D + +RV+GL +GADDYL KPF +AE+ ARL++L RR
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 119 RYGYHHSVIEQAGVKLDQNQRSVWLNNQP-ISLTSREYKLLELFMLNKDRVLSRSSIEEK 177
                   ++     LD    +V    Q  I+LT++E++LLE FM +  ++LS   I+ +
Sbjct: 121 SPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 178 LSSWDEEISSGALDVHIYNLRQKLGK----QFIRTVHGVGY 214
           L +   E +S  +   +  LR+KL +      I TV+G+GY
Sbjct: 181 LWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGY 221


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  133 bits (335), Expect = 4e-34
 Identities = 83/227 (36%), Positives = 122/227 (53%), Gaps = 16/227 (7%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           ILL++D+N +   L   L   G  +D    GKTG+A   +  YD ++LD  LP++ GLE+
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 63  LQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGY 122
            +Q R      PVL LTA+DTLD+RV GL +G DDYL KPF L E+ AR++AL+RR+  +
Sbjct: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQ-SH 122

Query: 123 HHSVIEQAG-----------VKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSR 171
             ++ E  G           V LD   +  +   Q I+L+ +E  LL LF+    ++LS 
Sbjct: 123 GETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182

Query: 172 SSIEEKLSSWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGY 214
             I   L   +   SS  L   +  LR+K+      + I +V+G GY
Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGY 229


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  128 bits (322), Expect = 1e-32
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           RIL+I+DD  I + + I L   G+ V    DG  G A       D ++LDL LPK+DG  
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLQQWRSNHQ--DVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR- 118
           V Q+ R + +  D+PVL+LTA   + ++++G  SGADDYL KPF + E+ AR++AL+RR 
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 119 ----RYGYHHSVIEQAGVKL-DQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSS 173
               +   H  ++ Q  + L  +   ++W   + I LT  E++LL   +    + +S S 
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWF-GKSIKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216
           I  ++  ++ +     + VHI +LR KL       +FI+TV+G GY L
Sbjct: 182 ILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  128 bits (321), Expect = 2e-32
 Identities = 69/219 (31%), Positives = 128/219 (58%), Gaps = 4/219 (1%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           R+L++E++  +   +++ L   G+ V    DG  G       P D ++++  LP + GLE
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121
           + ++ R     +P++++TA+D ++ERV GL +GADDY+ KPF   E  AR++  +RR + 
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 122 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSW 181
               V++ A ++ +++ R +   ++ I LT++E++LL+  + +  +VL+R  I E++  +
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183

Query: 182 DEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216
           D    S  ++V+I  LR KL      + I+TV GVGY L
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  124 bits (312), Expect = 2e-31
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 14/228 (6%)

Query: 5   LIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQ 64
           +++D+  I   L+  L+ +G+ V    DG+  +A    +  D VVLD+ +PKLDG  V Q
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  QWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR--RYGY 122
           + R    D+P+++LTA   + +R+ GL+ GADDY+ KPF+  E+ AR+++++RR  + G 
Sbjct: 61  ELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 123 ----HHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL 178
                  V++ A +++D N+R V+  ++ I LT  E+ LLEL +       SRS I +++
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 179 SSWDEE--ISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQV 219
             +  E  + +  +DVHI  LR KL       + I T  G GY   ++
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRI 227


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  122 bits (307), Expect = 7e-31
 Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTS-------APYDAVVLDLTL 54
           RIL++ED+  I   + + L + G+ V    DG+  +A L         A  D ++LD+ L
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 55  PKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQA 114
           P+++GL+V +  R    + P+LI++A+ +  E+V GL+ GADDY+ KPF+L E+ AR +A
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 115 LIRRRYGYHHSVI---EQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSR 171
           +IRR+    +++    +   + L   +  V +  + +SL  +E++LLELFM    RV SR
Sbjct: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211

Query: 172 SSIEEKLSSWDEEISSGALDVHIYNLRQKLGK-----QFIRTVHGVGYALG 217
             + E +   D    S  +DVHI  LR+KL +     +++ TV G GY  G
Sbjct: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRFG 262


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  120 bits (302), Expect = 3e-30
 Identities = 87/226 (38%), Positives = 123/226 (54%), Gaps = 14/226 (6%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           IL++EDD  I   ++  L +  F      DG+TG+        D +VLDL LPKLDGLEV
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 63  LQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR-- 118
             + R     +D  +L+LTA+    +R+ GL +GADDYL KPF+  E+ AR++AL+RR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 119 RYGYHHSVIEQAG---VKLDQNQRSVWLNN--QPISLTSREYKLLELFMLNKDRVLSRSS 173
           R G     I +     V LDQ+Q S +  +  + + LT  E+ LL  FM    RV +R+ 
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGY 214
           + EKL   D       +D HI  LR+K+        FI+TV G+GY
Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGY 239


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  111 bits (277), Expect = 2e-27
 Identities = 67/219 (30%), Positives = 125/219 (57%), Gaps = 7/219 (3%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           +IL++ED+  I   + + L++  + V   +D KT +  +   P   ++LD  LP   G++
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQ 62

Query: 62  VLQ--QWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
            +Q  + + ++  +P+++LTA+ T ++ +  L +GADDY+ KPF+   + AR++A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179
           Y      I+   + +D+N + V+   Q I+L+S E+KLL  FM + ++V SR  +  ++ 
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 180 SWDEEISSGALDVHIYNLRQKLG----KQFIRTVHGVGY 214
             D E+    +D +I  LR+ L     + +I+TV G GY
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGY 221


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  110 bits (275), Expect = 4e-27
 Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 22/230 (9%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           ++LL++DD  +   L   L   GF V+   +G   +  L  + Y  V+LD+ +PKL+G+E
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61

Query: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121
            L++ R    +VPV++LTAR    +RV GL+ GADD L KPF   E+ AR++A++RR   
Sbjct: 62  TLKEIRKV-SNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120

Query: 122 YHHS-----VIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSI-- 174
             ++     ++   G+ L  +      N + ++LT  E+K+L L + +K  V+SR  +  
Sbjct: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180

Query: 175 ---EEKLSSWDEEISSGALDVHIYNLRQKLGKQ-----FIRTVHGVGYAL 216
              E+ L+ +D      +LD+HI NLR+KL K+     + +T+ G GYAL
Sbjct: 181 EVMEKPLTPFDR-----SLDMHISNLRRKLPKRKNKPSWFKTLRGKGYAL 225


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 89.7 bits (221), Expect = 7e-21
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           I ++E +  + + L   L + G+ V   +       A  +      V+D  L   DG+E+
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 63  LQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGY 122
            +     HQ + + IL+A+DT  + V GL++GADDYL KPF + E  AR++ LIRR    
Sbjct: 66  CRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTV 124

Query: 123 HHSVIEQAGV-KLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSW 181
              ++   GV K+D  QR V      + LT +E+ LL +    +   LSR+ +  +  +W
Sbjct: 125 AAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR--AW 182

Query: 182 DEEISS-GALDVHIYNLRQKL-----GKQFIRTVHGVGY 214
            E I +   +D H+ +LR+K+         I+TV  VGY
Sbjct: 183 PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 77.0 bits (188), Expect = 5e-17
 Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 15/233 (6%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           +IL++ED+ +  N L+      G+ V    +G      L +   + VV+D+ LP  +GL 
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121
           + ++ R     +P++ LT RD   +++ GL+ GADDYL KPF   E+  R + L+ R   
Sbjct: 65  LARELREE-LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123

Query: 122 YH-------HSVIEQAGVKLDQNQRS-VWLNNQPISLTSREYKLLELFMLNKDRVLSRSS 173
           +               G KLD N  S +    Q   L   E++ +  F  N  ++ +R  
Sbjct: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183

Query: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL-GQVE 220
           + +K++  + +     +DV I  +R+           I T+HG GY   G +E
Sbjct: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDIE 236


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 17/202 (8%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           +LL++DD  +   ++  L   G+ V    +G+  +  LT+   D +V D+ +P++DG   
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 63  LQQWRSNHQD--VPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120
           ++Q R N     +PV+ L+A+     RVKGL  GAD Y+ KPF   E+AA++Q+ +R+  
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA- 128

Query: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180
                +++     L+ N R     +  + LT  E K+++L      + L+   I + L  
Sbjct: 129 ---DRLLQHNNHPLEDNARVQVARD--VELTPTETKVIQLVA----QGLANREIADHL-- 177

Query: 181 WDEEISSGALDVHIYNLRQKLG 202
              ++S   ++ H+ N+  K G
Sbjct: 178 ---KVSQRTVESHVSNMLNKTG 196


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 72.8 bits (177), Expect = 9e-16
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 24  GFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQ--DVPVLILTAR 81
           G++  + T G   +  +T A  D ++LDL +P +DGLEV  + + + Q  D+PV+ LTA 
Sbjct: 41  GYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTAS 100

Query: 82  DTLDERVKGLQSGADDYLCKPFALAEVAARLQA---LIRRRYGYHHSVIEQA 130
           +   + ++    GA DY+ KPF+  E+ AR++    L + R   HH+++EQA
Sbjct: 101 NEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQTRDNLHHTLLEQA 152



 Score = 63.2 bits (152), Expect = 7e-13
 Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 4   LLIEDDNLIGNGL-QIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL-- 60
           +L+ +DNLI   + ++ L KLG+ VD   +G+  ++AL    YD V++D+ +P++DGL  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 61  -EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQ 113
            E +++ +   +   ++ +TA     +R + L SG +DY+ KP  L  +   LQ
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 3   ILLIEDDNLIGNGLQIG---LTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDG 59
           ILL++D   + N LQ+    L  LG+ V   T GK  +  L     D ++LD+ +P +DG
Sbjct: 11  ILLVDD---LPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDG 67

Query: 60  LEVLQQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQ 113
            +V +  +     QD+P++ ++A     ++VK  + G  DY+ KPF + EV AR++
Sbjct: 68  YQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           ILL+ED+ +        LT  G  V    +G+  +  LTS  YDA+++D+ +P L+G + 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 63  LQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKP 102
            +  R    H+++P++ +TA     ++ K L +G +D+L KP
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           ++LL+ED+ +  + L   L + G+ V    DG+  +    S     +++D++LP +DG  
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 62  VLQQWRSNHQD---VPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALI 116
             +Q +  H D   +P++ LTA     +R + + +G DDY  KP  +  +  +++ALI
Sbjct: 66  ATKQIKG-HPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLG-FAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           +LL++D+  +   +Q  L   G F VD   +       L       V+ D+ +P++DG +
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 62  VLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
            LQ+ R +   Q +PV+ LTAR    +R++G Q+G D +L KPF   E+ A ++ L+ R+
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           +LL+ED +     +   L   G+ V    DG   +  L +   D VVLD+ +P+++G EV
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 63  LQQWRSNHQ--DVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIR 117
            ++ +S+ +  +VPV++ +++    +R  G++ GAD Y+ KPF   E+   ++ L+R
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 33/217 (15%)

Query: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWF---TDGKTGMAALTSAPYDAVVLDLTLPKL 57
           +RI LIED++LI  GLQ  LT +  + +W     +G+ G+  +     D V++D+ LP +
Sbjct: 4   IRIALIEDEDLIRQGLQDALT-MEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDM 62

Query: 58  DGLEVLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQAL 115
           +G++V QQ +    +    V+ILT  D  +  +    +GAD Y  K        +R + L
Sbjct: 63  NGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKD-------SRTELL 115

Query: 116 IRRRYGYH-----------HSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLN 164
           I      H             V+  A         S    +    LT RE ++L+L +  
Sbjct: 116 IEAIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDG 175

Query: 165 KDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201
                S + I EKL      I+ G +  H+ N+  KL
Sbjct: 176 ----CSNADIAEKL-----YITVGTVKTHVRNILNKL 203


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%)

Query: 1   MRILLIEDDNLIGNGL------QIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTL 54
           +RILL+EDD L   GL      + GL   G A     DG+T +A +    +D V+LD+ L
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEA----EDGETAIAYVNQQLFDVVILDVGL 63

Query: 55  PKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQA 114
           P + G+E   Q +  H  +PVLILT+        + +++ A  Y  K  A   +   +++
Sbjct: 64  PGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123

Query: 115 LIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPIS-------LTSREYKLLELFMLNKDR 167
           +    + +     ++       +  +  +   P++       LT RE ++L L    K  
Sbjct: 124 VAAGAFWWDAIASQEIQTAFQHSSSTGAV--LPLADADGENPLTKRELEILSLVAKGK-- 179

Query: 168 VLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201
             S   I ++L      I+ G + VH++ + +KL
Sbjct: 180 --SNQEIADEL-----YIAPGTVRVHVHTILRKL 206


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 58.2 bits (139), Expect = 2e-11
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 2    RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
            RILL+ED+ +        L  +GF VD   +G   +  L +  Y  V++D+ +P++DG+E
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 62   VLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARL 112
                 R N  +  +P++ +TA     +R + LQ+G +D+L KP    E+  +L
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038



 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSA-----PYDAVVLDLTLPK 56
           R+L+++D++     ++  L ++ F V+    G   +  L  A     P+  V +D  +P 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 57  LDGLEVLQQWRS---NHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFA 104
           +DGLEV ++ ++   NHQ   + I+TA    +  VK    G DD L KP +
Sbjct: 832 MDGLEVARRLKAMGLNHQP-SIFIVTAYGREELFVKAKSLGIDDVLVKPIS 881


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPY--DAVVLDLTLPKLDGL 60
           IL++ED+ +I   +   L+   + +    +G   +  L S     D ++ D+ +P++DG 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 61  EVLQQWRSNHQD--VPVLILTARDTLDERVKGLQSGADDYLCKPF----ALAEVAARLQA 114
            ++   + N +   +P + LTA  T+ +  KG+ SGADDYL KPF     L  V +RLQ 
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123

Query: 115 LIRRRYGYHHSV 126
             +    Y  S+
Sbjct: 124 QAKLSAFYQGSI 135


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 1   MRILLIEDDNLIGNGLQ--IGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLD 58
           M+IL++EDD L+  GL+  +G  +    +    +G   +        D +V+D+ LP LD
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAE----VAARLQA 114
           G+E  +Q +     + +++LT+    +E +  L SGAD Y  K   L      +AA    
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136

Query: 115 LIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSI 174
                      V+E     + + Q  V       SL+ RE  +L+L +  K    S   I
Sbjct: 137 ATYLDPQIARVVVENLKPPVPEGQADV------SSLSEREIDVLKLIVEGK----SNQEI 186

Query: 175 EEKLSSWDEEISSGALDVHIYNLRQKL 201
            + L      +S+  +  H+  +  KL
Sbjct: 187 AQTL-----YLSTNTIKTHVRGIMNKL 208


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 34/211 (16%)

Query: 1   MRILLIEDDNLIGNGLQ--IGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLD 58
           +++LLI+D  L+  G++  + L      V   + G  G++       D ++LDL +  L 
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64

Query: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCK---PFALAEVAARLQAL 115
           GL+ L+  R+   D  +LILT  D  ++    + +GAD YL K   P  L E   R    
Sbjct: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR---- 120

Query: 116 IRRRYGYHHSVIEQAGVKLDQNQRSVWL-----NNQPISLTSREYKLLELFMLNKDRVLS 170
                      I Q  V L  + +++ L     +N   SLT RE  +L          LS
Sbjct: 121 -----------IAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATG----LS 165

Query: 171 RSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201
              I  +L      IS   + VHI NL +KL
Sbjct: 166 NKQIAAQLF-----ISEETVKVHIRNLLRKL 191


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 52.8 bits (125), Expect = 9e-10
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           +IL+++DD  +   L++ L K G  V+  T+G+  +        + V+LD  +P +DG  
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 62  VLQQWRSNHQDVP--VLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALI 116
             Q     +Q+    VL++T  D      +  ++GA DY+ KP   A +  R++ L+
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
           ++L+++D       L+  LT LGF V    +G+  +A   S     +++D+ +P LDG  
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 62  VLQQWRSNHQDVPVLI--LTARDTLDERVKGLQSGADDYLCKPFALAEVAARL 112
             Q+ +++ Q    +I  LTA     ER + L +G DD+L KPF   E+ A L
Sbjct: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALL 531


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 4    LLIEDDNLIGNGLQIG-LTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
            +L+ +DNL+   +    L  LG+ V    +G+  + AL    YD V++D+ +P +DG+  
Sbjct: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251

Query: 63   LQQWRSN---HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQ 113
             +  R      +   ++ +TA     +R + L +G D Y+ KP ++ ++   LQ
Sbjct: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305



 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 2    RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAP-YDAVVLDLTLPKLDGL 60
            ++L+++D+      LQ      G     FT G++ +      P  DA +LDL +P +DG+
Sbjct: 1035 QVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPNMDGI 1094

Query: 61   EVLQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADD 97
             +    R  +  +D+P+++L++         GL +GAD+
Sbjct: 1095 TLAHHLRQFAQGKDLPIILLSS---------GLVAGADE 1124


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 43.9 bits (102), Expect = 4e-07
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 4   LLIEDDNLIGNGLQIGL-TKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62
           +L+ DD  +   L I L    GF ++  ++G+  +A   S     + +D+ +P +DG E 
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691

Query: 63  LQQWRSNHQD--VPVLILTARDTLDERVKGLQSGADDYLCKPF 103
            +  +   +     V+ LTA    +E+   L +G DD+L KPF
Sbjct: 692 TKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,012
Number of Sequences: 78
Number of extensions: 944
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 31
Number of HSP's better than  0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 36
length of query: 221
length of database: 48,235
effective HSP length: 59
effective length of query: 162
effective length of database: 43,633
effective search space:  7068546
effective search space used:  7068546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
         (1805 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)      3217   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036      135   9e-34
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443    117   4e-28
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...   108   1e-25
MGEN-G37-01-000335 MG328  conserved hypothetical protein              103   5e-24
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054     76   1e-15
SYNE-PCC-01-000727 sll1120                                             69   1e-13
SYNE-PCC-01-001071 sll1583                                             59   2e-10
SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,...    55   1e-09
SYNE-PCC-01-000943 sll1424                                             44   3e-06

>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score = 3217 bits (8340), Expect = 0.0
 Identities = 1680/1805 (93%), Positives = 1680/1805 (93%)

Query: 1    MKPFDKKPSLQPIYDIGFDDGYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKGL 60
            MKPFDKKPSLQPIYDIGFDDGYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKGL
Sbjct: 1    MKPFDKKPSLQPIYDIGFDDGYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKGL 60

Query: 61   KNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQ 120
            KNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQ
Sbjct: 61   KNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQ 120

Query: 121  QENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALL 180
            QENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALL
Sbjct: 121  QENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALL 180

Query: 181  QNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENID 240
            QNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENID
Sbjct: 181  QNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENID 240

Query: 241  QNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVA 300
            QNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVA
Sbjct: 241  QNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVA 300

Query: 301  KQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFA 360
            KQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFA
Sbjct: 301  KQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFA 360

Query: 361  KHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREI 420
            KHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREI
Sbjct: 361  KHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREI 420

Query: 421  DTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAI 480
            DTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAI
Sbjct: 421  DTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAI 480

Query: 481  FQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEA 540
            FQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEA
Sbjct: 481  FQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEA 540

Query: 541  KHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKL 600
            KHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKL
Sbjct: 541  KHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKL 600

Query: 601  FQERTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLINQREHKELVASVEKQ 660
            FQERTYFERNAAVLSN              TLDQLTKSFEQERLINQREHKELVASVEKQ
Sbjct: 601  FQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQ 660

Query: 661  KEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQL 720
            KEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQL
Sbjct: 661  KEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQL 720

Query: 721  NQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAY 780
            NQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAY
Sbjct: 721  NQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAY 780

Query: 781  FEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLN 840
            FEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLN
Sbjct: 781  FEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLN 840

Query: 841  HDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYXX 900
            HDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIY  
Sbjct: 841  HDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYEL 900

Query: 901  XXXXXXXXXXXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLE 960
                            IAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLE
Sbjct: 901  TKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLE 960

Query: 961  LDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYE 1020
            LDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYE
Sbjct: 961  LDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYE 1020

Query: 1021 LKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDXXXXXXXXXXXXXXXX 1080
            LKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFD                
Sbjct: 1021 LKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRS 1080

Query: 1081 XSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAK 1140
             SQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAK
Sbjct: 1081 LSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAK 1140

Query: 1141 KAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIE 1200
            KAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIE
Sbjct: 1141 KAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIE 1200

Query: 1201 KQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDL 1260
            KQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDL
Sbjct: 1201 KQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDL 1260

Query: 1261 KENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFL 1320
            KENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFL
Sbjct: 1261 KENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFL 1320

Query: 1321 SNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNND 1380
            SNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNND
Sbjct: 1321 SNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNND 1380

Query: 1381 FAKFSRQREEFENQRXXXXXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEF 1440
            FAKFSRQREEFENQR              NSNNFKTKAIQEIENSYKRGMEELNFQKKEF
Sbjct: 1381 FAKFSRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELNFQKKEF 1440

Query: 1441 DKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKEL 1500
            DKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKEL
Sbjct: 1441 DKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKEL 1500

Query: 1501 KAFKDKVDQDIDSTXXXXXXXXXXXXXXXXXXXSLIERERAINSKDSLLNKKIETIKRQL 1560
            KAFKDKVDQDIDST                   SLIERERAINSKDSLLNKKIETIKRQL
Sbjct: 1501 KAFKDKVDQDIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIETIKRQL 1560

Query: 1561 HDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYL 1620
            HDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYL
Sbjct: 1561 HDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYL 1620

Query: 1621 YPWLYPQQKQDDNTLQIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKLDQIQLESQLN 1680
            YPWLYPQQKQDDNTLQIR                             KKLDQIQLESQLN
Sbjct: 1621 YPWLYPQQKQDDNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQLESQLN 1680

Query: 1681 NKQSEFSKVESMMEKLLEKTESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPSYQDSDK 1740
            NKQSEFSKVESMMEKLLEKTESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPSYQDSDK
Sbjct: 1681 NKQSEFSKVESMMEKLLEKTESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPSYQDSDK 1740

Query: 1741 QQLLFRIQELEKQNLXXXXXXXXXXXXXXPTSFAAPNITKQQQIAQLNAEINNIKRLIAQ 1800
            QQLLFRIQELEKQNL              PTSFAAPNITKQQQIAQLNAEINNIKRLIAQ
Sbjct: 1741 QQLLFRIQELEKQNLFQQQFQPAPAVVQQPTSFAAPNITKQQQIAQLNAEINNIKRLIAQ 1800

Query: 1801 KAASK 1805
            KAASK
Sbjct: 1801 KAASK 1805


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score =  135 bits (341), Expect = 9e-34
 Identities = 201/1063 (18%), Positives = 439/1063 (41%), Gaps = 177/1063 (16%)

Query: 35   DVDKIENQLLK---EIKSLEDELKNL-----KGLKNQAEDNPELDKKINHLEVDLNRLVN 86
            +V+K++ Q  K   EI SL+ E ++      + L     ++ ELD+K   L    + L  
Sbjct: 731  EVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKE 790

Query: 87   EYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLN 146
             +   + +  ++ D + E+  L    ++ L    +EN          L  +++  H K  
Sbjct: 791  NFSILETELKNVRDSLDEMTQL----RDVLETKDKENQ-------TALLEYKSTIH-KQE 838

Query: 147  DFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQ 206
            D  + +E   +TI    +K     N +  ++  L      VE+    L    Q   +   
Sbjct: 839  DSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNL----QKEKDKSN 894

Query: 207  LENQKRLLSIEYE------------NTYRELVSADNELQNVYENIDQNQIQFKHQYQTYR 254
            + +QK   S++ +                E+    N L    E+I +  +++K ++Q++ 
Sbjct: 895  VNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHD 954

Query: 255  DELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNA 314
            + +++L  K++       D +                  AE + + K +      +    
Sbjct: 955  NLVAKLTEKLKSLANNYKDMQ------------------AENESLIKAVEESKNESSIQL 996

Query: 315  QHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQ 374
             ++++K+ ++++EK+    ++ +     +     I+ L+Q  E      +  ++E+E + 
Sbjct: 997  SNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQI 1056

Query: 375  SDSLLKLETEYKALQHKINEFKNESATKSE---ELL---NQERELFEKRREIDTLLTQAS 428
            S    KLET   A    +N+    + T+ E   EL    N + EL  K    +  L +  
Sbjct: 1057 SLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVK 1116

Query: 429  LEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKE-RNLLDQQKKVD----------S 477
               EH +E    L+ +  E KQ   +L    + L+KE  +L  Q KK +          +
Sbjct: 1117 ENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYN 1176

Query: 478  EAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFF------EKQLKQHQADFEN--- 528
            E I QL +++   ++E E +    K+K D+ E E+         +  LK+ + D  N   
Sbjct: 1177 EEISQLNDEITSTQQENESI----KKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQI 1232

Query: 529  -ELEAKQQ----ELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFE 583
             EL+ K +     L E+  ++E   +K+++ + + N K ++++    +LK  + K++ + 
Sbjct: 1233 KELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKY- 1291

Query: 584  LMLQNEYENLQQE-----------KQKLFQERTYFERNAAVLSNXXXXXXXXXXXXXXTL 632
            L LQ E E +++E            +K+       E++ + LS                L
Sbjct: 1292 LELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQL 1351

Query: 633  DQL-------TKSFEQER-LINQ------REHKELVASVE-------KQKEILGKKL--- 668
            ++L        ++FE+ER L+N+      +E+ E + ++E        + E+  K++   
Sbjct: 1352 EKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNT 1411

Query: 669  -QDFSQTSLNASKNLAEREMAIK--------FKEK-----------------EIEATEKQ 702
              +  + SL+  + L E++  IK        +K+K                 ++E+ ++Q
Sbjct: 1412 RSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQ 1471

Query: 703  LLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQE 762
            L     +   ++  L +L +  ++E++EL+ +K+ +    +       E + S++   + 
Sbjct: 1472 LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKS 1531

Query: 763  LQTLEANQK---------QHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRL 813
             + LE ++K         QH   +      E +K   E ++ L +  K   E++ +KQ L
Sbjct: 1532 DEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQEL 1591

Query: 814  SDKHQALNMQQAE---LDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALL 870
            ++  + + +   E   L  K  ++     +  A+ KS Q++   +    K ++ E  +  
Sbjct: 1592 NNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQ 1651

Query: 871  EKQREFAENVAGFKRHWSNKTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQVFE 930
            +K ++  E      R +  + SQL +                      ++DL    Q ++
Sbjct: 1652 QKAQKSEEERRAEVRKFQVEKSQLDE--------------KAMLLETKYNDLVNKEQAWK 1697

Query: 931  LQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQ 973
              +D   +  +++++E++KLA++ + +K E     +A +++ +
Sbjct: 1698 RDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSE 1740



 Score =  129 bits (324), Expect = 8e-32
 Identities = 205/1073 (19%), Positives = 441/1073 (41%), Gaps = 167/1073 (15%)

Query: 642  ERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEK 701
            E  IN+   +E V  +++Q   L  ++      + +  +NL E+ +A+  + KE++  + 
Sbjct: 721  EEPINKISFEE-VEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDE-KY 778

Query: 702  QLLNDVN-----NAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSL 756
            Q+LN  +     N  +++ +L  +  SL+    E+   +  +     ++   L EY+ ++
Sbjct: 779  QILNSSHSSLKENFSILETELKNVRDSLD----EMTQLRDVLETKDKENQTALLEYKSTI 834

Query: 757  QKRLQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDK 816
             K+   ++TLE   +    Q +   +G ++K+ ++  A        + E+ A+++     
Sbjct: 835  HKQEDSIKTLEKGLETILSQKKKAEDG-INKMGKDLFAL-------SREMQAVEENCK-- 884

Query: 817  HQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREF 876
                N+Q+        E + + +NH  + KSL++ +A      K I+      LE+ +  
Sbjct: 885  ----NLQK--------EKDKSNVNHQKETKSLKEDIAAKITEIKAINEN----LEEMKIQ 928

Query: 877  AENVAGFKRHWSNKTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQ----VFELQ 932
              N++  K H S +  + +  +                    + D+Q + +      E  
Sbjct: 929  CNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEES 988

Query: 933  KDQEFRQIEAKQRELDKLAEKNNQVKLE---LDNRFQALQNQKQDTVQAQLEL------- 982
            K++   Q+   Q ++D ++++    ++E   ++   + L+    D  Q + E+       
Sbjct: 989  KNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSS 1048

Query: 983  -EREQHQLNLEQ------TAFNQAN----ESLLKQREQLTKKIQAF-----HYELKKRNQ 1026
             +  + Q++L +      T  N  N      L K RE+L  ++ A+       E K    
Sbjct: 1049 KDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETS 1108

Query: 1027 FLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDXXXXXXXXXXXXXXXXXSQSNV 1086
              ALK      KE ++  K+++I     Q EKE T+                    ++N+
Sbjct: 1109 EKALKE----VKENEEHLKEEKI-----QLEKEATE------------TKQQLNSLRANL 1147

Query: 1087 E-LERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLI 1145
            E LE++ E LA     L K +        Q N +I Q   E  + Q+  NE+  KK    
Sbjct: 1148 ESLEKEHEDLAAQ---LKKYEEQIANKERQYNEEISQLNDEITSTQQ-ENESIKKK---- 1199

Query: 1146 KRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQL 1205
                    N +L+ E  A++    +++   +K E+    LQ+++ K + +  +      +
Sbjct: 1200 --------NDELEGEVKAMKSTS-EEQSNLKKSEIDALNLQIKELKKKNETNEASLLESI 1250

Query: 1206 VAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLE 1265
             +++++  K+ + +   N K  E+  L     A+++K          KY   L+L++  E
Sbjct: 1251 KSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK--------NSKY---LELQKESE 1299

Query: 1266 RTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETE 1325
            + K++LD K   +  +L K  N  + ++K   +  R+    +   K  E  L  L NE +
Sbjct: 1300 KIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQ 1359

Query: 1326 RKRAVLEDQISYFEKQRKQATDAILASHKEVKKK----EGELQKLLVELETRKTKLNN-- 1379
             K          FEK+RK   +      +E  +K    E EL +L  E E +  +++N  
Sbjct: 1360 IKNQA-------FEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTR 1412

Query: 1380 -DFAKFSRQREEF-ENQRXXXXXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQK 1437
             +  K S   +E  E ++              +      + +  IE   KR +E L  Q 
Sbjct: 1413 SELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQL 1472

Query: 1438 KEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKE 1497
            +   ++K+++ E  +K+ +E  +++++++   +  ++  + +E+   +L     TI   +
Sbjct: 1473 RAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSD 1532

Query: 1498 KELKAFKDKVDQDIDSTXXXXXXXXXXXXXXXXXXXSLIERERA---------------- 1541
            ++L+  K   ++DI +                     L  + R                 
Sbjct: 1533 EKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELN 1592

Query: 1542 -------INSKDS-LLNKKIETIKRQLHDKEMRVLR-------LVDRMKLAEQKYQTEIN 1586
                   IN++++ +L  K+E I+R+L DK+  +         L  R+K  EQ+  +   
Sbjct: 1593 NAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQ 1652

Query: 1587 RLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYLYPWLYPQQ---KQDDNTLQ 1636
            + + ++ +  + +++ F     +++   M     Y  L  ++   K+D++T++
Sbjct: 1653 KAQ-KSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVK 1704



 Score =  128 bits (322), Expect = 1e-31
 Identities = 198/1134 (17%), Positives = 443/1134 (39%), Gaps = 145/1134 (12%)

Query: 446  NEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQ 505
            + +KQ  ++  ++K +++++  L  +  +     ++     +    + +  +        
Sbjct: 660  SRIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDP 719

Query: 506  DQKENELLFFEK--QLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNTKAQ 563
            D++    + FE+  +L++     + E+ + Q E       L    I L ++ K+L+ K Q
Sbjct: 720  DEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQ 779

Query: 564  QIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNXXXXXXX 623
             + +  S LK + S       +L+ E +N++    ++ Q R   E               
Sbjct: 780  ILNSSHSSLKENFS-------ILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKS 832

Query: 624  XXXXXXXTLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLA 683
                   ++  L K  E   L  +++ ++ +  + K    L +++Q   +   N  K   
Sbjct: 833  TIHKQEDSIKTLEKGLETI-LSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQK--- 888

Query: 684  EREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADF-- 741
            E++ +    +KE ++ ++ +   +   + I  +L ++    N    E ++  + + ++  
Sbjct: 889  EKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKS 948

Query: 742  ----HNDSLKKLNEYELSLQKRLQELQT--------LEANQKQHSYQNQAYFEGELDKLN 789
                H++ + KL E   SL    +++Q         +E ++ + S Q  +  + ++D ++
Sbjct: 949  RFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQ-LSNLQNKIDSMS 1007

Query: 790  REKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQ 849
            +EK+ F   R      ++ +K+ +SD  Q      ++ D    E       +++    L+
Sbjct: 1008 QEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDE-------YESQISLLK 1060

Query: 850  DQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYXXXXXXXXXXX 909
            ++L T          + S L + + E    +A +K   +   ++L+              
Sbjct: 1061 EKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLE-------------- 1106

Query: 910  XXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQ 969
                    A  +++++ +  + +K Q  ++    +++L+ L      ++ E ++    L+
Sbjct: 1107 ----TSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLK 1162

Query: 970  NQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHY---------- 1019
              ++     + +   E  QLN E T+  Q NES+ K+ ++L  +++A             
Sbjct: 1163 KYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKK 1222

Query: 1020 -----------ELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDXXXX 1068
                       ELKK+N+             + +  K +E+       EKE ++ +    
Sbjct: 1223 SEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLK 1282

Query: 1069 XXXXXXXXXXXXXSQSNV---ELERKREKLATDF---TNLNKVQHNTQINRDQLNSQIRQ 1122
                          +S     EL+ K  +L       TNL+K +  ++    +L     +
Sbjct: 1283 ASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSE 1342

Query: 1123 FLLERKN----FQRFSNEANAKKAFLIK--RLRSFASNLKLQKEALAIQKLE-----FDK 1171
               ERKN     ++  NE   K     K  +L +  S+   Q+ +  I  LE        
Sbjct: 1343 ---ERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQN 1399

Query: 1172 RDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKN 1231
             +E + KE+     +LE+          EKQ  + +++ +     D+    ++KL+ ++ 
Sbjct: 1400 ENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIER 1459

Query: 1232 LSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRF 1291
                   NK   E  ++QL+    +   ++E L++ +++  K+             +L  
Sbjct: 1460 ------DNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKA-----------ELEK 1502

Query: 1292 EKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILA 1351
             K+ + K +  ++     LK +   +     + E+ +   E+ I   + ++      I  
Sbjct: 1503 SKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINE 1562

Query: 1352 SHKEVKKKEGELQ---KLLVELETRKTKLNNDFAKFSRQREEFENQRXXXXXXXXXXXXX 1408
            S K++++ + +L+   K   ELET K +LNN   K     EE                  
Sbjct: 1563 SEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEE------------------ 1604

Query: 1409 XNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKM--------RDEIER 1460
               N      +++IE   K    E+   ++E +   SRL E  +++        + E ER
Sbjct: 1605 ---NTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEER 1661

Query: 1461 KESQVKLVLKETQ--RKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDID 1512
            +    K  ++++Q   KA LLE + N L  ++      E  +K   D   Q+I+
Sbjct: 1662 RAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIE 1715



 Score = 76.3 bits (186), Expect = 8e-16
 Identities = 94/447 (21%), Positives = 197/447 (44%), Gaps = 66/447 (14%)

Query: 29   KNRSKTDVDKIENQLLKEIKSLEDELKNLKG---LKNQAEDNP-------------ELDK 72
            K +S++++ +++    +E K+ E++L+ LK    +KNQA +               E  +
Sbjct: 1326 KEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSE 1385

Query: 73   KINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYA 132
            KIN LE +L RL NE        N +  K  E+DN     ++EL ++   N + L  K  
Sbjct: 1386 KINTLEDELIRLQNE--------NEL--KAKEIDNT----RSELEKVSLSNDELLEEKQN 1431

Query: 133  NLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNY 192
             + + Q    +++  +   I   ++ +  + +    +   +   +   Q     VE+   
Sbjct: 1432 TIKSLQ----DEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEG-- 1485

Query: 193  LLNVIDQLYNELDQLENQKRL---LSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQ 249
            L  + ++   E  +LE  K +   L    E+   EL S+   ++   E ++Q++   +  
Sbjct: 1486 LKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEED 1545

Query: 250  YQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGI 309
             +  + E S L  +I  +++++ + +S LR++            +EL+ V ++L+     
Sbjct: 1546 IKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSG--------SELETVKQELNNAQEK 1597

Query: 310  TKQNAQH---VEDKLVALNKE-KDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEH 365
             + NA+    ++ KL  + +E KD+   Q E   N  +  L+     + E EL +   + 
Sbjct: 1598 IRINAEENTVLKSKLEDIERELKDK---QAEIKSNQEEKELLTSRLKELEQELDSTQQKA 1654

Query: 366  QQNEFEQKQS------------DSLLKLETEYKALQHKINEFKNESATKSEELLNQEREL 413
            Q++E E++              +  + LET+Y  L +K   +K +  T  +   +Q +E+
Sbjct: 1655 QKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEI 1714

Query: 414  FEKRREIDTLLTQASLEYEHQRESSQL 440
             +  +E+D L  + S   E   + S++
Sbjct: 1715 EKLAKELDNLKAENSKLKEANEDRSEI 1741


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score =  117 bits (292), Expect = 4e-28
 Identities = 213/1080 (19%), Positives = 441/1080 (40%), Gaps = 163/1080 (15%)

Query: 34   TDVDKIENQLLKEIKSLEDELKNLKGLKNQAED-----------NPELDKKINHLEVDLN 82
            ++ D+I  + L+  ++LE+  + ++GL+    +           N EL K+I+ L  D++
Sbjct: 938  SEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDIS 997

Query: 83   RLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYH 142
            +          Q +  + K S+L       +NE+ RL+    D +NSK   + +F     
Sbjct: 998  K---------EQSSQSLIKESKLK-----LENEIKRLK----DVINSKEEEIKSFNDKLS 1039

Query: 143  NKLNDFH----RLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEK---KNYLLN 195
            +   D       L +N N  ++RL   +  N +L        +N N   EK    N L N
Sbjct: 1040 SSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRS------KNENFKKEKAALNNQLKN 1093

Query: 196  VIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRD 255
               +L    ++++N K+ L+  +     + VS   ++    +       ++K  YQ  ++
Sbjct: 1094 KESELLKMKEKIDNHKKELA-TFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKE 1152

Query: 256  ELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELD-DVAKQLSFQDGITKQNA 314
            E S  +R+   TK++   K ++L   ++D      +++ EL+  +++++S          
Sbjct: 1153 EYSNFQRE---TKEQEQKKRNSLVESLND------SKIKELEARLSQEISLN-------- 1195

Query: 315  QHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENEL-FAKHLEHQQNEFEQK 373
            Q++  ++   + E +  +T++   ++       DI K   + +L F +   + +NE E+K
Sbjct: 1196 QYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEK 1255

Query: 374  QSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEH 433
            ++       TE +       + K ++  K  + L Q+    +    +D++L         
Sbjct: 1256 KNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQD---MDPSIPLDSIL--------- 1303

Query: 434  QRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKE 493
              E      DK++++ +    ++Y K++LD E       +   S    + ++   +    
Sbjct: 1304 -NEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLS 1362

Query: 494  LEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEA----KQQELFEAKHALERSFI 549
              ++Y +K +  +++   L   E +LK         L      K ++   +K+  E  + 
Sbjct: 1363 SSDIYKLKFEASEERVKSL---EDKLKTMPLRDRTNLPVGDIIKNRDSI-SKYEEEIRYY 1418

Query: 550  KLEDKEKDLNTKAQQIANE----FSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERT 605
            KLE      N K Q+I NE     SQL  D  +S   E +L  + + LQ++ +       
Sbjct: 1419 KLE------NYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLEST----- 1467

Query: 606  YFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFE------QERLINQREHKELVASVEK 659
              ER   +LS+              T+ Q  + FE      Q   +  REH   +   E+
Sbjct: 1468 --ERQKELLSS--------------TIKQQKQQFENCMDDLQGNELRLREHIHALKQAEE 1511

Query: 660  QKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQ 719
              + +   ++     +    K + EREM     + +++ T  +L    +  +++  DLA 
Sbjct: 1512 DVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAH 1571

Query: 720  LNQSLN--QERSELQNAKQRIADFHNDSLKKLN--EYELSLQKRLQELQTLEANQKQHSY 775
            L + L+  ++RS+  +   R+ +  N SLK     + E +  K   E  T ++  K    
Sbjct: 1572 LKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDL 1631

Query: 776  QNQA-YFEGELDKLNREKQAFLNLRKKQ--------TMEVDAIKQRLSDKHQALNMQQAE 826
              Q  ++   ++ LN EK A ++L +K+          E +++K ++    +     +++
Sbjct: 1632 LKQLDHYTKVVEMLNNEKDA-ISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESD 1690

Query: 827  LDRKTH--ELNNAFLNHDADQ-KSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGF 883
            L++KT   +++NA L+    + K + +++  ++ET +L   + S   E  +    +  G+
Sbjct: 1691 LNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGY 1750

Query: 884  KRHWSNKTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAK 943
            K  + ++  +   +Y                       L  D Q+      +       K
Sbjct: 1751 KDKFDDEKQKNIDLYEENQ---------------TLQKLNTDLQLQLKNLHERLSDTTEK 1795

Query: 944  QRELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQHQL---NLEQTAFNQAN 1000
               L K+ E  N V LE D +++ ++  K         LER   +L   N +QT   +  
Sbjct: 1796 NAWLSKIHELENMVSLETDLKYEEMKKNK--------SLERAVEELQTKNSQQTDVIELA 1847

Query: 1001 ESLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEY 1060
                 + E+ T K +A   +L+K      L+ K+        + K QE+    + ++  Y
Sbjct: 1848 NKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRY 1907



 Score =  107 bits (266), Expect = 4e-25
 Identities = 220/1149 (19%), Positives = 461/1149 (40%), Gaps = 138/1149 (12%)

Query: 368  NEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQA 427
            NE   K  + L ++E++ K L+ K  +  NE    +++LLNQE+E   K   +   +  +
Sbjct: 867  NEQINKLKNDLQEMESKKKFLEEKNQKTVNE-LENTQDLLNQEKENLRKNESLLNRVKTS 925

Query: 428  SLEYEHQRESSQLLKDKQNEVKQHF-QNLEYAKKELD------KERNL-LDQQKKVDSEA 479
            S   + Q +     KD+ +  K    QNLE A +++       +ER   L++    ++E 
Sbjct: 926  SETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNEL 985

Query: 480  IFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFE 539
            I Q+ +      KE     L+K+ K  + ENE+    K+LK      E E+++   +L  
Sbjct: 986  IKQISDLNCDISKEQSSQSLIKESKL-KLENEI----KRLKDVINSKEEEIKSFNDKLSS 1040

Query: 540  AKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQK 599
            ++  L+   + LE       ++ Q +  E S L++        +  L N+ +N + E  K
Sbjct: 1041 SEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLK 1100

Query: 600  LFQERTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLINQREHKELVASVEK 659
            + ++    ++  A  S                L + T+    E   N ++ KE  ++ ++
Sbjct: 1101 MKEKIDNHKKELATFSKQRDDAVSEHGKITAELKE-TRIQLTEYKSNYQKIKEEYSNFQR 1159

Query: 660  QKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQ 719
            + +   +K ++    SLN SK    +E+  +  +   E +  Q LN   +   ++ +++ 
Sbjct: 1160 ETKEQEQKKRNSLVESLNDSKI---KELEARLSQ---EISLNQYLNKRISGNSVETNISS 1213

Query: 720  LNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQA 779
              +S +     L            D +KK  + +L+  +  + L+  E  +K++      
Sbjct: 1214 TRRSTSYSDDPLDK---------EDIIKKYYDLQLAFTEITRNLEN-EIEEKKNLISRLR 1263

Query: 780  YFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFL 839
            + E  L   + E Q      KK       +K+ + D   ++ +           LN    
Sbjct: 1264 FTETRLASSSFEDQKIKAQMKK-------LKKLIQDMDPSIPLDSI--------LNEPLD 1308

Query: 840  NHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYX 899
            N    +  +   +  V   ++ +D+E  A  + +   +   + F++     +     IY 
Sbjct: 1309 NCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYK 1368

Query: 900  XXXXXXXXXXXXXXX----------XXIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDK 949
                                       +   D+ K+      + ++E R  + +  +L +
Sbjct: 1369 LKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSIS-KYEEEIRYYKLENYKLQE 1427

Query: 950  LAEKNN----QVKLEL--DNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESL 1003
            +  ++N    Q+ L+L      +AL +++ D +Q  LE    Q +L          + ++
Sbjct: 1428 ILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKEL---------LSSTI 1478

Query: 1004 LKQREQLTKKIQAFH-YELKKRNQFLALKGKR--------LFAKEQDQQRKDQEINWRFK 1054
             +Q++Q    +      EL+ R    ALK           +  K + Q ++ +++ W   
Sbjct: 1479 KQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIW--- 1535

Query: 1055 QFEKEYTDFDXXXXXXXXXXXXXXXXXSQSNVELERKREKLATDFTNLNKVQHNTQINR- 1113
            + E E  D D                    + +L   +E+L+      ++ Q+  +INR 
Sbjct: 1536 EREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE---DRSQYTDEINRL 1592

Query: 1114 -DQLNSQIR-------QFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKL---QKEAL 1162
             ++LN  ++       +F   +   +  +N++ AK + L+K+L  +   +++   +K+A+
Sbjct: 1593 KEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAI 1652

Query: 1163 AIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKAL 1222
            ++ + E  ++ E    E +    ++      KQ  + +  ++  A++     LS   +  
Sbjct: 1653 SLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKN 1712

Query: 1223 NQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTN---LLDLKENLERTKDQLD-KKHRSI 1278
             +   ++K L +T           Q Q++Q   N   +  L+ +    KD+ D +K ++I
Sbjct: 1713 KEITEKIKYLEETL----------QLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNI 1762

Query: 1279 FARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYF 1338
                     DL +E+ Q L  Q++  D    LK    NLH   ++T  K A L  +I   
Sbjct: 1763 ---------DL-YEENQTL--QKLNTDLQLQLK----NLHERLSDTTEKNAWLS-KIHEL 1805

Query: 1339 EKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRXXX 1398
            E      TD     ++E+KK +  L++ + EL+T+ ++  +     ++ R EFE      
Sbjct: 1806 ENMVSLETDL---KYEEMKKNKS-LERAVEELQTKNSQQTDVIELANKNRSEFEEATLKY 1861

Query: 1399 XXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEI 1458
                       +    + K      +SY+  ++E+  Q+ EF K++   YE        I
Sbjct: 1862 EAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEM-AQEIEFWKSR---YESTMIGSKNI 1917

Query: 1459 ERKESQVKL 1467
            +   +Q K+
Sbjct: 1918 DSNNAQSKI 1926



 Score =  106 bits (265), Expect = 6e-25
 Identities = 252/1299 (19%), Positives = 520/1299 (40%), Gaps = 231/1299 (17%)

Query: 101  KVSELDNLTRFYK-NELTRLQQENADFLNSKYANLA--------NFQANYHNKLNDFHRL 151
            KV ++ N   F+K   L  L+++    LN+    L           +  YH +     R+
Sbjct: 767  KVYKIGNTKLFFKAGVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRV 826

Query: 152  IENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQK 211
            I N  +  NRL  K +   NL      LL + N     K +    I++L N+L ++E++K
Sbjct: 827  IGNTFRLYNRL-VKEDPWFNLFIRIKPLLTSSNDMTRTKKFN-EQINKLKNDLQEMESKK 884

Query: 212  RLLSIEYENTYRELVSADNELQNVYENIDQNQI---QFKHQYQTYR---DELSQLERKIQ 265
            + L  + + T  EL +  + L    EN+ +N+    + K   +T +   D+L   + +I 
Sbjct: 885  KFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEIS 944

Query: 266  LTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKLVALN 325
              K E+         KI      I  R A L+   K  S  + + KQ    + D    ++
Sbjct: 945  REKLEVAQNLEEAHQKIQGLQETIREREATLE---KLHSKNNELIKQ----ISDLNCDIS 997

Query: 326  KEKDRLNTQKEAFFNLRQSA--LID-INKLQQENELFAKHLEHQQNEFEQK--------- 373
            KE+   +  KE+   L      L D IN  ++E + F   L   + + + K         
Sbjct: 998  KEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCN 1057

Query: 374  -QSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYE 432
                 L  L TE   L+ K   FK E A  + +L N+E EL + + +ID           
Sbjct: 1058 IAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKID----------N 1107

Query: 433  HQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERK 492
            H++E +   K + + V +H +       EL + R  L + K        ++KE+ +  ++
Sbjct: 1108 HKKELATFSKQRDDAVSEHGK----ITAELKETRIQLTEYK----SNYQKIKEEYSNFQR 1159

Query: 493  ELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKLE 552
            E        K+++ +K N L+   + L   +     ELEA+  +       L +   ++ 
Sbjct: 1160 E-------TKEQEQKKRNSLV---ESLNDSKI---KELEARLSQEISLNQYLNK---RIS 1203

Query: 553  DKEKDLNTKAQQIANEFSQLKTDK----SKSADFELMLQNEYENLQ---QEKQKLFQERT 605
                + N  + + +  +S    DK     K  D +L       NL+   +EK+ L     
Sbjct: 1204 GNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLR 1263

Query: 606  YFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLINQ-REHKELVASVEKQ---K 661
            + E   A                       + SFE +++  Q ++ K+L+  ++      
Sbjct: 1264 FTETRLA-----------------------SSSFEDQKIKAQMKKLKKLIQDMDPSIPLD 1300

Query: 662  EILGKKLQDFSQTSLNASKNLAE-----REMAIKFK-----EKEIEATEKQLLNDVNNAE 711
             IL + L +      + +K + E     R++ I+ +     E  I A   +       + 
Sbjct: 1301 SILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESS 1360

Query: 712  VIQADLAQLNQSLNQERSELQNAKQR---IADFHNDSLKKLNEYELSLQKRLQELQTLE- 767
            +  +D+ +L    ++ER +    K +   + D  N  +  + +   S+ K  +E++  + 
Sbjct: 1361 LSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKL 1420

Query: 768  ANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAEL 827
             N K     N++   G+L +L  + +   +     + ++D +++ L    +   +  + +
Sbjct: 1421 ENYKLQEILNES--NGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTI 1478

Query: 828  DRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHW 887
             ++  +  N   +   ++  L++ +  +K+ ++ +    ++++EK +   +N    K  W
Sbjct: 1479 KQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVK-NMASIIEKLK--TQNKQKEKLIW 1535

Query: 888  SNKTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAKQREL 947
              +  +                          SD+Q    + EL++ Q+ ++I +   +L
Sbjct: 1536 EREMERND------------------------SDMQLQETLLELKRVQDVKKILSD--DL 1569

Query: 948  DKLAEKNNQV--KLELDNRFQALQNQKQDTVQAQLELEREQHQLNLE-QTAFNQAN---E 1001
              L E+ + V  + +  +    L+ +   +++A+  L++E   L  + +T+ N +     
Sbjct: 1570 AHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKIS 1629

Query: 1002 SLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYT 1061
             LLKQ +  TK ++     L      ++L  K L+ K +    + + +  +         
Sbjct: 1630 DLLKQLDHYTKVVEM----LNNEKDAISLAEKELYQKYEALNTECESLKGKI-------- 1677

Query: 1062 DFDXXXXXXXXXXXXXXXXXSQSNVELERKREKLATDF---TNLNKVQHNTQINRDQLNS 1118
                                    V L + +++L +D    T+  ++ +    +  Q N 
Sbjct: 1678 ------------------------VSLTKIKQELESDLNQKTDALQISNAALSSSTQKNK 1713

Query: 1119 QIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKK 1178
            +I + +   +   +   E N++   L+K L++  +  K             DK D++++K
Sbjct: 1714 EITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYK-------------DKFDDEKQK 1760

Query: 1179 ELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSD--EKKALNQKLVELKNL--SQ 1234
             +    L  E    +K N D++ Q     +K   E+LSD  EK A   K+ EL+N+   +
Sbjct: 1761 NID---LYEENQTLQKLNTDLQLQ-----LKNLHERLSDTTEKNAWLSKIHELENMVSLE 1812

Query: 1235 TYL----ANKNKA-EYSQQQLQQKYTNLLDLKENLERTKDQLDK---KHRSIFARLTKFA 1286
            T L      KNK+ E + ++LQ K +   D+ E   + + + ++   K+ +  + L K+ 
Sbjct: 1813 TDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYI 1872

Query: 1287 NDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETE 1325
            +    E K+ ++      DK   ++E  + + F  +  E
Sbjct: 1873 SQQELEMKKSIRDNSSYRDK---VQEMAQEIEFWKSRYE 1908



 Score = 83.2 bits (204), Expect = 7e-18
 Identities = 143/855 (16%), Positives = 331/855 (38%), Gaps = 107/855 (12%)

Query: 719  QLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQ------KQ 772
            + N+ +N+ +++LQ  + +       + K +NE E +     QE + L  N+      K 
Sbjct: 865  KFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKT 924

Query: 773  HSYQNQAYFE---GELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDR 829
             S   Q  F+    E D+++REK       ++   ++  +++ + ++   L     +L  
Sbjct: 925  SSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLE----KLHS 980

Query: 830  KTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSN 889
            K +EL     + + D    Q   + +KE++  ++ E   L +      E +  F    S+
Sbjct: 981  KNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSS 1040

Query: 890  KTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDK 949
                L                         SDL+   + F+ +K     Q++ K+ EL K
Sbjct: 1041 SEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLK 1100

Query: 950  LAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQ 1009
            + EK +  K EL         Q+ D V    ++  E  +  ++ T +    + + ++   
Sbjct: 1101 MKEKIDNHKKEL----ATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSN 1156

Query: 1010 LTKKIQAFHYELKKRNQFL-ALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDXXXX 1068
              ++ +    E KKRN  + +L   ++   ++ + R  QEI+        +Y +      
Sbjct: 1157 FQRETK--EQEQKKRNSLVESLNDSKI---KELEARLSQEISLN------QYLNKRISGN 1205

Query: 1069 XXXXXXXXXXXXXSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERK 1128
                         S S+  L+++         ++ K  ++ Q+   ++   +   + E+K
Sbjct: 1206 SVETNISSTRRSTSYSDDPLDKE---------DIIKKYYDLQLAFTEITRNLENEIEEKK 1256

Query: 1129 NF---QRFSNEANAKKAFLIKRLRSFASNLKL----QKEALAIQKLEFDKRDEQQKKELQ 1181
            N     RF+    A  +F  +++++    LK        ++ +  +  +  D    KE  
Sbjct: 1257 NLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESD 1316

Query: 1182 QATLQLEQFKFEKQNFDIEK------QRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQT 1235
               L LE   + K+  DIE       +  + A+ ++  K+  E    +  + +LK     
Sbjct: 1317 INKLMLE-VDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLK----- 1370

Query: 1236 YLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQ 1295
            + A++ + +  + +L+      + L++        + K   SI    +K+  ++R+ K +
Sbjct: 1371 FEASEERVKSLEDKLKT-----MPLRDRTNLPVGDIIKNRDSI----SKYEEEIRYYKLE 1421

Query: 1296 LLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKE 1355
              K Q I+++ N  L +   +L     +++ K A+L +Q+   +K  +            
Sbjct: 1422 NYKLQEILNESNGKLSQLTLDLR----QSKSKEALLSEQLDRLQKDLESTERQKELLSST 1477

Query: 1356 VKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFEN----------QRXXXXXXXXXX 1405
            +K+++ + +  + +L+  + +L        +  E+ +N          Q           
Sbjct: 1478 IKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWER 1537

Query: 1406 XXXXNSNNFKT-------KAIQEIENSYKRGM-----------------EELNFQKKEFD 1441
                N ++ +        K +Q+++      +                 +E+N  K+E +
Sbjct: 1538 EMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELN 1597

Query: 1442 ---KNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEK 1498
               K ++ L + F  ++ ++E   +  +  + +  ++ +        LN EK+ I   EK
Sbjct: 1598 CSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEK 1657

Query: 1499 ELKAFKDKVDQDIDS 1513
            EL    + ++ + +S
Sbjct: 1658 ELYQKYEALNTECES 1672



 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 115/591 (19%), Positives = 230/591 (38%), Gaps = 110/591 (18%)

Query: 1171 KRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELK 1230
            K   +Q  E    +LQL+   ++  N  +  +  ++A     EK  D K  LN  +++L 
Sbjct: 748  KASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLA---DLEKQKDVK--LNNIMIKLT 802

Query: 1231 NLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHR--SIFARLTKF--- 1285
               + Y   K +  Y  Q+L  K T ++    N  R  ++L K+    ++F R+      
Sbjct: 803  ATIRGYTVRK-EITYHLQKL--KKTRVIG---NTFRLYNRLVKEDPWFNLFIRIKPLLTS 856

Query: 1286 ANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYF--EKQRK 1343
            +ND+   KK   +  ++ +D    L+E E    FL  + ++    LE+       EK+  
Sbjct: 857  SNDMTRTKKFNEQINKLKND----LQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENL 912

Query: 1344 QATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRXXXXXXXX 1403
            +  +++L     VK     LQK   +L + K +++ +  + ++  EE             
Sbjct: 913  RKNESLL---NRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQ---------- 959

Query: 1404 XXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIERKES 1463
                       K + +QE     +  +E+L+ +  E  K  S L         +I +++S
Sbjct: 960  -----------KIQGLQETIREREATLEKLHSKNNELIKQISDL-------NCDISKEQS 1001

Query: 1464 QVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDIDSTXXXXXXXXX 1523
               L+ KE++ K   LE +  +L   K+ I+ KE+E+K+F DK+    +           
Sbjct: 1002 SQSLI-KESKLK---LENEIKRL---KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEK 1054

Query: 1524 XXXXXXXXXXSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQT 1583
                      SL+     + SK+    K+   +  QL +KE  +L++ +++         
Sbjct: 1055 NCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKI--------- 1105

Query: 1584 EINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYLYPWLYPQQKQDDNTLQIRXXXXX 1643
                      D+ K+++  F                         KQ D+ +        
Sbjct: 1106 ----------DNHKKELATF------------------------SKQRDDAV----SEHG 1127

Query: 1644 XXXXXXXXXXXXXXXXXXXXXXXXKKLDQIQLESQLNNKQSEFSKVESMMEKLLEKTESR 1703
                                    ++    Q E++   ++   S VES+ +  +++ E+R
Sbjct: 1128 KITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEAR 1187

Query: 1704 LNDFDQKINYLTKKVNQHNT-YQPSSYQPTPSYQDS--DKQQLLFRIQELE 1751
            L+       YL K+++ ++     SS + + SY D   DK+ ++ +  +L+
Sbjct: 1188 LSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQ 1238



 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 57/259 (22%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 20   DGYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKG-LKNQAEDNPELDKKINHLE 78
            D Y +     N  K  +   E +L ++ ++L  E ++LKG + +  +   EL+  +N  +
Sbjct: 1636 DHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ-K 1694

Query: 79   VDLNRLVNEYKNFQFQKN-HMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANF 137
             D  ++ N   +   QKN  + +K+  L+   +    + +R    N + + +  A+   +
Sbjct: 1695 TDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSR----NGELVKTLQASCNGY 1750

Query: 138  QANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVI 197
            +  + ++      L E +NQT+ +LN  +      +   ++     N  + K + L N++
Sbjct: 1751 KDKFDDEKQKNIDLYE-ENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMV 1809

Query: 198  DQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDEL 257
              L  +L + E  K+  S+  E    EL + +++  +V E  ++N+ +F+     Y  ++
Sbjct: 1810 -SLETDL-KYEEMKKNKSL--ERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQI 1865

Query: 258  SQLERKIQLTKQELVDKES 276
            S LE+ I  ++QEL  K+S
Sbjct: 1866 SDLEKYI--SQQELEMKKS 1882


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil
           protein, putative structural protein involved in
           cytosceleton [Mycoplasma pneumoniae]
          Length = 1033

 Score =  108 bits (270), Expect = 1e-25
 Identities = 175/730 (23%), Positives = 329/730 (45%), Gaps = 84/730 (11%)

Query: 186 TVEKKNYLLNVIDQ--LYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQ 243
           TV+K N L N + Q  +    +   +Q  +L        +E+ +   +LQ +   I+  Q
Sbjct: 270 TVDKAN-LTNALSQTVVIKPAEDSAHQSAVLD-------KEIATKQAQLQQLQAQIELRQ 321

Query: 244 IQFKHQYQTYR--DELSQLERKIQLTKQELVDKE-SALRVKIDDADFYINARLAELDD-V 299
            Q +    TY   +E   L  +  +  Q  V  E + L+ ++D A  +  A   +L++ +
Sbjct: 322 AQLETPPVTYMGVEEYKLLPVQDVVPVQPTVSFEMTLLQEQLDKALKHNAALQIQLEEQL 381

Query: 300 AKQLSF-QDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENEL 358
           AK L + Q  + ++  + ++++   L +E   LN  ++  F  + ++L+ + +L++EN  
Sbjct: 382 AKPLQYDQSPVLQERIELLQNQNTNLTQE---LNELQQKLFKSQNNSLL-LARLEEENRT 437

Query: 359 FAKHLEHQQNEFEQKQ---SDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFE 415
             +HL++   E  Q        L +L+ +  +L  +I ++K +S    E+L      +  
Sbjct: 438 LKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLAL----IPS 493

Query: 416 KRREIDTLLTQA-SLEYEHQRESSQLLKDKQNEVKQHFQNLEYAK--KELDKERNLLDQQ 472
            R EI++L T+  SL+  +QR S  L++ + N +K   + L   K   E  K RNLL Q 
Sbjct: 494 LRSEINSLETEVISLKQTNQRLS--LIERENNFLKTEIKQLRETKLNDENTKYRNLLKQY 551

Query: 473 KKVDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQA-DFENELE 531
           + + +++  +LKE   +  + L   +  ++  Q Q+ NE L   K+L Q +A +FE  L 
Sbjct: 552 ELMRADSDAKLKE--LEHEQHLAHQHHQEQLAQLQRHNEALV--KELDQVKATNFELGLA 607

Query: 532 AK----QQELFEAKHA-LERSFIKLEDKEKDLNTKAQQIANEFSQLK-TDKSKSADFELM 585
           A+    Q+ + E K++ L  S    E+  + L     ++ N+ + L+ T K K+A     
Sbjct: 608 AQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSKT 667

Query: 586 LQNEYENLQQEKQKLFQERTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLI 645
           L    + L+Q +  L    +  +   A                   L+ L +S E    +
Sbjct: 668 LTLTKQQLEQTQFDL----SLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQL 723

Query: 646 NQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEK--QL 703
            Q +H+ L  S  K ++      Q F Q       + A +++A+ FK+   E T+K   +
Sbjct: 724 -QTQHELLQESYNKLQDEANHTQQQFHQAQNEL--DAAHQQLAL-FKQNNEELTDKCSNI 779

Query: 704 LNDVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYEL------SLQ 757
            N++++   ++ +   LN   N  + +    K+++   H++  +   E+EL       ++
Sbjct: 780 QNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVK 839

Query: 758 KRLQELQTLEANQKQHSYQN--QAY--FEGELDKLNREKQAF--LNLRKKQTMEVDAIKQ 811
             L E+Q    N+    YQ+   AY   +   +KL +E Q    +NL K+Q      + Q
Sbjct: 840 AELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQ------LAQ 893

Query: 812 RLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLE 871
           +L + HQ+L+   AEL +     NN           LQ   AT   + +L++      LE
Sbjct: 894 KLHNTHQSLSQTHAELTQLQAAYNN-----------LQ---ATPPVSDELLEQFNQVQLE 939

Query: 872 KQREFAENVA 881
           KQR   +N+A
Sbjct: 940 KQRLLQQNLA 949



 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 157/802 (19%), Positives = 314/802 (39%), Gaps = 127/802 (15%)

Query: 649  EHKELVASVEK-------QKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEK 701
            EH   + +V+K        + ++ K  +D +  S    K +A ++  ++  + +IE  + 
Sbjct: 263  EHSFSITTVDKANLTNALSQTVVIKPAEDSAHQSAVLDKEIATKQAQLQQLQAQIELRQA 322

Query: 702  QLLND------VNNAEVIQA-DLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYEL 754
            QL         V   +++   D+  +  +++ E + LQ    +    HN +L+   E +L
Sbjct: 323  QLETPPVTYMGVEEYKLLPVQDVVPVQPTVSFEMTLLQEQLDKALK-HNAALQIQLEEQL 381

Query: 755  S----------LQKRLQELQTLEAN---------QKQHSYQNQAYFEGELDKLNREKQAF 795
            +          LQ+R++ LQ    N         QK    QN +     L++ NR  +  
Sbjct: 382  AKPLQYDQSPVLQERIELLQNQNTNLTQELNELQQKLFKSQNNSLLLARLEEENRTLKQH 441

Query: 796  LNLRKKQTMEVDAI-----KQRLSDKHQ-ALNMQQAELDRKTHELNNAFL-NHDADQKSL 848
            L     +  +++ +     +Q   DKH   L ++Q + D K H+   A + +  ++  SL
Sbjct: 442  LQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSL 501

Query: 849  QDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYXXXXXXXXXX 908
            + ++ ++K+T      +R +L+E++  F +           +  QL++            
Sbjct: 502  ETEVISLKQTN-----QRLSLIERENNFLKT----------EIKQLRE------------ 534

Query: 909  XXXXXXXXIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKL-ELDNRFQA 967
                      + +L K Y++     D + +++E +Q     LA +++Q +L +L    +A
Sbjct: 535  -TKLNDENTKYRNLLKQYELMRADSDAKLKELEHEQH----LAHQHHQEQLAQLQRHNEA 589

Query: 968  LQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAF---HYELKKR 1024
            L  +         EL         ++    Q N SLL   +   + +QA    + EL+ +
Sbjct: 590  LVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQ 649

Query: 1025 NQFLALKGKRLFA---------KEQDQQRK-----DQEINWRFKQFEKEYTDFDXXXXXX 1070
               L    K   A         K+Q +Q +      QE    FKQ  +  TD        
Sbjct: 650  LNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTD----KLMA 705

Query: 1071 XXXXXXXXXXXSQSNVELERKREKLATDFTNLNKVQHNTQIN----RDQLNSQIRQFLLE 1126
                        ++  +L+ + E L   +  L    ++TQ      +++L++  +Q  L 
Sbjct: 706  SETQLNHLQQSDENLTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALF 765

Query: 1127 RKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQ 1186
            ++N     NE    K   I+      + +K   E L  +      +  QQK+++Q     
Sbjct: 766  KQN-----NEELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSN 820

Query: 1187 LEQFKFEKQNFDIEKQRQLVAIKTQCEKLS----DEKKALNQKLVELKNLSQTYLANKNK 1242
            L Q + E +      Q     +K +  ++     +E  A  Q L+    L Q   +N NK
Sbjct: 821  LAQIQAEHELL----QESYNKVKAELNEIQITNLNEANAQYQDLLSAYELLQ---SNHNK 873

Query: 1243 AEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLR----FEKKQLLK 1298
             +   Q L Q       L + L  T   L + H  +  +L    N+L+       + L +
Sbjct: 874  LKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAEL-TQLQAAYNNLQATPPVSDELLEQ 932

Query: 1299 AQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEV-- 1356
              ++  +K RLL++N   +H L    E    +   Q    + ++ +    ++   KE+  
Sbjct: 933  FNQVQLEKQRLLQQNLALVHELQYFNE----LNSSQTHEIKTKQDETVKEVIIVEKEIPV 988

Query: 1357 -KKKEGELQKLLVELETRKTKL 1377
              +K+  L+K  + +E ++  L
Sbjct: 989  PPEKKPRLKKRDIVIENKEDAL 1010



 Score = 73.2 bits (178), Expect = 7e-15
 Identities = 118/551 (21%), Positives = 228/551 (41%), Gaps = 83/551 (15%)

Query: 23  LQSEYEKNRSKTDVDKIE--NQLLKEIKSLEDELKNLKGLKNQAE----DNPELDKKINH 76
           LQ E  K  SK   +++     L  EI SLE E+ +LK    +      +N  L  +I  
Sbjct: 472 LQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQ 531

Query: 77  L-EVDLNRLVNEYKN----FQFQKNHMVDKVSELDN----LTRFYKNELTRLQQENADFL 127
           L E  LN    +Y+N    ++  +     K+ EL++      + ++ +L +LQ+ N   +
Sbjct: 532 LRETKLNDENTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALV 591

Query: 128 NS-KYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNIT 186
                    NF+      L    +  E Q   + + N  +  +    + NV  L   N  
Sbjct: 592 KELDQVKATNFE------LGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSE 645

Query: 187 VEKKNYLLNVIDQLYNELDQLENQKRLLS--------IEYENTYRELVSADNELQNVYEN 238
           ++ +   LNV++  + E    +++   L+         +   T  +L +   + Q++ + 
Sbjct: 646 LQNQ---LNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDK 702

Query: 239 IDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDD 298
           +  ++ Q  H  Q+  + L+QL+ + +L    L +  + L+ + +      +    ELD 
Sbjct: 703 LMASETQLNHLQQS-DENLTQLQTQHEL----LQESYNKLQDEANHTQQQFHQAQNELDA 757

Query: 299 VAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENEL 358
             +QL+    + KQN + + DK   +  E   LN  K  + NL            + N L
Sbjct: 758 AHQQLA----LFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNT----------EHNLL 803

Query: 359 FAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRR 418
             K+   QQ E  Q +  +L +++ E++ LQ   N+ K E        LN+ +       
Sbjct: 804 QDKYA--QQKEQMQHEHSNLAQIQAEHELLQESYNKVKAE--------LNEIQI------ 847

Query: 419 EIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSE 478
              T L +A+ +Y+    + +LL+   N++KQ  Q L     +++ E+  L Q+     +
Sbjct: 848 ---TNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLN----QVNLEKQQLAQKLHNTHQ 900

Query: 479 AIFQLKEKVAQERKELEELY--------LVKKQKQDQKENELLFFEKQLKQHQADFENEL 530
           ++ Q   ++ Q +     L         L+++  Q Q E + L  +     H+  + NEL
Sbjct: 901 SLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNEL 960

Query: 531 EAKQQELFEAK 541
            + Q    + K
Sbjct: 961 NSSQTHEIKTK 971



 Score = 71.2 bits (173), Expect = 3e-14
 Identities = 126/592 (21%), Positives = 237/592 (40%), Gaps = 109/592 (18%)

Query: 28  EKNRSKTDVDKIENQLLKEIKSLEDELKNLKGLKNQAEDN----PELDKKINHLEVDLNR 83
           E N+    ++K   QL ++  SL  +++  K    + ++     P L  +IN LE ++  
Sbjct: 448 EANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVIS 507

Query: 84  LVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLAN----FQA 139
           L         Q N  +  +   +N   F K E+ +L++   +  N+KY NL       +A
Sbjct: 508 LK--------QTNQRLSLIERENN---FLKTEIKQLRETKLNDENTKYRNLLKQYELMRA 556

Query: 140 NYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQ 199
           +   KL +    +E++    ++ +Q+      L  +N AL++  +  V+  N+ L +  Q
Sbjct: 557 DSDAKLKE----LEHEQHLAHQHHQE--QLAQLQRHNEALVKELD-QVKATNFELGLAAQ 609

Query: 200 LYNE----LDQLENQKRLLSIE-YENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYR 254
            + +    L+Q +N   L S++  E   + L   ++ELQN       N ++F H+ +T  
Sbjct: 610 GFEQQKVVLEQ-KNSSLLASLQAAEENVQALGITNSELQN-----QLNVLEFTHKEKTAF 663

Query: 255 DELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNA 314
           D      + + LTKQ+L   +  L +  +                      Q    KQ  
Sbjct: 664 D-----SKTLTLTKQQLEQTQFDLSLTQE----------------------QLATFKQQN 696

Query: 315 QHVEDKLVALNKEKDRLNTQKEAFFNLR-QSALI--DINKLQQENELFAKHLEHQQNEFE 371
           Q + DKL+A   + + L    E    L+ Q  L+    NKLQ E         H Q +F 
Sbjct: 697 QSLTDKLMASETQLNHLQQSDENLTQLQTQHELLQESYNKLQDE-------ANHTQQQFH 749

Query: 372 QKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEY 431
           Q Q+        E  A   ++  FK  +   +++  N + EL +        L +    +
Sbjct: 750 QAQN--------ELDAAHQQLALFKQNNEELTDKCSNIQNELHD--------LNRVKTNW 793

Query: 432 EHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQER 491
           E+      LL+DK  + K+  Q+      ++  E  L              L+E   + +
Sbjct: 794 ENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHEL--------------LQESYNKVK 839

Query: 492 KELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKL 551
            EL E+ +    + + +  +LL   + L+ +    + EL+   Q   E K  L +     
Sbjct: 840 AELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLE-KQQLAQKLHNT 898

Query: 552 EDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQE 603
                  + +  Q+   ++ L+     S +    L  ++  +Q EKQ+L Q+
Sbjct: 899 HQSLSQTHAELTQLQAAYNNLQATPPVSDE----LLEQFNQVQLEKQRLLQQ 946



 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 98/477 (20%), Positives = 193/477 (40%), Gaps = 112/477 (23%)

Query: 1105 VQHNTQINRDQLNSQIRQFL--LERKNFQRFSNEANAKKAFLIKRLRSFASNLK--LQKE 1160
            +Q   ++ ++Q N+ + Q L  L++K F+  +N      + L+ RL      LK  LQ  
Sbjct: 393  LQERIELLQNQ-NTNLTQELNELQQKLFKSQNN------SLLLARLEEENRTLKQHLQNN 445

Query: 1161 ALAIQKLEF--DKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDE 1218
                 +L F  +K+ EQ +++    TLQ+EQ+KF+ +    + Q QL  I +    L  E
Sbjct: 446  LPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSK----KHQEQLALIPS----LRSE 497

Query: 1219 KKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQ-----------KYTNLL--------- 1258
              +L  +++ LK  +Q     + +  + + +++Q           KY NLL         
Sbjct: 498  INSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRAD 557

Query: 1259 -DLK-ENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQL--------LKAQR------I 1302
             D K + LE  +    + H+   A+L +    L  E  Q+        L AQ       +
Sbjct: 558  SDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKATNFELGLAAQGFEQQKVV 617

Query: 1303 VDDKNRLL-------KENERNLHFLSNETERKRAVLE----------------------- 1332
            ++ KN  L       +EN + L   ++E + +  VLE                       
Sbjct: 618  LEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQ 677

Query: 1333 ---------DQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAK 1383
                     +Q++ F++Q +  TD ++AS  ++   + +  + L +L+T+   L   + K
Sbjct: 678  TQFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQ-QSDENLTQLQTQHELLQESYNK 736

Query: 1384 F----SRQREEFENQRXXXXXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKE 1439
                 +  +++F   +               +N   T     I+N     + +LN  K  
Sbjct: 737  LQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNE----LHDLNRVKTN 792

Query: 1440 FDK---NKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTI 1493
            ++      + L + + + +++++ + S     L + Q +  LL+   NK+  E N I
Sbjct: 793  WENLNTEHNLLQDKYAQQKEQMQHEHSN----LAQIQAEHELLQESYNKVKAELNEI 845



 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 108/462 (23%), Positives = 191/462 (41%), Gaps = 64/462 (13%)

Query: 50   LEDELKNLKGLKNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLT 109
            LE +  +L      AE+N      +  L +  + L N+    +F   H      +   LT
Sbjct: 618  LEQKNSSLLASLQAAEEN------VQALGITNSELQNQLNVLEF--THKEKTAFDSKTLT 669

Query: 110  RFYKNELTRLQQENADF-LNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKING 168
                  LT+ Q E   F L+     LA F+   +  L D  +L+ ++ Q +N L Q    
Sbjct: 670  ------LTKQQLEQTQFDLSLTQEQLATFKQQ-NQSLTD--KLMASETQ-LNHLQQSDEN 719

Query: 169  NQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSA 228
               L   +  L ++ N   ++ N+      Q  NELD    Q  L    ++    EL   
Sbjct: 720  LTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLAL----FKQNNEELTDK 775

Query: 229  DNELQNVYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFY 288
             + +QN  E  D N++  K  ++    E + L+ K    K+++  + S            
Sbjct: 776  CSNIQN--ELHDLNRV--KTNWENLNTEHNLLQDKYAQQKEQMQHEHS------------ 819

Query: 289  INARLAELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALID 348
                LA++   A+    Q+   K  A+  E ++  LN+     N Q +   +  +    +
Sbjct: 820  ---NLAQIQ--AEHELLQESYNKVKAELNEIQITNLNE----ANAQYQDLLSAYELLQSN 870

Query: 349  INKLQQENELFAK-HLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATK--SEE 405
             NKL+QE ++  + +LE QQ    QK  ++   L   +  L      + N  AT   S+E
Sbjct: 871  HNKLKQELQVLNQVNLEKQQ--LAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDE 928

Query: 406  LLNQEREL-FEKRREI-DTLLTQASLEYEHQRESSQL--LKDKQNEVKQHFQNLEY---- 457
            LL Q  ++  EK+R +   L     L+Y ++  SSQ   +K KQ+E  +    +E     
Sbjct: 929  LLEQFNQVQLEKQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETVKEVIIVEKEIPV 988

Query: 458  --AKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEEL 497
               KK   K+R+++ + K+ D+      KE++    + L ++
Sbjct: 989  PPEKKPRLKKRDIVIENKE-DALGKLSKKERIQAYAERLAKI 1029



 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 83/444 (18%), Positives = 168/444 (37%), Gaps = 59/444 (13%)

Query: 1185 LQLEQFKFEKQNFDIEK--QRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNK 1242
            +QLE+   +   +D     Q ++  ++ Q   L+ E   L QKL + +N S      + +
Sbjct: 375  IQLEEQLAKPLQYDQSPVLQERIELLQNQNTNLTQELNELQQKLFKSQNNSLLLARLEEE 434

Query: 1243 AEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRI 1302
                +Q LQ        L   LE+  +QL +   S+  ++ ++  D +  ++QL     +
Sbjct: 435  NRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSL 494

Query: 1303 VDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGE 1362
              + N L  E          +T ++ +++E + ++ + + KQ                  
Sbjct: 495  RSEINSLETE-----VISLKQTNQRLSLIERENNFLKTEIKQ------------------ 531

Query: 1363 LQKLLVELETRKTKLNNDFAKFSRQREEFENQRXXXXXXXXXXXXXXNSNNFKTKAIQEI 1422
                      R+TKLN++  K+    +++E  R              +  +   +  QE 
Sbjct: 532  ---------LRETKLNDENTKYRNLLKQYELMR---ADSDAKLKELEHEQHLAHQHHQEQ 579

Query: 1423 ENSYKRGMEELNFQKKEFDKNKSRLYEY------FRKMRDEIERKESQVKLVLKETQRKA 1476
                +R  E L    KE D+ K+  +E       F + +  +E+K S +   L+  +   
Sbjct: 580  LAQLQRHNEAL---VKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENV 636

Query: 1477 NLLEAQANKLNIEKNTIDFKEKELKAFKDK----VDQDIDSTXXXXXXXXXXXXXXXXXX 1532
              L    ++L  + N ++F  KE  AF  K      Q ++ T                  
Sbjct: 637  QALGITNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQN 696

Query: 1533 XSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQT 1592
             SL ++  A  ++ + L +  E + +     E+        ++ +  K Q E N  + Q 
Sbjct: 697  QSLTDKLMASETQLNHLQQSDENLTQLQTQHEL--------LQESYNKLQDEANHTQQQF 748

Query: 1593 FDSEKQ-DIKNFFPPLFKINGNDM 1615
              ++ + D  +    LFK N  ++
Sbjct: 749  HQAQNELDAAHQQLALFKQNNEEL 772



 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 68/357 (19%), Positives = 151/357 (42%), Gaps = 54/357 (15%)

Query: 25  SEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKGLKNQAEDNPELDKKINHLEVDLNRL 84
           ++ +  +++ D+   + QL    +  +     L   + Q     + D+ +  L+     L
Sbjct: 671 TKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQLQTQHELL 730

Query: 85  VNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNK 144
              Y   Q + NH   +  +  N       +L   +Q N +        L +  +N  N+
Sbjct: 731 QESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEE--------LTDKCSNIQNE 782

Query: 145 LNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNEL 204
           L+D +R+  N         + +N   NL+ +  A         ++K  +       ++ L
Sbjct: 783 LHDLNRVKTNW--------ENLNTEHNLLQDKYA---------QQKEQM----QHEHSNL 821

Query: 205 DQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFK---HQYQTYRDELSQLE 261
            Q++ +  LL   Y     EL    NE+Q    N+++   Q++     Y+  +   ++L+
Sbjct: 822 AQIQAEHELLQESYNKVKAEL----NEIQ--ITNLNEANAQYQDLLSAYELLQSNHNKLK 875

Query: 262 RKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKL 321
           +++Q+  Q  ++K+  L  K+ +    ++   AEL  +  Q ++ +    Q    V D+L
Sbjct: 876 QELQVLNQVNLEKQQ-LAQKLHNTHQSLSQTHAELTQL--QAAYNN---LQATPPVSDEL 929

Query: 322 VALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSL 378
           +   ++ +++  +K+    L Q  L  +++LQ  NEL +     Q +E + KQ +++
Sbjct: 930 L---EQFNQVQLEKQ---RLLQQNLALVHELQYFNELNSS----QTHEIKTKQDETV 976


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score =  103 bits (257), Expect = 5e-24
 Identities = 154/679 (22%), Positives = 294/679 (43%), Gaps = 130/679 (19%)

Query: 5   DKKPSLQP--IYDIGFDDGYLQSEYEKNRSKT-DVDKIENQLLKEIKSLED--ELKNLKG 59
           D K  ++P     + F++ + Q   E N +K  +V       +KE +  +D   ++NL  
Sbjct: 140 DDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIENLTK 199

Query: 60  LKN---------QAEDNPELDKKINHLEVDLNRL--VNEYKNFQFQKNHMVDKVSELDNL 108
             N         Q +D P + K+I   +    ++  +++Y N +    +  D   ++D+L
Sbjct: 200 AINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLEN-ADLKKQIDDL 258

Query: 109 TRFYKNELTRLQQENADFLN------SKYANLANFQANYHNKLNDFHRLIENQNQTINRL 162
                +++  L+QE  D         SK+ +    Q +   +  D +  ++N+   IN L
Sbjct: 259 KENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPL 318

Query: 163 NQKINGN-------QNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNEL-DQL----ENQ 210
           + ++N         + L+ + +  L+N +  V+++  LL V++   NEL +QL    E  
Sbjct: 319 SDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTAREAN 378

Query: 211 KRLLSIEYENTYRELVSADNELQNVYENIDQNQIQ----FKHQYQTYRDELSQLERKIQL 266
           +RL  +E EN + +     NEL+ +++N   ++ +      +QY+   DE      K+Q+
Sbjct: 379 QRLDLVEQENDFLK-----NELKKLHDNTSNDENEKYDDLLNQYELLFDENETKFDKLQV 433

Query: 267 TKQEL-VDKESALRVKIDDADFYIN----ARLAELDDVAKQLSFQD----------GITK 311
            +Q L +D +  +     + D  ++     R  + D    + SF++          G+T 
Sbjct: 434 KQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTI 493

Query: 312 QNAQHVEDKLVAL---NKEKDRLNTQK-----------EAFFNLRQSALIDINKLQQENE 357
           QN Q ++DK+  L   N+EK  LNT +           +  FN+ Q  L  + ++     
Sbjct: 494 QN-QQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLALN 552

Query: 358 LFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKR 417
                LE + +  E   ++ L KL+ +++ LQ    + K +     +  LN   E ++  
Sbjct: 553 EKINDLEDELSGSENS-NNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQ-- 609

Query: 418 REIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDS 477
            ++ +   + + E E  ++S      + N++KQ   +LE AKKEL        Q   V S
Sbjct: 610 -DLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKEL--------QFTPVTS 660

Query: 478 EAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQEL 537
           +             + L+EL  +K +K      E LF E Q  Q+Q  + N++ A Q E 
Sbjct: 661 D-------------EHLDELETLKIEK------EQLFLENQALQNQLQYFNDISANQTE- 700

Query: 538 FEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEK 597
            E K A         D++K +            ++K  + K  DF  ++QN+ + L +  
Sbjct: 701 -EIKEA--------SDEDKPV------------EIKKPRIKKRDF--VIQNKDDKLAKLS 737

Query: 598 QKLFQERTYFERNAAVLSN 616
           +K  + + Y ER A + +N
Sbjct: 738 KK-ERIQAYAERLAKINAN 755



 Score = 86.7 bits (213), Expect = 6e-19
 Identities = 146/697 (20%), Positives = 292/697 (41%), Gaps = 98/697 (14%)

Query: 194 LNVIDQLY--NELDQLENQKRLLSIEYENTYRELVSADNELQNVY-ENIDQNQIQFKHQY 250
           L V+D+ +  N L+   NQ +    E +   + +   + + Q+V  + I     + K   
Sbjct: 76  LKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVLTKEIKTGFQELKPSV 135

Query: 251 QTYRDELSQL--ERKIQLTKQELVDK--ESALRVKIDDADFYINARLAELDDVAKQLSFQ 306
            T  D+  ++  E   Q++ +EL ++  E     K  +   +   ++ E +      S +
Sbjct: 136 ITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIE 195

Query: 307 DGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKH--LE 364
           +     N  H   K +  ++  D+    K        +  +D        EL  ++  L+
Sbjct: 196 NLTKAINPVH---KTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLK 252

Query: 365 HQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESA-TKS--EELLNQERELFEKRRE-- 419
            Q ++ ++  +D +  LE E   L+ +++E K++   TK   ++LL + R+L+E+ +   
Sbjct: 253 KQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKP 312

Query: 420 --IDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDS 477
             I+ L  + + E E+ ++   LL D+ + +K    N++     L    N +++      
Sbjct: 313 VAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINE------ 366

Query: 478 EAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQEL 537
                L+ ++   R+  + L LV+ Q+ D  +NEL    K+L  + ++ ENE   K  +L
Sbjct: 367 -----LQNQLLTAREANQRLDLVE-QENDFLKNEL----KKLHDNTSNDENE---KYDDL 413

Query: 538 FEAKHAL----ERSFIKLEDKEKDLNTKAQQIANEFS--------QLKTDKSKSADFELM 585
                 L    E  F KL+ K++ LN   Q+  +           +++  +SK  DF   
Sbjct: 414 LNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDF--- 470

Query: 586 LQNEYENLQQEKQKLFQERT--------YFERNAAVLSNXXXXXXXXXXXXXXTLDQLTK 637
             N  +N  +E++K   E+           +   A L                 L Q  K
Sbjct: 471 --NNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLK 528

Query: 638 SFEQERLINQREHKELVASVEKQKEILGKKLQDFSQT---SLNASKNLAEREMAIKFKEK 694
             + + L N  + K  +A++E+    L +K+ D       S N++  LA+ +   +  ++
Sbjct: 529 --DSQNLFNVAQDK--LATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQE 584

Query: 695 -------EIEATEKQLLNDVNNA--------EVIQADLAQLNQSLNQERSELQNAKQRIA 739
                  + E  +K  LND N          E   ++L +  QSL+   SE    KQ+I 
Sbjct: 585 SYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQIN 644

Query: 740 DFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLR 799
              N + K+L    ++  + L EL+TL+  ++Q   +NQA        L  + Q F ++ 
Sbjct: 645 SLEN-AKKELQFTPVTSDEHLDELETLKIEKEQLFLENQA--------LQNQLQYFNDIS 695

Query: 800 KKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNN 836
             QT E+    +  SD+ + + +++  + ++   + N
Sbjct: 696 ANQTEEI----KEASDEDKPVEIKKPRIKKRDFVIQN 728



 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 170/809 (21%), Positives = 320/809 (39%), Gaps = 132/809 (16%)

Query: 637  KSFEQERLINQREHKELVAS-VEKQKEILGKKLQDFSQTSLNA---SKNLAEREMAIKFK 692
            K  E     N+ + K L+   V++   IL      FS + + A    +NL E+       
Sbjct: 5    KELEISDFDNELDEKTLLKELVQRTNNIL------FSPSKITAIPFERNLLEKTFFGTVD 58

Query: 693  EKEIEATEKQLLNDVNNAEVIQA--DLAQLNQSLNQERS---ELQNAKQRIADFHNDSLK 747
            E E E +     N + + +V+    D   LN   NQ ++   E Q   Q +A    D   
Sbjct: 59   EAEKEKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQS 118

Query: 748  KLNEYELSLQKRLQELQ--TLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTME 805
             L +    ++   QEL+   + A   +   + +A  +   ++L  +    +N  KK  ++
Sbjct: 119  VLTK---EIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQ 175

Query: 806  V---DAIKQ--RLSDKHQALNMQQAELDRKTHELNNAFLNHDAD---QKSLQDQLATVKE 857
            +   D +K+  +  D +   N+ +A      H+      N D     ++ L++Q  T K+
Sbjct: 176  IFSTDKVKEPEQFDDFYSIENLTKAI--NPVHKTIQYDQNDDQPFVVKRILKEQHPT-KK 232

Query: 858  TQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQL-QKIYXXXXXXXXXXXXXXXXXX 916
              +L D     LL +  +  + +   K + +++   L Q+I                   
Sbjct: 233  VDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKK 292

Query: 917  IAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQDTV 976
            +    LQ++  ++E  +++    I     E+++  E   Q K  L ++  AL+N K   V
Sbjct: 293  LQDDLLQENRDLYEQLQNKPVA-INPLSDEVNEELENLKQEKALLSDQLDALKN-KSSNV 350

Query: 977  QAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLF 1036
            Q QL L      L +     N+    LL  RE   +++     E    N FL  + K+L 
Sbjct: 351  QQQLAL------LPVLNNQINELQNQLLTAREA-NQRLDLVEQE----NDFLKNELKKLH 399

Query: 1037 --AKEQDQQRKDQEINWRFKQFEKEYTDFDXXXXXXXXXXXXXXXXXSQSNVELERKREK 1094
                  + ++ D  +N     F++  T FD                      +L+ K++ 
Sbjct: 400  DNTSNDENEKYDDLLNQYELLFDENETKFD----------------------KLQVKQQA 437

Query: 1095 LATDFTN-LNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFAS 1153
            L  D+   ++ ++H      D L  +I     +  +F    N    +K  L ++L    +
Sbjct: 438  LNLDYQKTISALKHEN----DVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKL----N 489

Query: 1154 NLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCE 1213
             L +Q + L  +  E ++ +E++        + L+Q   + QN     Q +L        
Sbjct: 490  GLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDKLAT------ 543

Query: 1214 KLSDEKKALNQKLVELKN-LSQTYLANK--NKAEYSQQQLQQKY----TNLLDLKEN--- 1263
             L +   ALN+K+ +L++ LS +  +N    K +   + LQ+ Y    T+   LK+N   
Sbjct: 544  -LEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLN 602

Query: 1264 ------------LERTKDQLDKKHRSIFA------RLTKFANDLRFEKKQL----LKAQR 1301
                         E T  +L+K  +S+ A      +L +  N L   KK+L    + +  
Sbjct: 603  DANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDE 662

Query: 1302 IVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILAS---HKEVKK 1358
             +D+   L  E E+   FL N+       L++Q+ YF       T+ I  +    K V+ 
Sbjct: 663  HLDELETLKIEKEQ--LFLENQ------ALQNQLQYFNDISANQTEEIKEASDEDKPVEI 714

Query: 1359 KEGELQKLLVELETRKTKLNNDFAKFSRQ 1387
            K+  ++K    ++ +  KL    AK S++
Sbjct: 715  KKPRIKKRDFVIQNKDDKL----AKLSKK 739



 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 88/480 (18%), Positives = 197/480 (41%), Gaps = 51/480 (10%)

Query: 1156 KLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAI-KTQCEK 1214
            +LQ + +AI  L  +  +E +  + ++A L  +    + ++ ++++Q  L+ +   Q  +
Sbjct: 307  QLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINE 366

Query: 1215 LSDE---KKALNQKLVELKNLSQTYLANKNKA--EYSQQQLQQKYTNLLDLKENL----E 1265
            L ++    +  NQ+L +L      +L N+ K   + +     +KY +LL+  E L    E
Sbjct: 367  LQNQLLTAREANQRL-DLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENE 425

Query: 1266 RTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETE 1325
               D+L  K +++     K  + L+ E   LL       D+    +  + + +   N  E
Sbjct: 426  TKFDKLQVKQQALNLDYQKTISALKHENDVLL-------DEIEWTRSKDNDFNNTKNSFE 478

Query: 1326 RKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFS 1385
             ++  L+++++    Q +Q  D I    +  ++K       LV L+ +     N F    
Sbjct: 479  EQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQ 538

Query: 1386 RQREEFENQRXXXXXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDK-NK 1444
             +    E                 + +      + +++  ++   E     K +F+K  K
Sbjct: 539  DKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKK 598

Query: 1445 SRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFK 1504
            ++L +   + +D +   E +    L++ ++  +  +++ N+L  + N+++  +KEL+   
Sbjct: 599  NKLNDANEQYQDLLSAFE-ETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTP 657

Query: 1505 DKVDQDIDSTXXXXXXXXXXXXXXXXXXXSLIERERAINSKDSLLNK----------KIE 1554
               D+ +D                       IE+E+      +L N+          + E
Sbjct: 658  VTSDEHLDELETLK-----------------IEKEQLFLENQALQNQLQYFNDISANQTE 700

Query: 1555 TIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGND 1614
             IK +  D++  V     R+K  +   Q + ++L      S+K+ I+ +   L KIN N+
Sbjct: 701  EIK-EASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKL---SKKERIQAYAERLAKINANE 756


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 130/612 (21%), Positives = 258/612 (42%), Gaps = 96/612 (15%)

Query: 332 NTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHK 391
           NTQ+    NL+Q    ++ K QQ+N      L+   +  + K ++ + K ++  + LQ +
Sbjct: 186 NTQRICS-NLKQ----ELQKQQQDNAKLKVRLQSYASNSD-KINEKVGKYKSCLETLQER 239

Query: 392 I---NEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEV 448
           I      KN   TK ++L  Q  +L+++R  I    T      +   +  +  K+   E+
Sbjct: 240 IATLTSHKNNQETKLKDL-RQNHQLYQRR--ISGFKTSIENLNKTINDLGKNKKEADAEL 296

Query: 449 KQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELY-------LVK 501
            +  + +EY K+ELD     L ++K  +S  I ++ +   +  K +E  +       L++
Sbjct: 297 MKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQ 356

Query: 502 KQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKL------EDKE 555
             K +++ ++L  FEK+L++H    ++ L    +       +   + +K       E+ E
Sbjct: 357 FNKFEERVHDL--FEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLE 414

Query: 556 KDLNTKAQQIANEFSQLKTDK------------SKSADFELMLQNEYENLQQEKQKLFQE 603
           + +++   ++A   ++L   +            + S + +  L +E  N +QE   L  +
Sbjct: 415 QKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQE---LLDD 471

Query: 604 RTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLINQREHKELVASV---EKQ 660
            +   +N A L N                +++ K  E ER     +  ++++S+   E Q
Sbjct: 472 ASQTAKNYASLENLVKAYKAEIVQSNEYEERI-KHLESERSTLSSQKNQIISSLGTKEAQ 530

Query: 661 KEILGKKLQ----DFSQTSLNASKNLAEREMAIKFKEKEIE-----------ATEKQLLN 705
            E L KKL+    + SQ S    ++L E+   +  + K+++            T+    N
Sbjct: 531 YEDLVKKLEAKNIEISQIS-GKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYEN 589

Query: 706 DVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQT 765
            +++   I   L   N +L Q   +L   K+     H   L+   +    LQK   E+  
Sbjct: 590 KISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQ 649

Query: 766 LEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQA 825
           L+A+            E EL++ NR  +    L KK+T     +++ LSD  + L  Q  
Sbjct: 650 LKAH------------ELELEEQNRHLKNC--LEKKET----GVEESLSDV-KTLKQQVI 690

Query: 826 ELDRKTHELNNAFLNHDADQKSLQDQLATVKET----QKLIDLERSALLEKQREFAENVA 881
            L  +  ++        A++  LQD L +++E     Q+ +  ++  L +K +E  E   
Sbjct: 691 VLKSEKQDIT-------AEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELEE--- 740

Query: 882 GFKRHWSNKTSQ 893
             K H  N+ S+
Sbjct: 741 -IKNHKRNEPSK 751



 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 132/610 (21%), Positives = 253/610 (41%), Gaps = 92/610 (15%)

Query: 30  NRSKTDVDKIENQLLKEIKSLEDELKNLKG-LKNQAEDNPELDKKINHLEVDLNRLVNEY 88
           N S T  + +   LL+   + +    NLK  L+ Q +DN +L  ++     + +++  + 
Sbjct: 170 NNSSTSSNDV---LLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKV 226

Query: 89  KNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLNDF 148
             ++     + ++++    LT    N+ T+L+            +L      Y  +++ F
Sbjct: 227 GKYKSCLETLQERIA---TLTSHKNNQETKLK------------DLRQNHQLYQRRISGF 271

Query: 149 HRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLE 208
              IEN N+TIN L       +N  + +  L++               I+ L  ELD   
Sbjct: 272 KTSIENLNKTINDL------GKNKKEADAELMKKG-----------KEIEYLKRELDDCS 314

Query: 209 NQKRLLSIEYENTYRELVSADNELQNVYEN-IDQNQIQFKHQYQTYRDELSQL-ERKIQ- 265
            Q     I+  +  +E+     E+    EN   +++     Q+  + + +  L E+K+Q 
Sbjct: 315 GQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQK 374

Query: 266 ---------------LTKQELVDKESALRVKIDDADFYINARL-AELDDVAKQLSFQDGI 309
                           T +   + E+ L+ + +D    +  ++ +  D++AK ++     
Sbjct: 375 HFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVT 434

Query: 310 TKQNAQHVEDKLVALNKE------KDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHL 363
            K     V+++L+  +         +  NT++E   +  Q+A    N    EN + A   
Sbjct: 435 QKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAK---NYASLENLVKAYKA 491

Query: 364 E-HQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDT 422
           E  Q NE+E++    +  LE+E   L  + N+  +   TK  +  +  ++L  K  EI  
Sbjct: 492 EIVQSNEYEER----IKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQ 547

Query: 423 LLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQ 482
           +  +     E     S  LK  Q+++++   NL    K      N +  Q ++    + +
Sbjct: 548 ISGKEQSLTEKNENLSNELKKVQDQLEK-LNNLNITTK--SNYENKISSQNEIVKALVSE 604

Query: 483 ---LKEKVAQ--ERKELEELYLVKKQKQDQKENELL----FFEKQLKQHQADFENELEAK 533
              LK+++ Q  E KE E+     K +  QK NE L        QLK H    E ELE +
Sbjct: 605 NDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAH----ELELEEQ 660

Query: 534 QQELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENL 593
            + L   K+ LE+    +E+   D+ T  QQ+      LK++K      +L LQ+  E+L
Sbjct: 661 NRHL---KNCLEKKETGVEESLSDVKTLKQQVI----VLKSEKQDITAEKLELQDNLESL 713

Query: 594 QQEKQKLFQE 603
           ++  + L Q+
Sbjct: 714 EEVTKNLQQK 723



 Score = 69.7 bits (169), Expect = 8e-14
 Identities = 97/493 (19%), Positives = 207/493 (41%), Gaps = 40/493 (8%)

Query: 29  KNRSKTDVDKIENQLLKEIKSLEDELKNLKGLKNQAEDNPELDKKINHLEVDLNRLVNEY 88
           KN+ + D + ++    KEI+ L+ EL +  G    +E+  +    I  +  +   ++   
Sbjct: 287 KNKKEADAELMKKG--KEIEYLKRELDDCSG--QLSEEKIKNSSLIQEMGKNREEMIKSI 342

Query: 89  KNF--QFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLA-NFQANYHNKL 145
           +NF  + + +H++      + +   ++ +L +      D LN    N      +N    L
Sbjct: 343 ENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETML 402

Query: 146 NDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELD 205
              +  I+        L QK++ +++ +   +       ++V +K  ++ V ++L   L 
Sbjct: 403 KQQYEDIKEN------LEQKMSSSKDEMAKTIN-----ELSVTQKGLIMGVQEEL---LT 448

Query: 206 QLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKH---QYQTYRDELSQLER 262
              N +  L  E  NT +EL+   ++    Y +++     +K    Q   Y + +  LE 
Sbjct: 449 SSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLES 508

Query: 263 K---IQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNAQHVED 319
           +   +   K +++        + +D    + A+  E+  ++ +   +  +T++N +++ +
Sbjct: 509 ERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGK---EQSLTEKN-ENLSN 564

Query: 320 KLVALNKEKDRLN----TQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQS 375
           +L  +  + ++LN    T K  + N   S    +  L  EN+   + ++      E +Q 
Sbjct: 565 ELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQK 624

Query: 376 DSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQR 435
           D   KLE    A Q K NE   +   +  +L   E EL E+ R +   L +     E   
Sbjct: 625 DHTTKLE----AFQ-KNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESL 679

Query: 436 ESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELE 495
              + LK +   +K   Q++   K EL      L++  K   + +   K ++ Q+ KELE
Sbjct: 680 SDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELE 739

Query: 496 ELYLVKKQKQDQK 508
           E+   K+ +  +K
Sbjct: 740 EIKNHKRNEPSKK 752



 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 121/655 (18%), Positives = 263/655 (40%), Gaps = 106/655 (16%)

Query: 149 HRLIENQNQTINR-LNQKINGNQNLIDNNVALLQ-----NPNITVEKKNYLLNVIDQLYN 202
           H  I N + + N  L +     Q +  N    LQ     N  + V  ++Y  N  D++  
Sbjct: 166 HTSINNSSTSSNDVLLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNS-DKINE 224

Query: 203 ELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQLER 262
           ++ + ++    L    +     L S  N  +   +++ QN   ++ +   ++  +  L +
Sbjct: 225 KVGKYKSCLETL----QERIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNK 280

Query: 263 KIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKLV 322
            I    +   + ++ L  K  + ++       ELDD + QLS +     +N+  +++   
Sbjct: 281 TINDLGKNKKEADAELMKKGKEIEYLKR----ELDDCSGQLSEEK---IKNSSLIQE--- 330

Query: 323 ALNKEKDRLNTQKEAFFNLRQSA-LIDINKLQQE-NELFAKHLEHQ------------QN 368
            + K ++ +    E FF+  ++  L+  NK ++  ++LF K L+              +N
Sbjct: 331 -MGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRN 389

Query: 369 EFEQKQSDSLLKLETEYKA----LQHKINEFKNESATKSEELLNQERELFEKRREIDTLL 424
              +  S++   L+ +Y+     L+ K++  K+E A    EL   ++ L    +E   LL
Sbjct: 390 TTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQE--ELL 447

Query: 425 T-----QASLEYEHQRESSQLLKDKQNEVKQH--FQNLEYA-KKELDKERNLLDQQKKVD 476
           T     Q +L  E      +LL D     K +   +NL  A K E+ +     ++ K ++
Sbjct: 448 TSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLE 507

Query: 477 SEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQE 536
           SE                       +     ++N+++      +    D   +LEAK  E
Sbjct: 508 SE-----------------------RSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIE 544

Query: 537 LFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQE 596
           + +           +  KE+ L  K + ++NE  +++    K  +  +  ++ YEN    
Sbjct: 545 ISQ-----------ISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISS 593

Query: 597 KQKLFQERTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQERLINQREHKELVAS 656
           + ++ +        A V  N              TL Q  +   + +   Q++H   + +
Sbjct: 594 QNEIVK--------ALVSEN-------------DTLKQRIQQLVEIKENEQKDHTTKLEA 632

Query: 657 VEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQAD 716
            +K  E L K   +  Q   +    L E+   +K   ++ E   ++ L+DV   +     
Sbjct: 633 FQKNNEQLQKLNVEVVQLKAH-ELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIV 691

Query: 717 LAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQK 771
           L    Q +  E+ ELQ+  + + +   +  +K+   +  L+++++EL+ ++ +++
Sbjct: 692 LKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELEEIKNHKR 746



 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 85/388 (21%), Positives = 164/388 (42%), Gaps = 57/388 (14%)

Query: 60  LKNQAEDNPE-LDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSEL----DNLTRFYKN 114
           LK Q ED  E L++K++  + ++ + +NE      QK  ++    EL     N+     +
Sbjct: 402 LKQQYEDIKENLEQKMSSSKDEMAKTINELS--VTQKGLIMGVQEELLTSSGNIQTALVS 459

Query: 115 ELTRLQQENADFLNS---KYANLANFQANYHNKL---NDFHRLIEN-----------QNQ 157
           E+   +QE  D  +     YA+L N    Y  ++   N++   I++           +NQ
Sbjct: 460 EMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQ 519

Query: 158 TINRLNQKINGNQNLIDN----NVALLQ---NPNITVEKKNYLLNVIDQLYNELDQLENQ 210
            I+ L  K    ++L+      N+ + Q         EK   L N + ++ ++L++L N 
Sbjct: 520 IISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNN- 578

Query: 211 KRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQE 270
              L+I  ++ Y   +S+ NE+  V   + +N    +   Q    E+ + E+K   TK E
Sbjct: 579 ---LNITTKSNYENKISSQNEI--VKALVSENDTLKQRIQQLV--EIKENEQKDHTTKLE 631

Query: 271 LVDKESALRVKIDDADFYINARLAELDDVAKQLSF-----QDGITKQ--NAQHVEDKLVA 323
              K +    K++     + A   EL++  + L       + G+ +   + + ++ +++ 
Sbjct: 632 AFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIV 691

Query: 324 LNKEK-----------DRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQ 372
           L  EK           D L + +E   NL+Q       +L+Q+ +   +   H++NE  +
Sbjct: 692 LKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELEEIKNHKRNEPSK 751

Query: 373 KQSDSLLKLETEYKALQHKINEFKNESA 400
           K + +  K     K      N F N SA
Sbjct: 752 KGTQNFTKPSDSPKKNATTSNLFPNNSA 779



 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 137/722 (18%), Positives = 281/722 (38%), Gaps = 96/722 (13%)

Query: 348  DINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLET--EYKALQHK--INEFKNESATKS 403
            +I ++++ +E  AK  E +++  +   S++ LK     EY     K  ++   N S+T S
Sbjct: 119  EITEVREVSEGVAK--ETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLHTSINNSSTSS 176

Query: 404  EELLNQERELFEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELD 463
             ++L    E F   + I + L Q   E + Q++ +  LK +   ++ +  N +   +++ 
Sbjct: 177  NDVL---LEAFTNTQRICSNLKQ---ELQKQQQDNAKLKVR---LQSYASNSDKINEKVG 227

Query: 464  KERNLLDQQKKVDSEAIFQLKEKVAQ--ERKELEELYLVKKQKQDQKENELLFFEKQLKQ 521
            K ++ L+            L+E++A     K  +E  L     +D ++N  L+ ++++  
Sbjct: 228  KYKSCLET-----------LQERIATLTSHKNNQETKL-----KDLRQNHQLY-QRRISG 270

Query: 522  HQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSAD 581
             +   EN L     +L + K   +   +K   K K++    +++ +   QL  +K K++ 
Sbjct: 271  FKTSIEN-LNKTINDLGKNKKEADAELMK---KGKEIEYLKRELDDCSGQLSEEKIKNSS 326

Query: 582  FELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNXXXXXXXXXXXXXXTLDQLTKSFEQ 641
                +    E + +  +  F E                               L +  + 
Sbjct: 327  LIQEMGKNREEMIKSIENFFSE--------------------------DKAHHLLQFNKF 360

Query: 642  ERLINQREHKELVASVEKQKEILGKKLQDFS-QTSLNASKNLAEREMAIKFK-EKEIEAT 699
            E  ++    K+L    +  K+ L   L++ + + S N    L ++   IK   E+++ ++
Sbjct: 361  EERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSS 420

Query: 700  EKQLLNDVNNAEVIQADLAQ------LNQSLNQER---SELQNAKQRIADFHNDSLKKLN 750
            + ++   +N   V Q  L        L  S N +    SE+ N +Q + D  + + K   
Sbjct: 421  KDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYA 480

Query: 751  EYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLNREK-QAFLNLRKKQTMEVDAI 809
              E      L +    E  Q     +   + E E   L+ +K Q   +L  K+    D +
Sbjct: 481  SLE-----NLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLV 535

Query: 810  KQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSAL 869
            K     K +A N++ +++  K   L     N   + K +QDQL  +              
Sbjct: 536  K-----KLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENK 590

Query: 870  LEKQREFAENVAGFKRHWSNKTSQLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDY--- 926
            +  Q E  + +         +  QL +I                        L  +    
Sbjct: 591  ISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQL 650

Query: 927  QVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQ 986
            +  EL+ +++ R ++    + +   E++      L  +   L+++KQD    +LEL+   
Sbjct: 651  KAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNL 710

Query: 987  HQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELK--KRNQFLALKGKRLFAKEQDQQR 1044
              L        Q  +S  ++ EQ  K+++    E+K  KRN+  + KG + F K  D  +
Sbjct: 711  ESLEEVTKNLQQKVQSQKRELEQKIKELE----EIKNHKRNE-PSKKGTQNFTKPSDSPK 765

Query: 1045 KD 1046
            K+
Sbjct: 766  KN 767



 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 125/686 (18%), Positives = 261/686 (38%), Gaps = 116/686 (16%)

Query: 948  DKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQR 1007
            D L E     +    N  Q LQ Q+QD  + ++ L+                  S     
Sbjct: 178  DVLLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQ------------------SYASNS 219

Query: 1008 EQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDXXX 1067
            +++ +K+  +   L+   + +A     L + + +Q+ K +++    + +++  + F    
Sbjct: 220  DKINEKVGKYKSCLETLQERIAT----LTSHKNNQETKLKDLRQNHQLYQRRISGFKTSI 275

Query: 1068 XXXXXXXXXXXXXXSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLER 1127
                           +++ EL +K +++              +  + +L+    Q   E+
Sbjct: 276  ENLNKTINDLGKNKKEADAELMKKGKEI--------------EYLKRELDDCSGQLSEEK 321

Query: 1128 KNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQL 1187
                    E    +  +IK + +F S  K      A   L+F+K +E+   +L +  LQ 
Sbjct: 322  IKNSSLIQEMGKNREEMIKSIENFFSEDK------AHHLLQFNKFEERVH-DLFEKKLQ- 373

Query: 1188 EQFKFEKQNFDIEKQRQLVAIK-TQCEKLSDEKKALNQKLVELK-NLSQTYLANKNKAEY 1245
                   ++FD+ K    V ++ T  E  S+ +  L Q+  ++K NL Q   ++K++   
Sbjct: 374  -------KHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAK 426

Query: 1246 SQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDD 1305
            +  +L      L+         +++L     +I   L    N+ R         Q ++DD
Sbjct: 427  TINELSVTQKGLI------MGVQEELLTSSGNIQTALVSEMNNTR---------QELLDD 471

Query: 1306 KNRLLKENERNLHFL----------SNETERKRAVLEDQISYFEKQRKQATDAILASHKE 1355
             ++  K N  +L  L          SNE E +   LE + S    Q+ Q   ++     +
Sbjct: 472  ASQTAK-NYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQ 530

Query: 1356 VKKKEGELQKLLVE----------LETRKTKLNNDFAKFSRQREEFENQRXXXXXXXXXX 1405
             +    +L+   +E          L  +   L+N+  K   Q E+  N            
Sbjct: 531  YEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENK 590

Query: 1406 XXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIERKESQV 1465
                +S N   KA+    ++ K+ +++L   K+   K+ +   E F+K  ++++      
Sbjct: 591  I---SSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQ------ 641

Query: 1466 KLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDIDSTXXXXXXXXXXX 1525
            KL ++  Q KA+ LE +    ++ KN ++ KE  +    ++   D+ +            
Sbjct: 642  KLNVEVVQLKAHELELEEQNRHL-KNCLEKKETGV----EESLSDVKTLKQQVIVLKSEK 696

Query: 1526 XXXXXXXXSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQTEI 1585
                     L +   ++      L +K+++ KR+L  K       +  ++  +   + E 
Sbjct: 697  QDITAEKLELQDNLESLEEVTKNLQQKVQSQKRELEQK-------IKELEEIKNHKRNEP 749

Query: 1586 NRLRTQTF----DSEKQD--IKNFFP 1605
            ++  TQ F    DS K++    N FP
Sbjct: 750  SKKGTQNFTKPSDSPKKNATTSNLFP 775


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 68.9 bits (167), Expect = 1e-13
 Identities = 185/991 (18%), Positives = 372/991 (37%), Gaps = 102/991 (10%)

Query: 559  NTKAQQIANEFS---QLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFER-NAAVL 614
            N    +I+ E++   +LK  K  +      +  E   + +  ++L + R Y E  N  + 
Sbjct: 103  NGNGAKISKEWTVTRRLKVTKGGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQ 162

Query: 615  SNXXXXXXXXXXXXXXTLDQLTKSFEQER-LINQREHKELVASVEKQKEILGKKLQDFSQ 673
             +               +D+L    E +R ++  +E    V   E++ +I+  +L+    
Sbjct: 163  GDVTRIITMNSKERREIIDELAGVAEFDRKIVKTKETLTEVQDREERCQIIATELER--- 219

Query: 674  TSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQN 733
                  +  A+R+ A K++    +  EKQ    V   + ++    +L   L ++R + Q 
Sbjct: 220  ---TLERLAADRQKAEKYQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQ 276

Query: 734  AKQRI------ADFHNDSLKKLNEYELSL--QKRLQELQTLEANQKQHSYQNQAYFEGEL 785
             +Q +             L+KLN    +L  +++L     L   + Q     Q Y +G+ 
Sbjct: 277  IQQALDQRSQAIQTQQTELEKLNAQVKALGEEEQLAVAAQLATQKAQRDQLQQRYNDGDR 336

Query: 786  DKLNREK-----QAFLNLRKKQTMEVDAIK-----QRLSDKHQALNMQQAELDRKTHELN 835
               N ++     QA ++  ++Q + +   K     Q L     A+   Q +L++  H+  
Sbjct: 337  QITNHQQQVGQIQAEISQSQQQFLHIQQEKSFHNTQTLPQLEAAVQTSQQQLEQLRHQAQ 396

Query: 836  NAFLNHDADQKSLQDQLATVKETQKLIDLERSALL---EKQREFAENVAGFKRHWSNKTS 892
                  +A  +       TV + Q  +  +RS L    E+Q++   N+A      +  + 
Sbjct: 397  AIASASEAWVQEQTQLSRTVNQLQDELIPQRSQLAQLEERQQQLLTNLAELTPLLTKVSV 456

Query: 893  QLQKIYXXXXXXXXXXXXXXXXXXIAFSDLQKDYQVFELQKDQEFRQI---EAKQRELDK 949
            +L++                       SDL +  Q   L ++ + R +   + KQR+LDK
Sbjct: 457  ELEEKQFAQGQFNFQGEALTSQIQTLASDLAQLEQERSLLQETQTRLLKEQQEKQRQLDK 516

Query: 950  LAEKNNQVKLELDNRFQALQNQKQDT-----VQAQLELEREQHQLNLEQTAFNQANESLL 1004
            L E  +Q + E+   +      + D      + AQL     Q+QL LE  A  +    ++
Sbjct: 517  L-EAASQAQQEVQGTYATKVILQSDLPGVCGLVAQLGQVEPQYQLALEIAAGGRLGFLVV 575

Query: 1005 KQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRK------DQEINWRFKQFEK 1058
            +        I+        R  FL L   R   K Q+          D  +N      ++
Sbjct: 576  EDDGVAAAGIEILKQAKAGRATFLPLNKIRP-PKGQNPNLSYAHGYIDLAVN--LIDGDR 632

Query: 1059 EYTDFDXXXXXXXXXXXXXXXXXSQSN----VELERKREKLATDFTNLNKVQHN-----T 1109
             Y D                   +       V LE    + +   +  ++ Q +     T
Sbjct: 633  RYADIFAFIFGNTIVFDTLVNARNHLGKHRIVTLEGDLLEASGAMSGGSRNQRSGLRFGT 692

Query: 1110 QINRDQLN-SQIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLE 1168
             ++ D     Q+RQ L + +  Q  + E   ++    ++L      ++ Q+    +    
Sbjct: 693  MVSEDTAEVKQLRQRLQDIQQVQGRNEELLLERTVRSRQLTQQLMEMRQQQREAQLH--- 749

Query: 1169 FDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVE 1228
              ++ E+    L Q   Q+ Q +  +Q    E Q+ L  ++     L  +  +  Q+L  
Sbjct: 750  -GEQTERDIARLSQQQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQQLASAQQQLTA 808

Query: 1229 LKNLSQTYLANKN--------KAEYSQ--QQLQQKYTNLLDLKENLERTKDQLDKKHRSI 1278
            L+  SQT+   +         +AEY +  Q L+Q   +L DL+ + +R ++++ +    I
Sbjct: 809  LET-SQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKI 867

Query: 1279 FARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYF 1338
                   A DL   ++Q              LK     ++     TE + A L +++   
Sbjct: 868  AQHQ---AQDLTLAQEQ------------EQLKIALAEMNGAIQTTEAQLAKLSEKLG-- 910

Query: 1339 EKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRXXX 1398
                KQ  D +     +++ ++ E Q    +L+T + +   +  +   Q E  E      
Sbjct: 911  --STKQERDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQENLTQLQTQLEALEQDLPDP 968

Query: 1399 XXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQK-------KEFDKNKSRLYEYF 1451
                        +N      ++E+E S + G + L   +       +E++K ++RL E  
Sbjct: 969  WPEIPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELS 1028

Query: 1452 RKMRDEI-ERKESQVKLVLKETQRKANLLEA 1481
             K++    ER E  +++    T R+ +  +A
Sbjct: 1029 EKLQTIAGERTELLLRIENFTTLRRRSFQDA 1059



 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 79/377 (20%), Positives = 155/377 (41%), Gaps = 47/377 (12%)

Query: 384  EYKALQHKINEFKNESATKSEELLNQ---ERELFEKRREIDTLLTQASLEYEHQRESSQL 440
            E K L+ ++ + +       E LL +    R+L ++  E+     +A L  E        
Sbjct: 700  EVKQLRQRLQDIQQVQGRNEELLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIAR 759

Query: 441  LKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLV 500
            L  +Q ++ Q   N +    EL +   LL Q       ++  L++++A  +++L  L   
Sbjct: 760  LSQQQTQINQQQINQQQKLAELQQNLALLQQ-------SLPPLEQQLASAQQQLTALETS 812

Query: 501  KKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNT 560
            +  +Q Q        + Q++  +A+++ +L+A +Q                ED  KDL  
Sbjct: 813  QTHQQWQT------IQIQIRTVEAEYQRQLQALRQG---------------EDHLKDLQN 851

Query: 561  KAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNXXXX 620
             +Q++  + +Q +   ++    +L L  E E L+    ++       E   A LS     
Sbjct: 852  SSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGS 911

Query: 621  XXXXXXXXXXTLDQLTKSFEQERL------INQREHKELVASVEKQKEILGKKL------ 668
                       L+QL    ++++        NQ+E++E +  ++ Q E L + L      
Sbjct: 912  TKQERDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQENLTQLQTQLEALEQDLPDPWPE 971

Query: 669  ----QDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSL 724
                QD  + +L+ +  L E E +I+  +K +EA E   +  +   E  +A L +L++ L
Sbjct: 972  IPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKL 1031

Query: 725  NQERSELQNAKQRIADF 741
                 E      RI +F
Sbjct: 1032 QTIAGERTELLLRIENF 1048



 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 125/658 (18%), Positives = 268/658 (40%), Gaps = 101/658 (15%)

Query: 197 IDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQT---- 252
           + Q+  E+ Q  +Q++ L I+ E ++    +   +L+   +   Q   Q +HQ Q     
Sbjct: 345 VGQIQAEISQ--SQQQFLHIQQEKSFHNTQTLP-QLEAAVQTSQQQLEQLRHQAQAIASA 401

Query: 253 ---YRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGI 309
              +  E +QL R +   + EL+ + S L  ++++    +   LAEL  +  ++S +   
Sbjct: 402 SEAWVQEQTQLSRTVNQLQDELIPQRSQL-AQLEERQQQLLTNLAELTPLLTKVSVE--- 457

Query: 310 TKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNE 369
                  +E+K  A    + + N Q EA  +  Q+   D+ +L+QE  L  +       E
Sbjct: 458 -------LEEKQFA----QGQFNFQGEALTSQIQTLASDLAQLEQERSLLQETQTRLLKE 506

Query: 370 FEQKQSDSLLKLETEYKALQHKINEFKNESATKSE--------ELLNQERELFEKRREI- 420
            ++KQ   L KLE   +A Q     +  +   +S+          L Q    ++   EI 
Sbjct: 507 QQEKQR-QLDKLEAASQAQQEVQGTYATKVILQSDLPGVCGLVAQLGQVEPQYQLALEIA 565

Query: 421 -----------DTLLTQASLEYEHQRESSQ---LLKDKQNEVKQHFQNLEYAKKELDKER 466
                      D  +  A +E   Q ++ +   L  +K    K    NL YA   +D   
Sbjct: 566 AGGRLGFLVVEDDGVAAAGIEILKQAKAGRATFLPLNKIRPPKGQNPNLSYAHGYIDLAV 625

Query: 467 NLLDQQKK------------------VDSEAIFQLKEKVAQERKELEELYLVKKQKQDQK 508
           NL+D  ++                  V++         V  E   LE    +    ++Q+
Sbjct: 626 NLIDGDRRYADIFAFIFGNTIVFDTLVNARNHLGKHRIVTLEGDLLEASGAMSGGSRNQR 685

Query: 509 E--------NELLFFEKQLKQHQADFENELEAKQQELFEAK----HALERSFIKLEDKEK 556
                    +E     KQL+Q   D + +++ + +EL   +      L +  +++  +++
Sbjct: 686 SGLRFGTMVSEDTAEVKQLRQRLQDIQ-QVQGRNEELLLERTVRSRQLTQQLMEMRQQQR 744

Query: 557 DLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSN 616
           +     +Q   + ++L   +++    ++  Q +   LQQ    L Q     E+  A    
Sbjct: 745 EAQLHGEQTERDIARLSQQQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQQLA---- 800

Query: 617 XXXXXXXXXXXXXXTLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKLQDFSQTSL 676
                         T  + +++ +Q + I Q + + + A  ++Q + L ++ +D  +   
Sbjct: 801 --------SAQQQLTALETSQTHQQWQTI-QIQIRTVEAEYQRQLQAL-RQGEDHLKDLQ 850

Query: 677 NASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQ 736
           N+S+ L E+   I   +++I   + Q L      E ++  LA++N ++    ++L    +
Sbjct: 851 NSSQRLEEK---IAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSE 907

Query: 737 RIADF--HNDSLK-KLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLNRE 791
           ++       D L+ +LN+     Q++  + + L+ NQ+++  +N    + +L+ L ++
Sbjct: 908 KLGSTKQERDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQ-ENLTQLQTQLEALEQD 964



 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 107/547 (19%), Positives = 209/547 (38%), Gaps = 107/547 (19%)

Query: 42   QLLKEIKSLEDELKNLKGLKNQAEDNPELDKKINHLEVDLNRLVNEYKN-----FQFQKN 96
            ++LK+ K+       L  ++     NP L     ++++ +N +  + +      F F   
Sbjct: 586  EILKQAKAGRATFLPLNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFGNT 645

Query: 97   HMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLNDFHRLIENQN 156
             + D +    N     K+ +  L+    D L +  A ++    N  + L  F  ++    
Sbjct: 646  IVFDTLVNARN--HLGKHRIVTLE---GDLLEASGA-MSGGSRNQRSGLR-FGTMVSEDT 698

Query: 157  QTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSI 216
              + +L Q++   Q +   N  LL    +             QL  +L ++  Q+R   +
Sbjct: 699  AEVKQLRQRLQDIQQVQGRNEELLLERTVRSR----------QLTQQLMEMRQQQREAQL 748

Query: 217  EYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKES 276
              E T R++             + Q Q Q   Q    + +L++L++ + L +Q L   E 
Sbjct: 749  HGEQTERDIA-----------RLSQQQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQ 797

Query: 277  ALRVKIDDADFYINARLAELDDVAKQLS-FQDGITKQNAQHVEDKLVALNKEKDRLNTQK 335
                              +L    +QL+  +   T Q  Q ++ ++  +  E  R   Q 
Sbjct: 798  ------------------QLASAQQQLTALETSQTHQQWQTIQIQIRTVEAEYQR---QL 836

Query: 336  EAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEF 395
            +A   LRQ     +  LQ  ++   + +   Q +  Q Q+  L  L  E + L+  + E 
Sbjct: 837  QA---LRQGE-DHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLT-LAQEQEQLKIALAEM 891

Query: 396  KNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNL 455
                 T   +L     +L   ++E D L TQ +            L+ +Q E +  ++ L
Sbjct: 892  NGAIQTTEAQLAKLSEKLGSTKQERDRLETQLN-----------QLRSQQQEQQWQWEKL 940

Query: 456  EYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFF 515
            +  ++E   + NL   Q ++++     L++ +     E+  L       QD+ E  L   
Sbjct: 941  QTNQQEY--QENLTQLQTQLEA-----LEQDLPDPWPEIPLL-------QDRDEANL--- 983

Query: 516  EKQLKQHQADFENELEAKQQELFEAKHALER----SFIKLEDKEK------DLNTKAQQI 565
                     DF N LE  ++ +   +  LE     + + L++ EK      +L+ K Q I
Sbjct: 984  ---------DFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTI 1034

Query: 566  ANEFSQL 572
            A E ++L
Sbjct: 1035 AGERTEL 1041


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 31/298 (10%)

Query: 307 DGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQ---QENELFAKHL 363
           DG + +   H + KL  L K+   +    E       +AL + N+L    Q  E     L
Sbjct: 63  DGESPEAVIHAKGKLRRLEKDLQSVQASLE-------NALAERNQLTENYQAQEKMVAAL 115

Query: 364 EHQQNEFEQKQSDSLLKLETEYKALQHKIN-EFKNESATKSEELLNQERELFEKRREIDT 422
           +HQ   ++  QS+  + L+        K+N E   E+   S+ L     E+ E R ++  
Sbjct: 116 QHQLAHYDDIQSEKFVGLQ--------KLNQELLQENTNLSDRLKQAVNEVAETRPKLVQ 167

Query: 423 LLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKK----ELDKERNLLDQQKKVDSE 478
           L    SL   +Q+ S QL   +QN+ K   Q L   +K      ++E+   + Q     E
Sbjct: 168 L---NSLVTRNQQLSDQLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEE 224

Query: 479 AIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELF 538
            + QL  +  Q ++EL+      +  Q Q EN     ++  +Q     E + + ++ +L 
Sbjct: 225 QVRQLTAERDQVQQELQTARQQSQSAQTQAENLQAALDRLGQQ-----EEQWQGERSQLT 279

Query: 539 EAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQE 596
              + LE +  +L     +L  K +    E  +LKT+K + A      Q +   LQQE
Sbjct: 280 AKLNQLEEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQE 337



 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 67/309 (21%), Positives = 117/309 (37%), Gaps = 45/309 (14%)

Query: 73  KINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTR---LQQENADFLNS 129
           K+  LE DL  +    +N   ++N + +     + +    +++L     +Q E    L  
Sbjct: 76  KLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKFVGLQK 135

Query: 130 KYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEK 189
               L     N  ++L      +      + +LN  +  NQ L D    + QN    +E+
Sbjct: 136 LNQELLQENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQNQAKAIEQ 195

Query: 190 KNYLLNVIDQLYNELDQL---------ENQKRLLSIEYENTYRELVSADNELQNVYENID 240
           +      + Q  +E +Q          E Q R L+ E +   +EL +A  + Q+      
Sbjct: 196 RLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELQTARQQSQSA----- 250

Query: 241 QNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVA 300
           Q Q +     Q   D L Q E + Q  + +L                   A+L +L++  
Sbjct: 251 QTQAE---NLQAALDRLGQQEEQWQGERSQLT------------------AKLNQLEEAQ 289

Query: 301 KQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFA 360
           K+L+  +   K        KL     E DRL T+K+      QSA   + +LQQE     
Sbjct: 290 KELALANAELKV-------KLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQ 342

Query: 361 KHLEHQQNE 369
           ++L   + E
Sbjct: 343 ENLAKAKGE 351



 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 60/298 (20%), Positives = 134/298 (44%), Gaps = 32/298 (10%)

Query: 254 RDELSQLERKIQLTKQELVDKESALRVKIDDADFY---------INARLAELDDVAKQLS 304
           + +L +LE+ +Q  +  L   E+AL  +    + Y         +  +LA  DD+  +  
Sbjct: 74  KGKLRRLEKDLQSVQASL---ENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKF 130

Query: 305 FQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLE 364
              G+ K N + +++     ++ K  +N   E      +  L+ +N L   N+     L 
Sbjct: 131 V--GLQKLNQELLQENTNLSDRLKQAVNEVAET-----RPKLVQLNSLVTRNQ----QLS 179

Query: 365 HQQNEFEQKQSDSL-LKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTL 423
            Q +  EQ Q+ ++  +L ++ K  Q +  + + +  +++ +   Q R+L  +R ++   
Sbjct: 180 DQLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQE 239

Query: 424 LTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQL 483
           L  A  + +  +  ++ L+   + + Q  +  +  + +L  + N L++ +K  + A  +L
Sbjct: 240 LQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAEL 299

Query: 484 KEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAK 541
           K K+   + E + L   KK++    ++     + Q+ Q     + EL A Q+ L +AK
Sbjct: 300 KVKLETTQAEGDRLKTEKKEQAAALQSA----QGQVTQ----LQQELAALQENLAKAK 349



 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 53/301 (17%), Positives = 129/301 (42%), Gaps = 47/301 (15%)

Query: 1215 LSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLK-ENLERTKDQLDK 1273
            L   + +L   L E   L++ Y A +      Q QL   Y ++   K   L++   +L +
Sbjct: 84   LQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAH-YDDIQSEKFVGLQKLNQELLQ 142

Query: 1274 KHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLED 1333
            ++ ++  RL +  N++   + +L++        N L+  N++               L D
Sbjct: 143  ENTNLSDRLKQAVNEVAETRPKLVQL-------NSLVTRNQQ---------------LSD 180

Query: 1334 QISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFEN 1393
            Q+SY E+ + +A +  LAS +++ ++  E ++                A+++ Q  ++E 
Sbjct: 181  QLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQ----------------AQWNSQASQWEE 224

Query: 1394 QRXXXXXXXXXXXXXXNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRK 1453
            Q                +   ++++ Q    + +  ++ L  Q++++   +S+L     +
Sbjct: 225  QVRQLTAERDQVQQELQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQ 284

Query: 1454 MRD---EIERKESQVKLVLKETQRKANLLEA----QANKLNIEKNTIDFKEKELKAFKDK 1506
            + +   E+    +++K+ L+ TQ + + L+     QA  L   +  +   ++EL A ++ 
Sbjct: 285  LEEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQEN 344

Query: 1507 V 1507
            +
Sbjct: 345  L 345


>SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,
           reverse complement
          Length = 1336

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 10/211 (4%)

Query: 372 QKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEY 431
           + +++S+  + T      H   +  N++   S   LN+      KR E++    Q   E 
Sbjct: 287 RSETESVNPVSTPASVEYHAGMKSLNKAPYSSNSTLNE----VNKRYELEQQQQQEEAEL 342

Query: 432 EHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQER 491
               E  +L   K+NE+K+  +     K+E  K +  L+ Q++++ E   +  E  A+++
Sbjct: 343 RRLEEQKRLQLQKENEMKR-LEEERRIKQEERKRQMELEHQRQLEEEERKRQMELEAKKQ 401

Query: 492 KELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKL 551
            EL+     +++++ +KE ELL  E Q KQ + +    L+ ++QE    K   E+S    
Sbjct: 402 MELKRQRQFEEEQRLKKERELL--EIQRKQREQETAERLKKEEQEALAKKEEEEKSKRNK 459

Query: 552 EDKE---KDLNTKAQQIANEFSQLKTDKSKS 579
            D E   +++N K   +  + + +  +++++
Sbjct: 460 VDNESYTQEINGKVDNLLEDLNAVLAEETET 490



 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 122/598 (20%), Positives = 233/598 (38%), Gaps = 62/598 (10%)

Query: 324 LNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLET 383
           +NK  +    Q++    LR+       +LQ+ENE+  K LE ++   +Q++    ++LE 
Sbjct: 325 VNKRYELEQQQQQEEAELRRLEEQKRLQLQKENEM--KRLE-EERRIKQEERKRQMELEH 381

Query: 384 EYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQRESSQLLKD 443
           + +  + +        A K  EL  Q +   E+R + +  L +   +   Q  + +L K+
Sbjct: 382 QRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETAERLKKE 441

Query: 444 KQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQ-LKEKVAQERKELEELYLVKK 502
           +Q  +         AKKE +++     ++ KVD+E+  Q +  KV    ++L  +   + 
Sbjct: 442 EQEAL---------AKKEEEEK----SKRNKVDNESYTQEINGKVDNLLEDLNAVLAEET 488

Query: 503 QKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNTKA 562
           +     +N     E+   +     +  L   + E            I L D+   LNT  
Sbjct: 489 ETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDL--NDSISLSDEIAGLNT-- 544

Query: 563 QQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLS------- 615
             ++ E    K D S     E+   N +E    E   ++ E +  +  A  +S       
Sbjct: 545 SNLSGEDQDEKNDLSFEKGDEVRYSNNFEG---EAPHVYHEVSIIQEEAPAVSQKLILPE 601

Query: 616 -NXXXXXXXXXXXXXXTLDQLTKSFEQERL--INQREHKELVASVEKQKEILGKKLQDFS 672
            N              T++ +      E L  IN     +  + +E+    L +    F+
Sbjct: 602 ENNESEALIESKEEIKTMENIDDEVLLEILTDINWSIEDDADSMIERIDLRLAETEYLFN 661

Query: 673 QTSLNASK---NLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERS 729
           Q  L+  K   N+   E  +  +   I  T    L +++N      D+  +    N  + 
Sbjct: 662 QNLLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSN---FSNDIENVESQDNGLQV 718

Query: 730 ELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLN 789
           E  N K+ + +  ++ LK ++  E+SL       Q LE   ++   +N  + E +L+ L 
Sbjct: 719 ESAN-KKLLWNTLDELLKTVSLDEISLN------QLLECPIRE---KNLPWMENQLNLLL 768

Query: 790 REKQAF---LNLRKKQTMEVDAIKQRLSDKHQA----LNMQQAELDRKTHELNNAFLNHD 842
           +  QA     N  +    E+  +KQRL    +     LN    E+ +K   +    ++HD
Sbjct: 769 KAFQAIGSDGNEVEYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISHD 828

Query: 843 ADQKSLQDQL---ATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKI 897
              + L   L     +   +++      A++E      + V  +   W+ K SQLQ I
Sbjct: 829 QMIRILTTLLIFSPLILFCKEISQKSYQAIVENWNVSIQPV--YMELWTKKISQLQGI 884



 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 70/307 (22%), Positives = 131/307 (42%), Gaps = 28/307 (9%)

Query: 1083 QSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNF-----QRFSNEA 1137
            Q   EL R  E+        N+++   +  R +   + RQ  LE +       ++   E 
Sbjct: 337  QEEAELRRLEEQKRLQLQKENEMKRLEEERRIKQEERKRQMELEHQRQLEEEERKRQMEL 396

Query: 1138 NAKKAFLIKRLRSF--ASNLKLQKEALAIQKLEFDKRD-EQQKKELQQATLQLEQFKFEK 1194
             AKK   +KR R F     LK ++E L IQ+ + ++   E+ KKE Q+A  + E+ +  K
Sbjct: 397  EAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETAERLKKEEQEALAKKEEEEKSK 456

Query: 1195 QNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQ--TYLANKNKAEYSQQQLQQ 1252
            +N  ++ +     I  + + L ++  A+  +  E     Q  TY+  ++ A  +  QL++
Sbjct: 457  RN-KVDNESYTQEINGKVDNLLEDLNAVLAEETETTPTMQNGTYVPERSTAR-AHDQLKK 514

Query: 1253 -----KYTNL--LDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDD 1305
                 K  +L   DL +++  + +       ++        NDL FEK   ++       
Sbjct: 515  PLNIAKVESLGGSDLNDSISLSDEIAGLNTSNLSGEDQDEKNDLSFEKGDEVRY------ 568

Query: 1306 KNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQK 1365
             N    E     H +S   E   AV +  I     +    ++A++ S +E+K  E    +
Sbjct: 569  SNNFEGEAPHVYHEVSIIQEEAPAVSQKLIL---PEENNESEALIESKEEIKTMENIDDE 625

Query: 1366 LLVELET 1372
            +L+E+ T
Sbjct: 626  VLLEILT 632



 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 32/147 (21%), Positives = 78/147 (53%), Gaps = 8/147 (5%)

Query: 920  SDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQ 979
            +++ K Y++ + Q+ +E      ++++  +L ++N   +LE + R +  + ++Q  ++ Q
Sbjct: 323  NEVNKRYELEQQQQQEEAELRRLEEQKRLQLQKENEMKRLEEERRIKQEERKRQMELEHQ 382

Query: 980  LELEREQHQLNLEQTAFNQ---ANESLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLF 1036
             +LE E+ +  +E  A  Q     +   ++ ++L K+ +    + K+R Q  A   +RL 
Sbjct: 383  RQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETA---ERLK 439

Query: 1037 AKEQD--QQRKDQEINWRFKQFEKEYT 1061
             +EQ+   +++++E + R K   + YT
Sbjct: 440  KEEQEALAKKEEEEKSKRNKVDNESYT 466


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 52/248 (20%), Positives = 109/248 (43%), Gaps = 44/248 (17%)

Query: 295 ELDDVAKQLSFQDGITKQNAQ---HVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINK 351
           +LDD+  QL       +Q +Q    +E +L A+ +E+  +  +          AL  + +
Sbjct: 77  QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRR 136

Query: 352 LQQENELFAKHLEHQQNEFEQ--KQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQ 409
           + +++    + + +   E  Q  +Q DSLL   +E   LQ ++     E + + E +  Q
Sbjct: 137 VSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSE---LQSQVKLRDQELSKRQERIAQQ 193

Query: 410 ERELFEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLL 469
           E+ L                    QRE  Q L       ++ F +LE  +++L  E N  
Sbjct: 194 EKVL------------------ARQREQVQSL-------EKRFASLEAQRQQLQAEINQR 228

Query: 470 DQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENE 529
           D   K+D     QL + +A +  +++     +++K    E EL F ++++++ +  +++ 
Sbjct: 229 D--TKID-----QLDQAIAAKDNDIQ----AREEKLQGLETELSFLQREVEELERYYQDY 277

Query: 530 LEAKQQEL 537
            E + Q++
Sbjct: 278 QELRGQQI 285


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.311    0.128    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,208
Number of Sequences: 78
Number of extensions: 11535
Number of successful extensions: 671
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 93
length of query: 1805
length of database: 48,235
effective HSP length: 76
effective length of query: 1729
effective length of database: 42,307
effective search space: 73148803
effective search space used: 73148803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 99 (42.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)
         (1139 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)      2171   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036       56   5e-10

>MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)
          Length = 1139

 Score = 2171 bits (5626), Expect = 0.0
 Identities = 1080/1139 (94%), Positives = 1080/1139 (94%)

Query: 1    MAKNKQSVFEEKNYTQTEPENIFGDLYDGKSTVEEDPNIKVAYDADGNGYYIAFNKETGV 60
            MAKNKQSVFEEKNYTQTEPENIFGDLYDGKSTVEEDPNIKVAYDADGNGYYIAFNKETGV
Sbjct: 1    MAKNKQSVFEEKNYTQTEPENIFGDLYDGKSTVEEDPNIKVAYDADGNGYYIAFNKETGV 60

Query: 61   YYDPYGDTEYDISQLFDENGNPFVFDEKQEENDYLKYVGNPDYGSYDENGEWVWSGYFEN 120
            YYDPYGDTEYDISQLFDENGNPFVFDEKQEENDYLKYVGNPDYGSYDENGEWVWSGYFEN
Sbjct: 61   YYDPYGDTEYDISQLFDENGNPFVFDEKQEENDYLKYVGNPDYGSYDENGEWVWSGYFEN 120

Query: 121  DQWISTKESQPTDENYGFDSDLPPEVKQPESVEDNYGFDNDLPPEVKQPESVEDNYGFDN 180
            DQWISTKESQPTDENYGFDSDLPPEVKQPESVEDNYGFDNDLPPEVKQPESVEDNYGFDN
Sbjct: 121  DQWISTKESQPTDENYGFDSDLPPEVKQPESVEDNYGFDNDLPPEVKQPESVEDNYGFDN 180

Query: 181  DLPPEVKQPESVVDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQ 240
            DLPPEVKQPESVVDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQ
Sbjct: 181  DLPPEVKQPESVVDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQ 240

Query: 241  PESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANLD 300
            PESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANLD
Sbjct: 241  PESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANLD 300

Query: 301  NNEEIQPTAEKKVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFDQVNS 360
            NNEEIQPTAEKKVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFDQVNS
Sbjct: 301  NNEEIQPTAEKKVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFDQVNS 360

Query: 361  EVNDQFKPEITKEPVLESSFNKQDVVETXXXXXXXXXXXXXXKDATNNDSLNSEFIQLNS 420
            EVNDQFKPEITKEPVLESSFNKQDVVET              KDATNNDSLNSEFIQLNS
Sbjct: 361  EVNDQFKPEITKEPVLESSFNKQDVVETSDLNSESNLYSENNKDATNNDSLNSEFIQLNS 420

Query: 421  NSETASDDVHYESKSEPIHDYKFGXXXXXXXXXXXXXXXPVKFNSETAPDAHFESQSEPV 480
            NSETASDDVHYESKSEPIHDYKFG               PVKFNSETAPDAHFESQSEPV
Sbjct: 421  NSETASDDVHYESKSEPIHDYKFGSDLSQSNSNNSLESEPVKFNSETAPDAHFESQSEPV 480

Query: 481  DQVQYDIYQNEELKPTLDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDH 540
            DQVQYDIYQNEELKPTLDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDH
Sbjct: 481  DQVQYDIYQNEELKPTLDQPSSDDYFAKQPTDENYGFDNDLPPEVKQPESVVDQPSSDDH 540

Query: 541  FAKQPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQ 600
            FAKQPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQ
Sbjct: 541  FAKQPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQ 600

Query: 601  ANLDNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFD 660
            ANLDNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFD
Sbjct: 601  ANLDNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFETQPTVEQFD 660

Query: 661  QVNSEVNDQFKPEITKEPVLESSFNKQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQ 720
            QVNSEVNDQFKPEITKEPVLESSFNKQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQ
Sbjct: 661  QVNSEVNDQFKPEITKEPVLESSFNKQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQ 720

Query: 721  IPTTLPISFVSNRIEYKPVETLALDNKESQQEQITINSITEDSKTLAKTXXXXXXXXXXX 780
            IPTTLPISFVSNRIEYKPVETLALDNKESQQEQITINSITEDSKTLAKT           
Sbjct: 721  IPTTLPISFVSNRIEYKPVETLALDNKESQQEQITINSITEDSKTLAKTLSVQLQQINSL 780

Query: 781  XXXXXXTSESVRLDKKDDQLTINTVNSEDQQPKIEVFVKAKEPVEEHSITQNKQSVEDKS 840
                  TSESVRLDKKDDQLTINTVNSEDQQPKIEVFVKAKEPVEEHSITQNKQSVEDKS
Sbjct: 781  NNQSIVTSESVRLDKKDDQLTINTVNSEDQQPKIEVFVKAKEPVEEHSITQNKQSVEDKS 840

Query: 841  ELDNFNKKSDLYKIISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQI 900
            ELDNFNKKSDLYKIISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQI
Sbjct: 841  ELDNFNKKSDLYKIISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQI 900

Query: 901  SERYLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNS 960
            SERYLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNS
Sbjct: 901  SERYLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNS 960

Query: 961  YEQLQKSGEIMRHVQRAITENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFA 1020
            YEQLQKSGEIMRHVQRAITENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFA
Sbjct: 961  YEQLQKSGEIMRHVQRAITENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFA 1020

Query: 1021 KKEKDPLLLSNFDSVTDNGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRNIDFE 1080
            KKEKDPLLLSNFDSVTDNGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRNIDFE
Sbjct: 1021 KKEKDPLLLSNFDSVTDNGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRNIDFE 1080

Query: 1081 FEGFNNDFVDIDAKVMDSMSAFSVNDLDIETLVPDRTSNXXXXXXXXXXXXXGDFSLDY 1139
            FEGFNNDFVDIDAKVMDSMSAFSVNDLDIETLVPDRTSN             GDFSLDY
Sbjct: 1081 FEGFNNDFVDIDAKVMDSMSAFSVNDLDIETLVPDRTSNFSSLLDEDLFESSGDFSLDY 1139


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 56.2 bits (134), Expect = 5e-10
 Identities = 170/853 (19%), Positives = 317/853 (37%), Gaps = 103/853 (12%)

Query: 240  QPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANL 299
            Q E+ +   +    L   T +   LD+  Q     H  LK   E  +  +     V+ +L
Sbjct: 750  QTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLK---ENFSILETELKNVRDSL 806

Query: 300  DNNEEIQPTAEKKVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFET--QPTVEQFDQ 357
            D   +++   E K   D E++ A +   Y+  I   +    T     ET      +  D 
Sbjct: 807  DEMTQLRDVLETK---DKENQTALL--EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDG 861

Query: 358  VNSEVNDQFKPEITKEPVLESSFNKQ---DVVETXXXXXXXXXXXXXXKDATNNDSLNSE 414
            +N    D F      + V E+  N Q   D                     T   ++N  
Sbjct: 862  INKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINEN 921

Query: 415  FIQLNSNSETASDDVHYESKSEPIHDYKFGXXXXXXXXXXXXXXXPVKFNSETAPDAHFE 474
              ++       S +  + SK   + +YK                     N+     A  E
Sbjct: 922  LEEMKIQCNNLSKEKEHISKE--LVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENE 979

Query: 475  SQSEPVDQVQYDI-YQNEELKPTLDQPSSDDYFAKQPTDENYGFDN-DLPPEVKQ-PESV 531
            S  + V++ + +   Q   L+  +D  S +         EN+  +   +   ++Q  +++
Sbjct: 980  SLIKAVEESKNESSIQLSNLQNKIDSMSQEK--------ENFQIERGSIEKNIEQLKKTI 1031

Query: 532  VDQPSSDDHFAKQPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNN 591
             D   + +    + +S+ D Y     L +  L+  +  +    N +   EL    EE   
Sbjct: 1032 SDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTAN--DENVNKISELTKTREELEA 1089

Query: 592  YQVGFDQVQANLDNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQ---------- 641
                +  ++  L+   E    A KEV  + E  + + +   +   +T QQ          
Sbjct: 1090 ELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLES 1149

Query: 642  ------DQTTFSSSFETQPTVEQFDQVNSEVNDQFKPEITK-EPVLESSFNKQDVVE--- 691
                  D       +E Q   ++  Q N E++ Q   EIT  +   ES   K D +E   
Sbjct: 1150 LEKEHEDLAAQLKKYEEQIANKE-RQYNEEIS-QLNDEITSTQQENESIKKKNDELEGEV 1207

Query: 692  -----TSNYTNNLQKFDIQSDN-KITITTKKSSPQIPT-----------TLPISFVSNRI 734
                 TS   +NL+K +I + N +I    KK+     +           T+ I  + +  
Sbjct: 1208 KAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDEC 1267

Query: 735  EYKPVETLALDNK--ESQQEQITINSITEDSKTL-----AKTXXXXXXXXXXXXXXXXXT 787
             +K  E   L++K   S+ +      + ++S+ +     AKT                  
Sbjct: 1268 NFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKE 1327

Query: 788  SESVRLDKKDDQLTINTVNSEDQQPKI--EVFVKAKEPVEEHSITQNKQSVEDKSELDNF 845
                 L +     +    N+E+Q  K+  E+ +K +   +E  +     S   +   +  
Sbjct: 1328 KSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKI 1387

Query: 846  NKKSD-LYKIISE--LKRGELNPTIN-FDAIFQMNDYQMSVKQSFIH-LNDFVTNYKNQI 900
            N   D L ++ +E  LK  E++ T +  + +   ND  +  KQ+ I  L D + +YK++I
Sbjct: 1388 NTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKI 1447

Query: 901  S---ERYLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKP 957
            +   E+ L I+++ + +L       E+L  Q   A+  +  + EE ++ L  +       
Sbjct: 1448 TRNDEKLLSIERDNKRDL-------ESLKEQLRAAQE-SKAKVEEGLKKLEEE------S 1493

Query: 958  SNSYEQLQKSGEIMRHVQRAITENEKKI----ESIQGSLKQLKTVYNSCCETIMN-NINK 1012
            S    +L+KS E+M+ ++  I  NE ++    E+I+ S ++L+    S  E I N    K
Sbjct: 1494 SKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEK 1553

Query: 1013 LDNTLRFAKKEKD 1025
             D   R  + EKD
Sbjct: 1554 SDLISRINESEKD 1566



 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 113/579 (19%), Positives = 218/579 (37%), Gaps = 86/579 (14%)

Query: 544  QPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANL 603
            Q E+ +   +    L   T +   LD+  Q     H  LK   E  +  +     V+ +L
Sbjct: 750  QTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLK---ENFSILETELKNVRDSL 806

Query: 604  DNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFET--QPTVEQFDQ 661
            D   +++   E   T D E++ A +   Y+  I   +    T     ET      +  D 
Sbjct: 807  DEMTQLRDVLE---TKDKENQTALL--EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDG 861

Query: 662  VNSEVNDQFKPEITKEPVLESSFNKQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQI 721
            +N    D F      + V E+  N Q   + SN  +  +   ++ D    IT  K+  + 
Sbjct: 862  INKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINEN 921

Query: 722  PTTLPIS----------FVSNRIEYKP---------------VETLALDNKESQQEQITI 756
               + I                +EYK                +++LA + K+ Q E  ++
Sbjct: 922  LEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESL 981

Query: 757  NSITEDSKTLAKTXXXXXXXXXXXXXXXXXTSESVR--LDKKDDQLTINTVNSEDQQPKI 814
                E+SK  +                     +  R  ++K  +QL   T+ S+ +Q K 
Sbjct: 982  IKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLK-KTI-SDLEQTKE 1039

Query: 815  EVFVKAKEPVEEH----SITQNKQSVEDKSELDNFNKKSDLYKIISELK---------RG 861
            E+  K+    +E+    S+ + K      +  +N NK S+L K   EL+         + 
Sbjct: 1040 EIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKN 1099

Query: 862  ELNPTINFD--AIFQMNDYQMSVKQSFIHLNDFVTNYKNQISERYLIIKKELQSELSRLI 919
            EL   +     A+ ++ + +  +K+  I L    T  K Q++         L++ L  L 
Sbjct: 1100 ELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNS--------LRANLESLE 1151

Query: 920  DQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNSYEQLQKSGEIMRHVQRAIT 979
             ++E+L  Q         L+K E          IA K     E++ +  + +   Q+   
Sbjct: 1152 KEHEDLAAQ---------LKKYEE--------QIANKERQYNEEISQLNDEITSTQQENE 1194

Query: 980  ENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFAKKEKDPLLLSNFDSV--TD 1037
              +KK + ++G +K +K+          + I+ L+  ++  KK+ +    S  +S+   +
Sbjct: 1195 SIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVE 1254

Query: 1038 NGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRN 1076
            +  V+  +L D+       F      +L+D +  + D+N
Sbjct: 1255 SETVKIKELQDEC-----NFKEKEVSELEDKLKASEDKN 1288


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.307    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,317
Number of Sequences: 78
Number of extensions: 7477
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 11
length of query: 1139
length of database: 48,235
effective HSP length: 73
effective length of query: 1066
effective length of database: 42,541
effective search space: 45348706
effective search space used: 45348706
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MGEN-G37-01-000335 MG328  conserved hypothetical protein
         (756 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MGEN-G37-01-000335 MG328  conserved hypothetical protein             1415   0.0  
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...   206   2e-55
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036      100   3e-23
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)        87   2e-19
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054     76   3e-16
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443     70   3e-14
SYNE-PCC-01-000727 sll1120                                             46   5e-07
SYNE-PCC-01-000943 sll1424                                             44   2e-06
MJAN-DSM-01-001277 MJ1254  hypothetical protein                        42   5e-06

>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score = 1415 bits (3662), Expect = 0.0
 Identities = 729/756 (96%), Positives = 729/756 (96%)

Query: 1   MAVDKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEA 60
           MAVDKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEA
Sbjct: 1   MAVDKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEA 60

Query: 61  EKEKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVL 120
           EKEKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVL
Sbjct: 61  EKEKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVL 120

Query: 121 TKEIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTD 180
           TKEIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTD
Sbjct: 121 TKEIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTD 180

Query: 181 KVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYN 240
           KVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYN
Sbjct: 181 KVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYN 240

Query: 241 NKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQE 300
           NKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQE
Sbjct: 241 NKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQE 300

Query: 301 NRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVX 360
           NRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPV 
Sbjct: 301 NRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVL 360

Query: 361 XXXXXXXXXXXXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELL 420
                       TAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELL
Sbjct: 361 NNQINELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELL 420

Query: 421 FDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQ 480
           FDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQ
Sbjct: 421 FDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQ 480

Query: 481 KKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDK 540
           KKALDEKLNGLTIQNQQLQDKIAELEEWNEEKS              KDSQNLFNVAQDK
Sbjct: 481 KKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDK 540

Query: 541 LATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNK 600
           LATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNK
Sbjct: 541 LATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNK 600

Query: 601 LNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTS 660
           LNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTS
Sbjct: 601 LNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTS 660

Query: 661 DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIK 720
           DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIK
Sbjct: 661 DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIK 720

Query: 721 KRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE 756
           KRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE
Sbjct: 721 KRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE 756


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil protein,
            putative structural protein involved in cytosceleton
            [Mycoplasma pneumoniae]
          Length = 1033

 Score =  206 bits (525), Expect = 2e-55
 Identities = 194/711 (27%), Positives = 324/711 (45%), Gaps = 136/711 (19%)

Query: 153  VSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIE-----------NLTKAI 201
            VSFE    Q   +        +QI   +++ +P Q+D    ++           NLT+ +
Sbjct: 352  VSFEMTLLQEQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERIELLQNQNTNLTQEL 411

Query: 202  NPVHKTIQYDQNDDQPFVVKRILKEQHPTKK--VDELDDYNNKELLLENADLKKQIDDLK 259
            N + + +   QN+    ++ R+ +E    K+   + L + N    +LE     KQ++ L+
Sbjct: 412  NELQQKLFKSQNNS--LLLARLEEENRTLKQHLQNNLPEANQLNFVLE-----KQLEQLQ 464

Query: 260  ENNNDQIFDLEQE-------------IDDLKRRLSEEKSKHLHTKKLQDDL-LQENRDLY 305
            ++ +     +EQ              I  L+  ++  +++ +  K+    L L E  + +
Sbjct: 465  QDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNF 524

Query: 306  EQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKS-------SNVQQQLA--- 355
             + + K +    L+DE  +    LKQ + + +D    LK           + Q+QLA   
Sbjct: 525  LKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQ 584

Query: 356  -----LLPVXXXXXXXXXXXXXTAREANQRLDLVEQENDFLKNELKKLHDNTS--NDENE 408
                 L+                A+   Q+  ++EQ+N  L   L+   +N       N 
Sbjct: 585  RHNEALVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNS 644

Query: 409  KYDDLLNQYELL------FDENETKFDKLQVKQQALNLDY-QKTISALKHENDVLLDEIE 461
            +  + LN  E        FD       K Q++Q   +L   Q+ ++  K +N  L D++ 
Sbjct: 645  ELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKL- 703

Query: 462  WTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSXXXXXXXX 521
               + +   N+ + S        DE L  L  Q++ LQ+   +L++              
Sbjct: 704  --MASETQLNHLQQS--------DENLTQLQTQHELLQESYNKLQD-----------EAN 742

Query: 522  XXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDEL-------SGSENSN---NL 571
                    +QN  + A  +LA  ++ N  L +K +++++EL       +  EN N   NL
Sbjct: 743  HTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNL 802

Query: 572  L------------------AKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLS 613
            L                  A++QA+HE+LQESY K+K +  +++   LN+AN QYQDLLS
Sbjct: 803  LQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLS 862

Query: 614  AFEETNSELEKAKQSLSASDS---ENNQLKQQINS--------------LENAKKELQFT 656
            A+E   S   K KQ L   +    E  QL Q++++              L+ A   LQ T
Sbjct: 863  AYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQAT 922

Query: 657  PVTSDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDE-------- 708
            P  SDE L++   +++EK++L  +N AL ++LQYFN+++++QT EIK   DE        
Sbjct: 923  PPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETVKEVIIV 982

Query: 709  DKPVEI---KKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE 756
            +K + +   KKPR+KKRD VI+NK+D L KLSKKERIQAYAERLAKIN  +
Sbjct: 983  EKEIPVPPEKKPRLKKRDIVIENKEDALGKLSKKERIQAYAERLAKINGKQ 1033



 Score =  202 bits (515), Expect = 2e-54
 Identities = 157/626 (25%), Positives = 302/626 (48%), Gaps = 60/626 (9%)

Query: 131 LKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDD 190
           +KP+  +A       K  ATKQ   ++L  Q      + + P V     ++ K     D 
Sbjct: 286 IKPAEDSAHQSAVLDKEIATKQAQLQQLQAQIELRQAQLETPPVTYMGVEEYKLLPVQD- 344

Query: 191 FYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENAD 250
                     + PV  T+ ++    Q  + K +   +H      +L++   K L  + + 
Sbjct: 345 ----------VVPVQPTVSFEMTLLQEQLDKAL---KHNAALQIQLEEQLAKPLQYDQSP 391

Query: 251 LKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQN 310
           + ++  +L +N N    +L QE+++L+++L + ++  L   +L++    ENR L + LQN
Sbjct: 392 VLQERIELLQNQNT---NLTQELNELQQKLFKSQNNSLLLARLEE----ENRTLKQHLQN 444

Query: 311 KPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVXXXXXXXXXXX 370
                N L+  + ++LE L+Q+K  L+ Q++  K  S   Q+QLAL+P            
Sbjct: 445 NLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETE 504

Query: 371 XXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENETKFDK 430
             + ++ NQRL L+E+EN+FLK E+K+L +   NDEN KY +LL QYEL+  +++ K  +
Sbjct: 505 VISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDAKLKE 564

Query: 431 LQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQK--------- 481
           L+ +Q   +  +Q+ ++ L+  N+ L+ E++  ++ + +       FE+QK         
Sbjct: 565 LEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSS 624

Query: 482 -----KALDEKLNGLTIQNQQLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNV 536
                +A +E +  L I N +LQ+++  LE  ++EK+              + +Q   ++
Sbjct: 625 LLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSL 684

Query: 537 AQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKL 596
            Q++LAT ++ N +L +K+   E +L+  + S+  L +LQ  HE+LQESY KL+      
Sbjct: 685 TQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQLQTQHELLQESYNKLQ------ 738

Query: 597 KKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFT 656
                ++AN   Q     F +  +EL+ A Q L+     N +L  + ++++N   +L   
Sbjct: 739 -----DEANHTQQQ----FHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRV 789

Query: 657 PVT----SDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDEDKPV 712
                  + EH    +    +KEQ+  E+  L  Q+Q  +++      ++K   +E +  
Sbjct: 790 KTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLA-QIQAEHELLQESYNKVKAELNEIQIT 848

Query: 713 EIKKPRIKKRDF-----VIQNKDDKL 733
            + +   + +D      ++Q+  +KL
Sbjct: 849 NLNEANAQYQDLLSAYELLQSNHNKL 874



 Score = 50.1 bits (118), Expect = 2e-08
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 22/101 (21%)

Query: 109 MAFQEVDDQSVLTKEIKTGFQELKPSVITAEDDKDEIKPE-------------------- 148
           M F E + Q VLTKEIK GF E+ PS IT +  K ++                       
Sbjct: 1   MEFLEQEGQEVLTKEIKAGFCEITPSSITEQTTKPQLDETQLVDEYVHTKELETTPIPIS 60

Query: 149 -ATKQVSFEELFNQPS-EEINETKKPEVQIFSTDKVKEPEQ 187
            ATK+V FEE+FN PS ++++E+      I  T ++K   +
Sbjct: 61  FATKEVLFEEVFNTPSTQQVDESVLVNEYIELTQQIKNASE 101


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 99.8 bits (247), Expect = 3e-23
 Identities = 152/820 (18%), Positives = 337/820 (41%), Gaps = 134/820 (16%)

Query: 3    VDKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEAEK 62
            + KE + S+ +++ + K+L +++  +   I      +  +  + N L K       E  +
Sbjct: 886  LQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVE 945

Query: 63   EKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVLTK 122
             KS     + ++  K+ +K      L   AN  K  + E +++ +  A +E  ++S +  
Sbjct: 946  YKSRFQSHDNLV-AKLTEK------LKSLANNYKDMQAENESLIK--AVEESKNESSIQ- 995

Query: 123  EIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKV 182
                    L+  + +   +K+  + E   + S E+   Q  + I++ ++ + +I S    
Sbjct: 996  -----LSNLQNKIDSMSQEKENFQIE---RGSIEKNIEQLKKTISDLEQTKEEIIS---- 1043

Query: 183  KEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNN- 241
            K     D++ S  +L K       T     ND+    +  + K +   +   EL  Y N 
Sbjct: 1044 KSDSSKDEYESQISLLKEKLETATTA----NDENVNKISELTKTREELEA--ELAAYKNL 1097

Query: 242  -KELLLENADLKKQIDDLKENNN---DQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDL 297
              EL  +    +K + ++KEN     ++   LE+E  + K++L+  ++     +K  +DL
Sbjct: 1098 KNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDL 1157

Query: 298  LQENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNK----SSNVQQQ 353
              + +   EQ+ NK    N    ++N+E+ + +QE   +  + D L+ +     S  ++Q
Sbjct: 1158 AAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 1217

Query: 354  LALLPVXXXXXXXXXXXXXTAREANQ---------------RLDLVEQENDFLKNELKKL 398
              L                   E N+               ++  ++ E +F + E+ +L
Sbjct: 1218 SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSEL 1277

Query: 399  HDN--TSNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVL 456
             D    S D+N KY +L  + E + +E + K  +L+++ + +       +S  K +++  
Sbjct: 1278 EDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKIT-----NLSKAKEKSESE 1332

Query: 457  LDEIEWTRSKD------------NDFNNTKNSFEEQKKALDEKLNGLTIQNQQ----LQD 500
            L  ++ T S++            N+      +FE+++K L+E  + +T +  +    L+D
Sbjct: 1333 LSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLED 1392

Query: 501  KIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKI--ND- 557
            ++  L+  NE K+                +  L    Q+ + +L++  L+  +KI  ND 
Sbjct: 1393 ELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDE 1452

Query: 558  ------------------------------------LEDELSGS----ENSNNLLAKLQA 577
                                                LE+E S      E S  ++ KL++
Sbjct: 1453 KLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLES 1512

Query: 578  DHEI----LQESYGKLKTDFEKLKKNK------LNDANEQYQDLLSAFEETNSELEKAKQ 627
              E     L+ S   ++   EKL+++K      + +   +  DL+S   E+  ++E+ K 
Sbjct: 1513 TIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKS 1572

Query: 628  SLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQNQ 687
             L       ++L+     L NA+++++     +     +LE ++ E +    E ++ Q +
Sbjct: 1573 KLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEE 1632

Query: 688  LQYFN------DISANQTEEIKEASDEDKPVEIKKPRIKK 721
             +         +   + T++  + S+E++  E++K +++K
Sbjct: 1633 KELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEK 1672



 Score = 85.9 bits (211), Expect = 4e-19
 Identities = 150/748 (20%), Positives = 311/748 (41%), Gaps = 103/748 (13%)

Query: 89   NHYANQLKTREEEQQTVDQTMAFQEVDDQSVLTKEI-KTG-------------FQELKPS 134
            ++YA+++K     Q   D   +  ++++ S+LT E+ +TG             F E    
Sbjct: 656  DNYASRIK-----QFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYR 710

Query: 135  VITA-EDDKDEIKPEATKQVSFEE---LFNQPSEEINETKKPEVQIFSTDK--------- 181
            + TA   D DE   E   ++SFEE   L  Q ++   E    + +  ST +         
Sbjct: 711  IRTALSHDPDE---EPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIAL 767

Query: 182  VKEPEQFDDFYSIENLTKAINPVHKTIQYDQN--DDQPFVVKRILKEQHPTKKVDELDDY 239
              E ++ D+ Y I      +N  H +++ + +  + +   V+  L E    + V E  D 
Sbjct: 768  TNEHKELDEKYQI------LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDK 821

Query: 240  NNKELLLE-NADLKKQIDDLK--ENNNDQIFDLEQEIDD-----------LKRRLS--EE 283
             N+  LLE  + + KQ D +K  E   + I   +++ +D           L R +   EE
Sbjct: 822  ENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEE 881

Query: 284  KSKHLHTKKLQDDL--LQENRDLYEQLQNKPVAINPLSDEVNE---ELENLKQEKALLSD 338
              K+L  +K + ++   +E + L E +  K   I  +++ + E   +  NL +EK  +S 
Sbjct: 882  NCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISK 941

Query: 339  QLDALK-------NKSSNVQQQLALLPVXXXXXXXXXXXXXTAREANQRLDLVEQENDFL 391
            +L   K       N  + + ++L  L                A E ++    ++  N  L
Sbjct: 942  ELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSN--L 999

Query: 392  KNELKKLHDNTSNDENEK--YDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISAL 449
            +N++  +     N + E+   +  + Q +    + E   +++  K  +   +Y+  IS L
Sbjct: 1000 QNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLL 1059

Query: 450  KHE-------NDVLLDEI-EWTRSKDN------DFNNTKNSFEEQKKALDEKLNGLTIQN 495
            K +       ND  +++I E T++++        + N KN  E + +  ++ L  +    
Sbjct: 1060 KEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENE 1119

Query: 496  QQLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKI 555
            + L+++  +LE+   E                K+ ++L    +     +       NE+I
Sbjct: 1120 EHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEI 1179

Query: 556  NDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAF 615
            + L DE++ ++  N  + K   + E   ++      +   LKK++++  N Q ++L    
Sbjct: 1180 SQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKN 1239

Query: 616  EETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIE-- 673
            E   + L ++ +S+ +   +  +L+ + N  E    EL+     S++   +   L+ E  
Sbjct: 1240 ETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESE 1299

Query: 674  --KEQLFLENQALQNQLQYFNDI------SANQTEEIKEASDEDKPVEIKKPRIKKRDFV 725
              KE+L  +   L+ QL+   ++      S ++   +K+ S E++    ++    K +  
Sbjct: 1300 KIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQ 1359

Query: 726  IQN----KDDKLAKLSKKERIQAYAERL 749
            I+N    K+ KL         Q Y+E++
Sbjct: 1360 IKNQAFEKERKLLNEGSSTITQEYSEKI 1387



 Score = 85.1 bits (209), Expect = 7e-19
 Identities = 171/773 (22%), Positives = 313/773 (40%), Gaps = 122/773 (15%)

Query: 4    DKELEISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNL--LEKTFFGTVDEAE 61
            +  +++S+  N++D  +  KE  Q           I     E+N+  L+KT        E
Sbjct: 991  ESSIQLSNLQNKIDSMSQEKENFQ-----------IERGSIEKNIEQLKKTISDLEQTKE 1039

Query: 62   K--EKSIVSFFNWMIDLKVLDKKW-------DKNVLNHYANQLKTREEEQQTVDQTMAFQ 112
            +   KS  S   +   + +L +K        D+NV N  +   KTREE +  +      +
Sbjct: 1040 EIISKSDSSKDEYESQISLLKEKLETATTANDENV-NKISELTKTREELEAELAAYKNLK 1098

Query: 113  -----EVDDQSVLTKEIKTGFQELKPSVITAEDDKDEIKPEATK-QVSFEELFNQPSEEI 166
                 +++      KE+K   + LK   I  E +  E K +    + + E L  +  +  
Sbjct: 1099 NELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLA 1158

Query: 167  NETKKPEVQIFSTDKVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRI--L 224
             + KK E QI +    KE +  ++   + +   +    +++I+  +ND+    VK +   
Sbjct: 1159 AQLKKYEEQIAN----KERQYNEEISQLNDEITSTQQENESIK-KKNDELEGEVKAMKST 1213

Query: 225  KEQHPTKKVDELDDYNN--KELLLEN----ADLKKQIDDLKENN------NDQIFDLEQE 272
             E+    K  E+D  N   KEL  +N    A L + I  ++          D+    E+E
Sbjct: 1214 SEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKE 1273

Query: 273  IDDLKRRL--SEEK-SKHLH----TKKLQDDLLQENRDLYEQLQNKPVAINPLSDEVNEE 325
            + +L+ +L  SE+K SK+L     ++K++++L  +  +L  QL+ K   ++   ++   E
Sbjct: 1274 VSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLE-KITNLSKAKEKSESE 1332

Query: 326  LENLK----QEKALLSDQLDALKN----KSSNVQQQLALLPVXXXXXXXXXXXXXTARE- 376
            L  LK    +E+    +QL+ LKN    K+   +++  LL                  E 
Sbjct: 1333 LSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLED 1392

Query: 377  ----ANQRLDLVEQENDFLKNELKKLHDNTSNDE--NEKY-------DDLL--------N 415
                     +L  +E D  ++EL+K+  + SNDE   EK        D++L        N
Sbjct: 1393 ELIRLQNENELKAKEIDNTRSELEKV--SLSNDELLEEKQNTIKSLQDEILSYKDKITRN 1450

Query: 416  QYELLFDENETKFDKLQVKQQALNLDYQKT-----ISALKHENDVLLDEIEWTRSKDNDF 470
              +LL  E + K D   +K+Q       K      +  L+ E+     E+E ++      
Sbjct: 1451 DEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 1510

Query: 471  NNTKNS------------------FEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEK 512
             +T  S                   E+ KK+ +E +  L  +   L  +I E E+  EE 
Sbjct: 1511 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 1570

Query: 513  SXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLL 572
                              Q L N AQ+K+    E N  L  K+ D+E EL   +     +
Sbjct: 1571 KSKLRIEAKSGSELETVKQELNN-AQEKIRINAEENTVLKSKLEDIERELKDKQAE---I 1626

Query: 573  AKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSAS 632
               Q + E+L     +L+ + +  ++ K   + E+ +  +  F+   S+L++    L   
Sbjct: 1627 KSNQEEKELLTSRLKELEQELDSTQQ-KAQKSEEERRAEVRKFQVEKSQLDEKAMLL--- 1682

Query: 633  DSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQ 685
            +++ N L   +N  +  K++      T+D    E+E L  E + L  EN  L+
Sbjct: 1683 ETKYNDL---VNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLK 1732



 Score = 52.4 bits (124), Expect = 5e-09
 Identities = 88/368 (23%), Positives = 163/368 (44%), Gaps = 36/368 (9%)

Query: 10   SDFDNELDEK--TLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEA--EKEKS 65
            S    E  EK  TL  EL++  N    +  K   I   R+ LEK      DE   EK+ +
Sbjct: 1377 STITQEYSEKINTLEDELIRLQNE---NELKAKEIDNTRSELEKVSLSN-DELLEEKQNT 1432

Query: 66   IVSFFNWMI---------DLKVLDKKWD-KNVLNHYANQLKTREEEQQTVDQTMAFQEVD 115
            I S  + ++         D K+L  + D K  L     QL+  +E +  V++ +   E +
Sbjct: 1433 IKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLE-E 1491

Query: 116  DQSVLTKEIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQ 175
            + S    E++   + +K    T E ++ E+K         +E   Q  +   E  K  +Q
Sbjct: 1492 ESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIK-NLQ 1550

Query: 176  IFSTD---KVKEPEQ-FDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTK 231
               +D   ++ E E+  ++  S   +        +T++ + N+ Q  +  RI  E++   
Sbjct: 1551 HEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKI--RINAEENTVL 1608

Query: 232  KVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLS---EEKSKHL 288
            K  +L+D   +EL  + A++K   ++ KE    ++ +LEQE+D  +++     EE+   +
Sbjct: 1609 K-SKLEDIE-RELKDKQAEIKSNQEE-KELLTSRLKELEQELDSTQQKAQKSEEERRAEV 1665

Query: 289  HTKKLQDDLLQENRDL----YEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALK 344
               +++   L E   L    Y  L NK  A     D V +  ++ +QE   L+ +LD LK
Sbjct: 1666 RKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLK 1725

Query: 345  NKSSNVQQ 352
             ++S +++
Sbjct: 1726 AENSKLKE 1733


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score = 86.7 bits (213), Expect = 2e-19
 Identities = 146/679 (21%), Positives = 282/679 (41%), Gaps = 130/679 (19%)

Query: 140 DDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIENLTK 199
           D K  ++P     + F++ + Q   E N +K  +V       +KE +  +D   ++NL  
Sbjct: 5   DKKPSLQP--IYDIGFDDGYLQSEYEKNRSKT-DVDKIENQLLKEIKSLED--ELKNLKG 59

Query: 200 AINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLEN-ADLKKQIDDL 258
             N         Q +D P + K+I   +    ++  +++Y N +    +  D   ++D+L
Sbjct: 60  LKN---------QAEDNPELDKKINHLEVDLNRL--VNEYKNFQFQKNHMVDKVSELDNL 108

Query: 259 KENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPL 318
                +++  L+QE  D         SK+ +    Q +   +  D +  ++N+   IN L
Sbjct: 109 TRFYKNELTRLQQENADFLN------SKYANLANFQANYHNKLNDFHRLIENQNQTINRL 162

Query: 319 SDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVXXXXXXXXXXXXXTAREAN 378
           + ++N         + L+ + +  L+N +  V+++  LL V                E  
Sbjct: 163 NQKINGN-------QNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQL-----ENQ 210

Query: 379 QRLDLVEQENDFLK-----NELKKLHDNTSNDENEKYDDLLNQYELLFDENETKFDKLQV 433
           +RL  +E EN + +     NEL+ +++N   ++ +      +QY+   DE      K+Q+
Sbjct: 211 KRLLSIEYENTYRELVSADNELQNVYENIDQNQIQ----FKHQYQTYRDELSQLERKIQL 266

Query: 434 KQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTI 493
            +Q L +D +  +     + D  ++     R  + D    + SF++          G+T 
Sbjct: 267 TKQEL-VDKESALRVKIDDADFYIN----ARLAELDDVAKQLSFQD----------GITK 311

Query: 494 QN-QQLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALN 552
           QN Q ++DK+  L   N+EK                  +  FN+ Q  L  + ++     
Sbjct: 312 QNAQHVEDKLVAL---NKEKDRLNT-----------QKEAFFNLRQSALIDINKLQQENE 357

Query: 553 EKINDLEDELSGSENS-NNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQ-- 609
                LE + +  E   ++ L KL+ +++ LQ    + K +     +  LN   E ++  
Sbjct: 358 LFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKR 417

Query: 610 -DLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKEL--------QFTPVTS 660
            ++ +   + + E E  ++S      + N++KQ   +LE AKKEL        Q   V S
Sbjct: 418 REIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDS 477

Query: 661 D-------------EHLDELETLKIEK------EQLFLENQALQNQLQYFNDISANQTE- 700
           +             + L+EL  +K +K      E LF E Q  Q+Q  + N++ A Q E 
Sbjct: 478 EAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQEL 537

Query: 701 -EIKEA--------SDEDKPV------------EIKKPRIKKRDF--VIQNKDDKLAKLS 737
            E K A         D++K +            ++K  + K  DF  ++QN+ + L +  
Sbjct: 538 FEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEK 597

Query: 738 KK-ERIQAYAERLAKINAN 755
           +K  + + Y ER A + +N
Sbjct: 598 QKLFQERTYFERNAAVLSN 616



 Score = 86.3 bits (212), Expect = 3e-19
 Identities = 145/716 (20%), Positives = 298/716 (41%), Gaps = 121/716 (16%)

Query: 54  FGTVDEAEKEKSIVS--FFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAF 111
           +  +D+ E +K ++S  + N   +L   D +      N   NQ++ + + Q   D+    
Sbjct: 201 YNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQL 260

Query: 112 Q---EVDDQSVLTKE----IKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFNQPSE 164
           +   ++  Q ++ KE    +K    +   +   AE D      +  KQ+SF++   + + 
Sbjct: 261 ERKIQLTKQELVDKESALRVKIDDADFYINARLAELD------DVAKQLSFQDGITKQNA 314

Query: 165 EINETKKPEVQIFSTDKVKEPEQFDDFYS--------IENLTKAINPVHKTIQYDQNDDQ 216
           +  E K   +   + +K +   Q + F++        I  L +      K +++ QN+ +
Sbjct: 315 QHVEDK---LVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFE 371

Query: 217 PFVVKRILKEQHPTKKVD-ELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQEIDD 275
                 +LK +   K +  +++++ N     E+A   +++     N   ++F+  +EID 
Sbjct: 372 QKQSDSLLKLETEYKALQHKINEFKN-----ESATKSEEL----LNQERELFEKRREIDT 422

Query: 276 LKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKAL 335
           L   L++   ++ H ++    L  +  ++ +  QN   A      E+++E   L Q+K +
Sbjct: 423 L---LTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYA----KKELDKERNLLDQQKKV 475

Query: 336 LSDQLDALKNKSSNVQQQLALLPVXXXXXXXXXXXXXTAREANQRLDLVEQENDFLKNEL 395
            S+ +  LK K +  +++L  L +                   Q+ D  E E  F + +L
Sbjct: 476 DSEAIFQLKEKVAQERKELEELYLVK----------------KQKQDQKENELLFFEKQL 519

Query: 396 KKLHDNTSNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDV 455
           K+   +  N+   K  +L      L    E  F KL+ K++ LN   Q+  +        
Sbjct: 520 KQHQADFENELEAKQQELFEAKHAL----ERSFIKLEDKEKDLNTKAQQIANEFS----- 570

Query: 456 LLDEIEWTRSKDNDF-----NNTKNSFEEQKKALDEKL---NGLTIQNQQLQDKIAELEE 507
              +++  +SK  DF     N  +N  +E++K   E+        + + +LQ K  EL +
Sbjct: 571 ---QLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQ 627

Query: 508 WNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDK--LATLEEVNLALNEKINDLEDELSGS 565
             E                  + + L N  + K  +A++E+    L +K+ D       S
Sbjct: 628 QKETLDQLTKSF---------EQERLINQREHKELVASVEKQKEILGKKLQDFSQT---S 675

Query: 566 ENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKA 625
            N++  LA+ +   +  ++       + E  +K  LND N          E   ++L + 
Sbjct: 676 LNASKNLAEREMAIKFKEK-------EIEATEKQLLNDVNNA--------EVIQADLAQL 720

Query: 626 KQSLSASDSENNQLKQQINSLEN-AKKELQFTPVTSDEHLDELETLKIEKEQLFLENQA- 683
            QSL+   SE    KQ+I    N + K+L    ++  + L EL+TL+  ++Q   +NQA 
Sbjct: 721 NQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAY 780

Query: 684 -------LQNQLQYFNDISANQTEEI----KEASDEDKPVEIKKPRIKKRDFVIQN 728
                  L  + Q F ++   QT E+    +  SD+ + + +++  + ++   + N
Sbjct: 781 FEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNN 836



 Score = 77.0 bits (188), Expect = 2e-16
 Identities = 155/802 (19%), Positives = 323/802 (40%), Gaps = 112/802 (13%)

Query: 10   SDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEAEKEKSIVSF 69
            +DF+NEL+ K   +EL +  + +  S  K+     + N   +       + + +KS  + 
Sbjct: 524  ADFENELEAKQ--QELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSAD 581

Query: 70   FNWMIDLKVLDKKWDKNVLNH-----------YANQLKTREEE----QQTVDQ-TMAFQE 113
            F  M+  +  + + +K  L              +N+L+ + EE    ++T+DQ T +F++
Sbjct: 582  FELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQ 641

Query: 114  VDDQSVLTKEIKTGFQELKPSVITAEDDKDEI--KPEATKQVSFEELFNQPSEEINETKK 171
                     E     +E K  V + E  K+ +  K +   Q S     N    E+   K 
Sbjct: 642  ---------ERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREM-AIKF 691

Query: 172  PEVQIFSTDKVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTK 231
             E +I +T+K    +  +D  + E +   +  +++++  ++++ Q    K+ + + H   
Sbjct: 692  KEKEIEATEK----QLLNDVNNAEVIQADLAQLNQSLNQERSELQN--AKQRIADFHN-- 743

Query: 232  KVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTK 291
              D L   N  EL L+     +++  L+ N     +  +   +    +L+ EK   L+ +
Sbjct: 744  --DSLKKLNEYELSLQKR--LQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLR 799

Query: 292  KLQ----DDLLQENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKS 347
            K Q    D + Q   D ++ L  +   ++  + E+N    N   ++  L DQL  +K   
Sbjct: 800  KKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQ 859

Query: 348  SNVQQQLALLPVXXXXXXXXXXXXXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDEN 407
              +  + + L                 RE  + +   ++      ++L+K+++ T   E+
Sbjct: 860  KLIDLERSAL-------------LEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQES 906

Query: 408  EK----------YDDLLNQYELLFDENETKFDKLQVKQQALN----------LDYQKTIS 447
            E+          + DL   Y++   + + +F +++ KQ+ L+          L+      
Sbjct: 907  EQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQ 966

Query: 448  ALKHE-NDVLLDEIEWTRS------KDNDFNNTKNSFEEQKKALDEKLNG----LTIQNQ 496
            AL+++  D +  ++E  R       +   FN    S  +Q++ L +K+      L  +NQ
Sbjct: 967  ALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELKKRNQ 1026

Query: 497  QLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKIN 556
             L  K   L    +++               K+  +     + +L  LE++  +L++   
Sbjct: 1027 FLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNV 1086

Query: 557  DLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKN---KLNDANEQYQDLLS 613
            +LE +          L K+Q + +I ++        F   +KN     N+AN +   L+ 
Sbjct: 1087 ELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLIK 1146

Query: 614  AFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIE 673
                  S L+  K++L+    E ++  +Q       KKELQ   +       +LE  K E
Sbjct: 1147 RLRSFASNLKLQKEALAIQKLEFDKRDEQ------QKKELQQATL-------QLEQFKFE 1193

Query: 674  KEQLFLENQ----ALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNK 729
            K+   +E Q    A++ Q +  +D      +++ E  +  +     K + +     +Q K
Sbjct: 1194 KQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQK 1253

Query: 730  DDKLAKLSKKERIQAYAERLAK 751
               L  L  KE ++   ++L K
Sbjct: 1254 YTNL--LDLKENLERTKDQLDK 1273



 Score = 68.9 bits (167), Expect = 5e-14
 Identities = 143/709 (20%), Positives = 282/709 (39%), Gaps = 90/709 (12%)

Query: 102 QQTVDQTMAFQEVDD-QSVLTKEIKTGFQELKPSVITAEDDKDEIKPEATKQVSFEELFN 160
           Q   ++  +  +VD  ++ L KEIK+   ELK   +    ++ E  PE  K+++  E+  
Sbjct: 24  QSEYEKNRSKTDVDKIENQLLKEIKSLEDELKN--LKGLKNQAEDNPELDKKINHLEV-- 79

Query: 161 QPSEEINETKKPEVQI-FSTDKVKEPEQFDDFYSIE------------------------ 195
             +  +NE K  + Q     DKV E +    FY  E                        
Sbjct: 80  DLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQA 139

Query: 196 NLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQI 255
           N    +N  H+ I+     +Q   + R+ ++ +  + +      +N   LL+N ++  + 
Sbjct: 140 NYHNKLNDFHRLIE-----NQNQTINRLNQKINGNQNL-----IDNNVALLQNPNITVEK 189

Query: 256 DDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAI 315
            +   N  DQ+++   ++++ KR LS E           D+ LQ   ++YE +    +  
Sbjct: 190 KNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQ---NVYENIDQNQIQF 246

Query: 316 NPLSDEVNEELENLKQE----KALLSDQLDALKNKSSN----VQQQLALL-PVXXXXXXX 366
                   +EL  L+++    K  L D+  AL+ K  +    +  +LA L  V       
Sbjct: 247 KHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQ 306

Query: 367 XXXXXXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENET 426
                  A+    +L  + +E D L N  K+   N         + L  + EL     E 
Sbjct: 307 DGITKQNAQHVEDKLVALNKEKDRL-NTQKEAFFNLRQSALIDINKLQQENELFAKHLEH 365

Query: 427 KFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDE 486
           + ++ + KQ    L  +    AL+H+ +   +E   + +K  +  N +    E+++ +D 
Sbjct: 366 QQNEFEQKQSDSLLKLETEYKALQHKINEFKNE---SATKSEELLNQERELFEKRREIDT 422

Query: 487 KLNGLTIQ-------NQQLQDKIAELEEWNEE----KSXXXXXXXXXXXXXXKDSQNLF- 534
            L   +++       +Q L+DK  E+++  +     K                DS+ +F 
Sbjct: 423 LLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQ 482

Query: 535 ---NVAQDKLATLEEVNLALNEKINDLEDEL-----SGSENSNNLLAKLQADHEILQESY 586
               VAQ++   LEE+ L   +K +  E+EL        ++  +   +L+A  + L E+ 
Sbjct: 483 LKEKVAQER-KELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAK 541

Query: 587 GKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSL 646
             L+  F KL ++K  D N + Q + + F +  ++  K+        +E   L+Q+   L
Sbjct: 542 HALERSFIKL-EDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKL 600

Query: 647 ENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQNQLQYF-NDISANQTEEIKEA 705
              +   +         L +      ++E+L  + + L    + F  +   NQ E  +  
Sbjct: 601 FQERTYFERNAAVLSNRLQQ------KREELLQQKETLDQLTKSFEQERLINQREHKELV 654

Query: 706 SDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLS-----KKERIQAYAERL 749
           +  +K  EI   +++       N    LA+       K++ I+A  ++L
Sbjct: 655 ASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQL 703



 Score = 64.7 bits (156), Expect = 1e-12
 Identities = 144/742 (19%), Positives = 299/742 (40%), Gaps = 105/742 (14%)

Query: 94   QLKTREEEQQTVDQT---MAFQEVD-DQSVLTKEIKTGFQELKPSVITAE---DDKDEIK 146
            +L  ++E +QT  +T   +AF ++  D  V   +    F++++      +   +  +++K
Sbjct: 899  ELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVK 958

Query: 147  PEATKQVSFEELFNQPSEEIN---ETKKPEVQIFSTDKVKEPEQFDDFYSIENLTKAINP 203
             E   +  F+ L NQ  + +    E ++ + Q+                  E LTK I  
Sbjct: 959  LELDNR--FQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQA 1016

Query: 204  VHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADL----KKQIDDLK 259
             H  ++  +N       KR+  ++   ++ D+  ++  K+   E  D     K+++++L+
Sbjct: 1017 FHYELK-KRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELE 1075

Query: 260  ENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYE------------- 306
            +        L Q   +L+R+  +  +   +  K+Q +  Q NRD                
Sbjct: 1076 KIRRS----LSQSNVELERKREKLATDFTNLNKVQHNT-QINRDQLNSQIRQFLLERKNF 1130

Query: 307  -------------------------QLQNKPVAINPLSDEVNEELENLKQEKALLSDQLD 341
                                     +LQ + +AI  L  +  +E +  + ++A L  +  
Sbjct: 1131 QRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQF 1190

Query: 342  ALKNKSSNVQQQLALLPVXXXXXXXXXXXXXTAREANQRL-DLVEQENDFLKNELKKLHD 400
              + ++ ++++Q  L+ +               +  NQ+L +L      +L N+ K   +
Sbjct: 1191 KFEKQNFDIEKQRQLVAIKTQCEKLSDEK----KALNQKLVELKNLSQTYLANKNKA--E 1244

Query: 401  NTSNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLL--- 457
             +     +KY +LL+  E L    E   D+L  K +++     K  + L+ E   LL   
Sbjct: 1245 YSQQQLQQKYTNLLDLKENL----ERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQ 1300

Query: 458  ----DEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKS 513
                D+    +  + + +   N  E ++  L+++++    Q +Q  D I    +  ++K 
Sbjct: 1301 RIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKE 1360

Query: 514  XXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLA 573
                              N F     +    E   L    K+ +L+  L    NSNN   
Sbjct: 1361 GELQKLLVELETRKTKLNNDFAKFSRQREEFENQRL----KLLELQKTLQTQTNSNNF-- 1414

Query: 574  KLQADHEILQESY--GKLKTDFEKLK--KNKLNDANEQYQDLLSAFEETNSE----LEKA 625
            K +A  EI + SY  G  + +F+K +  KNK +   E ++ +    E   S+    L++ 
Sbjct: 1415 KTKAIQEI-ENSYKRGMEELNFQKKEFDKNK-SRLYEYFRKMRDEIERKESQVKLVLKET 1472

Query: 626  KQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQ 685
            ++  +  +++ N+L  + N+++  +KEL+      D+ +D     + E  +L  EN+ LQ
Sbjct: 1473 QRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDIDSTNKQRKELNELLNENKLLQ 1532

Query: 686  NQL----QYFN--DISANQTEEIKEASDEDKPVEIKK--PRIKKRDFVIQNKDDKLAKL- 736
              L    +  N  D   N+  E  +    DK + + +   R+K  +   Q + ++L    
Sbjct: 1533 QSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQT 1592

Query: 737  --SKKERIQAYAERLAKINANE 756
              S+K+ I+ +   L KIN N+
Sbjct: 1593 FDSEKQDIKNFFPPLFKINGND 1614


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 76.3 bits (186), Expect = 3e-16
 Identities = 117/558 (20%), Positives = 222/558 (39%), Gaps = 88/558 (15%)

Query: 259 KENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPL 318
           K N   ++ DL Q     +RR+S  K+   +  K  +DL +  ++   +L  K       
Sbjct: 247 KNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKK------- 299

Query: 319 SDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLA------LLPVXXXXXXXXXXXXX 372
                +E+E LK+E    S QL   K K+S++ Q++       +  +             
Sbjct: 300 ----GKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLL 355

Query: 373 TAREANQRL-DLVEQE------------NDFLKNELKKLHDNTSNDENEKYDDLLNQYEL 419
              +  +R+ DL E++            N  L+N   +L  NT     ++Y+D+    E 
Sbjct: 356 QFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQ 415

Query: 420 LF----DENETKFDKLQVKQQALNLDYQK------------TISALKHENDVLLDEIEWT 463
                 DE     ++L V Q+ L +  Q+             +S + +    LLD+   T
Sbjct: 416 KMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQT 475

Query: 464 RSKDNDFNN----------TKNSFEEQKKALDEKLNGLTIQNQQL-----------QDKI 502
                   N            N +EE+ K L+ + + L+ Q  Q+           +D +
Sbjct: 476 AKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLV 535

Query: 503 AELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDEL 562
            +LE  N E S                S  L  V QD+L  L  +N+      ++ E+++
Sbjct: 536 KKLEAKNIEISQISGKEQSLTEKNENLSNELKKV-QDQLEKLNNLNITTK---SNYENKI 591

Query: 563 SGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSEL 622
           S   + N ++  L ++++ L++   +L     ++K+N+  D    +   L AF++ N +L
Sbjct: 592 S---SQNEIVKALVSENDTLKQRIQQL----VEIKENEQKD----HTTKLEAFQKNNEQL 640

Query: 623 EKAKQSLSASDSENNQLKQQINSLENA--KKELQFTPVTSDEHL--DELETLKIEKEQLF 678
           +K    +    +   +L++Q   L+N   KKE       SD      ++  LK EK+ + 
Sbjct: 641 QKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDIT 700

Query: 679 LENQALQNQLQYFNDISANQTEEIKEASD--EDKPVEIKKPRIKKRDFVIQNKDDKLAKL 736
            E   LQ+ L+   +++ N  ++++      E K  E+++ +  KR+   +       K 
Sbjct: 701 AEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELEEIKNHKRNEPSKKGTQNFTKP 760

Query: 737 SKKERIQAYAERLAKINA 754
           S   +  A    L   N+
Sbjct: 761 SDSPKKNATTSNLFPNNS 778


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 69.7 bits (169), Expect = 3e-14
 Identities = 90/387 (23%), Positives = 167/387 (43%), Gaps = 66/387 (17%)

Query: 402  TSND--ENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDE 459
            +SND    +K+++ +N+ +    E E+K   L+ K Q       KT++ L++  D+L  E
Sbjct: 856  SSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQ-------KTVNELENTQDLLNQE 908

Query: 460  IEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSXXXXXX 519
             E  R  ++  N  K S E  +K              Q  D ++E +E + EK       
Sbjct: 909  KENLRKNESLLNRVKTSSETLQK--------------QFDDLVSEKDEISREK----LEV 950

Query: 520  XXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADH 579
                    +  Q L    +++ ATLE+++   NE I  + D        N  ++K Q+  
Sbjct: 951  AQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISD-------LNCDISKEQSSQ 1003

Query: 580  EILQESYGKLKTDFEKLKK--NKLNDANEQYQDLLSAFEETNS----ELEK----AKQSL 629
             +++ES  KL+ + ++LK   N   +  + + D LS+ EE        LEK    A   L
Sbjct: 1004 SLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRL 1063

Query: 630  SASDSENNQLKQQ-----------INSLENAKKELQFTPVTSDEHLDELETLKIEKEQLF 678
             +  +EN+ L+ +            N L+N + EL       D H  EL T   +++   
Sbjct: 1064 QSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAV 1123

Query: 679  LENQALQNQLQ----YFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKL- 733
             E+  +  +L+       +  +N  +  +E S+  +  E K+   KKR+ ++++ +D   
Sbjct: 1124 SEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQR--ETKEQEQKKRNSLVESLNDSKI 1181

Query: 734  ----AKLSKKERIQAYAERLAKINANE 756
                A+LS++  +  Y  +    N+ E
Sbjct: 1182 KELEARLSQEISLNQYLNKRISGNSVE 1208



 Score = 69.3 bits (168), Expect = 4e-14
 Identities = 160/810 (19%), Positives = 331/810 (40%), Gaps = 119/810 (14%)

Query: 4    DKELEISDFDNELDE-KTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEAEK 62
            +KE E+     ++D  K  L    ++ ++ +    KITA      L E     T  ++  
Sbjct: 1093 NKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITA-----ELKETRIQLTEYKSNY 1147

Query: 63   EKSIVSFFNWMIDLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVLTK 122
            +K    + N+  + K  ++K  +N L    N  K +E E + + Q ++  +  ++ +   
Sbjct: 1148 QKIKEEYSNFQRETKEQEQK-KRNSLVESLNDSKIKELEAR-LSQEISLNQYLNKRISGN 1205

Query: 123  EIKTGFQELKPSVITAEDDKDE---IKPEATKQVSFEELFNQPSEEINETKKPEVQIFST 179
             ++T     + S   ++D  D+   IK     Q++F E+      EI E K    ++  T
Sbjct: 1206 SVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFT 1265

Query: 180  DKVKEPEQFDDFY---SIENLTKAINPVHKTIQYDQNDDQPF---------VVKRILKEQ 227
            +       F+D      ++ L K I  +  +I  D   ++P          + K +L+  
Sbjct: 1266 ETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVD 1325

Query: 228  HPTKKVD-ELDDYNNKELLLENADLK-KQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKS 285
            +  +++D E   + + E  +     K ++I      ++  I+ L+ E  + + +  E+K 
Sbjct: 1326 YLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKL 1385

Query: 286  KHLHTK-----------KLQDDLLQENRDL-YEQLQNKPVAINPLSDEVNEELENL---- 329
            K +  +           K +D + +   ++ Y +L+N    +  + +E N +L  L    
Sbjct: 1386 KTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLEN--YKLQEILNESNGKLSQLTLDL 1443

Query: 330  ---KQEKALLSDQLDALKNKSSNVQQQLALLPVXXXXXXXXXXXXXTAREANQRLDLVEQ 386
               K ++ALLS+QLD L+    + ++Q  LL               T ++  Q+ +    
Sbjct: 1444 RQSKSKEALLSEQLDRLQKDLESTERQKELL-------------SSTIKQQKQQFE--NC 1488

Query: 387  ENDFLKNELK-KLHDNTSNDENEKYDDLLNQYELLFDENETKFDKL----QVKQQALNLD 441
             +D   NEL+ + H +      E   ++ +  E L  +N+ K +KL    ++++   ++ 
Sbjct: 1489 MDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQK-EKLIWEREMERNDSDMQ 1547

Query: 442  YQKTISALKHENDV---LLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQL 498
             Q+T+  LK   DV   L D++   + + +   + ++ + ++   L E+LN        L
Sbjct: 1548 LQETLLELKRVQDVKKILSDDLAHLKERLSAVED-RSQYTDEINRLKEELNCSLKAETNL 1606

Query: 499  QDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQDKLATLEEVNLALNEKINDL 558
            + + A L+   E                  DS+   +   D L  L+     + E +N+ 
Sbjct: 1607 KKEFATLKYKLE--------------TSTNDSEAKIS---DLLKQLDHYTKVV-EMLNNE 1648

Query: 559  EDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEET 618
            +D +S +E               L + Y  L T+ E L K K+    +  Q+L S   + 
Sbjct: 1649 KDAISLAEKE-------------LYQKYEALNTECESL-KGKIVSLTKIKQELESDLNQK 1694

Query: 619  NSELEKAKQSLSASDSENNQLKQQINSLENAKK----------ELQFT-PVTSDEHLDEL 667
               L+ +  +LS+S  +N ++ ++I  LE   +          EL  T   + + + D+ 
Sbjct: 1695 TDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKF 1754

Query: 668  ETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQ 727
            +  K +   L+ ENQ LQ      N     Q + + E   +         +I + + ++ 
Sbjct: 1755 DDEKQKNIDLYEENQTLQK----LNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVS 1810

Query: 728  NKDD-KLAKLSKKERIQAYAERLAKINANE 756
             + D K  ++ K + ++   E L   N+ +
Sbjct: 1811 LETDLKYEEMKKNKSLERAVEELQTKNSQQ 1840



 Score = 61.6 bits (148), Expect = 8e-12
 Identities = 102/533 (19%), Positives = 209/533 (39%), Gaps = 60/533 (11%)

Query: 263  NDQIFDLE---QEIDDLKRRLSEEKSKHLHTKKLQDDL-------LQENRDLYEQLQNKP 312
            N+QI  L+   QE++  K+ L E+  K ++  +   DL       L++N  L  +++   
Sbjct: 867  NEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSS 926

Query: 313  VAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQL--------ALLPVXXXXX 364
              +    D++  E + + +EK  ++  L+    K   +Q+ +         L        
Sbjct: 927  ETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELI 986

Query: 365  XXXXXXXXTAREANQRLDLVEQENDFLKNELKKLHD--NTSNDENEKYDDLLNQYELLFD 422
                       +      L+++    L+NE+K+L D  N+  +E + ++D L+  E    
Sbjct: 987  KQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSE---- 1042

Query: 423  ENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSK---DNDFNNTKNSFEE 479
              E    KL   ++  N+   +  S +   +D+      + + K   +N   N ++   +
Sbjct: 1043 --EDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLK 1100

Query: 480  QKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLFNVAQD 539
             K+ +D     L   ++Q  D ++E  +   E                K  +   N  ++
Sbjct: 1101 MKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRE 1160

Query: 540  KLATLEEVNLALNEKIND-----LEDELSGSENSNNLLAKLQADHEI-LQESYGKLKTDF 593
                 ++   +L E +ND     LE  LS   + N  L K  + + +    S  +  T +
Sbjct: 1161 TKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSY 1220

Query: 594  EKLKKNKLNDANEQYQDLLSAFEETNSELEK--------------AKQSLSASDSENNQL 639
                 +K  D  ++Y DL  AF E    LE                +  L++S  E+ ++
Sbjct: 1221 SDDPLDK-EDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKI 1279

Query: 640  KQQINSLENAKKELQ-FTPVTS--DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISA 696
            K Q+  L+   +++    P+ S  +E LD     + +  +L LE   L+ QL        
Sbjct: 1280 KAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDI------ 1333

Query: 697  NQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERL 749
             +T    +A +    +  K  +I+    +  +   KL   + +ER+++  ++L
Sbjct: 1334 -ETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKL 1385


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 69/361 (19%), Positives = 147/361 (40%), Gaps = 33/361 (9%)

Query: 99  EEEQQTVDQTMAFQEVDDQSVLTKEIKTGFQ--ELKPSVITAEDDK--DEIKPEATKQVS 154
           +E ++ +D+     E D + V TKE  T  Q  E +  +I  E ++  + +  +  K   
Sbjct: 174 KERREIIDELAGVAEFDRKIVKTKETLTEVQDREERCQIIATELERTLERLAADRQKAEK 233

Query: 155 FEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFD-DFYSIENLTKAINPVHKTIQYDQN 213
           ++ L  Q  E+    K  + +     + K   Q + D    + + +A++   + IQ  Q 
Sbjct: 234 YQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQRSQAIQTQQT 293

Query: 214 DDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNND---QIFDLE 270
           + +               +V  L +     +  + A  K Q D L++  ND   QI + +
Sbjct: 294 ELEKL-----------NAQVKALGEEEQLAVAAQLATQKAQRDQLQQRYNDGDRQITNHQ 342

Query: 271 QEIDDLKRRLSEEKSKHLHTKKLQ-----------DDLLQENRDLYEQLQNKPVAINPLS 319
           Q++  ++  +S+ + + LH ++ +           +  +Q ++   EQL+++  AI   S
Sbjct: 343 QQVGQIQAEISQSQQQFLHIQQEKSFHNTQTLPQLEAAVQTSQQQLEQLRHQAQAIASAS 402

Query: 320 DEVNEELENLKQEKALLSDQLDALKNKSSNVQQ-QLALLPVXXXXXXXXXXXXXTAREAN 378
           +   +E   L +    L D+L   +++ + +++ Q  LL                  E  
Sbjct: 403 EAWVQEQTQLSRTVNQLQDELIPQRSQLAQLEERQQQLLTNLAELTPLLTKVSVELEEKQ 462

Query: 379 QRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFD--ENETKFDKLQVKQQ 436
                   + + L ++++ L  + +  E E+      Q  LL +  E + + DKL+   Q
Sbjct: 463 FAQGQFNFQGEALTSQIQTLASDLAQLEQERSLLQETQTRLLKEQQEKQRQLDKLEAASQ 522

Query: 437 A 437
           A
Sbjct: 523 A 523



 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 73/378 (19%), Positives = 139/378 (36%), Gaps = 58/378 (15%)

Query: 241  NKELLLENADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQE 300
            N+ELLLE     +Q+         Q+ ++ Q+          ++   LH ++ + D+ + 
Sbjct: 718  NEELLLERTVRSRQL-------TQQLMEMRQQ----------QREAQLHGEQTERDIAR- 759

Query: 301  NRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVX 360
                   L  +   IN       ++L  L+Q  ALL   L  L+ + ++ QQQL  L   
Sbjct: 760  -------LSQQQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQQLASAQQQLTALETS 812

Query: 361  XXX---XXXXXXXXXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQY 417
                              E  ++L  + Q  D LK                   DL N  
Sbjct: 813  QTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLK-------------------DLQNSS 853

Query: 418  ELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSF 477
            + L ++     +K+  + QA +L   +    LK     +   I+ T ++    +    S 
Sbjct: 854  QRLEEKIAQAQEKI-AQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGST 912

Query: 478  EEQKKALDEKLNGLTIQNQQLQ---DKIAELEEWNEEKSXXXXXXXXXXXXXXKDSQNLF 534
            ++++  L+ +LN L  Q Q+ Q   +K+   ++  +E                 D     
Sbjct: 913  KQERDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQENLTQLQTQLEALEQDLPDPWPEI 972

Query: 535  NVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFE 594
             + QD+    +E NL     + +LE  +    N    L  ++  + +  + Y K +    
Sbjct: 973  PLLQDR----DEANLDFANILEELERSI---RNGQKRLEAMEPVNMLALQEYEKTEARLG 1025

Query: 595  KLKKNKLNDANEQYQDLL 612
            +L +     A E+ + LL
Sbjct: 1026 ELSEKLQTIAGERTELLL 1043


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 70/264 (26%)

Query: 254 QIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQE-----NRDLYEQL 308
           Q+DD+         +LEQ       +  EE    L   + +  L+QE     NR+  + L
Sbjct: 77  QLDDILAQLRVAKTELEQA-----SQAKEEIESELTAVREEQQLVQERSRELNRNYTKAL 131

Query: 309 QNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVXXXXXXXXX 368
           Q     ++  S  + +E+ NL  E+A L++Q D+L  +SS +Q Q+ L            
Sbjct: 132 QLLR-RVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRD---------- 180

Query: 369 XXXXTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENETKF 428
                 +E ++R + + Q+   L  + +++                          E +F
Sbjct: 181 ------QELSKRQERIAQQEKVLARQREQVQSL-----------------------EKRF 211

Query: 429 DKLQVKQQALNLDYQKTISALKHENDVLLDEIEWT-RSKDNDFNNTKNSFEEQKKALDEK 487
             L+ ++Q L  +         ++ D  +D+++    +KDND            +A +EK
Sbjct: 212 ASLEAQRQQLQAEI--------NQRDTKIDQLDQAIAAKDNDI-----------QAREEK 252

Query: 488 LNGLTIQNQQLQDKIAELEEWNEE 511
           L GL  +   LQ ++ ELE + ++
Sbjct: 253 LQGLETELSFLQREVEELERYYQD 276


>MJAN-DSM-01-001277 MJ1254  hypothetical protein
          Length = 469

 Score = 42.4 bits (98), Expect = 5e-06
 Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 564 GSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELE 623
           G+     L  K +     + E    +K +   LK NKL +  E+ ++L    ++   +L 
Sbjct: 260 GTAIFGGLFVKEKISKRKIIERTKNIKNELTSLK-NKLKEKEEEIKNLAIKIKDLEDKLS 318

Query: 624 KAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHL---DELETLKIEKEQLFLE 680
           KA ++L   D   + L ++I+  E+  ++L       DE++   +++E+L    E L  E
Sbjct: 319 KANKNLLNKDEIISVLNERISEYESQIQKLL------DENIIYKEKIESLNKYIETLKKE 372

Query: 681 NQALQNQLQYFNDISANQTEE----IKEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKL 736
           N  L+++++  +DI+    EE    +     ED+ + I    IKK   + Q +  ++  +
Sbjct: 373 NDKLKDKVRELSDIAKKYMEEKRGVLWSFLTEDEKIII--DLIKKHGHITQKEIVEITGM 430

Query: 737 SK 738
           SK
Sbjct: 431 SK 432


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.306    0.127    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,271
Number of Sequences: 78
Number of extensions: 5729
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 40
length of query: 756
length of database: 48,235
effective HSP length: 70
effective length of query: 686
effective length of database: 42,775
effective search space: 29343650
effective search space used: 29343650
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000242 sll0396 
         (224 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000242 sll0396                                            440   e-126
SYNE-PCC-01-001437 slr0081                                            174   2e-46
SYNE-PCC-01-002033 slr0947                                            159   5e-42
SYNE-PCC-01-002486 slr1584                                            159   7e-42
SYNE-PCC-01-000518 sll0789                                            156   6e-41
SYNE-PCC-01-001461 slr0115                                            151   1e-39
SYNE-PCC-01-000414 sll0649                                            150   3e-39
SYNE-PCC-01-002672 slr1837                                            139   1e-35
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   132   9e-34
SYNE-PCC-01-000523 sll0797                                            130   5e-33
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   128   2e-32
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  112   1e-27
SYNE-PCC-01-000877 sll1330                                            111   2e-27
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   100   5e-24
SYNE-PCC-01-002086 slr1042                                             79   1e-17
SYNE-PCC-01-001306 sll1905                                             75   2e-16
SYNE-PCC-01-002731 slr1909                                             71   3e-15
SYNE-PCC-01-002221 slr1213                                             64   3e-13
SYNE-PCC-01-002489 slr1588                                             63   9e-13
SYNE-PCC-01-002635 slr1783                                             60   8e-12
SYNE-PCC-01-002788 slr1982                                             59   2e-11
SYNE-PCC-01-002618 slr1760                                             59   2e-11
SYNE-PCC-01-001133 sll1673                                             59   2e-11
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    54   4e-10
SYNE-PCC-01-001160 sll1708                                             52   1e-09
SYNE-PCC-01-001132 sll1672                                             52   2e-09
SYNE-PCC-01-002879 slr2104                                             52   2e-09
SYNE-PCC-01-000608 sll0921                                             49   1e-08
SYNE-PCC-01-001075 sll1592                                             49   2e-08
SYNE-PCC-01-000800 sll1228                                             48   3e-08
SYNE-PCC-01-002873 slr2098                                             47   4e-08
SYNE-PCC-01-002617 slr1759                                             46   1e-07
SYNE-PCC-01-002778 slr1969                                             40   5e-06
SYNE-PCC-01-001575 slr0312                                             40   5e-06

>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  440 bits (1131), Expect = e-126
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60
           MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS
Sbjct: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60

Query: 61  GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120
           GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR
Sbjct: 61  GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120

Query: 121 THTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERV 180
           THTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERV
Sbjct: 121 THTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERV 180

Query: 181 WGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVLRD 224
           WGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVLRD
Sbjct: 181 WGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVLRD 224


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  174 bits (441), Expect = 2e-46
 Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 13/231 (5%)

Query: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPD-------LIIVNG 54
           SHR+LVVE+E  +   + L L+ EGY+V    DG       QEF  D       LII++ 
Sbjct: 30  SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89

Query: 55  ALPGMSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARI 114
            LP ++GL++CR LR  G   PI++++AK    E+V GL+ GADDYI KPF+  E  AR 
Sbjct: 90  MLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 115 RVQLRRTHTTSDEVLQFADLR----FNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQV 170
           R  +RR     + +  F   R    + +  R + RG+  + L  KEF LL+  +S+ R+V
Sbjct: 150 RAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEE-VSLAPKEFRLLELFMSYPRRV 208

Query: 171 LTREQILERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGY 220
            +REQ++E +WG DFMGDS  ++V+IR+LR KLE    +P  + TVRG GY
Sbjct: 209 WSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  159 bits (403), Expect = 5e-42
 Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 10/226 (4%)

Query: 7   VVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCR 66
           +V++E  + R +E  L   GY+V  A DG +      E  PDL++++  +P + G  +C+
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 67  RLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHTT-- 124
            LR+  S IPII++TA  DV +R+ GL+ GADDY+VKPF+  E  ARIR  LRR      
Sbjct: 61  ELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 125 ----SDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERV 180
               S  VLQ A +R + + R++ +GD  I LT  EF LL+ L+S + +  +R +IL+ V
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 181 WGY--DFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVLR 223
           WGY  +   D+ +++V+I  LR KLE     P LI T RG GY+ +
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  159 bits (402), Expect = 7e-42
 Identities = 81/220 (36%), Positives = 136/220 (61%), Gaps = 1/220 (0%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           R+L+VE++  LA  +   L  + Y V +A D    +  A     DL+I++  LP + G+ 
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123
           LC++ R     +PI+++TA+D + +++ GLDAGADDY+VKP +  E FAR+R  LRR   
Sbjct: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121

Query: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183
           T   VL++  +R + ST E+   + ++ LT KE+ +L+ LL + R+VL+R  I++ +W  
Sbjct: 122 TCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWKL 181

Query: 184 DFMGDSNIIEVYIRYLRLKLEAAG-EPRLIQTVRGVGYVL 222
           +   + + ++V++R LR KL++AG     I+TV G+GY L
Sbjct: 182 ESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  156 bits (394), Expect = 6e-41
 Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQE--FPPDLIIVNGALPGMSG 61
           R+L+VE+E  L   +E  L+ E Y V   +DG   ++   +      L I +  +PG+SG
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
           LELC++LR   S +PI+++TAKD + +RV GLDAGADDY++KPF   E  AR+R   RR+
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 122 HTTSDEVLQFADLRFNRSTREIQRGDRL-IDLTAKEFELLDYLLSHARQVLTREQILERV 180
                + LQ      +  T  +   ++  I LTAKEF+LL+Y + H +Q+L+ EQI  ++
Sbjct: 122 PELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQL 181

Query: 181 WGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
           W       SN++   +R LR KLE      LI+TV G+GY
Sbjct: 182 WALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGY 221


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  151 bits (382), Expect = 1e-39
 Identities = 87/227 (38%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           R+L+++++  ++  + + L+  GYDV  A DG+KG   A +  PDLI+++  LP + G  
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 64  LCRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
           +C+RLR  E  + IP++++TA   +++++ G D+GADDY+ KPF+ +E  AR+R  LRRT
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 122 H-----TTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQI 176
                     E+L    L       E     + I LT  EFELL  LL    Q ++   I
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 177 LERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVL 222
           L  VWGY+   D   I V+IR+LR KLE     PR I+TV G GY L
Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  150 bits (379), Expect = 3e-39
 Identities = 89/232 (38%), Positives = 139/232 (59%), Gaps = 14/232 (6%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64
           +L+VE+++++A+ +   L+ E +   V  DG  G    QE  PDLI+++  LP + GLE+
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 65  CRRLREM-GSRIP-IILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTH 122
           C R+R+  GS+ P I+++TAK +  +R++GL  GADDY+VKPF+  E  AR+R  LRR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 123 TTSDEVLQF-------ADLRFNRSTREIQRGDRL--IDLTAKEFELLDYLLSHARQVLTR 173
                V Q         DL  ++++R   +GDR   ++LT  EF LL   +S+  +V  R
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASR--YQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191

Query: 174 EQILERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVLRD 224
            Q++E++WG DF GD  +++ +IR LR K+E     P  I+TV G+GY   D
Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFED 243


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  139 bits (349), Expect = 1e-35
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64
           +L+V++E  L   +   L ++G+ + VA  G  G   A     DL+I++  LP +SGLE+
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 65  CRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR---- 120
           CR++R +G   P++ +TAKD +++RV GLDAG DDY++KPF   E  AR+R  LRR    
Sbjct: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSHG 123

Query: 121 ---THT---TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTRE 174
              T T     + +L   ++  + + +      + I L+ KE  LL   L    Q+L+ E
Sbjct: 124 ETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHE 183

Query: 175 QILERVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
           +I   +W  +    SN++   +R LR K+E    PRLI +V G GY
Sbjct: 184 EIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGY 229


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  132 bits (332), Expect = 9e-34
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60
           M+ ++L+VE+E  +   + L L  + YDV  A D      + +E  P LI+++  LPG S
Sbjct: 1   MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRS 59

Query: 61  GLELCRRLREMGS--RIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118
           G++  + +++  S   IPII++TAK   E+ +  L+AGADDYI KPF+     ARI    
Sbjct: 60  GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119

Query: 119 RRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILE 178
           RR +    + +Q  +L  + + + +    + I+L++ EF+LL + + H  +V +REQ+L 
Sbjct: 120 RRIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLN 179

Query: 179 RVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
           R+W  D   +   ++ YIR LR  L        IQTVRG GY
Sbjct: 180 RIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGY 221


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  130 bits (326), Expect = 5e-33
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKG--FTQAQEFPPDLIIVNGALPGMSG 61
           R+L+VE+E  L   ++  L  E Y V    DG +   + + Q     L IV+  LPG+SG
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
           LELC++LR  G+ +P++++TA  + E RV GLDAGADDY+ KPF   E  AR+R   RR+
Sbjct: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRS 121

Query: 122 HTTSDEVLQFADLRFNRS--------TREIQRGDRLIDLTAKEFELLDYLLSHARQVLTR 173
                ++L   +   + S        +  +    + I LT +EF++  YL+ +  ++++ 
Sbjct: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181

Query: 174 EQILERVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220
            +I +++W  D    SN++   +R +R KL     P  I+TV G GY
Sbjct: 182 SKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGY 228


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  128 bits (321), Expect = 2e-32
 Identities = 69/219 (31%), Positives = 128/219 (58%), Gaps = 4/219 (1%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           R+L++E++  +   +++ L   G+ V    DG  G       P D ++++  LP + GLE
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123
           + ++ R     +P++++TA+D ++ERV GL +GADDY+ KPF   E  AR++  +RR + 
Sbjct: 62  VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYG 121

Query: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183
               V++ A ++ +++ R +   ++ I LT++E++LL+  + +  +VL+R  I E++  +
Sbjct: 122 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSW 181

Query: 184 DFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222
           D    S  ++V+I  LR KL      + I+TV GVGY L
Sbjct: 182 DEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  112 bits (279), Expect = 1e-27
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 8/225 (3%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           ++L+V+++ +L   +   L+ EG+DV  A +GL+   +  E    L++++  +P ++G+E
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGIE 61

Query: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123
             + +R++ S +P++++TA+ +  +RV+GL+ GADD + KPFN  E  ARI+  LRR+ +
Sbjct: 62  TLKEIRKV-SNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120

Query: 124 TSDEVLQFADLRFNRSTREIQRG-----DRLIDLTAKEFELLDYLLSHARQVLTREQILE 178
            S+ +     L F+  T     G     +  ++LT  EF++L  LL     V++RE++  
Sbjct: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180

Query: 179 RVWGYDFMGDSNIIEVYIRYLRLKL-EAAGEPRLIQTVRGVGYVL 222
            V           ++++I  LR KL +   +P   +T+RG GY L
Sbjct: 181 EVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYAL 225


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  111 bits (277), Expect = 2e-27
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEF----PPDLIIVNGALPGMS 60
           + VVE    L   +   L+  GY V        GF QA++      P L +++  L    
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQC----SGFHQARQAFNNQLPTLAVIDSDLTDGD 61

Query: 61  GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120
           G+ELCR L +    + I +++AKD  ++ V GL AGADDY+ KPF   EF ARI   +RR
Sbjct: 62  GIELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120

Query: 121 THTTSDE-VLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILER 179
             T +   +L +  L+ +   R ++     +DLT +EF LL  L       L+R ++L R
Sbjct: 121 VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR 180

Query: 180 VWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGY 220
            W  + + +   I+ ++  LR K+E    +P LIQTVR VGY
Sbjct: 181 AWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  100 bits (248), Expect = 5e-24
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 10/226 (4%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           ++LVVE+E      ++   + EGYDV  A +G++          +L++++  LPG +GL 
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT-- 121
           L R LRE  S +P+I +T +D+  ++++GL+ GADDY+ KPFN  E   R R  L R   
Sbjct: 65  LARELREELS-LPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123

Query: 122 HTTSDEVLQFADLRFN------RSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQ 175
           H   +        RFN       S   I    +   L   EF  + +   +  ++ TRE+
Sbjct: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183

Query: 176 ILERVWGYDFMGDSNIIEVYIRYLRLKLE-AAGEPRLIQTVRGVGY 220
           +L+++ G +       ++V IR +R   E     P +I T+ G GY
Sbjct: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 79.0 bits (193), Expect = 1e-17
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64
           VL+VE+       +   LK  G+ V++A DG++   + Q F PDL++++  +P M+G E+
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 65  CRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR 119
           CRR++       +P+I+ ++K +  +R  G+  GAD YI KPF   E    I+  LR
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 74.7 bits (182), Expect = 2e-16
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 2/124 (1%)

Query: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61
           S  +LVV++ ++    +   L+ EGY  +    G +   +  +  PDLI+++  +PGM G
Sbjct: 17  SFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDG 76

Query: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR 119
           LE+C RL++      IP+I +TA ++ ++ +     GA DY+ KPF+  E  AR++  L 
Sbjct: 77  LEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLE 136

Query: 120 RTHT 123
              T
Sbjct: 137 LKQT 140



 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGL-- 62
           +L+ E+     +  +L LK  GY V V  +G +  +   +   D+++++  +P M GL  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 63  -ELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
            E  RR +    R  II +TA     +R   L +G +DY+ KP   +     ++V     
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAATAL 861

Query: 122 HTTSDE 127
            +TS +
Sbjct: 862 QSTSQD 867


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 71.2 bits (173), Expect = 3e-15
 Identities = 48/181 (26%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61
           ++ +L+V+++  L   ++  L+Y+GY V+ A +G +         PD+I+ +  +P M G
Sbjct: 7   NYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDG 66

Query: 62  LELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR 119
                ++R+    S IP++ ++AK     RV GL+ GAD Y+ KPF  +E  A+++  LR
Sbjct: 67  YAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR 126

Query: 120 RTHTTSDEVLQFADLRFNRSTR-EIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILE 178
           +    +D +LQ  +     + R ++ R   L     K  +L+   L++ R++    ++ +
Sbjct: 127 Q----ADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLAN-REIADHLKVSQ 181

Query: 179 R 179
           R
Sbjct: 182 R 182


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSV-ARDGLKGFTQAQEFPPDLIIVNGALPG- 58
           M  ++L+VE+E  +A+ +   LK +GY++ V A DG     +  EF PDL++++  + G 
Sbjct: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60

Query: 59  MSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118
           + G+E+  R++ + S IPI+ +TA  D E            Y++KPF  ++  + + + +
Sbjct: 61  IDGIEVAERIKSLYS-IPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAI 119


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 62.8 bits (151), Expect = 9e-13
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLK--GFTQAQEFPPDLIIVNGALPGMSGL 62
           +LVVE+E  +   +   L  E Y +  A +G    G   + E  PDLII +  +P M G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 63  ELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120
            L   L++    + IP I +TA   +++   G+++GADDY++KPF  ++    +  +L++
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 5   VLVVEEEEKLARFMELELKYEG-YDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           +L+V++E  +   ++  L+  G + V +A +  + +   Q   P L+I +  +P + G +
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 64  LCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
             ++LRE      +P++ +TA+    +R+ G   G D ++ KPF+ DE  A +R  L R 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177

Query: 122 HTTSDEVLQFADLR 135
             +SD   + A L+
Sbjct: 178 QASSDAGSESAKLQ 191


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           +VL+VE+ E     +   L  +GY+V +A DG +  T A    P LI+++ +LP + G  
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 64  LCRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKP 104
             ++++    G+ IPII +TA     +R   + AG DDY  KP
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 43/180 (23%), Positives = 91/180 (50%), Gaps = 23/180 (12%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
           ++LVV+++  +   + + L+ EG+ V +A +G +  T+  E  P++++++  +P M G  
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 64  LCRRLREMGSRIP--IILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121
            C+ L ++       +++IT  DD        +AGA DY+ KP +    +A +R +++R 
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIH----WAVLRQRVKRL 128

Query: 122 HTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVW 181
                       L  NR   +++  +++++  AK  +L    L++ RQ+   E  L+  W
Sbjct: 129 ------------LYQNRLQHQLESVNQMLERLAKVDQLTQ--LANRRQL---ELFLDTEW 171


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 26  GYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCRRLR--EMGSRIPIILITAK 83
           GY V     G       Q   PDLI+++  +P M G ++C  ++  E    IPII I+A 
Sbjct: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91

Query: 84  DDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQ 117
            D  ++V   + G  DYI KPF  +E  ARI  Q
Sbjct: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQ 125


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 4   RVLVVEEEEKLAR----FMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGM 59
           +VL++++   + R     +EL+  +E   V+    G +G + A +  PD+II++  + G+
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEV--VADVSSGTEGISVALQTSPDVIILDLNMKGL 63

Query: 60  SGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIR---- 115
           SGL+  + LR  G    I+++T  D   +    +DAGAD Y++K    D    +I+    
Sbjct: 64  SGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQ 123

Query: 116 -----------VQLRRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLL 164
                      + L RTH   D  L     R     R+I  G     + A+ F   + + 
Sbjct: 124 GEVILSDSIKNLLLERTH--EDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVK 181

Query: 165 SHARQVLTREQILERV 180
            H R +L +  +  RV
Sbjct: 182 VHIRNLLRKLNVHSRV 197


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 4   RVLVVEEEEKLARFMELEL-KYEGYDVSVARD-GLKGFTQAQEFPPDLIIVNGALPGMSG 61
           ++L+VE++  +   +E  L  +E +++    D G     QA    PDLI+++  LPG+ G
Sbjct: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77

Query: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVK 103
           +E  +++++   +I I+++T+     E +  L +GAD Y VK
Sbjct: 78  IEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 3   HRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGL 62
           +++LVV+++    + +   L   G+++  A +G +     + + P LI ++  +P M G 
Sbjct: 630 YKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGY 689

Query: 63  ELCRRLREM--GSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120
           E  + ++    G+   ++ +TA    EE+ + L AG DD++ KPF  +  F  +   L  
Sbjct: 690 EATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSLTKHLGV 749

Query: 121 TH 122
           T+
Sbjct: 750 TY 751


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64
           +L+VE+ E    F    L  +G  V VA +G +  T       D I+++  +P ++G + 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 65  CRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFF 111
            R +R  E    +PII +TA     ++   LDAG +D++ KP   D  F
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 4   RVLVVEEEEKLARFMELELKYE-GYD-VSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61
           R+ ++E+E+ + + ++  L  E  ++ V  A +G  G    Q+  PD++I++  LP M+G
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVK 103
           +++ ++L++  +  +  ++++T  D  E  +    AGAD Y +K
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 2   SHRVLVVEEEEKLARFMELELKYE-GYDVS-VARDGLKGFTQAQEFPPDLIIVNGALPGM 59
           S R+L+VE++E     +   L  E G DV+  A DG        +   D++I++  LPG+
Sbjct: 7   SIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGI 66

Query: 60  SGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIR 115
            G+E C +++++  ++P++++T+          ++A A  Y VK   ++     IR
Sbjct: 67  GGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIR 122


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61
           + +VLVV++  +    +   L   G+ V  A +G       + + P +I+++  +P + G
Sbjct: 417 NQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476

Query: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118
               ++++    G    II +TA     ER   L AG DD++ KPF  +E  A +   L
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHL 535


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 4    RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
            R+L+VE+ E         L+  G++V VA +GL    +       L++++  +P M G+E
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 64   LCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARI 114
                +R+    +++PI+ +TA     +R   L AG +D++ KP   +E + ++
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038



 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFT-----QAQEFPPDLIIVNGALPG 58
           RVLVV++ +     M+  L+   + V     G +          +  P  ++ ++  +P 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 59  MSGLELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFF 111
           M GLE+ RRL+ MG   +  I ++TA    E  V     G DD +VKP +    F
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLF 886


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 4    RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63
            ++L+ E+     +     L   GY V++A +G +     ++   DL++++  +P M G+ 
Sbjct: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250

Query: 64   LCRRLRE---MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDE 109
             CR +R+   +  +  I+ +TA     +R   LDAG D YI KP + ++
Sbjct: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQ 1299


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 40.4 bits (93), Expect = 5e-06
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS---- 60
           V+V+E++E++A  +   L    Y V    D      Q +   P LIIV+G    ++    
Sbjct: 632 VIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDFVDVTEVTR 691

Query: 61  GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIR 115
           G++  RR+    S++ + L++      E       G DDY++KP   +    R++
Sbjct: 692 GIKKSRRI----SKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRVQ 742


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 40.4 bits (93), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 42/87 (48%)

Query: 29  VSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCRRLREMGSRIPIILITAKDDVEE 88
           ++ A +G +     +E  PD+ +++  +P + G+     +  +     II++T  D  E+
Sbjct: 35  IAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAIVKFARIIVLTTYDSDED 94

Query: 89  RVMGLDAGADDYIVKPFNSDEFFARIR 115
              GL AGA  Y++K    DE    IR
Sbjct: 95  IYRGLQAGAKGYLLKETEPDELLNAIR 121


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.324    0.143    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,339
Number of Sequences: 78
Number of extensions: 944
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 38
length of query: 224
length of database: 48,235
effective HSP length: 60
effective length of query: 164
effective length of database: 43,555
effective search space:  7143020
effective search space used:  7143020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000295 sll0474 
         (806 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000295 sll0474                                           1490   0.0  
SYNE-PCC-01-002879 slr2104                                            167   2e-43
SYNE-PCC-01-002873 slr2098                                            163   2e-42
SYNE-PCC-01-000800 sll1228                                            147   1e-37
SYNE-PCC-01-001280 sll1871                                            142   3e-36
SYNE-PCC-01-002778 slr1969                                            137   1e-34
SYNE-PCC-01-002617 slr1759                                            135   4e-34
SYNE-PCC-01-001509 slr0210                                            134   1e-33
SYNE-PCC-01-001306 sll1905                                            134   1e-33
SYNE-PCC-01-000891 sll1353                                            131   7e-33
SYNE-PCC-01-001294 sll1888                                            127   2e-31
SYNE-PCC-01-001132 sll1672                                            124   1e-30
SYNE-PCC-01-000985 sll1475                                            114   9e-28
SYNE-PCC-01-001517 slr0222                                            107   2e-25
SYNE-PCC-01-001690 slr0473                                             79   4e-17

>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score = 1490 bits (3858), Expect = 0.0
 Identities = 764/806 (94%), Positives = 764/806 (94%)

Query: 1   MVQEKPRFTRPLRYQLLAGCALILMITSAIAVVLTRQQLQEKSRINIITRAQRLTEGLEF 60
           MVQEKPRFTRPLRYQLLAGCALILMITSAIAVVLTRQQLQEKSRINIITRAQRLTEGLEF
Sbjct: 1   MVQEKPRFTRPLRYQLLAGCALILMITSAIAVVLTRQQLQEKSRINIITRAQRLTEGLEF 60

Query: 61  AAEGLVETKDVYRLNRLAQNYATWPNVQTISIVDPNGILIAHGGEIKMVRGEKYAQVTPA 120
           AAEGLVETKDVYRLNRLAQNYATWPNVQTISIVDPNGILIAHGGEIKMVRGEKYAQVTPA
Sbjct: 61  AAEGLVETKDVYRLNRLAQNYATWPNVQTISIVDPNGILIAHGGEIKMVRGEKYAQVTPA 120

Query: 121 LFPIFEQVSISGIPQSLITQIEEEEVVVYALPFNTYSFPEQGESYRDQNSHRRGVAITIL 180
           LFPIFEQVSISGIPQSLITQIEEEEVVVYALPFNTYSFPEQGESYRDQNSHRRGVAITIL
Sbjct: 121 LFPIFEQVSISGIPQSLITQIEEEEVVVYALPFNTYSFPEQGESYRDQNSHRRGVAITIL 180

Query: 181 SKQELNREVNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLGKLHRALINYDNTEQFN 240
           SKQELNREVNQ                              PLGKLHRALINYDNTEQFN
Sbjct: 181 SKQELNREVNQGLLLVVGSFIIGIVVILLLLGLLIRYAVLLPLGKLHRALINYDNTEQFN 240

Query: 241 LPPLPSNEIGFLGQTLVQTFNQLQIYQREALEIAERKYVEIAQRYELASQATRVWVWECQ 300
           LPPLPSNEIGFLGQTLVQTFNQLQIYQREALEIAERKYVEIAQRYELASQATRVWVWECQ
Sbjct: 241 LPPLPSNEIGFLGQTLVQTFNQLQIYQREALEIAERKYVEIAQRYELASQATRVWVWECQ 300

Query: 301 PKIHYFEVDPNLITWLGFEQPLEPADGDFFIHLGDRPMFWQAIEQSLEDPTMELSTELRL 360
           PKIHYFEVDPNLITWLGFEQPLEPADGDFFIHLGDRPMFWQAIEQSLEDPTMELSTELRL
Sbjct: 301 PKIHYFEVDPNLITWLGFEQPLEPADGDFFIHLGDRPMFWQAIEQSLEDPTMELSTELRL 360

Query: 361 EAANGEIYHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDE 420
           EAANGEIYHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDE
Sbjct: 361 EAANGEIYHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDE 420

Query: 421 FLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXX 480
           FLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRH            
Sbjct: 421 FLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLS 480

Query: 481 KIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVL 540
           KIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVL
Sbjct: 481 KIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVL 540

Query: 541 INLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEP 600
           INLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEP
Sbjct: 541 INLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEP 600

Query: 601 FVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIPCVFQDKDGPR 660
           FVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIPCVFQDKDGPR
Sbjct: 601 FVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIPCVFQDKDGPR 660

Query: 661 HRGQLVEVTNHGSPTPIIITLISKNSAYATTLSSYFRAKGYQMQWLNCLYPTAAELTQLV 720
           HRGQLVEVTNHGSPTPIIITLISKNSAYATTLSSYFRAKGYQMQWLNCLYPTAAELTQLV
Sbjct: 661 HRGQLVEVTNHGSPTPIIITLISKNSAYATTLSSYFRAKGYQMQWLNCLYPTAAELTQLV 720

Query: 721 KIGDQSCHVLVMDLANTGEEVKDKLDEIRKFFGSSPITIIALVDATEQTKSNIAQLEIAT 780
           KIGDQSCHVLVMDLANTGEEVKDKLDEIRKFFGSSPITIIALVDATEQTKSNIAQLEIAT
Sbjct: 721 KIGDQSCHVLVMDLANTGEEVKDKLDEIRKFFGSSPITIIALVDATEQTKSNIAQLEIAT 780

Query: 781 NELLVKPVRFHRLMEIVREETCPVPR 806
           NELLVKPVRFHRLMEIVREETCPVPR
Sbjct: 781 NELLVKPVRFHRLMEIVREETCPVPR 806


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  167 bits (422), Expect = 2e-43
 Identities = 136/442 (30%), Positives = 219/442 (49%), Gaps = 58/442 (13%)

Query: 258 QTFNQLQIYQREALEIAE-----RKYVEIAQRYELASQATRVWVWECQPKIHYFEVDPNL 312
           Q    +Q+   E   IA      +K  E   RY LA    ++  WE     +     P +
Sbjct: 266 QDVETVQLISNEIWRIARSRRLVKKLTESENRYRLAQAIAKIGNWELDYATNVLFWSPEV 325

Query: 313 ITWLGFEQPLEPADGDF-----FIHLGDRPMFWQAIEQSLEDPTMELSTELRLEAANGEI 367
                FE   +   G +      IH GDR +  +A +  L+          RL   +G I
Sbjct: 326 FNL--FEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQCHLQK-YQPYDIVHRLLMPDGRI 382

Query: 368 YHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLK---------------------- 405
            +   +     ++    +   GTI D+TE+++A+  L+                      
Sbjct: 383 KYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTQELENSQE 442

Query: 406 --LSNKILAK-ATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIV 462
             L  K++A+ AT+ K EFLANMSHE+RTP+N+I+GM E +   +   L  +Q   L+ V
Sbjct: 443 SLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKV 499

Query: 463 ENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVN--HSLTFVQQFAIQKQINLSS 520
           + +G              K+EAG+++L+  P SV  ++   HS+  +Q  A  K + L+ 
Sbjct: 500 QYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEA--KGLTLNF 557

Query: 521 EIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLS 579
            + P +P +LV D+ RL Q+LINL NNA+KFT +G ++ ++  L+K    EN Q+  +L 
Sbjct: 558 HLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQG-EITIRGQLLKT---ENEQT--KLQ 611

Query: 580 FTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKL 639
           F+V DTGIG+  D+ + +F+ F Q +++ +R+Y GTGLGL++ K + EL GG + + S +
Sbjct: 612 FSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVV 671

Query: 640 NEGSRFKITI------PCVFQD 655
            +GS F  T+      P V QD
Sbjct: 672 GQGSTFHFTVCLGTASPAVAQD 693


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  163 bits (412), Expect = 2e-42
 Identities = 109/320 (34%), Positives = 169/320 (52%), Gaps = 22/320 (6%)

Query: 330 FIHLGDRPMFWQAIEQSLEDPTM---ELSTELRLEAANGEIYHCLLRGQIHQEQGEAFVK 386
           ++ LGDR       +Q LE+ T      S   ++    GEI   L        +G+    
Sbjct: 445 YVDLGDR-------QQMLEELTQFGRSQSRVYKMYNPRGEIRDILATFLATDYEGQK--G 495

Query: 387 IIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQ 446
           I+G +ADIT IK AE ++K + ++  +A+++K +FLANMSHE+RTP+N+++GM       
Sbjct: 496 ILGWLADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKT 555

Query: 447 VYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTF 506
              P   +Q + L  +  SG+H            KIEAG++ ++     +  ++++  T 
Sbjct: 556 DLTP---RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATL 612

Query: 507 VQQFAIQKQINLSSEIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIK 565
           + + A  K + L  +I  NLP   + D  RL Q+LIN  NNA+KFT +G   +V      
Sbjct: 613 ISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVV----- 667

Query: 566 EQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKI 625
            + +E       L   V DTGIGI+ + + N+F  F Q DS+  R + GTGLGL++ K+I
Sbjct: 668 -RLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRI 726

Query: 626 VELHGGSVTVTSKLNEGSRF 645
            EL GG V V S+  +GS F
Sbjct: 727 AELMGGEVGVESEYGQGSTF 746


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  147 bits (371), Expect = 1e-37
 Identities = 98/267 (36%), Positives = 140/267 (52%), Gaps = 6/267 (2%)

Query: 386 KIIGTIADITEIK-KAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQ 444
           K++G    I + + +AE  L  + +    A + K EFLA++SHELRTPLN+I+G  + L 
Sbjct: 130 KLVGQFLAIAQARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLH 189

Query: 445 NQVYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSL 504
                P       +L+I+  SG H            KIEAGR  L+        L+++  
Sbjct: 190 RD---PSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQ 246

Query: 505 TFVQQFAIQKQINLSSEIIPNLPD-VLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADL 563
              Q  A +KQ+ L  E  P +P+ +  D  +L QVLINLL NAIKFT +GG  +    L
Sbjct: 247 ALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCL 306

Query: 564 IKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVK 623
              Q  E   +   L F V DTG GI A  ++ +F PF Q ++ L +   G GLGL + +
Sbjct: 307 TAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGL-KSCQGNGLGLPISQ 365

Query: 624 KIVELHGGSVTVTSKLNEGSRFKITIP 650
           K V+L GG + V SK+++GS F   IP
Sbjct: 366 KFVQLMGGQIQVRSKVDQGSAFFFAIP 392


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  142 bits (359), Expect = 3e-36
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 7/255 (2%)

Query: 396 EIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQ 455
           E++   + L+L++     A   K  FLANMSHELRTPLN+I+G  E L  +     + + 
Sbjct: 416 ELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEEL 475

Query: 456 VQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQ 515
           V  L+ +  SG+             KIEAG+M+L L   ++  L+   L  +        
Sbjct: 476 VPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNN 535

Query: 516 INLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSP 575
             L  EI     +V  D  +L Q ++NLL+NA KFT +G         I E+ K + +  
Sbjct: 536 NKLEVEISLESEEVYGDLIKLRQGILNLLSNASKFTKDG-----IISFIVEEFKVDEKD- 589

Query: 576 PQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTV 635
             LSF V DTGIG+  ++++ +F+PF Q DS+  R+Y GTGLGL++ +K  ++ GG + +
Sbjct: 590 -WLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYL 648

Query: 636 TSKLNEGSRFKITIP 650
           TS++  GS F I +P
Sbjct: 649 TSEIGVGSSFTIKLP 663


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  137 bits (345), Expect = 1e-34
 Identities = 100/318 (31%), Positives = 157/318 (49%), Gaps = 20/318 (6%)

Query: 396 EIKKAEEQLKLSNKILAK--ATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN- 452
           E +  E   +L + ++A   A  LK +F+ N+SHELRTPL SI+G+  TL      P + 
Sbjct: 355 EKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASL 414

Query: 453 --GKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQF 510
              KQ   L  ++ +G+             ++E+G+  L+    S+  L    +  +   
Sbjct: 415 PPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGV 474

Query: 511 AIQKQINLSSEIIPNL--PDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQG 568
           AI++QINL  +   N+       D+ RL Q+L  LLNNA+KFTP  G V+++        
Sbjct: 475 AIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRI------W 528

Query: 569 KENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVEL 628
           KE++Q+     F V DTGIGI   +L  +FE F     +    Y+  G+GL+L K++VEL
Sbjct: 529 KESNQA----IFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVEL 584

Query: 629 HGGSVTVTSKLNEGSRFKITIPCVFQDKDGPRHRGQLVEVTNHGSPTPIIITLISKNSAY 688
           HGG + V S   +G+ F   IP   Q    P  +GQ+ +  +   P    + +I ++   
Sbjct: 585 HGGYIEVESSPGQGTIFTTVIP---QQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEI 641

Query: 689 ATTLSSYFRAKGYQMQWL 706
           AT +        YQ+ WL
Sbjct: 642 ATLICELLTVANYQVIWL 659


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  135 bits (341), Expect = 4e-34
 Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 40/336 (11%)

Query: 325  ADGDFFIHLGDRPMFWQAIEQSLEDPTMELSTELRLEAANGEIYHCLLRGQIHQEQGEAF 384
            A+G   +H  DR   W A E  L            LEA   ++   L +  + +++ E  
Sbjct: 707  ANGIIALHQCDRQRVWTADEIEL------------LEAIAEQMGIALAQAALLEKERERR 754

Query: 385  VKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQ 444
                       E+ +   +L+ +      A + K EFLA MSHE+RTP+N ++GM E L 
Sbjct: 755  ----------RELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELL- 803

Query: 445  NQVYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSL 504
              +   LN +Q+  ++ +  SG              KIEA ++ L+     +  L+   L
Sbjct: 804  --IMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVL 861

Query: 505  TFVQQFAIQKQINLSSEIIPNLPD-VLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADL 563
                  A  K + L+  I P  P  +L D+ RL Q+L NL+ NA+KFT +G  V+     
Sbjct: 862  EMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLT---- 917

Query: 564  IKEQGKENSQS----------PPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYD 613
            +K +  + ++S            ++ F + DTGIGI  DR + +F+ F Q+DS+  R+Y 
Sbjct: 918  VKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYG 977

Query: 614  GTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITI 649
            GTGLGL + +++ ++ GG +TVTS+   GS F+  I
Sbjct: 978  GTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI 1013


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  134 bits (336), Expect = 1e-33
 Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 422 LANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXXK 481
           L+++ HE RTPL +I+G    L++++YG LN KQ Q ++   NS  H            K
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 482 IEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLI 541
           I+A   +L     +V  L    ++ VQ  A +KQ+ L+  I   +    VD+RR  Q+LI
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILI 309

Query: 542 NLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPF 601
           NLL+N +KFTP+G   +     +K   K        L F+V DTGIGI+ +   ++F+PF
Sbjct: 310 NLLSNGVKFTPKGSVTLA----VKATDK-------ALIFSVIDTGIGIDPEDQRDLFQPF 358

Query: 602 VQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650
            QI    +    GTGLGL+L +++ +LHGG + +TS    GS F   +P
Sbjct: 359 KQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  134 bits (336), Expect = 1e-33
 Identities = 86/248 (34%), Positives = 134/248 (54%), Gaps = 15/248 (6%)

Query: 398 KKAEEQLKLSNKILAKAT-------QLKDEFLANMSHELRTPLNSILGMIETLQNQVYGP 450
           ++  +QL   N+ L  AT       + K EFLA MSHE+RTP+N+I+GM   L +     
Sbjct: 294 RRMRQQLAEQNQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLDT---D 350

Query: 451 LNGKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQF 510
           L  +Q    + + NSG              KIEAG++DL++ P  +   +  +L  V   
Sbjct: 351 LTTQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPS 410

Query: 511 AIQKQINLSSEII-PNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGK 569
           A QK + L    + P  P++  D  RL Q+L+NLL+NA+KFT E G+V V  +++     
Sbjct: 411 ARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFT-EAGQVKVTVEVVDHDAA 469

Query: 570 ENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELH 629
           +      Q+ F V DTGIGI  ++   +F+ F Q +S++ RR+ GTGLGL++  ++  L 
Sbjct: 470 KGEY---QICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALM 526

Query: 630 GGSVTVTS 637
           GG++   S
Sbjct: 527 GGTIWAES 534


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  131 bits (330), Expect = 7e-33
 Identities = 86/264 (32%), Positives = 137/264 (51%), Gaps = 11/264 (4%)

Query: 393 DITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN 452
           +I E ++ E +L+ + +    A ++K EFLAN+SHE+RTP+N+ILG  + L  +      
Sbjct: 575 EIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQ 634

Query: 453 GKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAI 512
            K+   L  + +S +             KIEAG++ + L P  +  ++          A 
Sbjct: 635 TKKY--LNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAE 692

Query: 513 QKQINLSSEIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVV---VQADLIKEQG 568
            K + L+ +I   L   +  D  RL Q+L NL+ NA+KFT EG   +   V+   ++ QG
Sbjct: 693 SKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQG 752

Query: 569 KENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVEL 628
              S     L+  V DTGIGI  +    IF+ F Q      R+Y GTGLGL++ +++  L
Sbjct: 753 TYIS-----LAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTAL 807

Query: 629 HGGSVTVTSKLNEGSRFKITIPCV 652
            GG ++++S+L EGS F +  P V
Sbjct: 808 LGGEISLSSRLGEGSTFILHFPAV 831


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  127 bits (318), Expect = 2e-31
 Identities = 84/256 (32%), Positives = 137/256 (53%), Gaps = 5/256 (1%)

Query: 402 EQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEI 461
           ++L  + K   +A++LK EFLA+ +HELRTPLN I+G +  + + +      ++ + +E 
Sbjct: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDM-ADSEAEKHEFVEE 236

Query: 462 VENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSE 521
              S               KIEAGR+ ++L     S ++  +  F    A  K ++ +  
Sbjct: 237 AYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLT 296

Query: 522 IIPNLPDVLV--DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLS 579
             PN   +LV  ++R L QV++N++ NAIKFT EGG  V    + +    E  Q P  L 
Sbjct: 297 A-PNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLK 355

Query: 580 FTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKL 639
            +V DTGIG+  ++ + +F+ FVQID + ++ Y GTGLGL + +K+VE  GG V   S +
Sbjct: 356 VSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFS-M 414

Query: 640 NEGSRFKITIPCVFQD 655
            EG    +T   + ++
Sbjct: 415 GEGLGSTVTFTVLLEE 430


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  124 bits (310), Expect = 1e-30
 Identities = 83/267 (31%), Positives = 143/267 (53%), Gaps = 11/267 (4%)

Query: 391 IADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGP 450
           + +  E  + +  L  + +I     + K  F+ANMSHELR+PLN+I+G  + +      P
Sbjct: 338 LIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLP 397

Query: 451 LNGKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQF 510
           +  +Q ++  I++ SG +            KIEAG+  L+ +   +  L++     +   
Sbjct: 398 M--EQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLK 455

Query: 511 AIQKQINLSSEIIPNLPD-VLVDKRRLCQVLINLLNNAIKFTPEGGKVVV-------QAD 562
           A  + I L      +LP  V  D+ +L Q+L+NLL+NAIKFT EG  V+        Q +
Sbjct: 456 AANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQE 515

Query: 563 LIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLV 622
           +I  +     ++   L FT+ DTG GI    L+++FE F Q +S  N + +GTGLGL++ 
Sbjct: 516 VINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQ-EGTGLGLAIT 574

Query: 623 KKIVELHGGSVTVTSKLNEGSRFKITI 649
           ++ ++L GG + V+S +++G+ F  +I
Sbjct: 575 RQFIKLMGGDINVSSVVDQGTTFSFSI 601


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score =  114 bits (286), Expect = 9e-28
 Identities = 83/264 (31%), Positives = 140/264 (53%), Gaps = 27/264 (10%)

Query: 393 DITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN 452
           D+TE ++ EE ++L+ +   + ++LK  F +  SHE RTPL++ L   + L+N     L+
Sbjct: 45  DVTERRRTEE-VRLALEREKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLD 103

Query: 453 -GKQVQSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQFA 511
             K+ ++L  ++NS ++            + EAG+++ + N   +  L        QQF 
Sbjct: 104 PDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLF-------QQFI 156

Query: 512 IQKQINLSSE----IIPNLPDV--LVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIK 565
            + Q+++S +     I +  D   LVD+R +  +L NLL+NAIK++P GG++ +   L  
Sbjct: 157 EEIQLSVSDQYYFDFICSAQDTKALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDS 216

Query: 566 EQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKI 625
           E          Q+ F V D GIGI  +    IFEPF +  +   R   GTGLGL + KK 
Sbjct: 217 E----------QIIFEVTDQGIGISPEDQKQIFEPFHRGKNV--RNITGTGLGLMVAKKC 264

Query: 626 VELHGGSVTVTSKLNEGSRFKITI 649
           V+LH GS+ + S +++G+   I +
Sbjct: 265 VDLHSGSILLKSAVDQGTTVTICL 288


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  107 bits (266), Expect = 2e-25
 Identities = 95/349 (27%), Positives = 157/349 (44%), Gaps = 24/349 (6%)

Query: 311  NLITWLGFEQPLEPADGDFFIHLGDRPMFWQAIE-----QSLED--PTMELSTELRLEAA 363
            N   W       E   G     + + P+ WQ I      ++LE   P +   T   +E  
Sbjct: 827  NFSNWYYINPSFESLTGYTPDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKK 886

Query: 364  NG-EIYHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFL 422
            +G +I+   +   +      A V + G   DIT+IK+AE +   S     +  + K +F+
Sbjct: 887  DGTQIWAQTVEFLVDDLSDTARVVVFGQ--DITDIKRAEIETLRSLVKERELNEAKSQFV 944

Query: 423  ANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHXXXXXXXXXXXXKI 482
              +SHE RTPL SI+G  E L          K+ Q +  ++NS +             + 
Sbjct: 945  DIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRY 1004

Query: 483  EAGRMDLDLNPTSVSALVNHSL-TFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLI 541
            +A +++++L   ++  L N  +  F      +    L+  + P+    LVD R L  +L 
Sbjct: 1005 DANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPD-EHSLVDVRLLRHILE 1063

Query: 542  NLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPF 601
            N+L+NAIK++  G  + +  D+ K++          L F V D GIGI       +FE F
Sbjct: 1064 NILSNAIKYSAPGSTITL--DISKDE--------EHLLFQVRDEGIGIPLQDQEKLFEAF 1113

Query: 602  VQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650
             +  +  +    GTGLGLS+VK+ VE  GG++ V S   +G+   I +P
Sbjct: 1114 HRASNVGD--IPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLP 1160


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 79.3 bits (194), Expect = 4e-17
 Identities = 66/254 (25%), Positives = 114/254 (44%), Gaps = 17/254 (6%)

Query: 397 IKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQV 456
           +++AEE  +L+  +      LK +F    SH+L+ PLN +   ++ L+ +    L+    
Sbjct: 509 LRQAEELAQLARNLERSNADLK-KFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAK 567

Query: 457 QSLEIVENSGRHXXXXXXXXXXXXKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQI 516
             ++                    K++     L    T V  +V+ +L  ++Q   +   
Sbjct: 568 DFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTF--TDVQEVVDKALANLKQRIEESGA 625

Query: 517 NLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPP 576
            +    + ++P V+ D+ +L QV  NL+ N IKF  +      ++  IK  G     +  
Sbjct: 626 EIE---VGSMPAVMADQIQLMQVFQNLIANGIKFAGD------KSPKIKIWGDRQEDA-- 674

Query: 577 QLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVT 636
              F V D GIGI+      IF  F ++ +     Y GTG+GL++ KKI+E H G + + 
Sbjct: 675 -WVFAVQDNGIGIDPQFFERIFVIFQRLHT--RDEYKGTGMGLAICKKIIEGHQGQIWLE 731

Query: 637 SKLNEGSRFKITIP 650
           S   EGS F  +IP
Sbjct: 732 SNPGEGSTFYFSIP 745


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,158
Number of Sequences: 78
Number of extensions: 3061
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 15
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 22
length of query: 806
length of database: 48,235
effective HSP length: 70
effective length of query: 736
effective length of database: 42,775
effective search space: 31482400
effective search space used: 31482400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000414 sll0649 
         (245 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000414 sll0649                                            466   e-134
SYNE-PCC-01-001437 slr0081                                            167   3e-44
SYNE-PCC-01-002033 slr0947                                            160   4e-42
SYNE-PCC-01-001461 slr0115                                            140   5e-36
SYNE-PCC-01-000242 sll0396                                            137   3e-35
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   124   4e-31
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   121   2e-30
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  116   6e-29
SYNE-PCC-01-002672 slr1837                                            115   1e-28
SYNE-PCC-01-000877 sll1330                                            109   1e-26
SYNE-PCC-01-000518 sll0789                                            107   4e-26
SYNE-PCC-01-002486 slr1584                                            106   8e-26
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   104   2e-25
SYNE-PCC-01-000523 sll0797                                            101   2e-24
SYNE-PCC-01-001306 sll1905                                             91   3e-21
SYNE-PCC-01-002086 slr1042                                             91   5e-21
SYNE-PCC-01-002731 slr1909                                             84   3e-19
SYNE-PCC-01-002489 slr1588                                             75   2e-16
SYNE-PCC-01-001133 sll1673                                             73   8e-16
SYNE-PCC-01-000800 sll1228                                             69   1e-14
SYNE-PCC-01-002635 slr1783                                             62   2e-12
SYNE-PCC-01-002788 slr1982                                             61   3e-12
SYNE-PCC-01-002618 slr1760                                             60   5e-12
SYNE-PCC-01-002221 slr1213                                             60   7e-12
SYNE-PCC-01-002617 slr1759                                             59   1e-11
SYNE-PCC-01-002873 slr2098                                             59   1e-11
SYNE-PCC-01-002879 slr2104                                             58   3e-11
SYNE-PCC-01-001132 sll1672                                             57   4e-11
SYNE-PCC-01-000608 sll0921                                             52   1e-09
SYNE-PCC-01-001160 sll1708                                             52   2e-09
SYNE-PCC-01-001575 slr0312                                             47   8e-08
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    47   8e-08
SYNE-PCC-01-001075 sll1592                                             44   6e-07
SYNE-PCC-01-002778 slr1969                                             40   7e-06

>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  466 bits (1198), Expect = e-134
 Identities = 230/245 (93%), Positives = 230/245 (93%)

Query: 1   MWGNRTEFIAMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIV 60
           MWGNRTEFIAMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIV
Sbjct: 1   MWGNRTEFIAMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIV 60

Query: 61  LDLMLPKLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
           LDLMLPKLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE
Sbjct: 61  LDLMLPKLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120

Query: 121 XXXXXXXXXXXXXXXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLAT 180
                          GQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLAT
Sbjct: 121 LVARVRALLRRQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLAT 180

Query: 181 FMSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK 240
           FMSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK
Sbjct: 181 FMSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK 240

Query: 241 FEDPD 245
           FEDPD
Sbjct: 241 FEDPD 245


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  167 bits (423), Expect = 3e-44
 Identities = 94/235 (40%), Positives = 132/235 (56%), Gaps = 13/235 (5%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQE-------QVPDLIVLDLMLP 66
           IL+VED+  I + I  +L+ E +     +DG   L + QE          DLI+LD+MLP
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 67  KLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXX 126
           +++GL+VC  +R   G  +  IL+++AKG E++++ GL  GADDY+ KPFS +E      
Sbjct: 93  QVNGLDVCRSLRF--GGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150

Query: 127 XXXXXXXXXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPG 186
                    G  +    +      DL  +        R EE+ L   EF LL  FMSYP 
Sbjct: 151 AMIRRQGLAGNNIAPFRKFR----DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPR 206

Query: 187 RVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241
           RVW+R QLIE +WG DF GD + VD HIR LR+K+E DP+ P ++ TV G GY+F
Sbjct: 207 RVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  160 bits (405), Expect = 4e-42
 Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 12/232 (5%)

Query: 16  IVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEVCT 75
           +V+D+  I +++   L    +  +   DGE  +  F E  PDL+VLD+M+PKLDG  VC 
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 76  RIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXXXX 135
            +R++    D  I+MLTA G+  DRI GL  GADDY+VKPFSP+E               
Sbjct: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 136 GQ---PVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192
           G    P   + +    ++D ++ Q   Y+GD  E + LTG+EF+LL   +S  G  ++R+
Sbjct: 118 GMPGIPSSGVLQIATIRIDTNKRQV--YKGD--ERIRLTGMEFSLLELLVSRSGEPFSRS 173

Query: 193 QLIEKLWG--NDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242
           ++++++WG   +   D RVVD HI RLR K+E DP+NP  I T  G GY F+
Sbjct: 174 EILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  140 bits (352), Expect = 5e-36
 Identities = 84/234 (35%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70
           MP ILI++DD  I+ L+   LE   +      DG  G  +  +  PDLI+LDLMLPK+DG
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXX 130
             VC R+R+   + D  +LMLTA G+  D+I G  +GADDYL KPF   E          
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 131 XXXXXGQPV--GQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRV 188
                 Q     +I       +  ++ +A  +     + ++LT LEF LL   +   G+ 
Sbjct: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWF----GKSIKLTHLEFELLHCLLQRHGQT 176

Query: 189 WNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242
            + + ++ ++WG +   D   +  HIR LR K+EP+P  P FIKTV G GY  E
Sbjct: 177 VSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  137 bits (346), Expect = 3e-35
 Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 14/232 (6%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           +L+VE+++++A+ +   L+ E +   V  DG  G    QE  PDLI+++  LP + GLE+
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXX 133
           C R+R+  GS+ P I+++TAK +  +R++GL  GADDY+VKPF+  E             
Sbjct: 65  CRRLREM-GSRIP-IILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTH 122

Query: 134 XXGQPVGQIYRTNHFQVDLDQHQASR--YQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191
                V Q         DL  ++++R   +GDR   ++LT  EF LL   +S+  +V  R
Sbjct: 123 TTSDEVLQF-------ADLRFNRSTREIQRGDRL--IDLTAKEFELLDYLLSHARQVLTR 173

Query: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFED 243
            Q++E++WG DF GD  +++ +IR LR K+E     P  I+TV G+GY   D
Sbjct: 174 EQILERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVLRD 224


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  124 bits (310), Expect = 4e-31
 Identities = 81/228 (35%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           ILIVED+  I ++I   L ++ +  I  +D +T +   +E  P LI+LD MLP   G++ 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXX 133
              I++Q       I+MLTAK  E D I  L+ GADDY+ KPFSP+              
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 134 XXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193
              +   Q  + +   +D +  Q   +Q   Q+E+ L+  EF LL  FM +P +V++R Q
Sbjct: 124 ---EQQSQFIQIDELSID-ENAQRVFFQ---QQEINLSSTEFKLLHFFMRHPEKVYSREQ 176

Query: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241
           L+ ++W ND   + R VD++IRRLR+ + P      +I+TV G GY+F
Sbjct: 177 LLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCE-HYIQTVRGSGYRF 223


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  121 bits (304), Expect = 2e-30
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 12  PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           P IL+VED+      ++   E E +      +G     I      +L+V+D+ LP  +GL
Sbjct: 4   PKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGL 63

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXX 131
            +   +R++       ++ LT +  E+D+I+GL  GADDYL KPF+PRE           
Sbjct: 64  LLARELREELSLP---LIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120

Query: 132 XXXXGQPVG----QIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGR 187
                +       + YR N +++DL+ H     +G   +E +L   EF  +  F   PG+
Sbjct: 121 AMPHQEKENTFGREFYRFNGWKLDLNSHSLITPEG---QEFKLPRSEFRAMLHFCENPGK 177

Query: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241
           +  R +L++K+ G +    +R VD  IRR+RK  E  P  P  I T+ G GY+F
Sbjct: 178 LQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  116 bits (291), Expect = 6e-29
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70
           M  +L+V+DD E+ +L+   LE E F     N+G   L+   E    L++LD+M+PKL+G
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNG 59

Query: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXX 130
           +E    IR+   S  P ++MLTA+GE+IDR++GL  GADD L KPF+ RE          
Sbjct: 60  IETLKEIRKV--SNVP-VMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116

Query: 131 XXXXXGQPVGQIYRTNHFQVDLD-QHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVW 189
                   +  +   +   + L   H  + Y    +E L LT  EF +L   +   G V 
Sbjct: 117 RSASPSNNISNVEILSFDGITLHFSHGIATY---NEENLNLTDYEFKILCLLLKSKGNVV 173

Query: 190 NRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGY 239
           +R +L  ++        +R +D HI  LR+K+      P++ KT+ G GY
Sbjct: 174 SREELSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  115 bits (289), Expect = 1e-28
 Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 14/239 (5%)

Query: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70
           M NIL+V+D+  + + + + L  +  T  V + G+TGL +      DL++LD MLP++ G
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXX------- 123
           LE+C +IR   G   P +L LTAK    DR+ GL  G DDYL+KPF  RE          
Sbjct: 61  LEICRQIRIL-GHSTP-VLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLR 118

Query: 124 XXXXXXXXXXXXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMS 183
                       G     +   N+  +D+  +Q +  QG R   + L+  E  LL  F+ 
Sbjct: 119 RQSHGETITETLGAVKNNLLSVNNVSLDV-ANQVAYCQGQR---IALSEKEVALLTLFLQ 174

Query: 184 YPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242
            PG++ +  ++   LW  +      V+   +R LR+KIE  P  P  I +V G GY FE
Sbjct: 175 APGQILSHEEIYSHLWPGESPPSSNVLAALVRLLRRKIE-QPNAPRLINSVYGKGYCFE 232


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  109 bits (272), Expect = 1e-26
 Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           I +VE +  +  L+   L++  +     +      + F  Q+P L V+D  L   DG+E+
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXX 133
           C  + QQ  S    I +L+AK  E D + GL  GADDYL KPF  +E             
Sbjct: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122

Query: 134 XXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193
               P+   Y     ++DL Q +   YQG+    ++LT  EF+LL       G   +RT+
Sbjct: 123 TVAAPLLLDYGV--LKIDLVQRRVE-YQGNF---VDLTPQEFSLLYVLTQAEGSALSRTE 176

Query: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241
           L+ + W  +   + R +DTH+  LRKKIE DP  P+ I+TV  +GY+F
Sbjct: 177 LLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  107 bits (267), Expect = 4e-26
 Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD--LIVLDLMLPKLDGL 71
           +L+VED+ ++   + + L RE +      DG        +   +  L + D M+P L GL
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXX 131
           E+C ++R Q  S    ILMLTAK +  DR+ GL  GADDYL+KPF   E           
Sbjct: 63  ELCQKLRGQRSSLP--ILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 132 XXXXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191
                QP  Q  +   + +D   +         Q  + LT  EF LL  FM +P ++ + 
Sbjct: 121 SPEL-QP--QQLQVGQWWLD---YGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSS 174

Query: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242
            Q+  +LW         VV   +R LR+K+E + ++   I+TV GLGY+F+
Sbjct: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRFQ 224


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  106 bits (264), Expect = 8e-26
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           IL+VEDD  +A+ + E L  + +T  +  D             DL++LD+MLP+LDG+ +
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXX 133
           C + R    S    ILM+TA+    D+I GL  GADDY+VKP    E             
Sbjct: 63  CQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 134 XXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193
              QPV         ++D   ++ S       E L LT  E+++L   +    RV +R+ 
Sbjct: 121 ATCQPV---LEWGPIRLDPSTYEVSY----DNEVLSLTRKEYSILELLLRNGRRVLSRSM 173

Query: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK 240
           +I+ +W  +   +E  V  H+R LR+K++    +   I+TV G+GY+
Sbjct: 174 IIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  104 bits (260), Expect = 2e-25
 Identities = 79/226 (34%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           IL++EDD  I   ++  L +  F      DG+TG+        D +VLDL LPKLDGLEV
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXXXX 133
             + R     +D  +L+LTA+    +R+ GL +GADDYL KPF+  E             
Sbjct: 63  LQQWRS--NHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 134 XXGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193
                V          V LDQ+Q S +  +  + + LT  E+ LL  FM    RV +R+ 
Sbjct: 121 GYHHSV-----IEQAGVKLDQNQRSVWLNN--QPISLTSREYKLLELFMLNKDRVLSRSS 173

Query: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGY 239
           + EKL   D       +D HI  LR+K+        FI+TV G+GY
Sbjct: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGY 214


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  101 bits (252), Expect = 2e-24
 Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD--LIVLDLMLPKLDGL 71
           IL+VED+ ++   I++ L  E++      DG       + Q  +  L ++D +LP L GL
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREXXXXXXXXXXX 131
           E+C ++R Q  S    +LMLTA GE  +R+ GL  GADDYL KPF   E           
Sbjct: 63  ELCQKLRTQGNSLP--VLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR 120

Query: 132 XXXXGQPVGQIYRTNHFQVDLDQHQASRYQGD----RQEELELTGLEFNLLATFMSYPGR 187
                QP  QI    +F +D   +  S    +     ++E+ LT  EF +    M  P R
Sbjct: 121 SPQF-QP--QILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPER 177

Query: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241
           + + +++ ++LW  D      VV   +R +R+K+      P  IKTV G GY+F
Sbjct: 178 IISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNC-PCPIKTVPGQGYRF 230


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 91.3 bits (225), Expect = 3e-21
 Identities = 46/107 (42%), Positives = 67/107 (62%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           IL+V+D +E   +I E LE E ++      G   L+   +  PDLI+LDLM+P +DGLEV
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
           C R++Q P ++D  ++ LTA  E+ D +   + GA DY+ KPFSP E
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPE 126



 Score = 57.0 bits (136), Expect = 6e-11
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           IL+ ED+    Q+ +  L++  +   V N+G+  L    +   D++++D+ +P++DGL  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 74  CTRIRQQPG-SKDPYILMLTAKGEEIDRIIGLSTGADDYLVKP 115
              IR+  G S+ P+I+ +TA   E DR   L++G +DY+ KP
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 90.5 bits (223), Expect = 5e-21
 Identities = 43/110 (39%), Positives = 66/110 (60%)

Query: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70
           M  +L+VED     ++I   L+   +   +  DG   L   Q   PDL+VLD+++P+++G
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
            EVC RI+  P +K+  ++M ++KGEE DR  G+  GAD Y+ KPF P E
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPME 136


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 84.3 bits (207), Expect = 3e-19
 Identities = 38/108 (35%), Positives = 65/108 (60%)

Query: 13  NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72
           ++L+V+DD  +  L+++ LE + +      +G   L +    VPD+IV D+M+P++DG  
Sbjct: 9   HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68

Query: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
              ++RQ P      ++ L+AKG+  +R+ GL+ GAD Y+ KPF P E
Sbjct: 69  FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEE 116


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 75.5 bits (184), Expect = 2e-16
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQ--EQVPDLIVLDLMLPKL 68
           M  IL+VED+  I +LI ETL  E +  +   +G   L +    E +PDLI+ D+M+P++
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 69  DGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
           DG  + T +++   +     + LTA G   D   G+++GADDYL+KPF   +
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQED 112


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 73.2 bits (178), Expect = 8e-16
 Identities = 37/108 (34%), Positives = 60/108 (55%)

Query: 13  NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72
           NIL+V+D     QL+ + L    +T      G+  LR  Q + PDLI+LD+ +P +DG +
Sbjct: 10  NILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQ 69

Query: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
           VC  I+++   +D  I+ ++A G+  D++     G  DY+ KPF   E
Sbjct: 70  VCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEE 117


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 36/107 (33%), Positives = 57/107 (53%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           +L+V+D  E   L+R+ L    F      +GE  + +++   P +I++D+ +P LDG   
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
             +I+  P  +   I+ LTA   E +R   LS G DD+L KPF P E
Sbjct: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEE 526


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 13  NILIVEDDQEIAQLIRETLERE-QFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           ++L+V+D+  + + ++  LE    F   +  +        Q  +P L++ D+M+P++DG 
Sbjct: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
           +   ++R+    +   ++ LTA+G   DRI G  TG D +L KPF P E
Sbjct: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDE 165


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 32/106 (30%), Positives = 55/106 (51%)

Query: 10  AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69
           +M  +L+VED++    ++   L R+ +  ++  DGE  + +   + P LI++D+ LP +D
Sbjct: 3   SMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIID 62

Query: 70  GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKP 115
           G     +I+  P      I+ LTA     DR   ++ G DDY  KP
Sbjct: 63  GWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 60.5 bits (145), Expect = 5e-12
 Identities = 32/106 (30%), Positives = 54/106 (50%)

Query: 10  AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69
           A   IL+V+DD  +   +R  L++E     +  +GE  L  F E  P++++LD ++P +D
Sbjct: 10  AAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMD 69

Query: 70  GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKP 115
           G   C  + +   +  P +LM+T   +E         GA DY+ KP
Sbjct: 70  GFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKP 115


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 60.1 bits (144), Expect = 7e-12
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFT-CIVTNDGETGLRIFQEQVPDLIVLDLMLP-KLDGL 71
           ILIVED++ +AQ I + L+ + +  C++ +DG T L+   E  PDL++LD+ +  ++DG+
Sbjct: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPF 116
           EV  RI+        Y L   + GE ++R     T    Y++KPF
Sbjct: 65  EVAERIKSLYSIPIVY-LTAFSDGETLER--AQKTNPQGYVIKPF 106


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 4    NRTEFIAMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDL 63
            N T       IL+ ED+    ++  + L    +   + N+G+  +   +++  DL+++D+
Sbjct: 1182 NATSLQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDM 1241

Query: 64   MLPKLDGLEVCTRIRQQ-PGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFS 117
             +P +DG+  C  IRQ  P  + P I+ +TA     DR   L  G D Y+ KP S
Sbjct: 1242 QMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPIS 1296



 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 14   ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDL--IVLDLMLPKLDGL 71
            +LIV+D++   +++++  +     C     GE+ L  F  + PDL   +LDL +P +DG+
Sbjct: 1036 VLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFA-RCPDLDAAILDLQMPNMDGI 1094

Query: 72   EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLV 113
             +   +RQ    KD  I++L++         GL  GAD+  V
Sbjct: 1095 TLAHHLRQFAQGKDLPIILLSS---------GLVAGADELSV 1127


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD-----LIVLDLMLPKL 68
           +L+V+D+     ++++ LE+ +F       G   L    E   +     ++ +D  +P +
Sbjct: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832

Query: 69  DGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSP 118
           DGLEV  R++    +  P I ++TA G E   +   S G DD LVKP SP
Sbjct: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISP 882



 Score = 57.0 bits (136), Expect = 6e-11
 Identities = 34/107 (31%), Positives = 53/107 (49%)

Query: 14   ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
            IL+VED++   ++  E L    F   V  +G   L         L+++D+ +P++DG+E 
Sbjct: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986

Query: 74   CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
               IRQ P      I+ +TA   + DR   L  G +D+L KP  P E
Sbjct: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEE 1033


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%)

Query: 13  NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72
           +IL+VED++   +   + L  +     V N+G+  L +      D I++D+ +P L+G +
Sbjct: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778

Query: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSP 118
               IRQQ   ++  I+ +TA     D+   L  G +D+L KP  P
Sbjct: 779 ATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP 824


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 33/103 (32%), Positives = 54/103 (52%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
           IL+V+D     QL+ + L    F     ++G+  + +++   P LI +D+ +P +DG E 
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691

Query: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPF 116
              I+ Q       ++ LTA   E ++ I LS G DD+L KPF
Sbjct: 692 TKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 14  ILIVEDDQEIAQLIRETLERE-QFTCI-VTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           I ++ED+  I Q +++ L  E  F  +    +G  GL + Q+  PD++++D+ LP ++G+
Sbjct: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGI 65

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVK 114
           +V  ++++ P +    +++LT   +E   +   S GAD Y +K
Sbjct: 66  DVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 14  ILIVEDDQEIAQLIRETL-EREQFTCIVTNDGETGLRIFQEQV--PDLIVLDLMLPKLDG 70
           ILIVEDD  +   + + L   E+F  I   D   G  + Q  V  PDLIV+D+ LP LDG
Sbjct: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGA-VQQAAVLNPDLIVMDIGLPGLDG 77

Query: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVK 114
           +E   +I+Q   S   +I++LT+     + I  LS+GAD Y VK
Sbjct: 78  IEATKQIKQT--SPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 46.6 bits (109), Expect = 8e-08
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTN--DGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           +LI +D     Q +   + R+    ++    +GE  + +F+E  PD+ ++DL +P+++G+
Sbjct: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGV 68

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRE 120
              + I      K   I++LT    + D   GL  GA  YL+K   P E
Sbjct: 69  AAISAICAI--VKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDE 115


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 46.6 bits (109), Expect = 8e-08
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTN--DGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           +L+++D   + + I++ +E +    +V +   G  G+ +  +  PD+I+LDL +  L GL
Sbjct: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSP 118
           +    +R +    D  IL+LT    + D    +  GAD YL+K   P
Sbjct: 67  DTLKGLRAE--GVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEP 111


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 43.5 bits (101), Expect = 6e-07
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 14  ILIVEDDQEIAQLIRETLEREQFTCIV--TNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71
           IL+VEDD+     +   L +E    +     DGET +    +Q+ D+++LD+ LP + G+
Sbjct: 10  ILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGI 69

Query: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVK 114
           E C +I++        IL   ++   I+R+I     A  Y VK
Sbjct: 70  EACHQIKKIHPQLPVLILTSHSQPALINRLI--EAQAQGYCVK 110


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 40.0 bits (92), Expect = 7e-06
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 10  AMP---NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLP 66
           AMP   +++++E D+EIA LI E L    +  I   D    L+  +   P LI++D    
Sbjct: 625 AMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDF- 683

Query: 67  KLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSP 118
            +D  EV   I++        + +L+      +       G DDYL+KP  P
Sbjct: 684 -VDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQP 734


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,988
Number of Sequences: 78
Number of extensions: 1027
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 38
length of query: 245
length of database: 48,235
effective HSP length: 60
effective length of query: 185
effective length of database: 43,555
effective search space:  8057675
effective search space used:  8057675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000511 sll0782 
         (369 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000511 sll0782                                            724   0.0  
SYNE-PCC-01-001575 slr0312                                             58   4e-11
SYNE-PCC-01-000608 sll0921                                             53   2e-09
SYNE-PCC-01-001160 sll1708                                             51   7e-09
SYNE-PCC-01-001075 sll1592                                             51   7e-09
SYNE-PCC-01-001039 sll1544                                             49   2e-08
SYNE-PCC-01-002951 ssl0564                                             48   4e-08
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    45   3e-07
SYNE-PCC-01-002731 slr1909                                             45   5e-07

>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score =  724 bits (1868), Expect = 0.0
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MLDSAQLIFDLQKVNTTSKRISGCLDTTAITKEITEALIHDFHCVFARIWLTEPDGASLK 60
           MLDSAQLIFDLQKVNTTSKRISGCLDTTAITKEITEALIHDFHCVFARIWLTEPDGASLK
Sbjct: 1   MLDSAQLIFDLQKVNTTSKRISGCLDTTAITKEITEALIHDFHCVFARIWLTEPDGASLK 60

Query: 61  LVASSGLHTSTNGSFARVPMGAYKVGKIAQSCIPFLSNHLANETWVKDRDWAIANNIRGF 120
           LVASSGLHTSTNGSFARVPMGAYKVGKIAQSCIPFLSNHLANETWVKDRDWAIANNIRGF
Sbjct: 61  LVASSGLHTSTNGSFARVPMGAYKVGKIAQSCIPFLSNHLANETWVKDRDWAIANNIRGF 120

Query: 121 AGYPLVGHDRVIGVLAVFSEAPFVAEFLEVLQVLCMAVAIAIDAVRQLQSETNTINTTQF 180
           AGYPLVGHDRVIGVLAVFSEAPFVAEFLEVLQVLCMAVAIAIDAVRQLQSETNTINTTQF
Sbjct: 121 AGYPLVGHDRVIGVLAVFSEAPFVAEFLEVLQVLCMAVAIAIDAVRQLQSETNTINTTQF 180

Query: 181 LDDQIPLPDVLARLLSQTKLTLIGTEKKLSPTLAYLLIRTTEIFNRLSCNYCRLIYGEIS 240
           LDDQIPLPDVLARLLSQTKLTLIGTEKKLSPTLAYLLIRTTEIFNRLSCNYCRLIYGEIS
Sbjct: 181 LDDQIPLPDVLARLLSQTKLTLIGTEKKLSPTLAYLLIRTTEIFNRLSCNYCRLIYGEIS 240

Query: 241 VTIEAIVEASVSEAFNTDGRSPFKEIEFLAHHVGGEFRSQSSVNQSILQISLQLPYDGFQ 300
           VTIEAIVEASVSEAFNTDGRSPFKEIEFLAHHVGGEFRSQSSVNQSILQISLQLPYDGFQ
Sbjct: 241 VTIEAIVEASVSEAFNTDGRSPFKEIEFLAHHVGGEFRSQSSVNQSILQISLQLPYDGFQ 300

Query: 301 NIKLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAI 360
           NIKLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAI
Sbjct: 301 NIKLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAI 360

Query: 361 YQATVQGFI 369
           YQATVQGFI
Sbjct: 361 YQATVQGFI 369


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 58.2 bits (139), Expect = 4e-11
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 303 KLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQ 362
           +L+   LSERE E++  LAQG+ + DIA  L I E TVK HVN  L+KL+  +R QA+  
Sbjct: 141 RLSNPELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIV 200

Query: 363 ATVQGFI 369
           A  +G +
Sbjct: 201 AVKRGIV 207


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368
           L+ERE E++ L+  G  + DIAE+L+I+  TVK HV   L+KL A +R QA  +A   G 
Sbjct: 161 LTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGL 220

Query: 369 I 369
           +
Sbjct: 221 V 221


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 50.8 bits (120), Expect = 7e-09
 Identities = 23/61 (37%), Positives = 41/61 (67%)

Query: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368
           LSERE +++ L+ +G  +++IA+ L++S +T+K HV G ++KL+  +R QA   A   G 
Sbjct: 166 LSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGL 225

Query: 369 I 369
           +
Sbjct: 226 V 226


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 50.8 bits (120), Expect = 7e-09
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 28/160 (17%)

Query: 207 KKLSPTLAYLLIRTTE---IFNRL----SCNYCRLIYGEISVTIEAIVEASVSEAFNTDG 259
           KK+ P L  L++ +     + NRL    +  YC  + G  + T+   + +  + AF  D 
Sbjct: 76  KKIHPQLPVLILTSHSQPALINRLIEAQAQGYC--VKGVAAETLVLAIRSVAAGAFWWDA 133

Query: 260 RSPFKEIEFLAHHVGGEFRSQSSVNQSILQISLQLPYDGFQNIKLNKHLLSEREKEIVSL 319
            +  +EI+    H        SS   ++L ++     DG       ++ L++RE EI+SL
Sbjct: 134 IAS-QEIQTAFQH--------SSSTGAVLPLA---DADG-------ENPLTKRELEILSL 174

Query: 320 LAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQA 359
           +A+G  +++IA+EL+I+  TV+ HV+  L KL  ++R QA
Sbjct: 175 VAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQA 214


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 303 KLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQ 362
           K  K  L++RE  I+ L+A+G  + +I +ELH++ STV+ +V   + KLNA++R  A   
Sbjct: 161 KSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIA 220

Query: 363 ATVQGFI 369
              +G++
Sbjct: 221 GLREGYL 227


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQG 367
           LS+RE EI+ L+A GL +++++E L IS+ TV  HV+  L K N +NR + +  A   G
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQA 359
           L++RE  ++  +A GL ++ IA +L ISE TVK H+   L KLN  +R  A
Sbjct: 149 LTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAA 199


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 44.7 bits (104), Expect = 5e-07
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNR 356
           L+  E +++ L+AQGL +R+IA+ L +S+ TV+ HV+  L+K    NR
Sbjct: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNR 200


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,491
Number of Sequences: 78
Number of extensions: 1257
Number of successful extensions: 15
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 369
length of database: 48,235
effective HSP length: 64
effective length of query: 305
effective length of database: 43,243
effective search space: 13189115
effective search space used: 13189115
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 93 (40.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000518 sll0789 
         (232 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000518 sll0789                                            445   e-128
SYNE-PCC-01-000523 sll0797                                            239   7e-66
SYNE-PCC-01-002672 slr1837                                            148   1e-38
SYNE-PCC-01-002486 slr1584                                            146   5e-38
SYNE-PCC-01-000242 sll0396                                            144   2e-37
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   124   3e-31
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   120   3e-30
SYNE-PCC-01-001437 slr0081                                            117   2e-29
SYNE-PCC-01-000414 sll0649                                            107   3e-26
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   100   3e-24
SYNE-PCC-01-002033 slr0947                                             99   1e-23
SYNE-PCC-01-001461 slr0115                                             99   2e-23
SYNE-PCC-01-000877 sll1330                                             79   1e-17
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   79   2e-17
SYNE-PCC-01-002635 slr1783                                             64   4e-13
SYNE-PCC-01-002489 slr1588                                             59   1e-11
SYNE-PCC-01-001306 sll1905                                             58   3e-11
SYNE-PCC-01-002731 slr1909                                             56   1e-10
SYNE-PCC-01-000800 sll1228                                             51   4e-09
SYNE-PCC-01-001075 sll1592                                             50   5e-09
SYNE-PCC-01-002873 slr2098                                             49   1e-08
SYNE-PCC-01-002086 slr1042                                             49   1e-08
SYNE-PCC-01-001160 sll1708                                             48   2e-08
SYNE-PCC-01-001133 sll1673                                             48   3e-08
SYNE-PCC-01-002618 slr1760                                             45   2e-07
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    44   5e-07
SYNE-PCC-01-002617 slr1759                                             43   8e-07
SYNE-PCC-01-002879 slr2104                                             43   1e-06
SYNE-PCC-01-002788 slr1982                                             42   2e-06

>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  445 bits (1144), Expect = e-128
 Identities = 220/232 (94%), Positives = 220/232 (94%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
           MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXX 120
           GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAE           
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 121 XPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180
            PELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ
Sbjct: 121 SPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 181 LWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPHPTHAEQ 232
           LWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPHPTHAEQ
Sbjct: 181 LWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPHPTHAEQ 232


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  239 bits (609), Expect = 7e-66
 Identities = 126/234 (53%), Positives = 158/234 (67%), Gaps = 7/234 (2%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
           MR+LLVEDE DLGMA++K L  E YVVDWV DG+ AW YL+  W  YTLAI DW++PGLS
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60

Query: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXX 120
           GLELCQKLR Q +SLP+LMLTA  +  +RVEGLDAGADDYL KPF MAE           
Sbjct: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR 120

Query: 121 XPELQPQQLQVGQWWLDYG----TFAVVTP---EQARITLTAKEFQLLEYFMKHPQQILS 173
            P+ QPQ L +G + LD      +  +  P   E+  I LT +EFQ+ +Y M++P++I+S
Sbjct: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180

Query: 174 SEQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPHP 227
             +I+ QLW L  E  SNVVAAQ+RL+RRKL + +    I+TV G GYRF   P
Sbjct: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFTLSP 234


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  148 bits (374), Expect = 1e-38
 Identities = 94/232 (40%), Positives = 125/232 (53%), Gaps = 13/232 (5%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +LLV+DE  L   L KAL  + + +D    G    +    G   Y L I DWM+P +SGL
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAG--QYDLLILDWMLPQVSGL 61

Query: 63  ELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAE----------XXX 112
           E+C+++R    S P+L LTAKD + DRV GLDAG DDYLIKPF + E             
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 113 XXXXXXXXXPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQIL 172
                      ++   L V    LD     V   +  RI L+ KE  LL  F++ P QIL
Sbjct: 122 HGETITETLGAVKNNLLSVNNVSLDVAN-QVAYCQGQRIALSEKEVALLTLFLQAPGQIL 180

Query: 173 SSEQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQ 224
           S E+I + LW   +  +SNV+AA VRLLRRK+E+ +   LI +VYG GY F+
Sbjct: 181 SHEEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGYCFE 232


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  146 bits (369), Expect = 5e-38
 Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
           MR+LLVED+  L   L +AL  + Y VD   D +LAW Y  +  + Y L I D M+P L 
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASR--LEYDLVILDVMLPELD 58

Query: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXX 120
           G+ LCQK R     +PILM+TA+D I D++ GLDAGADDY++KP  + E           
Sbjct: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118

Query: 121 XPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180
                   L+ G   LD  T+ V    +  ++LT KE+ +LE  +++ +++LS   I + 
Sbjct: 119 GCATCQPVLEWGPIRLDPSTYEVSYDNEV-LSLTRKEYSILELLLRNGRRVLSRSMIIDS 177

Query: 181 LWALSAESTSNVVAAQVRLLRRKLEEYS-HGNLIETVYGLGYR 222
           +W L +    + V   VR LR+KL+      + IETV+G+GYR
Sbjct: 178 IWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  144 bits (363), Expect = 2e-37
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 3/220 (1%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           R+L+VE+E  L   +E  L+ E Y V   +DG   ++   +      L I +  +PG+SG
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQE--FPPDLIIVNGALPGMSG 61

Query: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXXX 121
           LELC++LR   S +PI+++TAKD + +RV GLDAGADDY++KPF   E            
Sbjct: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121

Query: 122 PELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQL 181
                + LQ      +  T  +   ++  I LTAKEF+LL+Y + H +Q+L+ EQI  ++
Sbjct: 122 HTTSDEVLQFADLRFNRSTREIQRGDRL-IDLTAKEFELLDYLLSHARQVLTREQILERV 180

Query: 182 WALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGY 221
           W       SN++   +R LR KLE      LI+TV G+GY
Sbjct: 181 WGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  124 bits (311), Expect = 3e-31
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           ++L+VEDE  +   +   L ++ Y V    D   A + + +   N  L + DWM+PG SG
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE---NPKLILLDWMLPGRSG 60

Query: 62  LELCQKLRGQRS--SLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXX 119
           ++  Q ++ Q S  ++PI+MLTAK    D +  L+AGADDY+ KPF              
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 XXPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKN 179
              E Q Q +Q+ +  +D     V   +Q  I L++ EF+LL +FM+HP+++ S EQ+ N
Sbjct: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQ-EINLSSTEFKLLHFFMRHPEKVYSREQLLN 179

Query: 180 QLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPH 226
           ++W    E     V + +R LRR L  +   + I+TV G GYRF  +
Sbjct: 180 RIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSSY 226


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  120 bits (302), Expect = 3e-30
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 7/221 (3%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
           MR+LL+ED+  +G  L+  L +  + VDW  DG    + L      Y   + D  +P L 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSA--PYDAVVLDLTLPKLD 58

Query: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXX 120
           GLE+ Q+ R     +P+L+LTA+D + +RV+GL +GADDYL KPF +AE           
Sbjct: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118

Query: 121 XPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180
                   ++     LD    +V    Q  I+LT++E++LLE FM +  ++LS   I+ +
Sbjct: 119 RYGYHHSVIEQAGVKLDQNQRSVWLNNQP-ISLTSREYKLLELFMLNKDRVLSRSSIEEK 177

Query: 181 LWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGY 221
           L +   E +S  +   +  LR+KL +      I TV+G+GY
Sbjct: 178 LSSWDEEISSGALDVHIYNLRQKLGK----QFIRTVHGVGY 214


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  117 bits (294), Expect = 2e-29
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 22/237 (9%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYL-----DQGWVNYTLAIFDWMV 56
           R+L+VEDE  +   +  +L+ E Y V  V DG  A + L     D G     L I D M+
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 57  PGLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXX 116
           P ++GL++C+ LR    + PIL+++AK    ++V GL+ GADDY+ KPF + E       
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 117 XXXXXPELQPQQLQVGQWWLDYGTF--AVVTPEQAR-------ITLTAKEFQLLEYFMKH 167
                  +  +Q   G     +  F   V+ P++ R       ++L  KEF+LLE FM +
Sbjct: 152 -------MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSY 204

Query: 168 PQQILSSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRF 223
           P+++ S EQ+   +W +     S  V   +R LR KLE + S    + TV G GYRF
Sbjct: 205 PRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  107 bits (267), Expect = 3e-26
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 25/238 (10%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +L+VED+ ++   + + L RE +      DG        +   +  L + D M+P L GL
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD--LIVLDLMLPKLDGL 71

Query: 63  ELCQKLRGQRSSLP--ILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXX 120
           E+C ++R Q  S    ILMLTAK +  DR+ GL  GADDYL+KPF   E           
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRA---- 127

Query: 121 XPELQPQQLQVGQ----------WWLD---YGTFAVVTPEQARITLTAKEFQLLEYFMKH 167
              L  +QL+ GQ          + +D   +         Q  + LT  EF LL  FM +
Sbjct: 128 ---LLRRQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSY 184

Query: 168 PQQILSSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRFQ 224
           P ++ +  Q+  +LW         VV   +R LR+K+E + ++   I+TV GLGY+F+
Sbjct: 185 PGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  100 bits (250), Expect = 3e-24
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 11/230 (4%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           ++L+VEDE      L+     E Y V   ++G      L    +N  L + D  +PG +G
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNIN--LVVMDINLPGKNG 62

Query: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXXX 121
           L L ++LR +  SLP++ LT +D   D++ GL+ GADDYL KPF   E            
Sbjct: 63  LLLARELR-EELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121

Query: 122 PELQPQQLQVGQ-------WWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSS 174
              Q ++   G+       W LD  + +++TPE     L   EF+ + +F ++P ++ + 
Sbjct: 122 MPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTR 181

Query: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSH-GNLIETVYGLGYRF 223
           E++  ++     +     V   +R +R+  E++ +  N+I T++G GYRF
Sbjct: 182 EELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 99.0 bits (245), Expect = 1e-23
 Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 13/229 (5%)

Query: 5   LVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGLEL 64
           +V+DE  +   LE  L    Y V    DG  A +   +   +  L + D M+P L G  +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHES--DPDLVVLDVMMPKLDGYGV 58

Query: 65  CQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXXXPE- 123
           CQ+LR + S +PI+MLTA   +ADR+ GL+ GADDY++KPF   E             + 
Sbjct: 59  CQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 124 -----LQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIK 178
                     LQ+    +D     V   ++ RI LT  EF LLE  +    +  S  +I 
Sbjct: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDE-RIRLTGMEFSLLELLVSRSGEPFSRSEIL 176

Query: 179 NQLWALSAES--TSNVVAAQVRLLRRKLEE-YSHGNLIETVYGLGYRFQ 224
            ++W  + E    + VV   +  LR KLEE  S+  LI T  G GY FQ
Sbjct: 177 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 98.6 bits (244), Expect = 2e-23
 Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 15/230 (6%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           R+L+++D+P +   +   L    Y V    DG    +   Q  +   L + D M+P + G
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQ--LQPDLIMLDLMLPKVDG 60

Query: 62  LELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXX 119
             +CQ+LR     + +P+LMLTA  QI D+++G D+GADDYL KPF + E          
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 120 XXPELQPQQLQVGQWWLDYGTFAVVTPEQ-------ARITLTAKEFQLLEYFMKHPQQIL 172
               + PQ  +  +  L+ G   +V PE+         I LT  EF+LL   ++   Q +
Sbjct: 121 RTDRI-PQAAKHSE-ILNQGPLTLV-PERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTV 177

Query: 173 SSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGY 221
           S   I  ++W    +     +   +R LR KLE        I+TVYG GY
Sbjct: 178 SPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 79.3 bits (194), Expect = 1e-17
 Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 21/228 (9%)

Query: 5   LVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNY--TLAIFDWMVPGLSGL 62
           +VE  P L   L   L++  Y+V      + A     Q + N   TLA+ D  +    G+
Sbjct: 8   VVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQA----RQAFNNQLPTLAVIDSDLTDGDGI 63

Query: 63  ELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXXXP 122
           ELC+ L  Q  S+ I +L+AKD   D V GL AGADDYL KPFGM E             
Sbjct: 64  ELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122

Query: 123 ELQPQQLQVGQWWLDYGTFAV------VTPEQARITLTAKEFQLLEYFMKHPQQILSSEQ 176
            +    L      LDYG   +      V  +   + LT +EF LL    +     LS  +
Sbjct: 123 TVAAPLL------LDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTE 176

Query: 177 IKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRF 223
           +  + W   A      +   V  LR+K+E +    +LI+TV  +GYRF
Sbjct: 177 LLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 78.6 bits (192), Expect = 2e-17
 Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           +LLLV+D+ +L   L   L  E + V+   +G  A   L++   +Y L + D M+P L+G
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE---SYKLVLLDVMMPKLNG 59

Query: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXXXXX 121
           +E  +++R + S++P++MLTA+ +  DRV GL+ GADD L KPF   E            
Sbjct: 60  IETLKEIR-KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118

Query: 122 PELQPQQLQVGQWWLD----YGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQI 177
                    V     D    + +  + T  +  + LT  EF++L   +K    ++S E++
Sbjct: 119 ASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREEL 178

Query: 178 KNQLWALSAESTSNVVAAQVRLLRRKL-EEYSHGNLIETVYGLGY 221
             ++           +   +  LRRKL +  +  +  +T+ G GY
Sbjct: 179 SLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 63.9 bits (154), Expect = 4e-13
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 3   LLLVEDEPDLGMALEKALRRE-NYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           LLLV+DEP +  +++  L    ++ VD   +   AW YL        L I D M+P + G
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLP--ALVISDIMMPQVDG 115

Query: 62  LELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPF 105
            +  QKLR   +  SLP++ LTA+    DR++G   G D +L KPF
Sbjct: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPF 161


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +L+VEDE  +   + + L  ENY +   ++G +A   L+   V   L I D M+P + G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 63  ELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPF 105
            L   L+   + +++P + LTA   + D  +G+++GADDYLIKPF
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPF 108


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +L+V+D  +    + + L  E Y   +V  G  A   + Q   +  L + D M+PG+ GL
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPD--LILLDLMMPGMDGL 77

Query: 63  ELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAE 109
           E+C +L+   Q   +P++ LTA ++  D ++    GA DY+ KPF   E
Sbjct: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPE 126



 Score = 44.3 bits (103), Expect = 3e-07
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
           + +LL ED        +  L++  Y VD V +G  A S L +G  +Y + + D  +P + 
Sbjct: 740 LTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKG--DYDVVLMDVEMPEMD 797

Query: 61  GLELCQKLRGQ--RSSLP-ILMLTAKDQIADRVEGLDAGADDYLIKP 104
           GL   + +R    RS  P I+ +TA     DR   L +G +DY+ KP
Sbjct: 798 GLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           LLLV+D+P+L + ++  L  + Y V    +G  A   L     +  + + D M+P + G 
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPD--MIVCDIMMPEMDGY 67

Query: 63  ELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKPF 105
              +++R     S +P++ L+AK Q  +RV+GL+ GAD Y+ KPF
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPF 112


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           ++L+V+D P+  + L + L    +VV   ++G +A + L + W +  + + D  +P L G
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIA-LWESW-HPQVILMDMQMPVLDG 476

Query: 62  LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPF 105
               QK++   Q     I+ LTA     +R E L AG DD+L KPF
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPF 522


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 21/213 (9%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENY--VVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPG 58
           +R+LLVED+    + L   L +E    V    +DG  A +Y++Q    + + I D  +PG
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQL--FDVVILDVGLPG 65

Query: 59  LSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXXX 118
           + G+E C +++     LP+L+LT+  Q A     ++A A  Y +K  G+A          
Sbjct: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVK--GVAAETLVLAIRS 123

Query: 119 XXX-----PELQPQQLQVG-QWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQIL 172
                     +  Q++Q   Q     G    +        LT +E ++L    K      
Sbjct: 124 VAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGK---- 179

Query: 173 SSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE 205
           S+++I ++L+          V   V  + RKLE
Sbjct: 180 SNQEIADELYI-----APGTVRVHVHTILRKLE 207


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYL---DQGWVNYTLAIFDWMVPG 58
           R+L+V+D     + ++  L +  +VV+ V+ G  A ++L   D+    +++   DW +P 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 59  LSGLELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKP 104
           + GLE+ ++L+  G      I ++TA  +    V+    G DD L+KP
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKP 879



 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 2    RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
            R+LLVED         + LR   + VD   +G +A   L+     Y L + D  +P + G
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNN--AYALVLMDMQMPEMDG 983

Query: 62   LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKP 104
            +E    +R   + + LPI+ +TA     DR   L AG +D+L KP
Sbjct: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKP 1028


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +LLVED       +   L+   + V    DG  A   L     +  L + D ++P ++G 
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQN--FSPDLVVLDIVMPRMNGY 87

Query: 63  ELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPF 105
           E+C++++   +  ++P++M ++K +  DR  G+  GAD Y+ KPF
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPF 132


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 1   MRLLLVEDEPDLGMALEKAL-RRENY-VVDWVQDGNLAWSYLDQGWV-NYTLAIFDWMVP 57
           M++L+VED+P + + LE+AL   E + ++  V +G   +  + Q  V N  L + D  +P
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNG---YGAVQQAAVLNPDLIVMDIGLP 73

Query: 58  GLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEXXXXXXXX 117
           GL G+E  ++++     + I++LT+     + +  L +GAD Y +K   +          
Sbjct: 74  GLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA 133

Query: 118 XXXXPELQPQQLQV 131
                 L PQ  +V
Sbjct: 134 QDGATYLDPQIARV 147


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +LLV+D P+    L   L    Y V  V  G +A   L     +  L + D  +P + G 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPD--LILLDIKMPDMDGY 68

Query: 63  ELCQKLRGQRS--SLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAE 109
           ++C+ ++ +     +PI+ ++A     D+V+  + G  DY+ KPF + E
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEE 117


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           ++L+V+D+  + M L   L++E + V+   +G  A +   +  +   + + D ++P + G
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAE--IKPEVVLLDAVMPVMDG 70

Query: 62  LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMA 108
              CQ L    Q  S  +LM+T  D  A      +AGA DY+ KP   A
Sbjct: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWA 119


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 43.9 bits (102), Expect = 5e-07
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 1   MRLLLVEDEPDLGMALEKALRRENY--VVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPG 58
           +++LL++D P +   +++ +  ++   VV  V  G    S   Q   +  + I D  + G
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQ--TSPDVIILDLNMKG 62

Query: 59  LSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIK 103
           LSGL+  + LR +     IL+LT  D   D    +DAGAD YL+K
Sbjct: 63  LSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLK 107


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 1    MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60
            +++LL ED         + L    Y V    +G      L++ +  Y L + D  +P + 
Sbjct: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF--YDLVLMDMQMPVMD 1247

Query: 61   GLELCQKLRGQRSSLP------ILMLTAKDQIADRVEGLDAGADDYLIKPFGM 107
            G+  C+ +R    +LP      I+ +TA     DR E LDAG D Y+ KP  +
Sbjct: 1248 GITACRHIR---QTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISI 1297


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62
           +LLVED           L  +   V    +G  A + L      Y   + D  +P L+G 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSN--TYDAILMDIQMPMLNGY 777

Query: 63  ELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKP 104
           +  + +R Q    +LPI+ +TA     D+ + LDAG +D+L KP
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
           ++LLVED       L + L R+ Y V    DG  A +       +  L + D  +P + G
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISE--SPQLILMDMSLPIIDG 63

Query: 62  LELCQKLRGQRSS--LPILMLTAKDQIADRVEGLDAGADDYLIKP 104
               ++++G      +PI+ LTA    +DR   + AG DDY  KP
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,453
Number of Sequences: 78
Number of extensions: 885
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 29
Number of HSP's better than  0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 34
length of query: 232
length of database: 48,235
effective HSP length: 60
effective length of query: 172
effective length of database: 43,555
effective search space:  7491460
effective search space used:  7491460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000523 sll0797 
         (234 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000523 sll0797                                            445   e-128
SYNE-PCC-01-000518 sll0789                                            240   3e-66
SYNE-PCC-01-002486 slr1584                                            139   8e-36
SYNE-PCC-01-002672 slr1837                                            137   2e-35
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   122   1e-30
SYNE-PCC-01-000242 sll0396                                            117   3e-29
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   112   1e-27
SYNE-PCC-01-001437 slr0081                                            105   2e-25
SYNE-PCC-01-000414 sll0649                                            103   6e-25
SYNE-PCC-01-001461 slr0115                                             92   2e-21
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    90   7e-21
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   87   4e-20
SYNE-PCC-01-002033 slr0947                                             80   6e-18
SYNE-PCC-01-002635 slr1783                                             67   5e-14
SYNE-PCC-01-000877 sll1330                                             67   7e-14
SYNE-PCC-01-001306 sll1905                                             64   3e-13
SYNE-PCC-01-002873 slr2098                                             62   1e-12
SYNE-PCC-01-002731 slr1909                                             61   3e-12
SYNE-PCC-01-002086 slr1042                                             59   1e-11
SYNE-PCC-01-001133 sll1673                                             56   9e-11
SYNE-PCC-01-002489 slr1588                                             56   1e-10
SYNE-PCC-01-002617 slr1759                                             55   2e-10
SYNE-PCC-01-000800 sll1228                                             52   2e-09
SYNE-PCC-01-002618 slr1760                                             49   1e-08
SYNE-PCC-01-001075 sll1592                                             47   7e-08
SYNE-PCC-01-001132 sll1672                                             46   1e-07
SYNE-PCC-01-002879 slr2104                                             45   3e-07
SYNE-PCC-01-002788 slr1982                                             45   3e-07
SYNE-PCC-01-001160 sll1708                                             43   8e-07
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    42   2e-06
SYNE-PCC-01-002221 slr1213                                             41   3e-06

>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  445 bits (1145), Expect = e-128
 Identities = 223/234 (95%), Positives = 223/234 (95%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
           MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60

Query: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXX 120
           GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAE           
Sbjct: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR 120

Query: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180
           SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS
Sbjct: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180

Query: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFTLSP 234
           GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFTLSP
Sbjct: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFTLSP 234


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  240 bits (613), Expect = 3e-66
 Identities = 127/234 (54%), Positives = 159/234 (67%), Gaps = 7/234 (2%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
           MR+LLVEDE DLGMA++K L  E YVVDWV DG+ AW YL+  W  YTLAI DW++PGLS
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXX 120
           GLELCQKLR Q +SLP+LMLTA  +  +RVEGLDAGADDYL KPF MAE           
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180
           SP+ QPQ L +G + LD      +  +  P   E+  I LT +EFQ+ +Y M++P++I+S
Sbjct: 121 SPELQPQQLQVGQWWLDYG----TFAVVTP---EQARITLTAKEFQLLEYFMKHPQQILS 173

Query: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFTLSP 234
             +I+ QLW L  E  SNVVAAQ+RL+RRKL + +    I+TV G GYRF   P
Sbjct: 174 SEQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQPHP 227


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  139 bits (350), Expect = 8e-36
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
           MRILLVED+  L   + + L  + Y VD  TD S AWDY      EY L I+D +LP L 
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASR--LEYDLVILDVMLPELD 58

Query: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXX 120
           G+ LCQK R+    +P+LM+TA     +++ GLDAGADDY+ KP  + E           
Sbjct: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118

Query: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180
                  +L  G   LDPS        +  ++ + + ++LT +E+ I + L++N  R++S
Sbjct: 119 GCATCQPVLEWGPIRLDPS--------TYEVSYDNEVLSLTRKEYSILELLLRNGRRVLS 170

Query: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPC-PIKTVPGQGYR 229
            S I   +W L+  P  + V   +R +R+KL         I+TV G GYR
Sbjct: 171 RSMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  137 bits (346), Expect = 2e-35
 Identities = 88/234 (37%), Positives = 123/234 (52%), Gaps = 12/234 (5%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           ILLV+DE  L   + K L  + + +D    G            +Y L I+DW+LP +SGL
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAG--QYDLLILDWMLPQVSGL 61

Query: 63  ELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXXSP 122
           E+C+++R  G+S PVL LTA    ++RV GLDAG DDYL KPF + E             
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 123 QFQPQILTLGNFSLDPSNNLLSV------TISEPLNLERQEIALTVREFQIFQYLMQNPE 176
             +    TLG       NNLLSV        ++    + Q IAL+ +E  +    +Q P 
Sbjct: 122 HGETITETLGAV----KNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPG 177

Query: 177 RIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRF 230
           +I+S  +I   LW  +  P SNV+AA +RL+RRK+ Q N P  I +V G+GY F
Sbjct: 178 QILSHEEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGYCF 231


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  122 bits (306), Expect = 1e-30
 Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 14/228 (6%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
           MRILL+ED+  +G  ++  L    + VDW TDG      L +    Y   ++D  LP L 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTS--APYDAVVLDLTLPKLD 58

Query: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXX 120
           GLE+ Q+ R+    +PVL+LTA    + RV+GL +GADDYL KPF +AE           
Sbjct: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118

Query: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180
              +   ++      LD   N  SV       L  Q I+LT RE+++ +  M N +R++S
Sbjct: 119 RYGYHHSVIEQAGVKLD--QNQRSVW------LNNQPISLTSREYKLLELFMLNKDRVLS 170

Query: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGY 228
            S I ++L   DEE  S  +   +  +R+KL +Q     I+TV G GY
Sbjct: 171 RSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQF----IRTVHGVGY 214


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  117 bits (294), Expect = 3e-29
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           R+L+VE+E  L   ++  L  E Y V    DG +   + + Q     L IV+  LPG+SG
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKG--FTQAQEFPPDLIIVNGALPGMSG 61

Query: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXXS 121
           LELC++LR  G+ +P++++TA  + E RV GLDAGADDY+ KPF   E           +
Sbjct: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121

Query: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181
                ++L   +   + S        +  +    + I LT +EF++  YL+ +  ++++ 
Sbjct: 122 HTTSDEVLQFADLRFNRS--------TREIQRGDRLIDLTAKEFELLDYLLSHARQVLTR 173

Query: 182 SKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGY 228
            +I +++W  D    SN++   +R +R KL     P  I+TV G GY
Sbjct: 174 EQILERVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  112 bits (279), Expect = 1e-27
 Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 13/232 (5%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           +IL+VEDE  +   I   L  + Y V   +D   A + ++       L ++DW+LPG SG
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN---PKLILLDWMLPGRSG 60

Query: 62  LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXX 119
           ++  Q ++ Q +  ++P++MLTA    E+ +  L+AGADDY+TKPF              
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 XSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERII 179
              + Q Q + +   S+D +        ++ +  ++QEI L+  EF++  + M++PE++ 
Sbjct: 121 RIYEQQSQFIQIDELSIDEN--------AQRVFFQQQEINLSSTEFKLLHFFMRHPEKVY 172

Query: 180 SGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRFT 231
           S  ++  ++W  D E     V + +R +RR LA   C   I+TV G GYRF+
Sbjct: 173 SREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFS 224


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  105 bits (261), Expect = 2e-25
 Identities = 74/236 (31%), Positives = 118/236 (50%), Gaps = 13/236 (5%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTE------YTLAIVDWL 55
           RIL+VEDE  +   I   L  E Y V  V DG  A   L+ +++E        L I+D +
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQ-EFSEDPGQAAVDLIILDIM 90

Query: 56  LPGLSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXX 115
           LP ++GL++C+ LR  G++ P+L+++A G    +V GL+ GADDY+TKPF + E      
Sbjct: 91  LPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150

Query: 116 XXXXXSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNP 175
                       I     F      +L+       + +  +E++L  +EF++ +  M  P
Sbjct: 151 AMIRRQGLAGNNIAPFRKF-----RDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYP 205

Query: 176 ERIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230
            R+ S  ++ + +W +D    S  V   +R +R KL Q  + P  + TV G GYRF
Sbjct: 206 RRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  103 bits (256), Expect = 6e-25
 Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           IL+VED+ ++   I++ L  E++      DG       + Q  +  L ++D +LP L GL
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD--LIVLDLMLPKLDGL 71

Query: 63  ELCQKLRTQGNSLP--VLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXX 120
           E+C ++R Q  S    +LMLTA GE  +R+ GL  GADDYL KPF   E           
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 121 S-PQFQP--QILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPER 177
              Q QP  QI    +F +D   +  S    +     ++E+ LT  EF +    M  P R
Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGD----RQEELELTGLEFNLLATFMSYPGR 187

Query: 178 IISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNC-PCPIKTVPGQGYRF 230
           + + +++ ++LW  D      VV   +R +R+K+      P  IKTV G GY+F
Sbjct: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 91.7 bits (226), Expect = 2e-21
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           RIL+++D+  +   +   L    Y V    DG +          +  L ++D +LP + G
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPD--LIMLDLMLPKVDG 60

Query: 62  LELCQKLRTQGNS--LPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXX 119
             +CQ+LR    +  +PVLMLTALG+ +++++G D+GADDYLTKPF + E          
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 120 XSPQF-----QPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQN 174
            + +        +IL  G  +L P     ++          + I LT  EF++   L+Q 
Sbjct: 121 RTDRIPQAAKHSEILNQGPLTLVP-ERFEAIWFG-------KSIKLTHLEFELLHCLLQR 172

Query: 175 PERIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKL-AQQNCPCPIKTVPGQGYRFTLS 233
             + +S S I +++W  + +     +   +R +R KL      P  IKTV G GY   LS
Sbjct: 173 HGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELS 232


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 89.7 bits (221), Expect = 7e-21
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 4/230 (1%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           +IL+VEDE      +K +  +E Y V    +G +    L N      L ++D  LPG +G
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANH--NINLVVMDINLPGKNG 62

Query: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXXS 121
           L L ++LR +  SLP++ LT      +++ GL+ GADDYLTKPF   E           +
Sbjct: 63  LLLARELREE-LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121

Query: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181
              Q +  T G      +   L +     +  E QE  L   EF+   +  +NP ++ + 
Sbjct: 122 MPHQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTR 181

Query: 182 SKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230
            ++ +++   + +P    V   +R IR+      N P  I T+ G+GYRF
Sbjct: 182 EELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 87.4 bits (215), Expect = 4e-20
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 30/239 (12%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           ++LLV+D+ +L   +  +L  E + V+   +G +A   L      Y L ++D ++P L+G
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNES---YKLVLLDVMMPKLNG 59

Query: 62  LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXXXXS 121
           +E  +++R   N +PV+MLTA GE  +RV GL+ GADD L KPF   E            
Sbjct: 60  IETLKEIRKVSN-VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIA--------- 109

Query: 122 PQFQPQILTLGNFSLDPSNNLLSVTISE-----------PLNLERQEIALTVREFQIFQY 170
                +I  +   S  PSNN+ +V I                   + + LT  EF+I   
Sbjct: 110 -----RIKAILRRSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCL 164

Query: 171 LMQNPERIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKL-AQQNCPCPIKTVPGQGY 228
           L+++   ++S  ++  ++ +    P    +   +  +RRKL  ++N P   KT+ G+GY
Sbjct: 165 LLKSKGNVVSREELSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 80.1 bits (196), Expect = 6e-18
 Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 22/236 (9%)

Query: 5   LVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGLEL 64
           +V+DE  +   ++  L    Y V    DG +A        ++  L ++D ++P L G  +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHE--SDPDLVVLDVMMPKLDGYGV 58

Query: 65  CQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAE-XXXXXXXXXXXSPQ 123
           CQ+LR + + +P++MLTALG+  +R+ GL+ GADDY+ KPF   E               
Sbjct: 59  CQELRKESD-IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 124 FQPQILTLGNFSLDPSNNLLSV-TISEPLNLER-----QEIALTVREFQIFQYLMQNPER 177
             P I         PS+ +L + TI    N  +     + I LT  EF + + L+     
Sbjct: 118 GMPGI---------PSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGE 168

Query: 178 IISGSKIRQQLWDLDEEPM--SNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230
             S S+I Q++W    E    + VV   +  +R KL +  + P  I T  G GY F
Sbjct: 169 PFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 67.0 bits (162), Expect = 5e-14
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 3   ILLVEDETDLGMAIKKVLV-SEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           +LLV+DE  +  +++  L  S  + VD   + ++AWDYL++      L I D ++P + G
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLP--ALVISDIMMPQVDG 115

Query: 62  LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
            +  QKLR      SLPV+ LTA G   +R++G   G D +L+KPF
Sbjct: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPF 161


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 66.6 bits (161), Expect = 7e-14
 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           I +VE    L   +   L    Y+V   +   QA     NQ    TLA++D  L    G+
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLP--TLAVIDSDLTDGDGI 63

Query: 63  ELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXX-XXXXXS 121
           ELC+ L  Q  S+ + +L+A    ++ V GL AGADDYLTKPF M E             
Sbjct: 64  ELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122

Query: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181
               P +L  G   +D         +   +  +   + LT +EF +   L Q     +S 
Sbjct: 123 TVAAPLLLDYGVLKID--------LVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSR 174

Query: 182 SKIRQQLWDLDEEPMSN--VVAAQMRLIRRKL-AQQNCPCPIKTVPGQGYRFTLS 233
           +++ ++ W    E + N   +   +  +R+K+      P  I+TV   GYRF  S
Sbjct: 175 TELLRRAW---PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSS 226


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           IL+V+D  +    I ++L  E Y   +VT G +A   +     +  L ++D ++PG+ GL
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPD--LILLDLMMPGMDGL 77

Query: 63  ELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
           E+C +L+   Q   +PV+ LTA  E ++ ++    GA DY+TKPF
Sbjct: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPF 122



 Score = 41.2 bits (95), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
           + ILL ED        K +L    Y VD V +G +A   L     +Y + ++D  +P + 
Sbjct: 740 LTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKG--DYDVVLMDVEMPEMD 797

Query: 61  GLELCQKLR-TQGNSLP--VLMLTALGEPENRVEGLDAGADDYLTKP 104
           GL   + +R +QG S    ++ +TA     +R   L +G +DY++KP
Sbjct: 798 GLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 62.4 bits (150), Expect = 1e-12
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTE---YTLAIVDWLLPG 58
           R+L+V+D     + +K +L   K+VV+ V  G +A ++L     E   +++  +DW +P 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 59  LSGLELCQKLRTQG-NSLP-VLMLTALGEPENRVEGLDAGADDYLTKP 104
           + GLE+ ++L+  G N  P + ++TA G  E  V+    G DD L KP
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKP 879



 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 2    RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
            RILLVED         ++L    + VD   +G  A + L N    Y L ++D  +P + G
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNN--AYALVLMDMQMPEMDG 983

Query: 62   LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKP 104
            +E    +R       LP++ +TA     +R   L AG +D+L KP
Sbjct: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKP 1028


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           +LLV+D+ +L + +K  L  + Y V    +G +A D L    T   + + D ++P + G 
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTT--TVPDMIVCDIMMPEMDGY 67

Query: 63  ELCQKLRTQGNS--LPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
              +++R   +   +PV+ L+A G+  NRV+GL+ GAD Y+ KPF
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPF 112


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 33/105 (31%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           +LLVED +     I  +L    + V    DG +A + L+N   +  L ++D ++P ++G 
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPD--LVVLDIVMPRMNGY 87

Query: 63  ELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
           E+C+++++  +  ++PV+M ++ GE  +R  G+  GAD Y+ KPF
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPF 132


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 56.2 bits (134), Expect = 9e-11
 Identities = 31/109 (28%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           ILLV+D  +    +  +L++  Y V  VT G  A   L+ +  +  L ++D  +P + G 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPD--LILLDIKMPDMDGY 68

Query: 63  ELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAE 109
           ++C+ ++ +     +P++ ++ALG+  ++V+  + G  DY+TKPF + E
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEE 117


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           IL+VEDE  +   I + L  E Y +    +G+ A   L +      L I D ++P + G 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 63  ELCQKLRTQGNS--LPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
            L   L+    +  +P + LTALG  ++  +G+++GADDYL KPF
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPF 108


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 13/141 (9%)

Query: 1    MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60
            ++ILL ED         ++L +  Y V    +G +  D LE ++  Y L ++D  +P + 
Sbjct: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF--YDLVLMDMQMPVMD 1247

Query: 61   GLELCQKLRTQGNSLP------VLMLTALGEPENRVEGLDAGADDYLTKPFVMAE--XXX 112
            G+  C+ +R    +LP      ++ +TA   P +R E LDAG D Y++KP  + +     
Sbjct: 1248 GITACRHIR---QTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVL 1304

Query: 113  XXXXXXXXSPQFQPQILTLGN 133
                    SPQ +  I+TLG+
Sbjct: 1305 QDTSALITSPQAREDIVTLGD 1325


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           ++L+V+D  +  + ++++L S  +VV    +G  A    E+ W    + ++D  +P L G
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWES-WHPQVI-LMDMQMPVLDG 476

Query: 62  LELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
               QK++   QG    ++ LTA      R E L AG DD+L+KPF
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPF 522


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           +IL+V+D+  + M ++  L  E + V+  T+G +A         E  L  +D ++P + G
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVL--LDAVMPVMDG 70

Query: 62  LELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKP 104
              CQ L    Q  S  VLM+T L +  +     +AGA DY+TKP
Sbjct: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKP 115


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKY--VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58
           +RILLVED+    + +   L  E    V     DG  A  Y+  Q   + + I+D  LPG
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQL--FDVVILDVGLPG 65

Query: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTK 103
           + G+E C +++     LPVL+LT+  +P      ++A A  Y  K
Sbjct: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVK 110


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           +IL+V+D++     + K+L    + ++  ++G +A    E+ W  + L  +D  +P + G
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWES-WEPH-LIFMDMRMPVMDG 688

Query: 62  LELCQKLRTQ--GNSLPVLMLTALGEPENRVEGLDAGADDYLTKPF 105
            E  + ++ Q  GN+  V+ LTA    E +   L AG DD+L KPF
Sbjct: 689 YEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62
           ILLVED          +L S+   V    +G +A   L +    Y   ++D  +P L+G 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSN--TYDAILMDIQMPMLNGY 777

Query: 63  ELCQKLRTQG--NSLPVLMLTALGEPENRVEGLDAGADDYLTKP 104
           +  + +R Q    +LP++ +TA     ++ + LDAG +D+LTKP
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
           ++LLVED       + + L+ + Y V    DG QA     ++  +  L ++D  LP + G
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQ--LILMDMSLPIIDG 63

Query: 62  LELCQKLR--TQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKP 104
               ++++    G  +P++ LTA     +R   + AG DDY TKP
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 1   MRILLVEDETDLGMAIKKVL-VSEKY-VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58
           M+IL+VED+  + + +++ L   E++ ++  V +G  A    +       L ++D  LPG
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQ--QAAVLNPDLIVMDIGLPG 74

Query: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAEXXXXXXXXX 118
           L G+E  ++++     + +++LT+   P   +  L +GAD Y  K   +           
Sbjct: 75  LDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQ 134

Query: 119 XXSPQFQPQILTLGNFSLDP 138
             +    PQI  +   +L P
Sbjct: 135 DGATYLDPQIARVVVENLKP 154


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 1   MRILLVEDETDLGMAIKKVLVSEKY--VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58
           +++LL++D   +   IK+++  +    VV  V+ G++         T   + I+D  + G
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQ--TSPDVIILDLNMKG 62

Query: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTK 103
           LSGL+  + LR +G    +L+LT      +    +DAGAD YL K
Sbjct: 63  LSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLK 107


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 41.2 bits (95), Expect = 3e-06
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWV-TDGSQAWDYLENQWTEYTLAIVDWLLPG-L 59
           +IL+VEDE  +   I ++L S+ Y +  + +DG+ A   +   + +  L ++D  + G +
Sbjct: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPD--LVLLDIRIKGEI 61

Query: 60  SGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAE-XXXXXXXXX 118
            G+E+ +++++   S+P++ LTA  + E            Y+ KPF   +          
Sbjct: 62  DGIEVAERIKSL-YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120

Query: 119 XXSPQFQPQILTL----GNFSLDPSNNLLSVTISEPLNLE 154
               Q +P+  TL    G++ L P+ + +   + + + +E
Sbjct: 121 NHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVE 160


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,896
Number of Sequences: 78
Number of extensions: 921
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 31
Number of HSP's better than  0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 34
length of query: 234
length of database: 48,235
effective HSP length: 60
effective length of query: 174
effective length of database: 43,555
effective search space:  7578570
effective search space used:  7578570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000542 sll0821 
         (1276 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000542 sll0821                                           2479   0.0  
SYNE-PCC-01-002489 slr1588                                            193   3e-51
SYNE-PCC-01-002618 slr1760                                            177   2e-46
SYNE-PCC-01-001133 sll1673                                            162   6e-42
SYNE-PCC-01-002220 slr1212                                            143   3e-36
SYNE-PCC-01-000983 sll1473                                            135   8e-34
SYNE-PCC-01-002778 slr1969                                             99   8e-23
SYNE-PCC-01-001690 slr0473                                             87   3e-19
SYNE-PCC-01-002617 slr1759                                             55   1e-09

>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score = 2479 bits (6425), Expect = 0.0
 Identities = 1242/1276 (97%), Positives = 1242/1276 (97%)

Query: 1    MNPNRSLEDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAE 60
            MNPNRSLEDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAE
Sbjct: 1    MNPNRSLEDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAE 60

Query: 61   AVNRAALPSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSN 120
            AVNRAALPSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSN
Sbjct: 61   AVNRAALPSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSN 120

Query: 121  GHYTTVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPRRFTEQEWETMALLSK 180
            GHYTTVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPRRFTEQEWETMALLSK
Sbjct: 121  GHYTTVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPRRFTEQEWETMALLSK 180

Query: 181  EVSLAITXXXXXXXXXXXXXXXXXXXXXXTTVAQYGDRPETWQYALETVGQAVEADGAVL 240
            EVSLAIT                      TTVAQYGDRPETWQYALETVGQAVEADGAVL
Sbjct: 181  EVSLAITQSQLSRQVHQQQVQEALVQRLETTVAQYGDRPETWQYALETVGQAVEADGAVL 240

Query: 241  YIAPDLTGSVAQHYQWNLRFDWGNWLETSLWQELMRGQPSAAMEPMAAVQSTWEKPRPFT 300
            YIAPDLTGSVAQHYQWNLRFDWGNWLETSLWQELMRGQPSAAMEPMAAVQSTWEKPRPFT
Sbjct: 241  YIAPDLTGSVAQHYQWNLRFDWGNWLETSLWQELMRGQPSAAMEPMAAVQSTWEKPRPFT 300

Query: 301  SVAPLPPTNCVPHGYTLGELEQRSDWIAPPESLSAENFQSFLIVPLAADQQWVGSLILLR 360
            SVAPLPPTNCVPHGYTLGELEQRSDWIAPPESLSAENFQSFLIVPLAADQQWVGSLILLR
Sbjct: 301  SVAPLPPTNCVPHGYTLGELEQRSDWIAPPESLSAENFQSFLIVPLAADQQWVGSLILLR 360

Query: 361  KEKSLVKHWAGKRGIDRRNILPRLSFEAWEETQKLVPTWNRSERKLAQVASTQLYMAITQ 420
            KEKSLVKHWAGKRGIDRRNILPRLSFEAWEETQKLVPTWNRSERKLAQVASTQLYMAITQ
Sbjct: 361  KEKSLVKHWAGKRGIDRRNILPRLSFEAWEETQKLVPTWNRSERKLAQVASTQLYMAITQ 420

Query: 421  QFVTRLITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESF 480
            QFVTRLITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESF
Sbjct: 421  QFVTRLITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESF 480

Query: 481  GHKTGDGLLQEVADRLNQKXXXXXXXXXXXXRWHGDGFTILLTQISDNQEMIPLCERLLS 540
            GHKTGDGLLQEVADRLNQK            RWHGDGFTILLTQISDNQEMIPLCERLLS
Sbjct: 481  GHKTGDGLLQEVADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLS 540

Query: 541  TFQEPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYRPQD 600
            TFQEPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYRPQD
Sbjct: 541  TFQEPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQFYRPQD 600

Query: 601  SAPMLDRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVF 660
            SAPMLDRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVF
Sbjct: 601  SAPMLDRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVF 660

Query: 661  IPLAEELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECL 720
            IPLAEELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECL
Sbjct: 661  IPLAEELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECL 720

Query: 721  KRTGMPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPI 780
            KRTGMPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPI
Sbjct: 721  KRTGMPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPI 780

Query: 781  HRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQ 840
            HRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQ
Sbjct: 781  HRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQ 840

Query: 841  GYFLTRPLPAEAMMTYLYYPQILDFGPTPPLPKVALPETETEAGQGNVGDRPLPNSLNRE 900
            GYFLTRPLPAEAMMTYLYYPQILDFGPTPPLPKVALPETETEAGQGNVGDRPLPNSLNRE
Sbjct: 841  GYFLTRPLPAEAMMTYLYYPQILDFGPTPPLPKVALPETETEAGQGNVGDRPLPNSLNRE 900

Query: 901  NPWTEKLHDYVLLKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRV 960
            NPWTEKLHDYVLLKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRV
Sbjct: 901  NPWTEKLHDYVLLKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRV 960

Query: 961  VLFKFNSQWSGQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLA 1020
            VLFKFNSQWSGQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLA
Sbjct: 961  VLFKFNSQWSGQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLA 1020

Query: 1021 DCHKELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAI 1080
            DCHKELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAI
Sbjct: 1021 DCHKELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAI 1080

Query: 1081 HQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVD 1140
            HQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVD
Sbjct: 1081 HQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVD 1140

Query: 1141 FFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVT 1200
            FFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVT
Sbjct: 1141 FFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVT 1200

Query: 1201 EALQVEVANLAIPHTVSGTGHVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQ 1260
            EALQVEVANLAIPHTVSGTGHVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQ
Sbjct: 1201 EALQVEVANLAIPHTVSGTGHVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQ 1260

Query: 1261 WLAYEGSQLPHVDGEV 1276
            WLAYEGSQLPHVDGEV
Sbjct: 1261 WLAYEGSQLPHVDGEV 1276


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score =  193 bits (490), Expect = 3e-51
 Identities = 104/249 (41%), Positives = 153/249 (61%), Gaps = 10/249 (4%)

Query: 606 DRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFIPLAE 665
           D   +  DL   L   +  L++QP+V++    L G EAL+RW HPR G V+P +FIP+AE
Sbjct: 157 DEAEIWRDLEVGLNTGQVFLFYQPKVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAE 216

Query: 666 ELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECLKRTG- 724
           + G I+ +G+WV+ET     Q +  +    +++A+NISARQF  E      L C+ R G 
Sbjct: 217 KTGFISVVGEWVIETVLRQCQQWQYQGLDPIQVAINISARQFHGED-----LICILRLGT 271

Query: 725 ----MPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPI 780
               + P+ LE+E+TE+L++++++ ++  L+ LR EG  VAIDDFGTGYSSLS L+Q P 
Sbjct: 272 HKYDVSPQQLEVELTETLLVKNVQDSIKQLNELRAEGFSVAIDDFGTGYSSLSYLQQFPF 331

Query: 781 HRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQ 840
             LKID+SFV  +     +  I   +I+LA+ L L   AEG+E+ A+   +  MGC   Q
Sbjct: 332 DVLKIDQSFVRHIDKNAKNKTITASIINLAHELELRVTAEGVETWAEYDTIAHMGCDELQ 391

Query: 841 GYFLTRPLP 849
           GY  +RPLP
Sbjct: 392 GYLFSRPLP 400


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score =  177 bits (448), Expect = 2e-46
 Identities = 90/190 (47%), Positives = 123/190 (64%), Gaps = 1/190 (0%)

Query: 1072 LATQVAIAIHQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREP 1131
            L  +V   ++Q  L  QLE+ N  L++++ +D LTQ+ NR   +  L+ EW    R + P
Sbjct: 121  LRQRVKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYP 180

Query: 1132 LALLLCDVDFFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSET 1191
             ++LLCD+D+FK +ND+YGH  GD CL+++A A+ +V  RP DL ARYGGEEF I+L  T
Sbjct: 181  FSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNT 240

Query: 1192 SLEGAINVTEALQVEVANLAIPHTVSG-TGHVTLSIGIAVYTPERHINPNALVKAADLAL 1250
             L+GAI++ E +Q E+  LAIPH  S    HVTLSIG A   P    +   LV AAD  L
Sbjct: 241  DLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYL 300

Query: 1251 YEAKAKGRNQ 1260
            YEAKA+GRN+
Sbjct: 301  YEAKAQGRNR 310



 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)

Query: 423 VTRLITQQTAYDPLTQLPNWIIFNRQLTLAL----LDALYEGKMVGVLVIAMDRFKRINE 478
           V +++ +    D LTQL N     RQL L L     +A+ E     +L+  +D FK  N+
Sbjct: 141 VNQMLERLAKVDQLTQLAN----RRQLELFLDTEWSEAIREQYPFSILLCDIDYFKNYND 196

Query: 479 SFGHKTGDGLLQEVADRLNQKXXXXXXXXXXXXRWHGDGFTILLTQISDNQEMIPLCERL 538
            +GH+ GD  LQ+VA  L +             R+ G+ F I+L   +D Q  I + E +
Sbjct: 197 HYGHQGGDDCLQQVAKALTR---VVHRPKDLAARYGGEEFLIVLPN-TDLQGAIHIGEDI 252

Query: 539 ---LSTFQEPFFLQGQPIYLTASMG-ISTAPYDGETAESLLKFAEIALTRAKCQGKN 591
              ++    P        ++T S+G  ST P  G     L+  A+  L  AK QG+N
Sbjct: 253 QAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAKAQGRN 309


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score =  162 bits (410), Expect = 6e-42
 Identities = 81/177 (45%), Positives = 119/177 (67%), Gaps = 1/177 (0%)

Query: 1088 QLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFND 1147
            +L+ AN +LQ ++++D LT + NR  FD  L +EWQR  R ++PL+L+L D+D+FK +ND
Sbjct: 276  ELQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYND 335

Query: 1148 NYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEV 1207
             YGH  GD CL+K+A+ +  +AKR TDLVARYGGEEF I+L  T+ + A+ + E +   +
Sbjct: 336  LYGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAI 395

Query: 1208 ANLAIPHTVSGTG-HVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQWLA 1263
            A LAIPH  S    +VT+SIG++   P        ++  AD ALY AK++GRN+ +A
Sbjct: 396  AALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452



 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 434 DPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGDGLLQEVA 493
           D LT + N   F+  L         E K + ++++ +D FK  N+ +GH+ GD  LQ+VA
Sbjct: 291 DGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVA 350

Query: 494 DRLNQKXXXXXXXXXXXXRWHGDGFTILLTQISDNQEMIPLCERLLSTFQE---PFFLQG 550
           + L               R+ G+ F I+L   ++ Q+ + + E +L        P     
Sbjct: 351 NTL---VDIAKRITDLVARYGGEEFVIVLPN-TNRQDALAMAENMLQAIAALAIPHEGSS 406

Query: 551 QPIYLTASMGIST-APYDGETAESLLKFAEIALTRAKCQGKN 591
              Y+T S+G+S+  P   +T E ++  A+ AL  AK QG+N
Sbjct: 407 VSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRN 448


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score =  143 bits (361), Expect = 3e-36
 Identities = 71/180 (39%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 914  KERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFN--SQWS- 970
            ++RL ++  +E L+ +I  +IR SL++  I  + V E+RQFL  DRVV+F+F+  S +S 
Sbjct: 450  EQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSV 509

Query: 971  GQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLADCHKELLRHY 1030
            G +V ES     + IIN  I++ CF  +Y + Y++GR++ + DI ++ L  CH + L   
Sbjct: 510  GNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQVIEDIHQSHLRQCHIDFLARL 569

Query: 1031 QVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAIHQGELYEQLE 1090
            QV+ANLV+P++ +  LWGLL  H+C + R W++ ++ LL ++  Q  IAI Q  LYEQ +
Sbjct: 570  QVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFEIAIQQATLYEQAQ 629



 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 8   EDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGS---GEVLAEAVNR 64
           E  LR +  +  ++L L      +V+E R FL  DRV I++F+ D     G ++AE+V  
Sbjct: 460 ESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLA 519

Query: 65  AALPSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYT 124
                      P + I   A EE        + + A R ++     GRI   E    H +
Sbjct: 520 -----------PFKPIINSAIEET-----CFSNNYAQRYQQ-----GRIQVIEDI--HQS 556

Query: 125 TVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPRRFTEQ-EWETMALLSKEVS 183
            +  CHI +L  + V ++L +P++ D  LWG++ +H     R  EQ E + +  ++ +  
Sbjct: 557 HLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFE 616

Query: 184 LAI 186
           +AI
Sbjct: 617 IAI 619


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score =  135 bits (340), Expect = 8e-34
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 12/207 (5%)

Query: 903  WTEKLHDYVLLKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVL 962
            W  +  +   ++  ++Q+  +E+ + +I   IR SLN+  +L +TV EV+  L  DRV++
Sbjct: 22   WHRQNQERRRIEISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLI 81

Query: 963  FKFNSQWSGQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLADC 1022
            ++     +G  +TES N    SI+     D  F   Y + Y +G+VRA++DI++ D+  C
Sbjct: 82   YRIWQDGTGSAITESVNANYPSILGRTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEIC 141

Query: 1023 HKELLRHYQVKANLVVPVVFNEN------------LWGLLIAHECKTPRYWQEEDLQLLM 1070
              + ++ + VK+ LVVP++ +              LWGLLI H+C   R WQ  +++L+ 
Sbjct: 142  LADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVELMK 201

Query: 1071 ELATQVAIAIHQGELYEQLETANIRLQ 1097
            +LA QVAIAI Q ELYEQL+  N  L+
Sbjct: 202  QLANQVAIAIQQSELYEQLQQLNKDLE 228



 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 36/192 (18%)

Query: 8   EDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAEAVNRAAL 67
           E F+  +     ++L L   L   V E +  L VDRV IY+   DG+G  + E+VN A  
Sbjct: 43  ERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVN-ANY 101

Query: 68  PSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYTTVD 127
           PS+LG  F  E  P +  +     +     D+                          ++
Sbjct: 102 PSILGRTFSDEVFPVEYHQAYTKGKVRAINDI----------------------DQDDIE 139

Query: 128 SCHIQYLLAMGVLSSLTVPVMQDQQ------------LWGIMAVHH-SKPRRFTEQEWET 174
            C   ++   GV S L VP++Q  +            LWG++  H  +  R +   E E 
Sbjct: 140 ICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVEL 199

Query: 175 MALLSKEVSLAI 186
           M  L+ +V++AI
Sbjct: 200 MKQLANQVAIAI 211


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 99.0 bits (245), Expect = 8e-23
 Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 25/201 (12%)

Query: 913  LKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFN------ 966
            L++ LQ   VK  L+ ++  +IR SL++++IL + VT V++FL  DR+V+++F+      
Sbjct: 150  LQDSLQASQVK--LLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSL 207

Query: 967  -------------SQWSGQVVTESHND-FCRSIINDEIDDPCFKG--HYLRLYREGRVRA 1010
                          Q  G+V  E+       +++    ++ CF     Y + Y +G V A
Sbjct: 208  TPLEENQIPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVA 267

Query: 1011 VSDIEKADLAD-CHKELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLL 1069
            VSDIE    +  C   LL+ YQV+A LV P++    LWGLLIAH+C  PR W + +   L
Sbjct: 268  VSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFL 327

Query: 1070 MELATQVAIAIHQGELYEQLE 1090
             ++   +A+AI Q  LY +++
Sbjct: 328  GQIGEHLAVAIVQSLLYSEVQ 348


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 9/156 (5%)

Query: 15  INKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAEAVNRAALPSLLGLH 74
           +N+  +   LR+   VIVEE R   G DRV +Y+F  +  G+V+AE   R  +   LGLH
Sbjct: 144 LNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAED-KRDDMEPYLGLH 202

Query: 75  FPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYT-----TVDSC 129
           +P  DIP  AR    +    +  DV      +  L+  ++P+ +     T     +   C
Sbjct: 203 YPESDIPQPARRLFIHNPIRVIPDVYG---VAVPLTPAVNPSTNRAVDLTESILRSAYHC 259

Query: 130 HIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPR 165
           H+ YL  MGV +SLT+ +++D  LWG++A HH  P+
Sbjct: 260 HLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPK 295



 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 25/152 (16%)

Query: 932  NKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFNSQWSGQVVTESHNDFCRSIINDEID 991
            N++R   N+ D     V EVR+    DRV+L++F+    G V+ E   D     +     
Sbjct: 145  NRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYP 204

Query: 992  DPCFKGHYLRLYREGRVRAVSDI----------------EKADLAD--------CHKELL 1027
            +        RL+    +R + D+                   DL +        CH   L
Sbjct: 205  ESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTYL 264

Query: 1028 RHYQVKANLVVPVVFNENLWGLLIAHECKTPR 1059
            ++  V A+L + ++ + +LWGL+  H  +TP+
Sbjct: 265  KNMGVGASLTISLIKDGHLWGLIACHH-QTPK 295


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 913  LKERLQQRNVKEK------LVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFN 966
            + +R Q +++ +K      L+ KI+ +IR SL    I  +   +V       R ++  ++
Sbjct: 568  ITDRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYS 627

Query: 967  SQWSGQV--VTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLADCH- 1023
               + QV  V E       S++  EI     + +   + +  R  AV D+++ DL   H 
Sbjct: 628  EATTLQVPVVAEYLGGQFTSLLAGEI--AVEQAYDPTIIQGDRAMAVVDLDQ-DLNSTHT 684

Query: 1024 KELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAIHQG 1083
            K   + +QVK+ L V   +     G++  H+C   R W  ++++LL  +A Q+ IA+ Q 
Sbjct: 685  KAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEIELLEAIAEQMGIALAQA 744

Query: 1084 ELYEQ 1088
             L E+
Sbjct: 745  ALLEK 749


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,699
Number of Sequences: 78
Number of extensions: 4932
Number of successful extensions: 59
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 19
length of query: 1276
length of database: 48,235
effective HSP length: 74
effective length of query: 1202
effective length of database: 42,463
effective search space: 51040526
effective search space used: 51040526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000608 sll0921 
         (222 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000608 sll0921                                            406   e-116
SYNE-PCC-01-001160 sll1708                                            166   8e-44
SYNE-PCC-01-001075 sll1592                                            142   1e-36
SYNE-PCC-01-001575 slr0312                                            128   2e-32
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...   121   2e-30
SYNE-PCC-01-001039 sll1544                                             82   1e-18
SYNE-PCC-01-002731 slr1909                                             79   1e-17
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    59   2e-11
SYNE-PCC-01-001461 slr0115                                             57   4e-11
SYNE-PCC-01-000414 sll0649                                             54   3e-10
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    54   3e-10
SYNE-PCC-01-002489 slr1588                                             54   4e-10
SYNE-PCC-01-000511 sll0782                                             53   9e-10
SYNE-PCC-01-002879 slr2104                                             52   2e-09
SYNE-PCC-01-001306 sll1905                                             52   2e-09
SYNE-PCC-01-000800 sll1228                                             50   5e-09
SYNE-PCC-01-000242 sll0396                                             49   1e-08
SYNE-PCC-01-001132 sll1672                                             48   2e-08
SYNE-PCC-01-002618 slr1760                                             48   3e-08
SYNE-PCC-01-001437 slr0081                                             48   3e-08
SYNE-PCC-01-002951 ssl0564                                             47   4e-08
SYNE-PCC-01-002672 slr1837                                             47   4e-08
SYNE-PCC-01-002086 slr1042                                             47   5e-08
SYNE-PCC-01-002873 slr2098                                             46   1e-07
SYNE-PCC-01-002788 slr1982                                             46   1e-07
SYNE-PCC-01-002033 slr0947                                             46   1e-07
SYNE-PCC-01-001133 sll1673                                             45   3e-07
SYNE-PCC-01-002486 slr1584                                             44   6e-07
SYNE-PCC-01-002221 slr1213                                             43   7e-07
SYNE-PCC-01-002617 slr1759                                             40   6e-06

>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score =  406 bits (1044), Expect = e-116
 Identities = 209/222 (94%), Positives = 209/222 (94%)

Query: 1   MEKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP 60
           MEKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP
Sbjct: 1   MEKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP 60

Query: 61  DMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
           DMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ
Sbjct: 61  DMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120

Query: 121 ATHGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNAD 180
           ATHGGFAWIDPAIARIVLAH             RTSLSYGLTERELEVLQLIVDGCSNAD
Sbjct: 121 ATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNAD 180

Query: 181 IAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222
           IAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN
Sbjct: 181 IAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score =  166 bits (419), Expect = 8e-44
 Identities = 90/218 (41%), Positives = 137/218 (62%), Gaps = 8/218 (3%)

Query: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63
           ++I ++ED+ L++ GL+ AL     FE +G   NG   +       PD++++DIGLP ++
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123
           GI+ T+Q+K+   + Q  +V+LT +     ++AA S+GADAYC+K +  E LI AI A  
Sbjct: 77  GIEATKQIKQ--TSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQ 134

Query: 124 GGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNADIAE 183
            G  ++DP IAR+V+ +                    L+ERE++VL+LIV+G SN +IA+
Sbjct: 135 DGATYLDPQIARVVVENLKPPVPEGQADVS------SLSEREIDVLKLIVEGKSNQEIAQ 188

Query: 184 KLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLV 221
            LY++  T+KTHVR I+NKL  +DR QAAV A+RSGLV
Sbjct: 189 TLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score =  142 bits (357), Expect = 1e-36
 Identities = 87/220 (39%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63
           IRI L+ED++L R GL   L+ EP  +  GEA +G   +  + Q   DVVI+D+GLP + 
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123
           GI+   Q+KK  ++ Q  V+ILT + Q   +     A A  YC+K    E L+ AI++  
Sbjct: 68  GIEACHQIKK--IHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVA 125

Query: 124 GGFAWIDP-AIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNADIA 182
            G  W D  A   I  A                     LT+RELE+L L+  G SN +IA
Sbjct: 126 AGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIA 185

Query: 183 EKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222
           ++LYI  GTV+ HV  IL KL   DRTQAA+ AI   LV+
Sbjct: 186 DELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVS 225


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score =  128 bits (321), Expect = 2e-32
 Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 17/219 (7%)

Query: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63
           IR+ + +D  + RQGL   +  +P  + + +A NG   + + ++ +PDV ++D+ +P++ 
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123
           G+     +    +    R+++LT  D +E +     AGA  Y +K++  + L+ AI+  H
Sbjct: 67  GVAAISAICA--IVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124

Query: 124 GGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNADIAE 183
            G  +I P +   ++                      L+ERELEVL  +  G SNADIA 
Sbjct: 125 RGQKYIPPDVGAKLVQRLSNPE---------------LSERELEVLGSLAQGMSNADIAT 169

Query: 184 KLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222
            L I  GTVK+HV  ILNKL   DRTQA + A++ G+V+
Sbjct: 170 ALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIVS 208


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score =  121 bits (303), Expect = 2e-30
 Identities = 66/212 (31%), Positives = 119/212 (56%), Gaps = 13/212 (6%)

Query: 2   EKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPD 61
           +K+++ LI+D  L+R+G++  + ++ +FE V + ++G  G+ +  QT PDV+I+D+ +  
Sbjct: 3   DKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKG 62

Query: 62  MNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           ++G+D  + L+   ++   R++ILT++D +  +     AGAD Y +KD+  + L+E I+ 
Sbjct: 63  LSGLDTLKGLRAEGVD--ARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKR 120

Query: 122 THGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNADI 181
              G   +  +I  ++L                      LT+RE+ VL+ I  G SN  I
Sbjct: 121 IAQGEVILSDSIKNLLLERTHEDNPLD-----------SLTDREMGVLRQIATGLSNKQI 169

Query: 182 AEKLYITVGTVKTHVRNILNKLCANDRTQAAV 213
           A +L+I+  TVK H+RN+L KL  + R  A V
Sbjct: 170 AAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 82.0 bits (201), Expect = 1e-18
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 17/175 (9%)

Query: 46  QQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAY 105
           QQ  P VV+I   L D +G+D+ +QLK    + QC  ++L LND    V  A   GADA 
Sbjct: 67  QQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQC--LLLLLNDHAAIVEEAQQYGADAI 124

Query: 106 CMKDSRTELLIE-AIQATHGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTER 164
            ++ S     I  A++    G  +ID  +  I                 R S    LT+R
Sbjct: 125 FLESSLGNGEINLAVECLLQGRTYIDSRLEAIA--------------DYRKSQKDELTQR 170

Query: 165 ELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSG 219
           E+ +L+L+ +G +N++I ++L++   TV+ +V+ I+ KL A DRT AA+  +R G
Sbjct: 171 EVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 79.0 bits (193), Expect = 1e-17
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 12/219 (5%)

Query: 2   EKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPD 61
           E   + L++D+  +   ++D L  E     V  A NGR  L ++  T PD+++ DI +P+
Sbjct: 6   ENYHLLLVDDDPNLLLLVKDYL--EYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPE 63

Query: 62  MNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           M+G    +Q+++ P      V+ L+   Q    +   + GAD Y  K    E L   +Q+
Sbjct: 64  MDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQS 123

Query: 122 THGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDGCSNADI 181
                       A  +L H             + +    LT  E +V+QL+  G +N +I
Sbjct: 124 C--------LRQADRLLQH--NNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREI 173

Query: 182 AEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGL 220
           A+ L ++  TV++HV N+LNK   ++RT+ A  AI+  +
Sbjct: 174 ADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 33/217 (15%)

Query: 4   IRIALIEDEDLIRQGLQDALT-MEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDM 62
           +RI LIED++LI  GLQ  LT +  + +W     +G+ G+  +     D V++D+ LP +
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWF---TDGKTGMAALTSAPYDAVVLDLTLPKL 57

Query: 63  NGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKD-------SRTELL 115
           +G++V QQ +    +    V+ILT  D  +  +    +GAD Y  K        +R + L
Sbjct: 58  DGLEVLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQAL 115

Query: 116 IEAIQATHGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDG 175
           I      H             V+                 +    LT RE ++L+L +  
Sbjct: 116 IRRRYGYH-----------HSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLN 164

Query: 176 ----CSNADIAEKL-----YITVGTVKTHVRNILNKL 203
                S + I EKL      I+ G +  H+ N+  KL
Sbjct: 165 KDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 12/222 (5%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           RI +I+D+  I   +  ++ +E +   V +A +G  G  +  Q +PD++++D+ LP ++G
Sbjct: 3   RILIIDDDPAISDLV--SINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATHG 124
             V Q+L++        V++LT   Q +  +  F +GAD Y  K    E ++  ++A   
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 125 GFAWIDPAIARI-VLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIV----DGCSNA 179
               I  A     +L                   S  LT  E E+L  ++       S +
Sbjct: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 180 DIAEKLY-----ITVGTVKTHVRNILNKLCANDRTQAAVRAI 216
           DI  +++       + T++ H+R++  KL  N R    ++ +
Sbjct: 181 DILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTV 222


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGI 65
           I ++ED+  I Q +++ L  E  F  +    +G  GL + Q+  PD++++D+ LP ++G+
Sbjct: 14  ILIVEDDQEIAQLIRETLERE-QFTCI-VTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 66  DVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           +V  ++++ P +    +++LT   +E   +   S GAD Y +K      L+  ++A
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRA 127


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           +I ++EDE  IR+ +  AL +   +  V EA++ +  +  +++  P ++++D  LP  +G
Sbjct: 4   KILIVEDECAIREMI--ALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSG 60

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           I   Q +KK        +++LT    EE  +A  +AGAD Y  K    ++L+  I+A
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGR--LGLVMMQQTRPDVVIIDIGLPDMN 63
           I ++EDE +IR+ + + L++E +++ + EA NG   LGL+   +  PD++I D+ +P+M+
Sbjct: 4   ILVVEDEAIIRELIGETLSLE-NYK-ILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           G  +   L+K         + LT     +      ++GAD Y +K  + E L+ A+ +
Sbjct: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 52.8 bits (125), Expect = 9e-10
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 161 LTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGL 220
           L+ERE E++ L+  G  + DIAE+L+I+  TVK HV   L+KL A +R QA  +A   G 
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368

Query: 221 V 221
           +
Sbjct: 369 I 369


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 1   MEKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP 60
           +E   I L+ED ++ R+   D LT +     V  A NG+  L ++     D +++DI +P
Sbjct: 715 LEGASILLVEDNEINREFAHDLLTSKGLRVQV--ANNGQEALTLLTSNTYDAILMDIQMP 772

Query: 61  DMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
            +NG D T+ +++   +    ++ +T N        A  AG + +  K  + +LL + + 
Sbjct: 773 MLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLA 832

Query: 121 ATHGGFAWIDPAIAR 135
                  WI P  AR
Sbjct: 833 ------HWIPPNSAR 841


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 37  NGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLA 96
           +G   L  + Q +PD++++D+ +P M+G++V  +LK+ P      V+ LT +++++ +L 
Sbjct: 49  SGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQ 108

Query: 97  AFSAGADAYCMKD-SRTELL 115
           AF+ GA  Y  K  S  ELL
Sbjct: 109 AFAKGAVDYVTKPFSPPELL 128



 Score = 40.0 bits (92), Expect = 6e-06
 Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 8   LIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDV 67
           L+ +++LI Q +   L  +  +  V    NG+  L  + +   DVV++D+ +P+M+G+  
Sbjct: 743 LLAEDNLINQQVAKLLLKKLGYP-VDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 68  TQQLKKGPLNCQCR-VVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
           T+ +++     +   ++ +T    E       ++G + Y  K  R E L +A+Q
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 32  VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQE 91
           V EA NG + + + +   P V+++D+ +P ++G   TQ++K  P      ++ LT +  E
Sbjct: 444 VQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFE 503

Query: 92  ETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123
                  SAG D +  K  R E LI A+ A H
Sbjct: 504 GERAEILSAGCDDFLSKPFRPEELI-ALLAKH 534


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           R+ ++E+E+ + + ++  L  E  ++ V  A +G  G    Q+  PD++I++  LP M+G
Sbjct: 4   RVLVVEEEEKLARFMELELKYE-GYD-VSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108
           +++ ++L++  +  +  ++++T  D  E  +    AGAD Y +K
Sbjct: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVK 103


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           +I +++D+ + RQ L   L   P    + EA+NG+  + + +   P ++ +D+ +P M+G
Sbjct: 631 KILVVDDKSVNRQLLIKLLA--PFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDG 688

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATHG 124
            + T+ +K         VV LT +  EE      SAG D +  K  R   + +++   H 
Sbjct: 689 YEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSL-TKHL 747

Query: 125 GFAWI 129
           G  ++
Sbjct: 748 GVTYV 752


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           +I +++D+  +R  L+  L  E     V  A NG   L    + +P+VV++D  +P M+G
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEG--HRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
               Q L K   N    V+++T  D E +V  AF AGA  Y  K     +L + ++
Sbjct: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVK 126


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQ-------QTRPDVVIIDI 57
           RI ++EDE  IR+ +  +L  E  +E V    +GR  L ++Q       Q   D++I+DI
Sbjct: 32  RILVVEDEVSIRETIVLSL-QEEGYE-VYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89

Query: 58  GLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIE 117
            LP +NG+DV + L+ G  N    ++I++    E   +     GAD Y  K    + L+ 
Sbjct: 90  MLPQVNGLDVCRSLRFGGDNTP--ILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVA 147

Query: 118 AIQA 121
             +A
Sbjct: 148 RCRA 151


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 161 LTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGL 220
           L++RELE+L L+  G +N +++E+L I+  TV  HV NIL K    +R +    A++ G 
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWGK 71

Query: 221 V 221
           V
Sbjct: 72  V 72


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGI 65
           I L++DE+ + + L  AL  +     +  A  G+ GL M    + D++I+D  LP ++G+
Sbjct: 4   ILLVDDENALTEPLSKALGHQG--HTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 66  DVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
           ++ +Q++   L     V+ LT  D  +  +A   AG D Y +K      L+  ++A
Sbjct: 62  EICRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRA 115


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 6   IALIEDEDLIRQGLQDALTMEPSFEW-VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           + L+ED    R+ +   L       W V  A +G   L  +Q   PD+V++DI +P MNG
Sbjct: 30  VLLVEDSSSQREMISGILK---DHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
            +V +++K  P      V++ +   +E         GADAY  K  +   L+  I+
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 5    RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
            RI L+ED + I Q +   L  +  F  V  AANG + L  +      +V++D+ +P+M+G
Sbjct: 926  RILLVEDNE-INQEVAAELLRDVGFN-VDVAANGLIALERLNNNAYALVLMDMQMPEMDG 983

Query: 65   IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELL 115
            I+ T  +++ P   Q  +V +T N  +        AG + +  K    E L
Sbjct: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 1   MEKIRIALIEDEDLIRQGLQDALT-MEPSFEWV--GEAANGRLGLVMMQQTRPDVVIIDI 57
           +E  R+ +++D D  R  ++D L  M+   E V  G  A   L     +     +V ID 
Sbjct: 768 LEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDW 827

Query: 58  GLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIE 117
            +P+M+G++V ++LK   LN Q  + I+T   +EE  + A S G D   +K     +L +
Sbjct: 828 QMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFD 887

Query: 118 AIQATHG 124
           ++    G
Sbjct: 888 SLARVLG 894


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64
           ++ L+ED ++ R  L   L +   +E V  A +G   + M     P ++++D+ LP ++G
Sbjct: 6   KVLLVEDNEMNRDMLSRRL-IRKGYEVV-IAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121
              T+Q+K  P      ++ LT +        A +AG D Y  K    + L++ ++A
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 8   LIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDV 67
           +++DE  IR+ L+  L+M   +E V  AA+G   +    ++ PD+V++D+ +P ++G  V
Sbjct: 1   MVDDEASIRRILETRLSMI-GYEVV-TAADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58

Query: 68  TQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108
            Q+L+K        +++LT        +     GAD Y +K
Sbjct: 59  CQELRK---ESDIPIIMLTALGDVADRITGLELGADDYVVK 96


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 32  VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQE 91
           V    +G++ L  +Q  RPD++++DI +PDM+G  V + +KK        ++ ++     
Sbjct: 35  VRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALGDT 94

Query: 92  ETVLAAFSAGADAYCMKDSRTELLIEAIQ 120
              + AF  G   Y  K  + E ++  I+
Sbjct: 95  FDKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 43.5 bits (101), Expect = 6e-07
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 19/223 (8%)

Query: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63
           +RI L+ED+  + + L +AL+ +     V  A +  L      +   D+VI+D+ LP+++
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQ--LYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA-T 122
           GI + Q+ +    +    ++++T  D     +    AGAD Y +K      L   ++A  
Sbjct: 59  GITLCQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116

Query: 123 HGGFAWIDPAIARIVLAHXXXXXXXXXXXXXRTSLSYGLTERELEVLQLIVDG----CSN 178
             G A   P     VL                 +    LT +E  +L+L++       S 
Sbjct: 117 RRGCATCQP-----VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSR 171

Query: 179 ADIAEKLYITVG-----TVKTHVRNILNKLCANDRTQAAVRAI 216
           + I + ++         TVK HVR++  KL +   +  A+  +
Sbjct: 172 SMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETV 214


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 43.1 bits (100), Expect = 7e-07
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP-DMN 63
           +I ++EDE L+ Q +   L  +  +E    A++G   L  + +  PD+V++DI +  +++
Sbjct: 4   KILIVEDERLVAQHIAQLLKSD-GYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62

Query: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAI 119
           GI+V +++K         +V LT     ET+  A       Y +K  R E L+  +
Sbjct: 63  GIEVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 40.0 bits (92), Expect = 6e-06
 Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 8    LIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDV 67
            L+ +++L+ Q +   +     +  V  A NG+  +  +++   D+V++D+ +P M+GI  
Sbjct: 1193 LLAEDNLVNQKVAHQMLNNLGYP-VAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251

Query: 68   TQQLKKG-PLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQAT 122
             + +++  PL  Q R+V +T N           AG D Y  K      L + +Q T
Sbjct: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDT 1307


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,798
Number of Sequences: 78
Number of extensions: 656
Number of successful extensions: 57
Number of sequences better than 1.0e-05: 30
Number of HSP's better than  0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 33
length of query: 222
length of database: 48,235
effective HSP length: 60
effective length of query: 162
effective length of database: 43,555
effective search space:  7055910
effective search space used:  7055910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000727 sll1120 
         (1200 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000727 sll1120                                           1778   0.0  

>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 1778 bits (4604), Expect = 0.0
 Identities = 959/1200 (79%), Positives = 959/1200 (79%)

Query: 1    MVYVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAE 60
            MVYVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAE
Sbjct: 1    MVYVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAE 60

Query: 61   RLPDLVNNTFKGNRGSSEASVSVTFELHDGENLSEPXXXXXXXXXXXKISKEWTVTRRLK 120
            RLPDLVNNTFKGNRGSSEASVSVTFELHDGENLSEP           KISKEWTVTRRLK
Sbjct: 61   RLPDLVNNTFKGNRGSSEASVSVTFELHDGENLSEPGANHNGNGNGAKISKEWTVTRRLK 120

Query: 121  VTKGGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQGDVTRIITMNSKERREII 180
            VTKGGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQGDVTRIITMNSKERREII
Sbjct: 121  VTKGGNYSSNYYINGETATVTELHEQLNELRIYPEGYNIVLQGDVTRIITMNSKERREII 180

Query: 181  DELAGVAEFDRKIVKTKETLTEVQDREERCQIIATELERTLERLAADRQKAEKYQALRQQ 240
            DELAGVAEFDRKIVKTKETLTEVQDREERCQIIATELERTLERLAADRQKAEKYQALRQQ
Sbjct: 181  DELAGVAEFDRKIVKTKETLTEVQDREERCQIIATELERTLERLAADRQKAEKYQALRQQ 240

Query: 241  VQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQRSQAIQTQQTELEKLNA 300
            VQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQRSQAIQTQQTELEKLNA
Sbjct: 241  VQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQSQQIQQALDQRSQAIQTQQTELEKLNA 300

Query: 301  QVKXXXXXXXXXXXXXXXXXXXXRDQLQQRYNDGDRQITNHQQQVGXXXXXXXXXXXXXX 360
            QVK                    RDQLQQRYNDGDRQITNHQQQVG              
Sbjct: 301  QVKALGEEEQLAVAAQLATQKAQRDQLQQRYNDGDRQITNHQQQVGQIQAEISQSQQQFL 360

Query: 361  XXXXEKSFHNTQTLPQLEXXXXXXXXXXXXXXXXXXXIASASEAWVQEQTQLSRTVNQLQ 420
                EKSFHNTQTLPQLE                   IASASEAWVQEQTQLSRTVNQLQ
Sbjct: 361  HIQQEKSFHNTQTLPQLEAAVQTSQQQLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQ 420

Query: 421  DELIPXXXXXXXXXXXXXXXXXXXXXXXXXXXKVSVELEEKQFAQGQFNFQGEALTSQIQ 480
            DELIP                           KVSVELEEKQFAQGQFNFQGEALTSQIQ
Sbjct: 421  DELIPQRSQLAQLEERQQQLLTNLAELTPLLTKVSVELEEKQFAQGQFNFQGEALTSQIQ 480

Query: 481  TLASDLAQLEQERSLLQETQTXXXXXXXXXXXXXXXXXAASQAQQEVQGTYATKVILQSD 540
            TLASDLAQLEQERSLLQETQT                 AASQAQQEVQGTYATKVILQSD
Sbjct: 481  TLASDLAQLEQERSLLQETQTRLLKEQQEKQRQLDKLEAASQAQQEVQGTYATKVILQSD 540

Query: 541  LPGVCGLVAQLGQVEPQYQLALEIAAGGRLGFLVVEDDGVAAAGIEILKQAKAGRATFLP 600
            LPGVCGLVAQLGQVEPQYQLALEIAAGGRLGFLVVEDDGVAAAGIEILKQAKAGRATFLP
Sbjct: 541  LPGVCGLVAQLGQVEPQYQLALEIAAGGRLGFLVVEDDGVAAAGIEILKQAKAGRATFLP 600

Query: 601  LNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFGNTIVFDTLVNARNHLGK 660
            LNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFGNTIVFDTLVNARNHLGK
Sbjct: 601  LNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFGNTIVFDTLVNARNHLGK 660

Query: 661  HRIVTLEGDLLEASGAMSGGSRNQRSGLRFGTMVSEDTAEVKQLRQRLQDIQQVQGRNEE 720
            HRIVTLEGDLLEASGAMSGGSRNQRSGLRFGTMVSEDTAEVKQLRQRLQDIQQVQGRNEE
Sbjct: 661  HRIVTLEGDLLEASGAMSGGSRNQRSGLRFGTMVSEDTAEVKQLRQRLQDIQQVQGRNEE 720

Query: 721  LLLERTVRSXXXXXXXXXXXXXXXXXXXHGEQTERDIARXXXXXXXXXXXXXXXXXXXXX 780
            LLLERTVRS                   HGEQTERDIAR                     
Sbjct: 721  LLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARLSQQQTQINQQQINQQQKLAE 780

Query: 781  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVEAEYQRQLQALR 840
                                                         RTVEAEYQRQLQALR
Sbjct: 781  LQQNLALLQQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQIQIRTVEAEYQRQLQALR 840

Query: 841  QGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEA 900
            QGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEA
Sbjct: 841  QGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEA 900

Query: 901  QLAKLSEKLGSTKQERDRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 960
            QLAKLSEKLGSTKQERDRL                                         
Sbjct: 901  QLAKLSEKLGSTKQERDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQENLTQLQTQLEA 960

Query: 961  XXXDLPDPWPEIPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKT 1020
               DLPDPWPEIPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKT
Sbjct: 961  LEQDLPDPWPEIPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKT 1020

Query: 1021 EARLGELSEKLQTIAGERTELLLRIENFTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGY 1080
            EARLGELSEKLQTIAGERTELLLRIENFTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGY
Sbjct: 1021 EARLGELSEKLQTIAGERTELLLRIENFTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGY 1080

Query: 1081 LQLDDAEDPFNGGLNLVAHPKGKPVRRLSSMSGGEKSLTALSFIFALQRYRPSPFYGFDE 1140
            LQLDDAEDPFNGGLNLVAHPKGKPVRRLSSMSGGEKSLTALSFIFALQRYRPSPFYGFDE
Sbjct: 1081 LQLDDAEDPFNGGLNLVAHPKGKPVRRLSSMSGGEKSLTALSFIFALQRYRPSPFYGFDE 1140

Query: 1141 VDMFLDGANVEKLSKMVRKQAQQAQFIVVSLRRPMIEAAERTIGVTQARGAHTQVLGIKL 1200
            VDMFLDGANVEKLSKMVRKQAQQAQFIVVSLRRPMIEAAERTIGVTQARGAHTQVLGIKL
Sbjct: 1141 VDMFLDGANVEKLSKMVRKQAQQAQFIVVSLRRPMIEAAERTIGVTQARGAHTQVLGIKL 1200


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.315    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,521
Number of Sequences: 78
Number of extensions: 3878
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 12
length of query: 1200
length of database: 48,235
effective HSP length: 73
effective length of query: 1127
effective length of database: 42,541
effective search space: 47943707
effective search space used: 47943707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000800 sll1228 
         (633 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000800 sll1228                                           1209   0.0  
SYNE-PCC-01-001132 sll1672                                            332   2e-93
SYNE-PCC-01-002879 slr2104                                            216   2e-58
SYNE-PCC-01-002873 slr2098                                            186   2e-49
SYNE-PCC-01-002617 slr1759                                            167   7e-44
SYNE-PCC-01-000295 sll0474                                            165   3e-43
SYNE-PCC-01-000891 sll1353                                            156   2e-40
SYNE-PCC-01-001294 sll1888                                            152   4e-39
SYNE-PCC-01-001280 sll1871                                            148   6e-38
SYNE-PCC-01-002778 slr1969                                            140   2e-35
SYNE-PCC-01-001306 sll1905                                            133   2e-33
SYNE-PCC-01-001509 slr0210                                            132   2e-33
SYNE-PCC-01-001517 slr0222                                             94   1e-21
SYNE-PCC-01-000985 sll1475                                             94   2e-21
SYNE-PCC-01-001690 slr0473                                             86   4e-19
SYNE-PCC-01-002788 slr1982                                             85   6e-19
SYNE-PCC-01-000414 sll0649                                             70   3e-14
SYNE-PCC-01-002635 slr1783                                             66   3e-13
SYNE-PCC-01-002731 slr1909                                             64   1e-12
SYNE-PCC-01-001133 sll1673                                             64   2e-12
SYNE-PCC-01-001461 slr0115                                             63   2e-12
SYNE-PCC-01-002033 slr0947                                             59   3e-11
SYNE-PCC-01-001575 slr0312                                             55   6e-10
SYNE-PCC-01-002086 slr1042                                             55   8e-10
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   55   8e-10
SYNE-PCC-01-002489 slr1588                                             54   1e-09
SYNE-PCC-01-002618 slr1760                                             54   1e-09
SYNE-PCC-01-001437 slr0081                                             53   3e-09
SYNE-PCC-01-000518 sll0789                                             52   7e-09
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    52   7e-09
SYNE-PCC-01-000608 sll0921                                             51   1e-08
SYNE-PCC-01-002672 slr1837                                             49   4e-08
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    49   4e-08
SYNE-PCC-01-000523 sll0797                                             49   5e-08
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    48   1e-07
SYNE-PCC-01-000242 sll0396                                             47   1e-07
SYNE-PCC-01-001160 sll1708                                             46   3e-07

>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 1209 bits (3127), Expect = 0.0
 Identities = 610/633 (96%), Positives = 610/633 (96%)

Query: 1   MRFAIEQLGLLFGCQRVHVIYHDPAKDCLHMAEEWCAVGIAPRLSTFQGVPVATYPWLWA 60
           MRFAIEQLGLLFGCQRVHVIYHDPAKDCLHMAEEWCAVGIAPRLSTFQGVPVATYPWLWA
Sbjct: 1   MRFAIEQLGLLFGCQRVHVIYHDPAKDCLHMAEEWCAVGIAPRLSTFQGVPVATYPWLWA 60

Query: 61  NLQDSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYG 120
           NLQDSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYG
Sbjct: 61  NLQDSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYG 120

Query: 121 WNPEELNLAKLVGQFLAIAQARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNA 180
           WNPEELNLAKLVGQFLAIAQARHQAETTLTQ           KTEFLASISHELRTPLNA
Sbjct: 121 WNPEELNLAKLVGQFLAIAQARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNA 180

Query: 181 IIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHR 240
           IIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHR
Sbjct: 181 IIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHR 240

Query: 241 LLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVT 300
           LLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVT
Sbjct: 241 LLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVT 300

Query: 301 LKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLG 360
           LKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLG
Sbjct: 301 LKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLG 360

Query: 361 LPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKV 420
           LPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKV
Sbjct: 361 LPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKV 420

Query: 421 LVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTT 480
           LVVDDRPE            GFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTT
Sbjct: 421 LVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTT 480

Query: 481 QKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALP 540
           QKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALP
Sbjct: 481 QKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALP 540

Query: 541 SQGQPPASPLRPFPVITAPSLSEQLAKTPQSWRQKMAKMALECNDDDLITLVESLPTLSP 600
           SQGQPPASPLRPFPVITAPSLSEQLAKTPQSWRQKMAKMALECNDDDLITLVESLPTLSP
Sbjct: 541 SQGQPPASPLRPFPVITAPSLSEQLAKTPQSWRQKMAKMALECNDDDLITLVESLPTLSP 600

Query: 601 SLAHLLATWAREYRFEQIFLVVESSFGAVTLAG 633
           SLAHLLATWAREYRFEQIFLVVESSFGAVTLAG
Sbjct: 601 SLAHLLATWAREYRFEQIFLVVESSFGAVTLAG 633


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  332 bits (851), Expect = 2e-93
 Identities = 194/491 (39%), Positives = 274/491 (55%), Gaps = 16/491 (3%)

Query: 144 QAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHR-PTLD 202
           Q +  L +           K+ F+A++SHELR+PLNAIIGFSQL+ R  +L   +     
Sbjct: 346 QKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAG 405

Query: 203 IINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKV 262
           II RSGE+LL LIN+IL+ SKIEAG+T LN    D + LLD+L+ +  L+A  + + L  
Sbjct: 406 IIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIF 465

Query: 263 ERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTA-------PQTDEGQ 315
            R  ++P ++  D  KLRQ+L+NLL+NAIKFT +G V L      A       P+T    
Sbjct: 466 IRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEP 525

Query: 316 GASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQI 375
               WL F + DTG GI+  E+  LF  F+QTE+G  + +G GLGL I+++F++LMGG I
Sbjct: 526 KNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDI 585

Query: 376 QVRSKVDQGSAFFFAIPV---QVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPEXXXX 432
            V S VDQG+ F F+I V   ++  + +P      + L P  Q   K+LVVDD+      
Sbjct: 586 NVSSVVDQGTTFSFSILVDLGEITLSREPNSAKKVLALTP-GQPVYKILVVDDKSVNRQL 644

Query: 433 XXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHT 492
                   GF ++EA NG+ AIALWESW P +I MDM+MPV+DG   T+ IK   +G  T
Sbjct: 645 LIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNAT 704

Query: 493 IIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQPPASPLRP 552
            ++ALTAS  E E+A +LSAGCDDFL KPFR   +   L KHL V    +  P  +    
Sbjct: 705 AVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSLTKHLGVTYVYESAPNKNDNHE 764

Query: 553 FPVITAPSLSEQLAKTPQSWRQKMAKMALECNDDDLITLVESLPTLSPSLAHLLATWARE 612
              +      E      Q W  +++   LE + + ++ L+  +P     L   L    R 
Sbjct: 765 DTALK----PESFLIMSQDWLTQLSHYLLEADTEQVMKLIAEIPASESELEQNLTKLVRR 820

Query: 613 YRFEQIFLVVE 623
           + FE+I  ++E
Sbjct: 821 FEFEKILDLIE 831


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  216 bits (549), Expect = 2e-58
 Identities = 148/440 (33%), Positives = 227/440 (51%), Gaps = 20/440 (4%)

Query: 124 EELNLAKLVGQFLAIAQARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIG 183
           E LN  KL  +     Q    ++ +L +           K+EFLA++SHE+RTP+NAIIG
Sbjct: 420 EHLN-EKLEQRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIG 478

Query: 184 FSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLD 243
            S+L+ +    +  R  L  +  +GE LL +IN+IL+ SK+EAG+  L +K      ++ 
Sbjct: 479 MSELVLQTDLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMG 538

Query: 244 NLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKV 303
           NL ++  ++A+ K L L     P +P  +  D  +L Q+LINL  NA+KFT QG +T++ 
Sbjct: 539 NLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRG 598

Query: 304 KCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGL-KSCQGNGLGLP 362
           + L   +T+  Q     L F V+DTG G+   +  +LF  F Q ET   +   G GLGL 
Sbjct: 599 QLL---KTENEQTK---LQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLA 652

Query: 363 ISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPKPTPE-----------TSAVTLP 411
           IS+   +LMGG I + S V QGS F F + +   A+P    +             +VT  
Sbjct: 653 ISKSLTELMGGDIWLESVVGQGSTFHFTVCLGT-ASPAVAQDYLVSRVSILEAKPSVTQA 711

Query: 412 PLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQM 471
                   +L+V+D               G  VQ A NG+ A+ L  S     ILMD+QM
Sbjct: 712 ITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQM 771

Query: 472 PVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALL 531
           P+L+G   T+ I+     ++  IIA+TA+A  G++ + L AG +D L+KP +P+ L   L
Sbjct: 772 PMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831

Query: 532 AKHLAVALPSQGQPPASPLR 551
           A  +      + + P+S L+
Sbjct: 832 AHWIPPNSAREKKNPSSNLK 851


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  186 bits (471), Expect = 2e-49
 Identities = 130/397 (32%), Positives = 192/397 (48%), Gaps = 18/397 (4%)

Query: 145 AETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDII 204
           AE  + +           K +FLA++SHE+RTP+NA+IG + L  +       R  L  I
Sbjct: 509 AEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKI 568

Query: 205 NRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVER 264
             SG+HLL +INDIL+ SKIEAG+  +     D  ++LDN+  L   +A  K L L  + 
Sbjct: 569 RFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDI 628

Query: 265 SPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFL 324
              +P     D  +L Q+LIN   NA+KFT QG +T+ V+        E +   + L+  
Sbjct: 629 DRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVR------LQEYRDQDVVLYLA 682

Query: 325 VSDTGPGIAAHEMDELFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQ 383
           V DTG GI    +  LF  F Q ++   ++  G GLGL I ++  +LMGG++ V S+  Q
Sbjct: 683 VKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQ 742

Query: 384 GSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFV 443
           GS F+  + +Q        P    ++    D   ++VLVVDD                FV
Sbjct: 743 GSTFWAKVCLQ---KSNVIPHRLVLS---KDLEGKRVLVVDDNDHARLVMKDLLEQMKFV 796

Query: 444 VQEAENGEMAI-----ALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALT 498
           V+  E+G  A+     A  E+    ++ +D QMP +DG    +++KA        I  +T
Sbjct: 797 VETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVT 856

Query: 499 ASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHL 535
           A   E    +  S G DD L KP  P  L   LA+ L
Sbjct: 857 AYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVL 893



 Score = 71.6 bits (174), Expect = 7e-15
 Identities = 42/122 (34%), Positives = 62/122 (50%)

Query: 419  KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
            ++L+V+D               GF V  A NG +A+    +    ++LMDMQMP +DG  
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 479  TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVA 538
             T  I+ +P+     I+A+TA+  +G+R   L AG +D L KP  PEEL   L   + V 
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIPVD 1045

Query: 539  LP 540
             P
Sbjct: 1046 SP 1047


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  167 bits (424), Expect = 7e-44
 Identities = 146/488 (29%), Positives = 218/488 (44%), Gaps = 40/488 (8%)

Query: 62   LQDSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYGW 121
            +Q    + V D++Q    +   K   Q   VKS L V      +  G I++        W
Sbjct: 664  IQGDRAMAVVDLDQ-DLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVW 722

Query: 122  NPEELNLAKLVGQFLAIAQARH--------------QAETTLTQXXXXXXXXXXXKTEFL 167
              +E+ L + + + + IA A+               Q    L +           K EFL
Sbjct: 723  TADEIELLEAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFL 782

Query: 168  ASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAG 227
            A +SHE+RTP+N +IG ++LL            +  I +SGE LL +INDIL+ SKIEA 
Sbjct: 783  AMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEAD 842

Query: 228  RTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLL 287
            +  L  +  +   L++ +  +F   A+ K L L     P+ P  I  D  +LRQ+L NL+
Sbjct: 843  KLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLI 902

Query: 288  ANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLH---------FLVSDTGPGIAAHEMD 338
             NA+KFT +G V L VK       D  +     L+         F + DTG GI     D
Sbjct: 903  GNALKFTEKGEVVLTVK---GEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQD 959

Query: 339  ELFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMA 397
             LF  F+Q ++   +   G GLGL ISQ+  Q+MGG + V S+   GS F F I +    
Sbjct: 960  RLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI-LTTAQ 1018

Query: 398  APKPTPETSAVTLPPLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALW 457
            AP      S   +       ++VL+VDD               G V     +GE A+  W
Sbjct: 1019 APALAEADSVQQMK-----GKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALD-W 1072

Query: 458  ESWHPQV--ILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCD 515
             +  P +   ++D+QMP +DG +    ++   QG+   II L++    G  A+ LS    
Sbjct: 1073 FARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAG--ADELSV-FQ 1129

Query: 516  DFLSKPFR 523
              L+KP R
Sbjct: 1130 TVLNKPVR 1137



 Score = 66.2 bits (160), Expect = 3e-13
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 404  ETSAVTLPPLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQ 463
            E +A +L P  Q    +L+ +D               G+ V  A NG+  I   E     
Sbjct: 1180 EDNATSLQPALQ----ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYD 1235

Query: 464  VILMDMQMPVLDGRSTTQKIKAS-PQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPF 522
            ++LMDMQMPV+DG +  + I+ + P  +   I+A+TA+A  G+R E L AG D ++SKP 
Sbjct: 1236 LVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPI 1295

Query: 523  RPEELIALLAKHLAVALPSQGQ 544
               +L  +L    A+    Q +
Sbjct: 1296 SINQLRKVLQDTSALITSPQAR 1317


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  165 bits (418), Expect = 3e-43
 Identities = 106/267 (39%), Positives = 147/267 (55%), Gaps = 6/267 (2%)

Query: 130 KLVGQFLAIAQARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIGFSQLLH 189
           K++G    I + + +AE  L             K EFLA++SHELRTPLN+I+G  + L 
Sbjct: 386 KIIGTIADITEIK-KAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQ 444

Query: 190 RD---PSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQ 246
                P       +L+I+  SG HLL LINDIL++SKIEAGR  L+        L+++  
Sbjct: 445 NQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSL 504

Query: 247 ALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCL 306
              Q  A +KQ+ L  E  P +P+ +  D  +L QVLINLL NAIKFT +GG  +    L
Sbjct: 505 TFVQQFAIQKQINLSSEIIPNLPD-VLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADL 563

Query: 307 TAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGL-KSCQGNGLGLPISQ 365
              Q  E   +   L F V DTG GI A  ++ +F PF Q ++ L +   G GLGL + +
Sbjct: 564 IKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVK 623

Query: 366 KFVQLMGGQIQVRSKVDQGSAFFFAIP 392
           K V+L GG + V SK+++GS F   IP
Sbjct: 624 KIVELHGGSVTVTSKLNEGSRFKITIP 650


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  156 bits (394), Expect = 2e-40
 Identities = 93/255 (36%), Positives = 149/255 (58%), Gaps = 4/255 (1%)

Query: 140 QARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIGFSQLL-HRDPSLAPHR 198
           + R + E  L +           K+EFLA+ISHE+RTP+NAI+GF  LL  +D SL+  +
Sbjct: 577 EERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTK 636

Query: 199 PTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQL 258
             L+ I  S + LL LI+DIL++SKIEAG+  ++ + +D   ++  ++ +F  +A+ K L
Sbjct: 637 KYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSL 696

Query: 259 LLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGAS 318
           LL ++    + + I  D  +LRQ+L NL+ NA+KFT +G V + +  +   Q    QG  
Sbjct: 697 LLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIG-VEGIQV-RSQGTY 754

Query: 319 IWLHFLVSDTGPGIAAHEMDELFVPFAQTE-TGLKSCQGNGLGLPISQKFVQLMGGQIQV 377
           I L   V+DTG GIA  +  ++F  F Q++    +   G GLGL I+++   L+GG+I +
Sbjct: 755 ISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISL 814

Query: 378 RSKVDQGSAFFFAIP 392
            S++ +GS F    P
Sbjct: 815 SSRLGEGSTFILHFP 829


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  152 bits (383), Expect = 4e-39
 Identities = 116/376 (30%), Positives = 180/376 (47%), Gaps = 19/376 (5%)

Query: 4   AIEQLGLLFGCQRVHVIYHDPAKDCLHMAEEWCAVGIAPRLSTFQGVPVATYPWLWANLQ 63
           A++ +G   G  R  ++  D     L +  E+C     P ++ F  + V     +W  L 
Sbjct: 49  AVDSIGSTLGVSRCLLLTKDFQSRHLQIEAEFCQ----PTVTAFAALIVPEESEIWRQL- 103

Query: 64  DSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYG-WN 122
                     EQ  P   +  V  Q + +  + + P +   Q  GY+ +  +    G W+
Sbjct: 104 ---------FEQHQP-ITLYNVQFQGEDLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWH 153

Query: 123 PEELNLAKLVGQFLAIAQARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAII 182
           PE   L + + +    A A       LTQ           K+EFLAS +HELRTPLN II
Sbjct: 154 PETEALLQELAEQTGTAIAHATLYQELTQATKAAEEASRLKSEFLASTTHELRTPLNGII 213

Query: 183 GFSQLLHRD--PSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHR 240
           GF +L+  D   S A     ++   +S   LL LINDIL+++KIEAGR  +  +++D   
Sbjct: 214 GFLRLILDDMADSEAEKHEFVEEAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSE 273

Query: 241 LLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVT 300
           +L   +     +AQ K L   +    + P  +  +   L QV++N++ NAIKFT +GG+T
Sbjct: 274 VLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGIT 333

Query: 301 LKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTE-TGLKSCQGNGL 359
           + V+ +      EG      L   V DTG G++  +  +LF  F Q + +  K+  G GL
Sbjct: 334 VAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGL 393

Query: 360 GLPISQKFVQLMGGQI 375
           GL ISQK V+ MGG++
Sbjct: 394 GLVISQKLVETMGGKV 409


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  148 bits (373), Expect = 6e-38
 Identities = 95/234 (40%), Positives = 135/234 (57%), Gaps = 12/234 (5%)

Query: 163 KTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHR---PTLDIINRSGEHLLELINDIL 219
           K+ FLA++SHELRTPLNAIIG+S++L  +          P LD I RSG+ LL LIND+L
Sbjct: 438 KSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLL 497

Query: 220 EMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKL 279
           ++SKIEAG+  L  +  +   L+  +        +     L+VE S E  E +  D  KL
Sbjct: 498 DISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLESEE-VYGDLIKL 556

Query: 280 RQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDE 339
           RQ ++NLL+NA KFT  G ++  V+     + D       WL F V DTG G+   +M +
Sbjct: 557 RQGILNLLSNASKFTKDGIISFIVEEFKVDEKD-------WLSFQVKDTGIGLTEEQMSK 609

Query: 340 LFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIP 392
           LF PF Q ++   +   G GLGL I++KF Q+MGG I + S++  GS+F   +P
Sbjct: 610 LFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  140 bits (352), Expect = 2e-35
 Identities = 133/488 (27%), Positives = 211/488 (43%), Gaps = 42/488 (8%)

Query: 68  VLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYGWNPEELN 127
           V V D+E     +      LQ   V++ LV P++ + Q+ G +     H    W   E N
Sbjct: 266 VAVSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKN 325

Query: 128 LAKLVGQFLAIAQARH------------------QAETTLTQXXXXXXXXXXXKTEFLAS 169
               +G+ LA+A  +                   +    L             K++F+ +
Sbjct: 326 FLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINN 385

Query: 170 ISHELRTPLNAIIGFSQLLHR----DPSLAPHRPTLDIIN--RSGEHLLELINDILEMSK 223
           ISHELRTPL +IIG S  L R      SL P +    ++N   +G+ LL+ IN I+++S+
Sbjct: 386 ISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQ 445

Query: 224 IEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEV-PEWIKTDGGKLRQV 282
           +E+G+T LN +    H L   +       A ++Q+ L+++    V  +    D  +L Q+
Sbjct: 446 LESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQI 505

Query: 283 LINLLANAIKFT-AQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELF 341
           L  LL NA+KFT A+G V L++        +  Q       F V DTG GI   ++  LF
Sbjct: 506 LTQLLNNALKFTPAEGTVILRI------WKESNQAI-----FQVEDTGIGINEQQLPVLF 554

Query: 342 VPFAQTETGLKS-CQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPK 400
             F        S  +  G+GL ++++ V+L GG I+V S   QG+ F   IP Q    P 
Sbjct: 555 EAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNF--PP 612

Query: 401 PTPETSAVTLPPLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESW 460
            T       L     +N  V+V++   E             + V    +   A+   E  
Sbjct: 613 TTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELL 672

Query: 461 HPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSK 520
            P +I++D     +D    T+ IK S +     +  L+ S    E   +   G DD+L K
Sbjct: 673 QPGLIIVDGDF--VDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLK 730

Query: 521 PFRPEELI 528
           P +PE L+
Sbjct: 731 PLQPELLL 738


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  133 bits (334), Expect = 2e-33
 Identities = 98/290 (33%), Positives = 143/290 (49%), Gaps = 27/290 (9%)

Query: 124 EELNLAKLVGQFLAIAQARHQAETTLTQXXXXXXXXXXXKTEFLASISHELRTPLNAIIG 183
           + L + + + Q LA       A TT  +           K+EFLA++SHE+RTP+NAIIG
Sbjct: 288 QSLEMERRMRQQLAEQNQELVAATTAAEAANRS------KSEFLATMSHEIRTPMNAIIG 341

Query: 184 FSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLD 243
            + LL         +     I  SGE LL LINDIL+ SKIEAG+  L     D  + L+
Sbjct: 342 MTGLLLDTDLTTQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLE 401

Query: 244 NLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKV 303
               +    A++K L L       +P  ++ D  +LRQ+L+NLL+NA+KFT  G V + V
Sbjct: 402 EALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTV 461

Query: 304 KCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGL-KSCQGNGLGLP 362
           + +     D  +G    + F V DTG GIA ++   LF  F+Q  + + +   G GLGL 
Sbjct: 462 EVV---DHDAAKG-EYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLA 517

Query: 363 ISQKFVQLMGGQI----------------QVRSKVDQGSAFFFAIPVQVM 396
           I  +   LMGG I                Q+     +GS F+F + + V+
Sbjct: 518 ICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFTVNLTVL 567



 Score = 69.3 bits (168), Expect = 3e-14
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 374 QIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLP--PLDQYNQKVLVVDDRPEXXX 431
           Q  ++S ++        + V     P     T A++ P  P    N  +L+ +D      
Sbjct: 694 QAWIKSPINPDELENTLVDVLGQTEPPTLVSTEAISGPLFPYSSSNLTILLAEDNLINQQ 753

Query: 432 XXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASP-QGQ 490
                    G+ V    NG+ A++        V+LMD++MP +DG + T+ I+ S  + +
Sbjct: 754 VAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSE 813

Query: 491 HTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQ 544
              IIA+TA + EG+R   L++G +D++SKP R E L   L +  A AL S  Q
Sbjct: 814 RPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQAL-QVAATALQSTSQ 866



 Score = 65.5 bits (158), Expect = 5e-13
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 411 PPLDQYNQK---VLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILM 467
           PP+  +  +   +LVVDD  E            G+      +G  A+       P +IL+
Sbjct: 8   PPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILL 67

Query: 468 DMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEEL 527
           D+ MP +DG     ++K  PQ +   +I LTAS  + +  +  + G  D+++KPF P EL
Sbjct: 68  DLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127

Query: 528 IALLAKHL 535
           +A +  HL
Sbjct: 128 LARVKTHL 135


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  132 bits (333), Expect = 2e-33
 Identities = 105/302 (34%), Positives = 152/302 (50%), Gaps = 21/302 (6%)

Query: 98  VPMVKDAQVLGYISMVHLHDNYGWNPEELNLAKLVGQFLAIAQARHQAETTLTQXXXXXX 157
           +P+ +  Q +G I +V  H    W  E+    + VG      Q   ++ET   Q      
Sbjct: 124 LPVFQQNQYVGGICLVWPHSQ--WRLEQYLFLQEVGNVFTY-QYHGESETISPQKSFNGG 180

Query: 158 XXXXXKTEFLASISHELRTPLNAIIGFSQLLHRD--PSLAP--HRPTLDIINRSGEHLLE 213
                 T  L+ I HE RTPL AIIGF+++L  +    L P  H+     +N S EHLL 
Sbjct: 181 DRHTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLN-SAEHLLS 239

Query: 214 LINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIK 273
           L+ND L++SKI+A    L  + +    L   + ++ Q +A+EKQL L +     V ++  
Sbjct: 240 LVNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGV-DFCY 298

Query: 274 TDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIA 333
            D  + +Q+LINLL+N +KFT +G VTL VK      TD+       L F V DTG GI 
Sbjct: 299 VDQRRWKQILINLLSNGVKFTPKGSVTLAVKA-----TDKA------LIFSVIDTGIGID 347

Query: 334 AHEMDELFVPFAQTETGLKSCQ-GNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIP 392
             +  +LF PF Q        + G GLGL +S++  QL GG IQ+ S    GS F   +P
Sbjct: 348 PEDQRDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407

Query: 393 VQ 394
           ++
Sbjct: 408 LK 409


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 94.4 bits (233), Expect = 1e-21
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 19/236 (8%)

Query: 163  KTEFLASISHELRTPLNAIIGFSQLLHR---DPSLAPHRPTLDIINRSGEHLLELINDIL 219
            K++F+  +SHE RTPL +IIGF +LL +     S    +  ++ I  S + L +LI+D+L
Sbjct: 940  KSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVL 999

Query: 220  EMSKIEAGRTTLNEKIIDCHRLLDNLQALFQL-RAQEKQLLLKVERSPEVPEWIKTDGGK 278
             +S+ +A +  +    I+   L ++L   F      E    L     P+  E    D   
Sbjct: 1000 SISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPD--EHSLVDVRL 1057

Query: 279  LRQVLINLLANAIKFTAQGG-VTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEM 337
            LR +L N+L+NAIK++A G  +TL +        DE       L F V D G GI   + 
Sbjct: 1058 LRHILENILSNAIKYSAPGSTITLDI------SKDEEH-----LLFQVRDEGIGIPLQDQ 1106

Query: 338  DELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPV 393
            ++LF  F +  + +    G GLGL I +++V+  GG I+V S   +G+     +P+
Sbjct: 1107 EKLFEAFHRA-SNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161



 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           KVL+VDD+ E               +  A +G+ AIA   +    ++++  +M  LDG +
Sbjct: 8   KVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGLN 67

Query: 479 TTQKIKASPQGQHTIIIALT-ASAFEGERAEILSAGCDDFLSKP 521
           T + +++ P  + T II L          AEI   G  DFL++P
Sbjct: 68  TAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQP 111


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 93.6 bits (231), Expect = 2e-21
 Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 17/227 (7%)

Query: 163 KTEFLASISHELRTPLNAIIGFSQLLHRDPS--LAPHRPTLDI--INRSGEHLLELINDI 218
           KT F +  SHE RTPL+  +  +QLL       L P + + ++  I  S +++++L++DI
Sbjct: 69  KTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDI 128

Query: 219 LEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGK 278
           L +++ EAG+   N   +D   L        QL   ++     +  + +    +  D   
Sbjct: 129 LIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV--DERL 186

Query: 279 LRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMD 338
           +R +L NLL+NAIK++  GG   ++K   +  +++       + F V+D G GI+  +  
Sbjct: 187 VRSILSNLLSNAIKYSPGGG---QIKIALSLDSEQ-------IIFEVTDQGIGISPEDQK 236

Query: 339 ELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGS 385
           ++F PF + +  +++  G GLGL +++K V L  G I ++S VDQG+
Sbjct: 237 QIFEPFHRGKN-VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGT 282


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 85.5 bits (210), Expect = 4e-19
 Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 19/232 (8%)

Query: 165 EFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRS--GEHLLE-LINDILEM 221
           +F    SH+L+ PLN +  + QLL    S A      D I+ +  G  L++ LI+DIL  
Sbjct: 531 KFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTY 590

Query: 222 SKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQ 281
           +K++     L     D   ++D   A  + R +E    ++V   P V      D  +L Q
Sbjct: 591 AKVDTQYAQLT--FTDVQEVVDKALANLKQRIEESGAEIEVGSMPAV----MADQIQLMQ 644

Query: 282 VLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELF 341
           V  NL+AN IKF   G  + K+K     Q D       W+ F V D G GI     + +F
Sbjct: 645 VFQNLIANGIKFA--GDKSPKIKIWGDRQEDA------WV-FAVQDNGIGIDPQFFERIF 695

Query: 342 VPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPV 393
           V F +  T     +G G+GL I +K ++   GQI + S   +GS F+F+IP+
Sbjct: 696 VIFQRLHTR-DEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSIPI 746


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 85.1 bits (209), Expect = 6e-19
 Identities = 44/110 (40%), Positives = 64/110 (58%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           KVL+V+D               G+ V  A +GE A+ +  S  PQ+ILMDM +P++DG +
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELI 528
            T++IK  P G H  IIALTA A   +R   ++AGCDD+ +KP   + L+
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLL 115


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 69.7 bits (169), Expect = 3e-14
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 420 VLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479
           +L+V+D  E             F      +GE  + +++   P +I++D+ +P LDG   
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVAL 539
             +I+  P  +   I+ LTA   E +R   LS G DD+L KPF P EL+A +   L   L
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 540 PSQGQP 545
             QGQP
Sbjct: 134 -RQGQP 138


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 66.2 bits (160), Expect = 3e-13
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 420 VLVVDDRPEXXXXXXXXXXXXG-FVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           +L+VDD P             G F V  A N   A    +   P +++ D+ MP +DG  
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLA 536
             QK++   + Q   ++ LTA    G+R +    GCD FLSKPF P+EL A++   LA
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 64.3 bits (155), Expect = 1e-12
 Identities = 35/113 (30%), Positives = 58/113 (51%)

Query: 417 NQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476
           N  +L+VDD P             G+ V  A NG  A+ L  +  P +I+ D+ MP +DG
Sbjct: 7   NYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDG 66

Query: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
            +  ++++ +P      ++ L+A      R + L+ G D +++KPF PEEL A
Sbjct: 67  YAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAA 119


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 33/116 (28%), Positives = 60/116 (51%)

Query: 414 DQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPV 473
           D+    +L+VDD P             G+ V+   +G+MA+   +   P +IL+D++MP 
Sbjct: 5   DEKKGNILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPD 64

Query: 474 LDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
           +DG    + IK   + Q   II ++A     ++ +    G  D+++KPF+ EE++A
Sbjct: 65  MDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVA 120


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 63.2 bits (152), Expect = 2e-12
 Identities = 31/111 (27%), Positives = 59/111 (53%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           ++L++DD P             G+ VQ+A +G    AL     P +I++D+ +P +DG +
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
             Q+++   +     ++ LTA     ++ +   +G DD+L+KPF  EE++A
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLA 113


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 59.3 bits (142), Expect = 3e-11
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 422 VVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQ 481
           +VDD               G+ V  A +GE AIA +    P ++++D+ MP LDG    Q
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 482 KIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPS 541
           +++   +     II LTA     +R   L  G DD++ KPF P+EL A +   L   +  
Sbjct: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR-RVDK 116

Query: 542 QGQP--PASPLRPFPVITAPSLSEQLAK 567
            G P  P+S +     I   +   Q+ K
Sbjct: 117 NGMPGIPSSGVLQIATIRIDTNKRQVYK 144


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 55.1 bits (131), Expect = 6e-10
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 11/138 (7%)

Query: 443 VVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAF 502
           V+ +AENGE AIAL+E   P V LMD++MP ++G +    I A    +   II LT    
Sbjct: 34  VIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAIV--KFARIIVLTTYDS 91

Query: 503 EGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQ---PPASPLRPFPVITAP 559
           + +    L AG   +L K   P+EL+       A+    +GQ   PP    +    ++ P
Sbjct: 92  DEDIYRGLQAGAKGYLLKETEPDELLN------AIRTVHRGQKYIPPDVGAKLVQRLSNP 145

Query: 560 SLSEQLAKTPQSWRQKMA 577
            LSE+  +   S  Q M+
Sbjct: 146 ELSERELEVLGSLAQGMS 163


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 54.7 bits (130), Expect = 8e-10
 Identities = 29/116 (25%), Positives = 62/116 (53%)

Query: 420 VLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479
           VL+V+D               G+ V  A +G  A+   +++ P ++++D+ MP ++G   
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHL 535
            ++IK+ P+ ++  +I  ++   E +R   +  G D +++KPF+P EL+  + + L
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 54.7 bits (130), Expect = 8e-10
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIA-LWESWHPQVILMDMQMPVLDGR 477
           K+L+VDD  E            GF V+ A NG  A+  L ES+  +++L+D+ MP L+G 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESY--KLVLLDVMMPKLNGI 60

Query: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
            T ++I+   +  +  ++ LTA   + +R   L  G DD L KPF   ELIA
Sbjct: 61  ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIA 109


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 420 VLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWH--PQVILMDMQMPVLDGR 477
           +LVV+D                + + EAENG +A+ L  S    P +I+ D+ MP +DG 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELI 528
                ++ + +      I LTA     +  + +++G DD+L KPF+ E+L+
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLL 114


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 51/110 (46%)

Query: 412 PLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQM 471
           P++    K+LVVDD               G  V+ A NGE A+  +    P+V+L+D  M
Sbjct: 6   PIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVM 65

Query: 472 PVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKP 521
           PV+DG +  Q +    Q    +++ +T    E        AG  D+++KP
Sbjct: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKP 115


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 52.8 bits (125), Expect = 3e-09
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 15/145 (10%)

Query: 392 PVQVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGE 451
           P+  + AP  + +   +  PP    + ++LVV+D               G+ V   ++G 
Sbjct: 11  PMATLEAPPHSLQHQEI--PP----SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGR 64

Query: 452 MAIALWESWHPQ-------VILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEG 504
            A+AL + +          +I++D+ +P ++G    + ++    G +T I+ ++A   E 
Sbjct: 65  DALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFG--GDNTPILIVSAKGSEM 122

Query: 505 ERAEILSAGCDDFLSKPFRPEELIA 529
           E+   L  G DD+++KPF  +EL+A
Sbjct: 123 EKVTGLEVGADDYITKPFSLKELVA 147


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIA-LWESW-HPQVILMDMQMPVLDG 476
           ++L+V+D P+             +VV   ++G +A + L + W +  + + D  +P L G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALL 531
               QK++   Q     I+ LTA     +R E L AG DD+L KPF   EL+A L
Sbjct: 62  LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARL 114


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 418 QKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGR 477
           +K+L+V+D                + V EA + + AI   +  +P++IL+D  +P   G 
Sbjct: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGI 61

Query: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
              Q IK         II LTA + E +    L+AG DD+++KPF P+ L+A
Sbjct: 62  QFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLA 113


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 15/123 (12%)

Query: 444 VQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFE 503
           V EA NG + + + +   P V+++D+ +P ++G   TQ++K  P      ++ LT +  E
Sbjct: 32  VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQE 91

Query: 504 GERAEILSAGCDDFLSKPFRPEELI-ALLAKH--------------LAVALPSQGQPPAS 548
                  SAG D +  K  R E LI A+ A H              LA A  ++   P+S
Sbjct: 92  ETVLAAFSAGADAYCMKDSRTELLIEAIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSS 151

Query: 549 PLR 551
           P R
Sbjct: 152 PSR 154


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 420 VLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479
           +L+VDD               G  +  A+ G+  +A+  +    ++++D  +P + G   
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529
            ++I+    G  T ++ LTA     +R   L AG DD+L KPF   EL+A
Sbjct: 64  CRQIRIL--GHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLA 111


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           K+LVV+D               G+ V EAENG     +  + +  +++MD+ +P  +G  
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVA 538
             ++++   +     +I LT    E ++   L  G DD+L+KPF P EL       L  A
Sbjct: 65  LARELR---EELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121

Query: 539 LPSQ 542
           +P Q
Sbjct: 122 MPHQ 125


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWES-WHPQVI-LMDMQMPVLDG 476
           ++L+V+D  +             +VV    +G  A    E+ W    + ++D  +P L G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALL 531
               QK++   QG    ++ LTA      R E L AG DD+L+KPF   EL+A L
Sbjct: 62  LELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARL 114


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 419 KVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478
           ++L+++D               GF V    +G+  +A   S     +++D+ +P LDG  
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALL 531
             Q+ +++ Q    +I  LTA     ER + L +G DD+L KPF   E+ A L
Sbjct: 62  VLQQWRSNHQDVPVLI--LTARDTLDERVKGLQSGADDYLCKPFALAEVAARL 112


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 417 NQKVLVVDDRPEXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476
           + +VLVV++  +            G+ V  A +G       + + P +I+++  +P + G
Sbjct: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61

Query: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHL 535
               ++++    G    II +TA     ER   L AG DD++ KPF  +E  A +   L
Sbjct: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 419 KVLVVDDRP--EXXXXXXXXXXXXGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476
           K+L+V+D P  +              ++   +NG  A+      +P +I+MD+ +P LDG
Sbjct: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77

Query: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLA 532
              T++IK +    H  I+ LT+     E    LS+G D +  K    E LI  +A
Sbjct: 78  IEATKQIKQTSPQIH--IVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIA 131


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,190
Number of Sequences: 78
Number of extensions: 2506
Number of successful extensions: 110
Number of sequences better than 1.0e-05: 37
Number of HSP's better than  0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 44
length of query: 633
length of database: 48,235
effective HSP length: 68
effective length of query: 565
effective length of database: 42,931
effective search space: 24256015
effective search space used: 24256015
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000877 sll1330 
         (250 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000877 sll1330                                            498   e-143
SYNE-PCC-01-002033 slr0947                                            125   1e-31
SYNE-PCC-01-000414 sll0649                                            123   6e-31
SYNE-PCC-01-001461 slr0115                                            118   2e-29
SYNE-PCC-01-001437 slr0081                                            112   1e-27
SYNE-PCC-01-000242 sll0396                                            111   3e-27
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   108   2e-26
SYNE-PCC-01-002486 slr1584                                            105   2e-25
SYNE-PCC-01-002672 slr1837                                             99   2e-23
SYNE-PCC-01-000518 sll0789                                             93   9e-22
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    90   8e-21
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   89   1e-20
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    86   9e-20
SYNE-PCC-01-000523 sll0797                                             80   5e-18
SYNE-PCC-01-002731 slr1909                                             57   6e-11
SYNE-PCC-01-001133 sll1673                                             56   1e-10
SYNE-PCC-01-001306 sll1905                                             53   1e-09
SYNE-PCC-01-002618 slr1760                                             52   2e-09
SYNE-PCC-01-002086 slr1042                                             51   3e-09
SYNE-PCC-01-002635 slr1783                                             46   1e-07
SYNE-PCC-01-000800 sll1228                                             45   2e-07
SYNE-PCC-01-002489 slr1588                                             44   5e-07
SYNE-PCC-01-002873 slr2098                                             42   1e-06
SYNE-PCC-01-002788 slr1982                                             42   2e-06
SYNE-PCC-01-001132 sll1672                                             41   3e-06

>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  498 bits (1281), Expect = e-143
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MNPVYISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDG 60
           MNPVYISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDG
Sbjct: 1   MNPVYISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDG 60

Query: 61  DGIELCRWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120
           DGIELCRWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR
Sbjct: 61  DGIELCRWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120

Query: 121 VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR 180
           VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR
Sbjct: 121 VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR 180

Query: 181 AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSILEEKKVVAEKPVT 240
           AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSILEEKKVVAEKPVT
Sbjct: 181 AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSILEEKKVVAEKPVT 240

Query: 241 LSPAGVSVLT 250
           LSPAGVSVLT
Sbjct: 241 LSPAGVSVLT 250


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  125 bits (314), Expect = 1e-31
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 8   VVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCR 67
           +V+    +R +L   L   GY V   +   +A   F+   P L V+D  +   DG  +C+
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 68  WLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTVAAP 127
            L ++    I +L+A     D + GL+ GADDY+ KPF  +E  ARI  ++RRV     P
Sbjct: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120

Query: 128 LLLDYGVLKIDLVQ----RRVEYQGN-FVDLTPQEFSLLYVLTQAEGSALSRTELLRRAW 182
            +   GVL+I  ++    +R  Y+G+  + LT  EFSLL +L    G   SR+E+L+  W
Sbjct: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180

Query: 183 ---PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223
              PE   + R +D H+  LR K+E DP  P LI T R  GY F
Sbjct: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  123 bits (308), Expect = 6e-31
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I +VE +  +  L+   L++  +     +      + F  Q+P L V+D  L   DG+E+
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
           C  + QQ  S    I +L+AK  E D + GL  GADDYL KPF  +E +AR+  L+RR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 123 TVAAPLLLDYGV--LKIDLVQRRV-EYQGN---FVDLTPQEFSLLYVLTQAEGSALSRTE 176
               P+   Y     ++DL Q +   YQG+    ++LT  EF+LL       G   +RT+
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 177 LLRRAW-PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223
           L+ + W  +   + R +DTH+  LRKKIE DP  P+ I+TV  +GY+F
Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  118 bits (295), Expect = 2e-29
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 12/226 (5%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I +++ +P +  L+S +L+ +GY VQQ     + +       P L ++D  L   DG  +
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
           C+ L +  ++    + +L+A    +D + G  +GADDYLTKPF ++E LAR+  L+RR  
Sbjct: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTD 123

Query: 123 TVAAPL----LLDYGVLKIDLVQRRVE--YQGNFVDLTPQEFSLLYVLTQAEGSALSRTE 176
            +        +L+ G L   LV  R E  + G  + LT  EF LL+ L Q  G  +S ++
Sbjct: 124 RIPQAAKHSEILNQGPL--TLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 177 LLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221
           +LR  W  E  D+  TI  H+  LR K+E +PR+P  I+TV   GY
Sbjct: 182 ILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  112 bits (280), Expect = 1e-27
 Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 15/231 (6%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQAR---QAFNNQ----LPTLAVIDSDLT 58
           I VVE    +R  +   LQ+ GY V        A    Q F+         L ++D  L 
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 59  DGDGIELCRWL-YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECL 117
             +G+++CR L +    + I I+SAK +E + V GL+ GADDY+TKPF ++E +AR   +
Sbjct: 93  QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152

Query: 118 IRRVRTVAAPLLLDYGVLKIDLV----QRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALS 173
           IRR + +A   +  +   + DLV    + RV  +G  V L P+EF LL +         S
Sbjct: 153 IRR-QGLAGNNIAPFRKFR-DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWS 210

Query: 174 RTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223
           R +L+   W  + + + +T+D H+  LR+K+E DP QP  + TVR  GYRF
Sbjct: 211 REQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  111 bits (277), Expect = 3e-27
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 12/222 (5%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQC----SGFHQARQAFNNQLPTLAVIDSDLTDGD 61
           + VVE    L   +   L+  GY V        GF QA++      P L +++  L    
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEF----PPDLIIVNGALPGMS 60

Query: 62  GIELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120
           G+ELCR L +    + I +++AKD  ++ V GL AGADDY+ KPF   EF ARI   +RR
Sbjct: 61  GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120

Query: 121 VRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR 180
             T +   +L +  L+ +   R ++     +DLT +EF LL  L       L+R ++L R
Sbjct: 121 THTTSDE-VLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILER 179

Query: 181 AWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221
            W  + + +   I+ ++  LR K+E    +P LIQTVR VGY
Sbjct: 180 VWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGY 220


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  108 bits (270), Expect = 2e-26
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I +VE    +R +++  L Q  Y V + S F  A        P L ++D  L    GI+ 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQF 63

Query: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
            +++ +Q       I +L+AK TE+D +  L AGADDY+TKPF  Q  LARIE + RR+ 
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIY 123

Query: 123 TVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAW 182
              +   +    L ID   +RV +Q   ++L+  EF LL+   +      SR +LL R W
Sbjct: 124 EQQSQ-FIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 183 PEAID-NPRTIDTHVLSLRKKIETDPRQ-PSLIQTVRNVGYRFNSSILEEK 231
              ++   RT+D+++  LR+ +   P Q    IQTVR  GYRF+S + +++
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLA--PFQCEHYIQTVRGSGYRFSSYLRDKQ 231


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  105 bits (261), Expect = 2e-25
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 5/190 (2%)

Query: 50  LAVIDSDLTDGDGIELC-RWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQ 108
           L ++D  L + DGI LC +W    +   I +++A+DT  D + GL AGADDY+ KP  + 
Sbjct: 47  LVILDVMLPELDGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLG 106

Query: 109 EFLARIECLIRRVRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAE 168
           E  AR+  L+RR      P +L++G +++D     V Y    + LT +E+S+L +L +  
Sbjct: 107 ELFARVRALLRRGCATCQP-VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNG 165

Query: 169 GSALSRTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSI 227
              LSR+ ++   W  E+     T+  HV SLR+K+++       I+TV  +GYR  +  
Sbjct: 166 RRVLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLAN-- 223

Query: 228 LEEKKVVAEK 237
           L EK +   K
Sbjct: 224 LTEKSLCQGK 233


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 98.6 bits (244), Expect = 2e-23
 Identities = 67/188 (35%), Positives = 97/188 (51%), Gaps = 12/188 (6%)

Query: 50  LAVIDSDLTDGDGIELCRWL-YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQ 108
           L ++D  L    G+E+CR +    H + +  L+AKDT  D V GL AG DDYL KPF ++
Sbjct: 48  LLILDWMLPQVSGLEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELR 107

Query: 109 EFLARIECLIRRV---RTVAAPL------LLDYGVLKIDLVQRRVEYQGNFVDLTPQEFS 159
           E LAR+  L+RR     T+   L      LL    + +D+  +    QG  + L+ +E +
Sbjct: 108 ELLARVRALLRRQSHGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVA 167

Query: 160 LLYVLTQAEGSALSRTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRN 218
           LL +  QA G  LS  E+    WP E+  +   +   V  LR+KIE  P  P LI +V  
Sbjct: 168 LLTLFLQAPGQILSHEEIYSHLWPGESPPSSNVLAALVRLLRRKIE-QPNAPRLINSVYG 226

Query: 219 VGYRFNSS 226
            GY F ++
Sbjct: 227 KGYCFEAN 234


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 92.8 bits (229), Expect = 9e-22
 Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 21/228 (9%)

Query: 8   VVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQA----RQAFNNQLPTLAVIDSDLTDGDGI 63
           +VE  P L   L   L++  Y+V      + A     Q + N   TLA+ D  +    G+
Sbjct: 5   LVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNY--TLAIFDWMVPGLSGL 62

Query: 64  ELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
           ELC+ L  Q  S+ I +L+AKD   D V GL AGADDYL KPFGM E LAR+  L RR  
Sbjct: 63  ELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRSP 122

Query: 123 TVAAPLL------LDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTE 176
            +    L      LDYG   +      V  +   + LT +EF LL    +     LS  +
Sbjct: 123 ELQPQQLQVGQWWLDYGTFAV------VTPEQARITLTAKEFQLLEYFMKHPQQILSSEQ 176

Query: 177 LLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223
           +  + W   A      +   V  LR+K+E +    +LI+TV  +GYRF
Sbjct: 177 IKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRF 223


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 89.7 bits (221), Expect = 8e-21
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I ++E +  + + L   L + G+ V   +       A  +      V+D  L   DG+E+
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 66  CRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTV 124
            +     HQ + + IL+A+DT  + V GL++GADDYL KPF + E  AR++ LIRR    
Sbjct: 63  LQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGY 122

Query: 125 AAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRR--AW 182
              ++   GV K+D  QR V      + LT +E+ LL +    +   LSR+ +  +  +W
Sbjct: 123 HHSVIEQAGV-KLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSW 181

Query: 183 PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221
            E I +   +D H+ +LR+K+         I+TV  VGY
Sbjct: 182 DEEISS-GALDVHIYNLRQKL-----GKQFIRTVHGVGY 214


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 89.4 bits (220), Expect = 1e-20
 Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 6/219 (2%)

Query: 8   VVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCR 67
           +V+ +  L  LLS  L+  G+ V+  +   +A Q  N     L ++D  +   +GIE  +
Sbjct: 6   LVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIETLK 64

Query: 68  WLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR----VRT 123
            + +     + +L+A+  + D V GL+ GADD L KPF  +E +ARI+ ++RR       
Sbjct: 65  EIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSASPSNN 124

Query: 124 VAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAWP 183
           ++   +L +  + +        Y    ++LT  EF +L +L +++G+ +SR EL      
Sbjct: 125 ISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSLEVME 184

Query: 184 EAIDN-PRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221
           + +    R++D H+ +LR+K+     +PS  +T+R  GY
Sbjct: 185 KPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 86.3 bits (212), Expect = 9e-20
 Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 8/230 (3%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I VVE     R+ L    +  GY V +     +      N    L V+D +L   +G+ L
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 66  CRWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRV---- 121
            R L ++    +  L+ +D E D + GL+ GADDYLTKPF  +E   R   L+ R     
Sbjct: 66  ARELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPHQ 125

Query: 122 --RTVAAPLLLDYGVLKIDLVQRR-VEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELL 178
                       +   K+DL     +  +G    L   EF  +    +  G   +R ELL
Sbjct: 126 EKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREELL 185

Query: 179 RR-AWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSI 227
           ++    E     RT+D  +  +RK  E  P  P++I T+   GYRF   I
Sbjct: 186 KKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRFCGDI 235


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 80.5 bits (197), Expect = 5e-18
 Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 18/235 (7%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLP--TLAVIDSDLTDGDGI 63
           I +VE    L   +   L    Y+V   +   QA     NQ    TLA++D  L    G+
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 64  ELCRWLYQQHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
           ELC+ L  Q  S+ + +L+A    ++ V GL AGADDYLTKPF M E LAR+  L RR  
Sbjct: 63  ELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR-S 121

Query: 123 TVAAPLLLDYGVLKID--------LVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSR 174
               P +L  G   +D         +   +  +   + LT +EF +   L Q     +S 
Sbjct: 122 PQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISG 181

Query: 175 TELLRRAW---PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSS 226
           +++ ++ W    E + N   +   +  +R+K+      P  I+TV   GYRF  S
Sbjct: 182 SKIRQQLWDLDEEPMSN--VVAAQMRLIRRKL-AQQNCPCPIKTVPGQGYRFTLS 233


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 57.0 bits (136), Expect = 6e-11
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 5   YISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIE 64
           ++ +V+ +P+L  L+  +L+  GY V       +A       +P + V D  + + DG  
Sbjct: 9   HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68

Query: 65  LCRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRV 121
               + Q        +  LSAK    + V GL  GAD Y+ KPF  +E  A+++  +R+ 
Sbjct: 69  FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ- 127

Query: 122 RTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRA 181
               A  LL +    ++    RV+   + V+LTP E  ++ ++ Q   +        R  
Sbjct: 128 ----ADRLLQHNNHPLE-DNARVQVARD-VELTPTETKVIQLVAQGLAN--------REI 173

Query: 182 WPEAIDNPRTIDTHVLSLRKK 202
                 + RT+++HV ++  K
Sbjct: 174 ADHLKVSQRTVESHVSNMLNK 194


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I +V+  P+   LLS  L   GY V+  +    A +    + P L ++D  + D DG ++
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 66  CRWLYQQHQ----SMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIE 115
           C  + ++ +     +IFI +  DT  D V   + G  DY+TKPF ++E +ARIE
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTF-DKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 18  LLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCRWLYQQHQSM- 76
           ++S  L+  GY     +   +A Q      P L ++D  +   DG+E+C  L Q  Q+  
Sbjct: 32  VISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRD 91

Query: 77  --IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIE 115
             +  L+A + ++D++     GA DY+TKPF   E LAR++
Sbjct: 92  IPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           I VV+ +  +R  L  +LQ+ G+ V+  +   +A   F    P + ++D+ +   DG   
Sbjct: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73

Query: 66  CRWL---YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
           C+ L   YQ    ++ +++  D E  +    +AGA DY+TKP        R++ L+ + R
Sbjct: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQNR 133


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           + +VE +   R ++S  L+  G+ V       +A +   N  P L V+D  +   +G E+
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIR 119
           CR +    ++    + + S+K  E D   G++ GAD Y+ KPF   E +  I+ L+R
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 3   PVYISVVEGNPHLRSLLSWHLQQSG-YLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGD 61
           P+ + +V+  P +R  +   L+ SG + V   +   +A     + LP L + D  +   D
Sbjct: 55  PISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVD 114

Query: 62  GIELCRWLYQ--QHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLI 118
           G +  + L +  + QS+ +  L+A+    D + G + G D +L+KPF   E  A +  L+
Sbjct: 115 GYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174

Query: 119 RR 120
            R
Sbjct: 175 AR 176


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           + VV+  P  R LL   L   G++VQ+      A   + +  P + ++D  +   DG   
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479

Query: 66  CRWLY---QQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122
            + +    Q   ++I  L+A   E +    L AG DD+L+KPF  +E +A    L+ +  
Sbjct: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA----LLAKHL 535

Query: 123 TVAAP 127
            VA P
Sbjct: 536 AVALP 540


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 43.9 bits (102), Expect = 5e-07
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQ--LPTLAVIDSDLTDGDGI 63
           I VVE    +R L+   L    Y + +      A    N+   +P L + D  + + DG 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 64  ELCRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120
            L   L +  ++       L+A  T +D   G+ +GADDYL KPF  ++ L  +   +++
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123

Query: 121 VRTVAA 126
              ++A
Sbjct: 124 QAKLSA 129


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 42.4 bits (98), Expect = 1e-06
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAF-----NNQLPTLAVIDSDLTDG 60
           + VV+ N H R ++   L+Q  ++V+      +A          N   ++  ID  + + 
Sbjct: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832

Query: 61  DGIELCRWLYQQ---HQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFG---MQEFLARI 114
           DG+E+ R L      HQ  IFI++A   E+  V     G DD L KP     + + LAR+
Sbjct: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65
           + +VE N   R +LS  L + GY V       QA     ++ P L ++D  L   DG   
Sbjct: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66

Query: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLI 118
            + +          I  L+A     D    + AG DDY TKP  ++  L ++E LI
Sbjct: 67  TKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 41.2 bits (95), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 3   PVY-ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGD 61
           PVY I VV+     R LL   L   G+ +++ S   +A   + +  P L  +D  +   D
Sbjct: 628 PVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMD 687

Query: 62  GIELCRWLYQQ---HQSMIFILSAKDTEKDIVHGLKAGADDYLTKPF 105
           G E  +++  Q   + + +  L+A   E++    L AG DD+L KPF
Sbjct: 688 GYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,142
Number of Sequences: 78
Number of extensions: 978
Number of successful extensions: 70
Number of sequences better than 1.0e-05: 25
Number of HSP's better than  0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 28
length of query: 250
length of database: 48,235
effective HSP length: 61
effective length of query: 189
effective length of database: 43,477
effective search space:  8217153
effective search space used:  8217153
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000891 sll1353 
         (998 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000891 sll1353                                           1756   0.0  
SYNE-PCC-01-002879 slr2104                                            139   5e-35
SYNE-PCC-01-002873 slr2098                                            131   9e-33
SYNE-PCC-01-001280 sll1871                                            126   3e-31
SYNE-PCC-01-002617 slr1759                                            123   2e-30
SYNE-PCC-01-001306 sll1905                                            115   7e-28
SYNE-PCC-01-000800 sll1228                                            109   5e-26
SYNE-PCC-01-001132 sll1672                                            103   2e-24
SYNE-PCC-01-001294 sll1888                                             99   8e-23
SYNE-PCC-01-000295 sll0474                                             94   3e-21
SYNE-PCC-01-001509 slr0210                                             72   8e-15
SYNE-PCC-01-002778 slr1969                                             71   2e-14
SYNE-PCC-01-000985 sll1475                                             66   5e-13
SYNE-PCC-01-001517 slr0222                                             64   3e-12
SYNE-PCC-01-002220 slr1212                                             45   1e-06
SYNE-PCC-01-000983 sll1473                                             42   9e-06

>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score = 1756 bits (4547), Expect = 0.0
 Identities = 908/998 (90%), Positives = 908/998 (90%)

Query: 1   MGKFLDLLQKYWLLPCLLLAGYGGNYFKLHIFFGVDFLFGSIATLLVLVCYSLPWGLVSA 60
           MGKFLDLLQKYWLLPCLLLAGYGGNYFKLHIFFGVDFLFGSIATLLVLVCYSLPWGLVSA
Sbjct: 1   MGKFLDLLQKYWLLPCLLLAGYGGNYFKLHIFFGVDFLFGSIATLLVLVCYSLPWGLVSA 60

Query: 61  AIAGSHTLIIWRHGYGILIIILEALVVGLMLRRRQTNLVLINSLFWLLIGIPLVYIFYRW 120
           AIAGSHTLIIWRHGYGILIIILEALVVGLMLRRRQTNLVLINSLFWLLIGIPLVYIFYRW
Sbjct: 61  AIAGSHTLIIWRHGYGILIIILEALVVGLMLRRRQTNLVLINSLFWLLIGIPLVYIFYRW 120

Query: 121 GLNMTSVTTSLITLKQATNGIFNSLIASFLITGFGLSKQKFSPSTNPAFFPWKKLSFEQT 180
           GLNMTSVTTSLITLKQATNGIFNSLIASFLITGFGLSKQKFSPSTNPAFFPWKKLSFEQT
Sbjct: 121 GLNMTSVTTSLITLKQATNGIFNSLIASFLITGFGLSKQKFSPSTNPAFFPWKKLSFEQT 180

Query: 181 XXXXXXXXXXXXXXXXXXXNGQEAFVQMEKQTVQELTALSIPIQNSVEDWYQSHLEGAEV 240
                              NGQEAFVQMEKQTVQELTALSIPIQNSVEDWYQSHLEGAEV
Sbjct: 181 LFNLLVAFVFFPLFFITVVNGQEAFVQMEKQTVQELTALSIPIQNSVEDWYQSHLEGAEV 240

Query: 241 FATEILPLVAAINQGNGAQLPALSLMTHTIQTAFTGFSNIYVGDRQGQIIASSPEFNEVG 300
           FATEILPLVAAINQGNGAQLPALSLMTHTIQTAFTGFSNIYVGDRQGQIIASSPEFNEVG
Sbjct: 241 FATEILPLVAAINQGNGAQLPALSLMTHTIQTAFTGFSNIYVGDRQGQIIASSPEFNEVG 300

Query: 301 ESRLGLIQAEKIAGFSIPSQIQVSPLHRTNVNVDPHVAITIPLVANNSFEGFINASLNLA 360
           ESRLGLIQAEKIAGFSIPSQIQVSPLHRTNVNVDPHVAITIPLVANNSFEGFINASLNLA
Sbjct: 301 ESRLGLIQAEKIAGFSIPSQIQVSPLHRTNVNVDPHVAITIPLVANNSFEGFINASLNLA 360

Query: 361 KMKDLLYANRVSKELNITLINGQNQVVASTIANVLPLEIYQPFEGGDPRDLGSSNYHWYP 420
           KMKDLLYANRVSKELNITLINGQNQVVASTIANVLPLEIYQPFEGGDPRDLGSSNYHWYP
Sbjct: 361 KMKDLLYANRVSKELNITLINGQNQVVASTIANVLPLEIYQPFEGGDPRDLGSSNYHWYP 420

Query: 421 DTPANPTIRWRDSYYYHILPLDKINDWQLVLGLPARESIEKLQAXXXXXXXXXXXXXXXX 480
           DTPANPTIRWRDSYYYHILPLDKINDWQLVLGLPARESIEKLQA                
Sbjct: 421 DTPANPTIRWRDSYYYHILPLDKINDWQLVLGLPARESIEKLQAQSVQKLGLLLFLSLVG 480

Query: 481 XXXAIGVSKRVANPLLTLAKITTDIPTKMQYQGLTPIALRSEVSEVITLNENFNEMLITL 540
              AIGVSKRVANPLLTLAKITTDIPTKMQYQGLTPIALRSEVSEVITLNENFNEMLITL
Sbjct: 481 LVVAIGVSKRVANPLLTLAKITTDIPTKMQYQGLTPIALRSEVSEVITLNENFNEMLITL 540

Query: 541 QNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVK 600
           QNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVK
Sbjct: 541 QNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVK 600

Query: 601 SEFLANISHEIRTPMNAILGFCXXXXXXXXXXXXXXKYLNAIGXXXXXXXXXXXXXXXXX 660
           SEFLANISHEIRTPMNAILGFC              KYLNAIG                 
Sbjct: 601 SEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIGSSSKILLALIDDILDIS 660

Query: 661 XXEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQI 720
             EAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQI
Sbjct: 661 KIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQI 720

Query: 721 LFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVF 780
           LFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVF
Sbjct: 721 LFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVF 780

Query: 781 TQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGSTFILHFPAVRLVENSLKS 840
           TQSQGQSTRKY                   EISLSSRLGEGSTFILHFPAVRLVENSLKS
Sbjct: 781 TQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFPAVRLVENSLKS 840

Query: 841 DLTNGDGGNLTDRLGSMSSSSANTTEKLLPTRVGNMAPDNNSLGNHNGPSQGFPRAVPLI 900
           DLTNGDGGNLTDRLGSMSSSSANTTEKLLPTRVGNMAPDNNSLGNHNGPSQGFPRAVPLI
Sbjct: 841 DLTNGDGGNLTDRLGSMSSSSANTTEKLLPTRVGNMAPDNNSLGNHNGPSQGFPRAVPLI 900

Query: 901 DQAQRQQLISLLEQEETNVWNKLRHTLISRQIRNFGDRLSSWGNEYGWEDLHTYGQSIIK 960
           DQAQRQQLISLLEQEETNVWNKLRHTLISRQIRNFGDRLSSWGNEYGWEDLHTYGQSIIK
Sbjct: 901 DQAQRQQLISLLEQEETNVWNKLRHTLISRQIRNFGDRLSSWGNEYGWEDLHTYGQSIIK 960

Query: 961 ALENFDSRRLEQLMGQFPQYRASLTEVSAGVDGKHASE 998
           ALENFDSRRLEQLMGQFPQYRASLTEVSAGVDGKHASE
Sbjct: 961 ALENFDSRRLEQLMGQFPQYRASLTEVSAGVDGKHASE 998


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  139 bits (349), Expect = 5e-35
 Identities = 92/282 (32%), Positives = 132/282 (46%), Gaps = 21/282 (7%)

Query: 547 IKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVKSEFLAN 606
           ++   + LE R+ ERT            E+E  Q     L EAK  AE A + KSEFLAN
Sbjct: 419 LEHLNEKLEQRIQERTQ-----------ELENSQE---SLLEAKLVAEGATKAKSEFLAN 464

Query: 607 ISHEIRTPMNAILGFCXXXXXXXXXXXXXXKYLNAIGXXXXXXXXXXXXXXXXXXXEAGK 666
           +SHEIRTPMNAI+G                 YL  +                    EAGK
Sbjct: 465 MSHEIRTPMNAIIGM-SELVLQTDLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGK 523

Query: 667 LVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVG 726
           L +  +P  +  ++  +  I   +AE+K L L   +D  +   +  D +RL QIL NL  
Sbjct: 524 LELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGN 583

Query: 727 NALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQ 786
           NA+KFT +G+    I + G  ++++     L   VTDTGIG+ P+ Q+K+F  F Q +  
Sbjct: 584 NAVKFTNQGE----ITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETS 639

Query: 787 STRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGSTFILHF 828
           ++R+Y                   +I L S +G+GSTF  HF
Sbjct: 640 TSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTF--HF 679


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  131 bits (330), Expect = 9e-33
 Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 583 EIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXXXXKYLNAI 642
           E +++ AKE AE A+R+K++FLAN+SHEIRTPMNA++G                +YL+ I
Sbjct: 510 EAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGM-THLALKTDLTPRQREYLHKI 568

Query: 643 GXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQI 702
                               EAGKL +     DL  ++  +  +   KA +K L L   I
Sbjct: 569 RFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDI 628

Query: 703 DETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVT 762
           D  L +    D +RL QIL N   NA+KFTE+G + I + ++  + R Q   + LA++  
Sbjct: 629 DRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQ--EYRDQDVVLYLAVK-- 684

Query: 763 DTGIGIAPEDQAKIFDVFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGS 822
           DTGIGI PE  A +F+ F Q+   +TR +                   E+ + S  G+GS
Sbjct: 685 DTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGS 744

Query: 823 TF 824
           TF
Sbjct: 745 TF 746


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  126 bits (317), Expect = 3e-31
 Identities = 122/507 (24%), Positives = 205/507 (40%), Gaps = 42/507 (8%)

Query: 351 GFINASLNLAKMKDLLYANRVSKELNITLINGQNQVVASTIA--------------NVLP 396
           G+++  +NL  + DL+       +   T + G+     S IA              N   
Sbjct: 194 GYLSIDINLNAVDDLIRKRTGLGDTGETFLVGEINNQVSFIASDENKKLTANGSKPNFNS 253

Query: 397 LEIYQPFEGGDPRDLGSSNYHWYPDTPANPTIRWRDSYYYHILPLDKINDWQLVLGLPAR 456
           L I     G      G  +Y  Y  TP     +W + Y           +  L+  +   
Sbjct: 254 LGINSVMAGNS----GQGSYVNYAGTPVLGVYQWIEKY-----------NLALITEISEV 298

Query: 457 ESIEKLQAXXXXXXXXXXXXXXXXXXXAIGVSKRVANPLLTLAKITTDIPTKMQYQGLTP 516
           E++E  +                       +S ++  P+L + K   DI +  + +   P
Sbjct: 299 EALELARRFTRMLVLVGLVSTALLLIAVYLLSIKITKPILLITKAAIDISSGDR-EARAP 357

Query: 517 IALRSEVSEVITLNENFNEMLITLQNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEI 576
           +    E+     L ++FN M   L+     +++    LE+   +       + +++    
Sbjct: 358 VLGEDELG---ILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRT 414

Query: 577 EERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXXXX 636
           EE +     L  A   AE AN  KS FLAN+SHE+RTP+NAI+G+               
Sbjct: 415 EELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEE 474

Query: 637 KY--LNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKAESK 694
               L+ I                    EAGK+ ++LE  +L+ +I  I        ++ 
Sbjct: 475 LVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNN 534

Query: 695 SLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTY 754
           +  L ++I    ++ +Y D ++LRQ + NL+ NA KFT++G   I   VE  +V  +   
Sbjct: 535 NNKLEVEISLE-SEEVYGDLIKLRQGILNLLSNASKFTKDG--IISFIVEEFKVDEKDW- 590

Query: 755 ISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISL 814
             L+ +V DTGIG+  E  +K+F  FTQ+   +TRKY                   +I L
Sbjct: 591 --LSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYL 648

Query: 815 SSRLGEGSTFILHFPAVRLVENSLKSD 841
           +S +G GS+F +  P    + NS K+D
Sbjct: 649 TSEIGVGSSFTIKLPKYAQL-NSAKND 674


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  123 bits (309), Expect = 2e-30
 Identities = 92/286 (32%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 552  DNLEM--RVAERTHTLIVINKQLAGEIEERQRI---EIKLREAKESAELANRVKSEFLAN 606
            D +E+   +AE+    +     L  E E R+ +    ++L +A  +AE ANR K EFLA 
Sbjct: 725  DEIELLEAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAM 784

Query: 607  ISHEIRTPMNAILGFCXXXXXXXXXXXXXXKYLNAIGXXXXXXXXXXXXXXXXXXXEAGK 666
            +SHEIRTPMN ++G                 Y+  I                    EA K
Sbjct: 785  MSHEIRTPMNGVIGM-TELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADK 843

Query: 667  LVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVG 726
            LV+  +  +LR +I  + ++F   A +K L LT  ID      I  D VRLRQIL NL+G
Sbjct: 844  LVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIG 903

Query: 727  NALKFTEEGQVFIYIGVEGIQ-VRSQGTYISL-------AIEVTDTGIGIAPEDQAKIFD 778
            NALKFTE+G+V + +  E      S  T ++L          + DTGIGI  + Q ++F 
Sbjct: 904  NALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFK 963

Query: 779  VFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGSTF 824
             F+Q    +TRKY                    ++++S  G GS F
Sbjct: 964  SFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNF 1009


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  115 bits (288), Expect = 7e-28
 Identities = 81/237 (34%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 558 VAERTHTLIVINKQLAGEIEERQRIEIKLRE---AKESAELANRVKSEFLANISHEIRTP 614
           +++R    ++  + L  E   RQ++  + +E   A  +AE ANR KSEFLA +SHEIRTP
Sbjct: 276 ISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVAATTAAEAANRSKSEFLATMSHEIRTP 335

Query: 615 MNAILGFCXXXXXXXXXXXXXXKYLNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPV 674
           MNAI+G                 +   I                    EAGKL + + P 
Sbjct: 336 MNAIIGMTGLLLDTDLTTQQKY-FAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPF 394

Query: 675 DLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEE 734
           DL   + E   +    A  KSL L  +    +   +  D  RLRQIL NL+ NA+KFTE 
Sbjct: 395 DLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEA 454

Query: 735 GQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKY 791
           GQV + + V      ++G Y  +   V DTGIGIAP  Q  +F  F+Q     TR++
Sbjct: 455 GQVKVTVEVVDHDA-AKGEY-QICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRF 509


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  109 bits (272), Expect = 5e-26
 Identities = 75/255 (29%), Positives = 122/255 (47%), Gaps = 4/255 (1%)

Query: 577 EERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXXXX 636
           + R + E  L +AKE+A+ ANR K+EFLA+ISHE+RTP+NAI+GF               
Sbjct: 140 QARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGF-SQLLHRDPSLAPHR 198

Query: 637 KYLNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSL 696
             L+ I                    EAG+  ++ + +D   ++  ++ +F  +A+ K L
Sbjct: 199 PTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQL 258

Query: 697 LLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIG-VEGIQV-RSQGTY 754
           LL ++    + + I  D  +LRQ+L NL+ NA+KFT +G V + +  +   Q    QG  
Sbjct: 259 LLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGAS 318

Query: 755 ISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISL 814
           I L   V+DTG GIA  +  ++F  F Q++    +                     +I +
Sbjct: 319 IWLHFLVSDTGPGIAAHEMDELFVPFAQTE-TGLKSCQGNGLGLPISQKFVQLMGGQIQV 377

Query: 815 SSRLGEGSTFILHFP 829
            S++ +GS F    P
Sbjct: 378 RSKVDQGSAFFFAIP 392


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  103 bits (258), Expect = 2e-24
 Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 28/325 (8%)

Query: 514 LTPIALRSEVSEVITLNENFNEMLIT----LQNQFKIIKQAKDNLEMRVAERTHTLIVIN 569
           +T + L + +SE    NE     L T    L  Q + +++     E+  A+R   LI  N
Sbjct: 287 MTTLVLNAVLSE----NERSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYN 342

Query: 570 KQLAGEIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXX 629
           + L  +++        L  AKE AE   + KS F+AN+SHE+R+P+NAI+GF        
Sbjct: 343 ESLQKQVD--------LVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTK 394

Query: 630 XXXXXXXKYLNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDY 689
                  +    I                    EAGK  ++    DL +++ +++ +   
Sbjct: 395 NLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHL 454

Query: 690 KAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFI---YIGVEGI 746
           KA ++ + L    D  L + +Y D ++LRQIL NL+ NA+KFT EG+V +   +   E  
Sbjct: 455 KAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQ 514

Query: 747 QVRSQGTYIS------LAIEVTDTGIGIAPEDQAKIFDVFTQSQ-GQSTRKYXXXXXXXX 799
           +V +  T         L   + DTG GI+  + + +F+ F+Q++ G++ ++         
Sbjct: 515 EVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQE--GTGLGLA 572

Query: 800 XXXXXXXXXXXEISLSSRLGEGSTF 824
                      +I++SS + +G+TF
Sbjct: 573 ITRQFIKLMGGDINVSSVVDQGTTF 597


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score = 98.6 bits (244), Expect = 8e-23
 Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 3/210 (1%)

Query: 585 KLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXXXX-KYLNAIG 643
           +L +A ++AE A+R+KSEFLA+ +HE+RTP+N I+GF                +++    
Sbjct: 179 ELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAY 238

Query: 644 XXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQID 703
                              EAG++ I LE VD   +++  +     +A++K L   +   
Sbjct: 239 QSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAP 298

Query: 704 ETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYIS--LAIEV 761
                 +Y +   L Q++ N+VGNA+KFT EG + + + V    V  +G      L + V
Sbjct: 299 NQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSV 358

Query: 762 TDTGIGIAPEDQAKIFDVFTQSQGQSTRKY 791
            DTGIG++ E Q+K+F  F Q  G  ++ Y
Sbjct: 359 GDTGIGVSLEQQSKLFKKFVQIDGSHSKAY 388


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score = 93.6 bits (231), Expect = 3e-21
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 11/264 (4%)

Query: 575 EIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXX 634
           +I E ++ E +L+ + +    A ++K EFLAN+SHE+RTP+N+ILG              
Sbjct: 393 DITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN 452

Query: 635 XXKY--LNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKAE 692
             +   L  +                    EAG++ + L P  +  ++          A 
Sbjct: 453 GKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAI 512

Query: 693 SKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQG 752
            K + L+ +I   L   +  D  RL Q+L NL+ NA+KFT EG   +   V+   ++ QG
Sbjct: 513 QKQINLSSEIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVV---VQADLIKEQG 568

Query: 753 TYIS-----LAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYXXXXXXXXXXXXXXXX 807
              S     L+  V DTGIGI  +    IF+ F Q      R+Y                
Sbjct: 569 KENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVEL 628

Query: 808 XXXEISLSSRLGEGSTFILHFPAV 831
               ++++S+L EGS F +  P V
Sbjct: 629 HGGSVTVTSKLNEGSRFKITIPCV 652


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score = 72.0 bits (175), Expect = 8e-15
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 12/235 (5%)

Query: 604 LANISHEIRTPMNAILGFCXXXXXXXXXXXX--XXKYLNAIGXXXXXXXXXXXXXXXXXX 661
           L++I HE RTP+ AI+GF                 +Y+                      
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 662 XEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQIL 721
            +A    +  E V +  +   +  +   KA+ K L L + ID+ ++   Y D  R +QIL
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFC-YVDQRRWKQIL 308

Query: 722 FNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFT 781
            NL+ N +KFT +G V + +         + T  +L   V DTGIGI PEDQ  +F  F 
Sbjct: 309 INLLSNGVKFTPKGSVTLAV---------KATDKALIFSVIDTGIGIDPEDQRDLFQPFK 359

Query: 782 QSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGSTFILHFPAVRLVEN 836
           Q     +                      +I L+S  G GS F    P    V+N
Sbjct: 360 QISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTSVKN 414


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 70.9 bits (172), Expect = 2e-14
 Identities = 71/292 (24%), Positives = 110/292 (37%), Gaps = 41/292 (14%)

Query: 547 IKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVKSEFLAN 606
           +++ K+N E RV ERT                      +LR+   +A+ AN +KS+F+ N
Sbjct: 347 VQKQKNNFEKRVIERTK---------------------ELRDTLMAAQAANLLKSQFINN 385

Query: 607 ISHEIRTPMNAILGFCXXXXX-----XXXXXXXXXKYLNAIGXXXXXXXXXXXXXXXXXX 661
           ISHE+RTP+ +I+G                      YL  I                   
Sbjct: 386 ISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQ 445

Query: 662 XEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLN---QAIYFDAVRLR 718
            E+G+  ++ +   L  + + +  I      +    + +++D  +N        D  RL 
Sbjct: 446 LESGQTALNCQSFSLHTLAQTV--IHSLLGVAIKQQINLELDYQINVGQDQFCADQERLD 503

Query: 719 QILFNLVGNALKFT-EEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIF 777
           QIL  L+ NALKFT  EG V + I  E  Q            +V DTGIGI  +    +F
Sbjct: 504 QILTQLLNNALKFTPAEGTVILRIWKESNQA---------IFQVEDTGIGINEQQLPVLF 554

Query: 778 DVFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXXEISLSSRLGEGSTFILHFP 829
           + F  +    T  Y                    I + S  G+G+ F    P
Sbjct: 555 EAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIP 606


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 66.2 bits (160), Expect = 5e-13
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 18/253 (7%)

Query: 575 EIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXXX 634
           ++ ER+R E ++R A E  +  +R+K+ F +  SHE RTP++  L               
Sbjct: 45  DVTERRRTE-EVRLALEREKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLD 103

Query: 635 XXKY---LNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKA 691
             K    L+ I                    EAGKL  +   +DL+++ ++  +      
Sbjct: 104 PDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSV 163

Query: 692 ESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEG-QVFIYIGVEGIQVRS 750
             +     I   +     +  D   +R IL NL+ NA+K++  G Q+ I + ++  Q+  
Sbjct: 164 SDQYYFDFICSAQDTKALV--DERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQI-- 219

Query: 751 QGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYXXXXXXXXXXXXXXXXXXX 810
                    EVTD GIGI+PEDQ +IF+ F   +G++ R                     
Sbjct: 220 -------IFEVTDQGIGISPEDQKQIFEPF--HRGKNVRNITGTGLGLMVAKKCVDLHSG 270

Query: 811 EISLSSRLGEGST 823
            I L S + +G+T
Sbjct: 271 SILLKSAVDQGTT 283


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 63.5 bits (153), Expect = 3e-12
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 575  EIEERQRIEIK-LREAKESAELANRVKSEFLANISHEIRTPMNAILGFCXXXXXXXXXXX 633
            +I + +R EI+ LR   +  EL N  KS+F+  +SHE RTP+ +I+GF            
Sbjct: 915  DITDIKRAEIETLRSLVKEREL-NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLS 973

Query: 634  XXXK--YLNAIGXXXXXXXXXXXXXXXXXXXEAGKLVIHLEPVDLRVIIREIKQIFDYKA 691
               K  Y+N I                    +A K+ I L  ++LR +  ++ + F    
Sbjct: 974  TEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGL 1033

Query: 692  ESK-SLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRS 750
             S+ +  L   +    +  +  D   LR IL N++ NA+K++  G          I +  
Sbjct: 1034 GSEHNFELNYHLKPDEHSLV--DVRLLRHILENILSNAIKYSAPGST--------ITLDI 1083

Query: 751  QGTYISLAIEVTDTGIGIAPEDQAKIFDVF 780
                  L  +V D GIGI  +DQ K+F+ F
Sbjct: 1084 SKDEEHLLFQVRDEGIGIPLQDQEKLFEAF 1113


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 524 SEVITLNENFNEMLITLQNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIE 583
           +E+ TLN   N+ +   Q     +++  +NLE RV +RT  L  IN+QL  EIE++ R +
Sbjct: 129 TELATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAK 188

Query: 584 IKLREAKES-AELANRVKSEFLANIS 608
             L + K+  A+LA  V+S   A IS
Sbjct: 189 EDLEKNKDQLAQLAAIVESSQDAIIS 214


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score = 42.0 bits (97), Expect = 9e-06
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 525 EVITLNENFNEMLITLQNQ--FKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRI 582
           EV  + +  N++ I +Q    ++ ++Q   +LE RV +RT  L   N+ L  EI ERQ+ 
Sbjct: 196 EVELMKQLANQVAIAIQQSELYEQLQQLNKDLENRVEKRTQQLAATNQSLRMEISERQKT 255

Query: 583 EIKLREAKESAE--LANRVKSEFLANISHEIR 612
           E  LR    + +  +A   +  F  N++ +I+
Sbjct: 256 EAALRHTNHTLQSLIAASPRGIFTLNLADQIQ 287


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,729
Number of Sequences: 78
Number of extensions: 3528
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 16
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 26
length of query: 998
length of database: 48,235
effective HSP length: 72
effective length of query: 926
effective length of database: 42,619
effective search space: 39465194
effective search space used: 39465194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000943 sll1424 
         (491 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000943 sll1424                                            865   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036       55   6e-10
SYNE-PCC-01-000727 sll1120                                             51   7e-09
MGEN-G37-01-000335 MG328  conserved hypothetical protein               49   5e-08
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443     48   6e-08
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)        48   8e-08
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...    45   5e-07
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054     43   2e-06
SYNE-PCC-01-001071 sll1583                                             43   2e-06

>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score =  865 bits (2234), Expect = 0.0
 Identities = 466/491 (94%), Positives = 466/491 (94%)

Query: 1   MTSAYXXXXXXXXXXXXXAALGDHLGSKVGKARLRLFKLRPRQTAVLLTVITGTLISAST 60
           MTSAY             AALGDHLGSKVGKARLRLFKLRPRQTAVLLTVITGTLISAST
Sbjct: 1   MTSAYILVLSVLVLGGIIAALGDHLGSKVGKARLRLFKLRPRQTAVLLTVITGTLISAST 60

Query: 61  LGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERS 120
           LGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERS
Sbjct: 61  LGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERS 120

Query: 121 RELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRD 180
           RELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKD            VKLRD
Sbjct: 121 RELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRD 180

Query: 181 QELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIA 240
           QELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIA
Sbjct: 181 QELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIA 240

Query: 241 AKDNDIQAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQLLAFGGLRV 300
           AKDNDIQAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQLLAFGGLRV
Sbjct: 241 AKDNDIQAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQLLAFGGLRV 300

Query: 301 VSSEAVTGAVDQLLRQANRTALQLVKTPNMPVPDEPIVRVTTAQVDSITSQLQPGQEYVI 360
           VSSEAVTGAVDQLLRQANRTALQLVKTPNMPVPDEPIVRVTTAQVDSITSQLQPGQEYVI
Sbjct: 301 VSSEAVTGAVDQLLRQANRTALQLVKTPNMPVPDEPIVRVTTAQVDSITSQLQPGQEYVI 360

Query: 361 RVLSAGNYVQEEREIRVFFDVVPNRQVFREAETIATISLESSDFSEVDVQKRIDYLLAAA 420
           RVLSAGNYVQEEREIRVFFDVVPNRQVFREAETIATISLESSDFSEVDVQKRIDYLLAAA
Sbjct: 361 RVLSAGNYVQEEREIRVFFDVVPNRQVFREAETIATISLESSDFSEVDVQKRIDYLLAAA 420

Query: 421 QFRARREGILGPIQVEDGRIKTLIDFIEQLRRQADNPPNEVRAIAAEDTSVVGPLKIRII 480
           QFRARREGILGPIQVEDGRIKTLIDFIEQLRRQADNPPNEVRAIAAEDTSVVGPLKIRII
Sbjct: 421 QFRARREGILGPIQVEDGRIKTLIDFIEQLRRQADNPPNEVRAIAAEDTSVVGPLKIRII 480

Query: 481 ALRGNQIMFEN 491
           ALRGNQIMFEN
Sbjct: 481 ALRGNQIMFEN 491


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 44/183 (24%), Positives = 91/183 (49%), Gaps = 11/183 (6%)

Query: 87   VAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQSRNLRQ 146
            V K++LE   +  ++ ++E+ + +EE++L+  R +EL +      Q  ++ SE+ R  R 
Sbjct: 1607 VLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQK-SEEER--RA 1663

Query: 147  EVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKVLARQREQVQS 206
            EV     E++QL+E+              +  ++Q   + ++ +   +K    QR++++ 
Sbjct: 1664 EVRKFQVEKSQLDEK----AMLLETKYNDLVNKEQAWKRDEDTV---KKTTDSQRQEIEK 1716

Query: 207  LEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQRE 266
            L K   +L+A+  +L+ E N+  ++ID L   +   D        KL+ L  E+S  + +
Sbjct: 1717 LAKELDNLKAENSKLK-EANEDRSEIDDLMLLVTDLDEKNAKYRSKLKDLGVEISSDEED 1775

Query: 267  VEE 269
             EE
Sbjct: 1776 DEE 1778



 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 36/229 (15%)

Query: 79   DDILAQLRVAKTELEQASQAKEEIE---SELTAVREEQQL----VQERSRELNRNYTKAL 131
            D+  +Q+ + K +LE A+ A +E     SELT  REE +      +    EL      + 
Sbjct: 1050 DEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSE 1109

Query: 132  QLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIA 191
            + L+ V E   +L++E   L  E  +  +Q +             +    +L K +E+IA
Sbjct: 1110 KALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIA 1169

Query: 192  QQEKV----LARQREQVQSLEKRFASLEAQRQQLQAEI-----------NQRDTKIDQLD 236
             +E+     +++  +++ S ++   S++ +  +L+ E+           N + ++ID L+
Sbjct: 1170 NKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALN 1229

Query: 237  QAIAA--KDND------------IQAREEKLQGLETELSFLQREVEELE 271
              I    K N+            +++   K++ L+ E +F ++EV ELE
Sbjct: 1230 LQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELE 1278



 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 65/388 (16%), Positives = 174/388 (44%), Gaps = 40/388 (10%)

Query: 79   DDILAQLRVAKTEL----EQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLL 134
            +D+ AQL+  + ++     Q ++   ++  E+T+ ++E + +++++ EL       ++ +
Sbjct: 1155 EDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGE----VKAM 1210

Query: 135  RRVSEQSRNL-RQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQ 193
            +  SE+  NL + E+  L+ +  +L ++ +            V+    ++ + Q+    +
Sbjct: 1211 KSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFK 1270

Query: 194  EKVLARQREQVQSLE---KRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQARE 250
            EK ++   +++++ E    ++  L+ + ++++ E++ + T++    + I       +  E
Sbjct: 1271 EKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSE 1330

Query: 251  EKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQLLAFGGLRVVS--SEAVTG 308
             +L  L+   S  ++  EE     ++  +++ Q     R +LL  G   +    SE +  
Sbjct: 1331 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKER-KLLNEGSSTITQEYSEKINT 1389

Query: 309  AVDQLLRQANRTALQLVKTPNMPVPDEPIVRVTTAQVDSITSQLQPGQEYVIRVLSAGNY 368
              D+L+R  N   L+  +  N         R    +V     +L   ++  I+ L     
Sbjct: 1390 LEDELIRLQNENELKAKEIDN--------TRSELEKVSLSNDELLEEKQNTIKSL----- 1436

Query: 369  VQEEREIRVFFDVVPNRQVFREAETIATISLESSDFSEVDVQKRIDYLLAAAQFRARREG 428
               + EI  + D     ++ R  E + +I  +    ++ D++   + L AA + +A+ E 
Sbjct: 1437 ---QDEILSYKD-----KITRNDEKLLSIERD----NKRDLESLKEQLRAAQESKAKVEE 1484

Query: 429  ILGPIQVEDGRIKTLIDFIEQLRRQADN 456
             L  ++ E  + K  ++  +++ ++ ++
Sbjct: 1485 GLKKLEEESSKEKAELEKSKEMMKKLES 1512



 Score = 45.1 bits (105), Expect = 5e-07
 Identities = 55/267 (20%), Positives = 113/267 (42%), Gaps = 56/267 (20%)

Query: 68   SKSLREGVF----QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQL-------V 116
            +KSL+E +     ++  I   L   K +    S+ KE I  EL   +   Q        +
Sbjct: 901  TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKL 960

Query: 117  QERSRELNRNYTKALQ-----LLRRVSE-------QSRNLRQEVANLSAERAQLNEQKDX 164
             E+ + L  NY K +Q     L++ V E       Q  NL+ ++ ++S E+     ++  
Sbjct: 961  TEKLKSLANNY-KDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGS 1019

Query: 165  XXXXXXXXXXXV----KLRDQELSKRQERIAQQEKVLARQREQVQSLE-------KRFAS 213
                       +    + +++ +SK      + E  ++  +E++++          + + 
Sbjct: 1020 IEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISE 1079

Query: 214  LEAQRQQLQAEI-------NQRDTKIDQLDQAIA-AKDNDIQAREEKLQ----------- 254
            L   R++L+AE+       N+ +TK++  ++A+   K+N+   +EEK+Q           
Sbjct: 1080 LTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQ 1139

Query: 255  --GLETELSFLQREVEELERYYQDYQE 279
               L   L  L++E E+L    + Y+E
Sbjct: 1140 LNSLRANLESLEKEHEDLAAQLKKYEE 1166



 Score = 44.7 bits (104), Expect = 7e-07
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 21/226 (9%)

Query: 69   KSLREGVFQLDDILAQLRVAKTELEQ-ASQAKEEIESELTAVREEQQLVQERSRELNRNY 127
            +SL+E +    +  A++     +LE+ +S+ K E+E     +++ +  ++    EL  + 
Sbjct: 1466 ESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSM 1525

Query: 128  TKALQLLRRVSEQSRNLRQEVANLSAERAQL-----NEQKDXXXXXX-----XXXXXXVK 177
                +   ++ +  ++  +++ NL  E++ L       +KD                 ++
Sbjct: 1526 ETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELE 1585

Query: 178  LRDQELSKRQERI---AQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQ 234
               QEL+  QE+I   A++  VL   + +++ +E+     +A+ +  Q E     +++ +
Sbjct: 1586 TVKQELNNAQEKIRINAEENTVL---KSKLEDIERELKDKQAEIKSNQEEKELLTSRLKE 1642

Query: 235  LDQAIAAKDNDIQAREE----KLQGLETELSFLQREVEELERYYQD 276
            L+Q + +     Q  EE    +++  + E S L  +   LE  Y D
Sbjct: 1643 LEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYND 1688



 Score = 44.7 bits (104), Expect = 7e-07
 Identities = 48/226 (21%), Positives = 102/226 (45%), Gaps = 37/226 (16%)

Query: 89   KTELEQASQAKEEI-ESELTAVREEQQLVQERSRELNRNYTKALQL-------LRRVSEQ 140
            ++ELE+ S + +E+ E +   ++  Q  +     ++ RN  K L +       L  + EQ
Sbjct: 1412 RSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQ 1471

Query: 141  SRNLRQEVANL-----------SAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQER 189
             R  ++  A +           S E+A+L + K+            ++  + EL    E 
Sbjct: 1472 LRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLEST----IESNETELKSSMET 1527

Query: 190  IAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQA--IAAKDN--- 244
            I + ++ L + ++   S E+   +L+ ++  L + IN+ +  I++L     I AK     
Sbjct: 1528 IRKSDEKLEQSKK---SAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSEL 1584

Query: 245  -----DIQAREEKLQGLETELSFLQREVEELERYYQDYQ-ELRGQQ 284
                 ++   +EK++    E + L+ ++E++ER  +D Q E++  Q
Sbjct: 1585 ETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQ 1630



 Score = 44.7 bits (104), Expect = 7e-07
 Identities = 41/199 (20%), Positives = 89/199 (44%), Gaps = 6/199 (3%)

Query: 77   QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRR 136
            +LD    +L++   ++   S+AKE+ ESEL+ +++     ++ + E        +Q+  +
Sbjct: 1304 ELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQ 1363

Query: 137  VSEQSRNLRQEVANLSAER--AQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQE 194
              E+ R L  E ++   +    ++N  +D             K  D   S+ ++     +
Sbjct: 1364 AFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSND 1423

Query: 195  KVLARQREQVQSLEKRFASLEAQ--RQQLQAEINQRDTK--IDQLDQAIAAKDNDIQARE 250
            ++L  ++  ++SL+    S + +  R   +    +RD K  ++ L + + A        E
Sbjct: 1424 ELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVE 1483

Query: 251  EKLQGLETELSFLQREVEE 269
            E L+ LE E S  + E+E+
Sbjct: 1484 EGLKKLEEESSKEKAELEK 1502


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 51.2 bits (121), Expect = 7e-09
 Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 2/202 (0%)

Query: 77  QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRR 136
           QL ++  Q R A+   EQ  +    +  + T + ++Q   Q++  EL +N     Q L  
Sbjct: 735 QLMEMRQQQREAQLHGEQTERDIARLSQQQTQINQQQINQQQKLAELQQNLALLQQSLPP 794

Query: 137 VSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKV 196
           + +Q  + +Q++  L  E +Q ++Q               + + Q L + ++ +   +  
Sbjct: 795 LEQQLASAQQQLTAL--ETSQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLKDLQNS 852

Query: 197 LARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGL 256
             R  E++   +++ A  +AQ   L  E  Q    + +++ AI   +  +    EKL   
Sbjct: 853 SQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGST 912

Query: 257 ETELSFLQREVEELERYYQDYQ 278
           + E   L+ ++ +L    Q+ Q
Sbjct: 913 KQERDRLETQLNQLRSQQQEQQ 934



 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 45/231 (19%), Positives = 106/231 (45%), Gaps = 15/231 (6%)

Query: 48  LTVITGTLISASTLGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELT 107
           +  + G L+ AS  G +   S++ R G+ +   ++++      +L Q  Q  ++++    
Sbjct: 663 IVTLEGDLLEAS--GAMSGGSRNQRSGL-RFGTMVSEDTAEVKQLRQRLQDIQQVQG--- 716

Query: 108 AVREEQQLVQE--RSRELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXX 165
             R E+ L++   RSR+L +   +  Q  R          +++A LS ++ Q+N+Q+   
Sbjct: 717 --RNEELLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARLSQQQTQINQQQINQ 774

Query: 166 XXXXXXXXXXVKLRDQELSKRQERIAQQEKVL-----ARQREQVQSLEKRFASLEAQRQQ 220
                     + L  Q L   ++++A  ++ L     ++  +Q Q+++ +  ++EA+ Q+
Sbjct: 775 QQKLAELQQNLALLQQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQIQIRTVEAEYQR 834

Query: 221 LQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQREVEELE 271
               + Q +  +  L  +    +  I   +EK+   + +   L +E E+L+
Sbjct: 835 QLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLK 885



 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 79/350 (22%), Positives = 139/350 (39%), Gaps = 47/350 (13%)

Query: 106 LTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQSRNLRQEVANLSA-----ERAQLNE 160
           LT V++ ++  Q  + EL R   + L   R+ +E+ + LRQ+V          +   + +
Sbjct: 200 LTEVQDREERCQIIATELERTLER-LAADRQKAEKYQALRQQVQEKQGWAKVIQYKAVEQ 258

Query: 161 QKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKVLARQREQVQSLEK--------RFA 212
           Q+              +   Q L +R + I  Q+  L +   QV++L +        + A
Sbjct: 259 QRQKLWGQLERDREQSQQIQQALDQRSQAIQTQQTELEKLNAQVKALGEEEQLAVAAQLA 318

Query: 213 SLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQRE-VEELE 271
           + +AQR QLQ   N  D +I    Q +     +I   +++   ++ E SF   + + +LE
Sbjct: 319 TQKAQRDQLQQRYNDGDRQITNHQQQVGQIQAEISQSQQQFLHIQQEKSFHNTQTLPQLE 378

Query: 272 RYYQDYQELRGQQIAILRGQLLAFGGLRVVSSEAVTGAVDQLLRQANRTALQLVKTPNMP 331
              Q  Q    QQ+  LR Q  A       +SEA      QL R  N+   +L+      
Sbjct: 379 AAVQTSQ----QQLEQLRHQAQAIAS----ASEAWVQEQTQLSRTVNQLQDELIPQ---- 426

Query: 332 VPDEPIVRVTTAQVDSITSQLQPGQEYVIRVLSAGNYVQEEREIRV----FFDVVPNRQV 387
                  R   AQ++    QL      +  +L+  +   EE++       F       Q+
Sbjct: 427 -------RSQLAQLEERQQQLLTNLAELTPLLTKVSVELEEKQFAQGQFNFQGEALTSQI 479

Query: 388 FREAETIATISLESSDFSEV---------DVQKRIDYLLAAAQFRARREG 428
              A  +A +  E S   E          + Q+++D L AA+Q +   +G
Sbjct: 480 QTLASDLAQLEQERSLLQETQTRLLKEQQEKQRQLDKLEAASQAQQEVQG 529


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score = 48.5 bits (114), Expect = 5e-08
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 23/235 (9%)

Query: 79  DDILAQLRVAKTELEQASQA----KEEIESELTAVREEQQLVQERSRELNR---NYTKAL 131
           DD+L + R    +L+    A     +E+  EL  +++E+ L+ ++   L     N  + L
Sbjct: 295 DDLLQENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQL 354

Query: 132 QLLRRVSEQSRNLRQEV--ANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQER 189
            LL  ++ Q   L+ ++  A  + +R  L EQ++                D+   K  + 
Sbjct: 355 ALLPVLNNQINELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDEN-EKYDDL 413

Query: 190 IAQQEKVLARQREQVQSLEKRFASLEAQRQQ-LQAEINQRDTKIDQLDQAIAAKDNDI-- 246
           + Q E +      +   L+ +  +L    Q+ + A  ++ D  +D+++    +KDND   
Sbjct: 414 LNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWT-RSKDNDFNN 472

Query: 247 ---------QAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQL 292
                    +A +EKL GL  +   LQ ++ ELE + ++   L   Q+  L+ QL
Sbjct: 473 TKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQL 527


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 39/184 (21%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 84   QLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQSRN 143
            Q+   K +L++    K+ +E +      E +  Q+   +   N  K   LL RV   S  
Sbjct: 869  QINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSET 928

Query: 144  LRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKVLARQREQ 203
            L+++  +L +E+ +++ +K             ++   Q++   QE I ++E  L +   +
Sbjct: 929  LQKQFDDLVSEKDEISREK-------LEVAQNLEEAHQKIQGLQETIREREATLEKLHSK 981

Query: 204  VQSLEKRFASLE---AQRQQLQAEINQRDTKID----QLDQAIAAKDNDIQAREEKLQGL 256
               L K+ + L    ++ Q  Q+ I +   K++    +L   I +K+ +I++  +KL   
Sbjct: 982  NNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSS 1041

Query: 257  ETEL 260
            E +L
Sbjct: 1042 EEDL 1045



 Score = 45.1 bits (105), Expect = 5e-07
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 16/212 (7%)

Query: 69   KSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYT 128
            K + E   + +D   QL+    EL++    K+ +  +L  ++E    V++RS+     YT
Sbjct: 1532 KLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQ-----YT 1586

Query: 129  KALQLLRRVSEQS----RNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELS 184
              +  L+     S     NL++E A L  +        +                 + L+
Sbjct: 1587 DEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLN 1646

Query: 185  KRQERIAQQEKVLARQRE----QVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIA 240
              ++ I+  EK L ++ E    + +SL+ +  SL   +Q+L++++NQ   K D L  + A
Sbjct: 1647 NEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ---KTDALQISNA 1703

Query: 241  AKDNDIQAREEKLQGLETELSFLQREVEELER 272
            A  +  Q  +E  + ++     LQ ++E+  R
Sbjct: 1704 ALSSSTQKNKEITEKIKYLEETLQLQMEQNSR 1735



 Score = 42.0 bits (97), Expect = 4e-06
 Identities = 37/201 (18%), Positives = 91/201 (45%), Gaps = 21/201 (10%)

Query: 71   LREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKA 130
            ++E   +L++ + +L+      +  +  +EEI+S    +   ++ +  +   L +N   A
Sbjct: 1006 IKESKLKLENEIKRLK------DVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIA 1059

Query: 131  LQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERI 190
            +  L+ +  ++ +LR +  N   E+A LN Q              +K ++ EL K +E+I
Sbjct: 1060 MSRLQSLVTENSDLRSKNENFKKEKAALNNQ--------------LKNKESELLKMKEKI 1105

Query: 191  AQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQARE 250
               +K LA   +Q          + A+ ++ + ++ +  +   ++ +  +    + + +E
Sbjct: 1106 DNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQE 1165

Query: 251  EKLQGLETELSFLQREVEELE 271
            +K +    E S    +++ELE
Sbjct: 1166 QKKRNSLVE-SLNDSKIKELE 1185


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score = 47.8 bits (112), Expect = 8e-08
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 31/231 (13%)

Query: 69   KSLREGVFQLDDILAQLRVAKTELE----QASQAKEEIESELTAVREEQQLVQERSRELN 124
            K +++   +L  +L +L   KT+L     + S+ +EE E++   + E Q+ +Q ++   N
Sbjct: 1354 KEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNS-N 1412

Query: 125  RNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELS 184
               TKA+Q      E   + ++ +  L+ ++ + ++ K              K+RD+   
Sbjct: 1413 NFKTKAIQ------EIENSYKRGMEELNFQKKEFDKNKSRLYEYFR------KMRDEI-- 1458

Query: 185  KRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDN 244
               ER   Q K++ ++ ++  +L      LEAQ  +L  E N  D K  +L       D 
Sbjct: 1459 ---ERKESQVKLVLKETQRKANL------LEAQANKLNIEKNTIDFKEKELKAFKDKVDQ 1509

Query: 245  DIQA---REEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQL 292
            DI +   + ++L  L  E   LQ+ + E ER       L  ++I  ++ QL
Sbjct: 1510 DIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIETIKRQL 1560



 Score = 44.7 bits (104), Expect = 7e-07
 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 50/263 (19%)

Query: 73  EGVFQLDDILAQLRVAKTEL-------------------EQASQAKEEIESELTAVRE-- 111
           E +FQL + +AQ R    EL                   +Q  Q + + E+EL A ++  
Sbjct: 478 EAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQEL 537

Query: 112 -------EQQLVQERSRELNRNYTKALQLLRRVSEQSRN----------LRQEVANLSAE 154
                  E+  ++   +E + N TKA Q+    S+   +          L+ E  NL  E
Sbjct: 538 FEAKHALERSFIKLEDKEKDLN-TKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQE 596

Query: 155 RAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKVLARQR--------EQVQS 206
           + +L +++             ++ + +EL +++E + Q  K   ++R        E V S
Sbjct: 597 KQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELVAS 656

Query: 207 LEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQRE 266
           +EK+   L  + Q            + + + AI  K+ +I+A E++L         +Q +
Sbjct: 657 VEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQAD 716

Query: 267 VEEL-ERYYQDYQELRG--QQIA 286
           + +L +   Q+  EL+   Q+IA
Sbjct: 717 LAQLNQSLNQERSELQNAKQRIA 739



 Score = 41.6 bits (96), Expect = 6e-06
 Identities = 48/253 (18%), Positives = 106/253 (41%), Gaps = 43/253 (16%)

Query: 69  KSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYT 128
           K L     Q+ +  +QL   KT+  +++  +  +++E   +++E+Q + +      RN  
Sbjct: 556 KDLNTKAQQIANEFSQL---KTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERN-- 610

Query: 129 KALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKR-- 186
            A  L  R+ ++   L Q+   L        +++             V+ + + L K+  
Sbjct: 611 -AAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKLQ 669

Query: 187 ---------QERIAQQEKVLARQREQVQSLEKRFAS-------LEAQRQQLQAEINQRDT 230
                     + +A++E  +  + +++++ EK+  +       ++A   QL   +NQ  +
Sbjct: 670 DFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERS 729

Query: 231 KIDQLDQAIAAKDND-----------IQAREEKLQGLET--------ELSFLQREVEELE 271
           ++    Q IA   ND           +Q R ++LQ LE           ++ + E+++L 
Sbjct: 730 ELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLN 789

Query: 272 RYYQDYQELRGQQ 284
           R  Q +  LR +Q
Sbjct: 790 REKQAFLNLRKKQ 802


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil
           protein, putative structural protein involved in
           cytosceleton [Mycoplasma pneumoniae]
          Length = 1033

 Score = 45.1 bits (105), Expect = 5e-07
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 45/205 (21%)

Query: 77  QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQ-QLVQERSRELNRNYTKALQ--- 132
           QLD  L      + +LE+  Q  + ++ + + V +E+ +L+Q ++  L +   +  Q   
Sbjct: 362 QLDKALKHNAALQIQLEE--QLAKPLQYDQSPVLQERIELLQNQNTNLTQELNELQQKLF 419

Query: 133 -------LLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSK 185
                  LL R+ E++R L+Q + N   E  QLN                       L K
Sbjct: 420 KSQNNSLLLARLEEENRTLKQHLQNNLPEANQLN---------------------FVLEK 458

Query: 186 RQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDND 245
           + E++ Q +  L  Q EQ +   K+     A    L++EIN  +T++  L Q        
Sbjct: 459 QLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLKQT------- 511

Query: 246 IQAREEKLQGLETELSFLQREVEEL 270
                ++L  +E E +FL+ E+++L
Sbjct: 512 ----NQRLSLIERENNFLKTEIKQL 532



 Score = 42.4 bits (98), Expect = 3e-06
 Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 26/259 (10%)

Query: 77  QLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRR 136
           Q   +  +L  ++T+L    Q+ E     LT ++ + +L+QE   +L        Q   +
Sbjct: 695 QNQSLTDKLMASETQLNHLQQSDEN----LTQLQTQHELLQESYNKLQDEANHTQQQFHQ 750

Query: 137 VSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQELSKRQERIAQQEKV 196
              +     Q++A       +L + K             VK   + L+     +  Q+K 
Sbjct: 751 AQNELDAAHQQLALFKQNNEELTD-KCSNIQNELHDLNRVKTNWENLNTEHNLL--QDKY 807

Query: 197 LARQREQVQSLEKRFASLEAQRQQLQAEINQ-----RDTKIDQLDQAIAAKDNDIQAREE 251
            A+Q+EQ+Q      A ++A+ + LQ   N+      + +I  L++A  A+  D+ +  E
Sbjct: 808 -AQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEA-NAQYQDLLSAYE 865

Query: 252 KLQG----LETELSFLQR---EVEELERYYQDYQELRGQQIAILRGQLLAFGGLRVVSSE 304
            LQ     L+ EL  L +   E ++L +   +  +   Q  A L     A+  L     +
Sbjct: 866 LLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNL-----Q 920

Query: 305 AVTGAVDQLLRQANRTALQ 323
           A     D+LL Q N+  L+
Sbjct: 921 ATPPVSDELLEQFNQVQLE 939


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 34/222 (15%)

Query: 68  SKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREE-----QQLVQERSRE 122
           S  L++   QL+ +       K+  E    ++ EI   L +  +      QQLV+ +  E
Sbjct: 563 SNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENE 622

Query: 123 LNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVKLRDQE 182
             +++T  L+  ++ +EQ + L  EV  L A   +L EQ                  ++ 
Sbjct: 623 -QKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQ------------------NRH 663

Query: 183 LSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAK 242
           L    E+   +E  +      V++L+++   L++++Q + AE  +    ++ L++     
Sbjct: 664 LKNCLEK---KETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVT--- 717

Query: 243 DNDIQAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQ 284
               +  ++K+Q  + EL    +E+EE++ + ++    +G Q
Sbjct: 718 ----KNLQQKVQSQKRELEQKIKELEEIKNHKRNEPSKKGTQ 755



 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 48/272 (17%), Positives = 114/272 (41%), Gaps = 34/272 (12%)

Query: 42  RQTAVLLTVITGTLISASTLGILFTFSKSLREGVFQLDDILAQLRVAKTEL-----EQAS 96
           R T V L+  T T++      I     + +     ++   + +L V +  L     E+  
Sbjct: 388 RNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELL 447

Query: 97  QAKEEIESELTA-VREEQQLVQERSRELNRNYTKALQLLRRVSE---QSRNLRQEVANLS 152
            +   I++ L + +   +Q + + + +  +NY     L++       QS    + + +L 
Sbjct: 448 TSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLE 507

Query: 153 AERAQLNEQKDXXXXXXXXXXXX-----------------VKLRDQELSKRQERIAQQEK 195
           +ER+ L+ QK+                             +  ++Q L+++ E ++ + K
Sbjct: 508 SERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELK 567

Query: 196 VLARQREQVQSLEKRFAS-----LEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQARE 250
            +  Q E++ +L     S     + +Q + ++A +++ DT   ++ Q +  K+N+ +   
Sbjct: 568 KVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHT 627

Query: 251 EKLQGLETELSFLQR---EVEELERYYQDYQE 279
            KL+  +     LQ+   EV +L+ +  + +E
Sbjct: 628 TKLEAFQKNNEQLQKLNVEVVQLKAHELELEE 659


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 27/227 (11%)

Query: 62  GILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERS- 120
           G L    K L+     L++ LA+    + +L +  QA+E++ + L         +Q    
Sbjct: 75  GKLRRLEKDLQSVQASLENALAE----RNQLTENYQAQEKMVAALQHQLAHYDDIQSEKF 130

Query: 121 ---RELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDXXXXXXXXXXXXVK 177
              ++LN+      +LL+  +  S  L+Q V  ++  R +L +                 
Sbjct: 131 VGLQKLNQ------ELLQENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSY 184

Query: 178 LRDQELSKRQERIAQQEKVLARQREQVQSL--------EKRFASLEAQRQQLQAEIN--- 226
           +   +    ++R+A QEK+  ++ EQ Q+         E++   L A+R Q+Q E+    
Sbjct: 185 VEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELQTAR 244

Query: 227 -QRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQREVEELER 272
            Q  +   Q +   AA D  +  +EE+ QG  ++L+    ++EE ++
Sbjct: 245 QQSQSAQTQAENLQAALDR-LGQQEEQWQGERSQLTAKLNQLEEAQK 290


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.316    0.132    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,502
Number of Sequences: 78
Number of extensions: 1953
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 56
length of query: 491
length of database: 48,235
effective HSP length: 66
effective length of query: 425
effective length of database: 43,087
effective search space: 18311975
effective search space used: 18311975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000983 sll1473 
         (481 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000983 sll1473                                            919   0.0  
SYNE-PCC-01-002220 slr1212                                            128   4e-32
SYNE-PCC-01-000542 sll0821                                            119   2e-29
SYNE-PCC-01-002778 slr1969                                             88   7e-20
SYNE-PCC-01-001517 slr0222                                             62   4e-12
SYNE-PCC-01-002617 slr1759                                             60   1e-11
SYNE-PCC-01-002873 slr2098                                             46   2e-07
SYNE-PCC-01-001690 slr0473                                             43   2e-06

>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score =  919 bits (2375), Expect = 0.0
 Identities = 469/481 (97%), Positives = 469/481 (97%)

Query: 1   MGKFLIPIEFVFLAIAMTCYLWHRQNQERRRIEISIKQQTQRERFINQITQHIRQSLNLE 60
           MGKFLIPIEFVFLAIAMTCYLWHRQNQERRRIEISIKQQTQRERFINQITQHIRQSLNLE
Sbjct: 1   MGKFLIPIEFVFLAIAMTCYLWHRQNQERRRIEISIKQQTQRERFINQITQHIRQSLNLE 60

Query: 61  TVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVNANYPSILGRTFSDEVFPVEYHQ 120
           TVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVNANYPSILGRTFSDEVFPVEYHQ
Sbjct: 61  TVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVNANYPSILGRTFSDEVFPVEYHQ 120

Query: 121 AYTKGKVRAINDIDQDDIEICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGL 180
           AYTKGKVRAINDIDQDDIEICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGL
Sbjct: 121 AYTKGKVRAINDIDQDDIEICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGL 180

Query: 181 LITHQCAFTRPWQPWEVELMKQLANQVAIAIXXXXXXXXXXXXNKDLENRVEKRTQQLAA 240
           LITHQCAFTRPWQPWEVELMKQLANQVAIAI            NKDLENRVEKRTQQLAA
Sbjct: 181 LITHQCAFTRPWQPWEVELMKQLANQVAIAIQQSELYEQLQQLNKDLENRVEKRTQQLAA 240

Query: 241 TNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWT 300
           TNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWT
Sbjct: 241 TNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWT 300

Query: 301 ETEIIAHPELLTSNILLEDYQQFKQKVLSGMVSPSLELKCQKKDGSWIEIVLSAAPLLDS 360
           ETEIIAHPELLTSNILLEDYQQFKQKVLSGMVSPSLELKCQKKDGSWIEIVLSAAPLLDS
Sbjct: 301 ETEIIAHPELLTSNILLEDYQQFKQKVLSGMVSPSLELKCQKKDGSWIEIVLSAAPLLDS 360

Query: 361 EENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAF 420
           EENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAF
Sbjct: 361 EENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAF 420

Query: 421 TKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEAEVLNDSYKEKKSPL 480
           TKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEAEVLNDSYKEKKSPL
Sbjct: 421 TKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEAEVLNDSYKEKKSPL 480

Query: 481 K 481
           K
Sbjct: 481 K 481


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score =  128 bits (321), Expect = 4e-32
 Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 29/239 (12%)

Query: 33  EISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQD---GT 89
           E  + +Q +RE  + +ITQ IRQSL+L T+ NT V E++  L+ DRV+I++   D     
Sbjct: 450 EQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSV 509

Query: 90  GSAITESVNANYPSILGRTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEICLADFVKQF 149
           G+ + ESV A +  I+     +  F   Y Q Y +G+++ I DI Q  +  C  DF+ + 
Sbjct: 510 GNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQVIEDIHQSHLRQCHIDFLARL 569

Query: 150 GVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVELMKQLANQVAI 209
            V++ LV+P++                LWGLL  HQC  +R W+  E++L+KQ+ NQ  I
Sbjct: 570 QVRANLVLPLIND------------AILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFEI 617

Query: 210 AIXXXXXXXXXXXXNKDLENRVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQS 268
           AI                    E+  Q+LA+ NQ      +E ++ +  L+  +H +++
Sbjct: 618 AIQQATL--------------YEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRVKN 662



 Score = 93.6 bits (231), Expect = 1e-21
 Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 13/215 (6%)

Query: 224 NKDLENRVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQSLIA---ASPRGIFTL 280
           N +LE RVE RT QLA  NQ L  EI ++ + +  L      L  L A   +S   I + 
Sbjct: 156 NNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISK 215

Query: 281 NLADQIQIWNPTAERIFGWTETEIIAH--PELLTSNILLEDYQQFKQKVLSGMVSPSLEL 338
            L   I  WN +AER+FG+T  E+I     +L+   ++LE+     + +  G    + E 
Sbjct: 216 TLDGNITSWNESAERLFGYTAEEMIGSHITKLIPEELILEE-DLIAECIRQGQRINTYET 274

Query: 339 KCQKKDGSWIEIVLSAAPLLDSEENIAGLVAVVADITEQKRQAEQIRLLQSVV---VNTN 395
           + Q+KDG+ I++ L+ +P+ D  +N+ G   +V DIT +      +R  Q  +    N +
Sbjct: 275 QRQRKDGTKIDVALTISPIRDEHKNVVGASKIVRDITARLDVENALRESQYFIEKLANYS 334

Query: 396 DAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEE 430
             ++      +D    + +YVN    +I GYT EE
Sbjct: 335 PQILYI----LDPIAWKNIYVNYQSFEILGYTPEE 365


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score =  119 bits (298), Expect = 2e-29
 Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 12/190 (6%)

Query: 22   WHRQNQERRRIEISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLI 81
            W  +  +   ++  ++Q+  +E+ + +I   IR SLN+  +L +TV EV+  L  DRV++
Sbjct: 903  WTEKLHDYVLLKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVL 962

Query: 82   YRIWQDGTGSAITESVNANYPSILGRTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEIC 141
            ++     +G  +TES N    SI+     D  F   Y + Y +G+VRA++DI++ D+  C
Sbjct: 963  FKFNSQWSGQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLADC 1022

Query: 142  LADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVELMK 201
              + ++ + VK+ LVVP++ +              LWGLLI H+C   R WQ  +++L+ 
Sbjct: 1023 HKELLRHYQVKANLVVPVVFNEN------------LWGLLIAHECKTPRYWQEEDLQLLM 1070

Query: 202  QLANQVAIAI 211
            +LA QVAIAI
Sbjct: 1071 ELATQVAIAI 1080



 Score = 61.6 bits (148), Expect = 5e-12
 Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 36/192 (18%)

Query: 43  ERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVN-ANY 101
           E F+  +     ++L L   L   V E +  L VDRV IY+   DG+G  + E+VN A  
Sbjct: 8   EDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAEAVNRAAL 67

Query: 102 PSILGRTFSDEVFPVEYHQAYTKGKVRAINDI----------------------DQDDIE 139
           PS+LG  F  E  P +  +     +     D+                          ++
Sbjct: 68  PSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYTTVD 127

Query: 140 ICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVEL 199
            C   ++   GV S L VP++Q  +            LWG++  H  +  R +   E E 
Sbjct: 128 SCHIQYLLAMGVLSSLTVPVMQDQQ------------LWGIMAVHH-SKPRRFTEQEWET 174

Query: 200 MKQLANQVAIAI 211
           M  L+ +V++AI
Sbjct: 175 MALLSKEVSLAI 186


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 87.8 bits (216), Expect = 7e-20
 Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 35/226 (15%)

Query: 39  QTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVN 98
           Q  + + ++Q+   IRQSL+L  +LN  V  V+  L VDR++IY+           E   
Sbjct: 155 QASQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQ 214

Query: 99  ANYP--------------------SILGRTFSDEVFP--VEYHQAYTKGKVRAINDIDQD 136
              P                    ++LG    ++ F     Y Q Y KG V A++DI+  
Sbjct: 215 IPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENH 274

Query: 137 -DIEICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPW 195
                CL   ++++ V++KLV PI+   +            LWGLLI HQC   R W   
Sbjct: 275 YSSSYCLVGLLQRYQVRAKLVAPIIVEGQ------------LWGLLIAHQCHHPRQWLDS 322

Query: 196 EVELMKQLANQVAIAIXXXXXXXXXXXXNKDLENRVEKRTQQLAAT 241
           E   + Q+   +A+AI              + E RV +RT++L  T
Sbjct: 323 EKNFLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDT 368


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 34/243 (13%)

Query: 243 QSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQ-----IWNPTAERIF 297
           Q +  +I+ ++  +A L+  N+  + L+     G+F     +Q       +WNP  + I 
Sbjct: 656 QCIVHDITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNIT 715

Query: 298 GWTETEI--IAHPELLTSNILLEDYQQFKQKVLS-GMVSPSLELKCQKKDGSWIEIVLSA 354
           G+++ EI      E L S+   ++  + + K ++ G+     E +  ++DG+   + +S 
Sbjct: 716 GYSQEEINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMVKEEWQIIRRDGALRTVEIST 775

Query: 355 APLLDSEENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVV--ITEAEPIDDPGPR 412
           A  L +  N   ++AV+ DIT+QKRQ +        ++  N+A +  I E  PI   G R
Sbjct: 776 A--LITSNNQTNILAVIQDITDQKRQLQ--------IIQNNEATLRCIVENLPIFF-GMR 824

Query: 413 IL------YVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTE----LDRVRQAISQWQSV 462
            +      Y+N +F  +TGYT +EM  + P + Q  K  R E    L++ R  + +W   
Sbjct: 825 TINFSNWYYINPSFESLTGYTPDEMY-EDPLLWQ--KIHREEYAENLEQARPNLGEWTIF 881

Query: 463 TVE 465
           ++E
Sbjct: 882 SME 884



 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 20/220 (9%)

Query: 224 NKDLENRVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLA 283
           N++LE  +E+RT +L ++N  L  EI E+++    L       ++L+  +   I  + + 
Sbjct: 511 NENLEVLIEERTSELESSNSQLLQEIIEKEQVSITLTTQEAKYRALVRDAGDAIILITID 570

Query: 284 DQIQIWNPTAERIFGWTETEIIAHPELLTSNILLEDY----QQFKQKVLSGMVSPSLELK 339
             +   N  A  + G+ + E+I H  LL   +L  ++    + F + +    +S   +++
Sbjct: 571 FIVLEVNYRAVELSGYDQEELIGH-SLLDLRLLTPEFYAQQRHFWRTLKREQISQLTDVR 629

Query: 340 CQKKDGSWIEIVLSAAPLLDSEENIAGLVAVVADITEQKRQAEQI--------RLLQSVV 391
             KK G  I + +SA+ +  + EN + +  +V DIT QK    Q+        +LL+ +V
Sbjct: 630 LVKKSGELISVDISASVI--TYENHSIVQCIVHDITLQKTIQAQLQRENYFRRQLLEKMV 687

Query: 392 VNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEEM 431
                  V  E E    P  +    N     ITGY+ EE+
Sbjct: 688 ---EGLFVCYEVEQF--PFLQFTVWNPMMKNITGYSQEEI 722


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 60.5 bits (145), Expect = 1e-11
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 21/223 (9%)

Query: 28  ERRRIEISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQD 87
           +R++ +  ++++  +   + +I+Q IR+SL    +  T   +V  +  V R LI+   + 
Sbjct: 570 DRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEA 629

Query: 88  GTGSA--ITESVNANYPSILGRTFSDEVFPVEYHQAYTKG-KVRAINDIDQDDIEICLAD 144
            T     + E +   + S+L    + E     Y     +G +  A+ D+DQD        
Sbjct: 630 TTLQVPVVAEYLGGQFTSLLAGEIAVEQ---AYDPTIIQGDRAMAVVDLDQDLNSTHTKA 686

Query: 145 FVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVELMKQLA 204
           F ++F VKS L V      +A+            G++  HQC   R W   E+EL++ +A
Sbjct: 687 FYQRFQVKSFLAVRTSYQGKAN------------GIIALHQCDRQRVWTADEIELLEAIA 734

Query: 205 NQVAIAIXXXXXXXXXXXXNKDLENR---VEKRTQQLAATNQS 244
            Q+ IA+             ++L  +   +EK T    A N++
Sbjct: 735 EQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRA 777


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 248 EISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIWNPTAERIFGWTETEIIAH 307
           EIS + + +  L  T    + +I  +P GI  L+    I + N + E++FG+++TE+I  
Sbjct: 254 EISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQTELIGQ 313

Query: 308 PELL--TSNILLEDYQQFKQKVLSGMVSP----SLELKCQKKDGSW--IEIVLSAAPLLD 359
              L   + +L +     ++    G   P      E+   + DGS   IE+ L++ P L 
Sbjct: 314 SIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLS 373

Query: 360 SEENIAGLVAVVADITEQKRQAEQI----RLLQSVVVNTNDAVVIT 401
             E    + A V DI+ ++   +QI      LQSV+ +    V IT
Sbjct: 374 QRE--MNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAIT 417


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 36/162 (22%)

Query: 47  NQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVNANYPSILG 106
           N     +RQ  NL    +  V EV+ +   DRV++YR  ++  G  I E    +    LG
Sbjct: 141 NAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLG 200

Query: 107 RTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEI------------------------CL 142
             + +   P    + +    +R I D+    + +                        C 
Sbjct: 201 LHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCH 260

Query: 143 ADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITH 184
             ++K  GV + L + +++              +LWGL+  H
Sbjct: 261 LTYLKNMGVGASLTISLIKDG------------HLWGLIACH 290


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,578
Number of Sequences: 78
Number of extensions: 1913
Number of successful extensions: 52
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 20
length of query: 481
length of database: 48,235
effective HSP length: 66
effective length of query: 415
effective length of database: 43,087
effective search space: 17881105
effective search space used: 17881105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-000985 sll1475 
         (297 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-000985 sll1475                                            550   e-159
SYNE-PCC-01-001517 slr0222                                            167   4e-44
SYNE-PCC-01-000295 sll0474                                            122   2e-30
SYNE-PCC-01-000891 sll1353                                            108   3e-26
SYNE-PCC-01-002778 slr1969                                            102   1e-24
SYNE-PCC-01-001509 slr0210                                            101   3e-24
SYNE-PCC-01-001280 sll1871                                            101   3e-24
SYNE-PCC-01-001132 sll1672                                             99   2e-23
SYNE-PCC-01-002879 slr2104                                             97   6e-23
SYNE-PCC-01-000800 sll1228                                             96   2e-22
SYNE-PCC-01-002873 slr2098                                             95   3e-22
SYNE-PCC-01-001306 sll1905                                             91   4e-21
SYNE-PCC-01-001294 sll1888                                             81   4e-18
SYNE-PCC-01-002617 slr1759                                             80   8e-18
SYNE-PCC-01-001690 slr0473                                             72   2e-15

>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score =  550 bits (1417), Expect = e-159
 Identities = 280/297 (94%), Positives = 280/297 (94%)

Query: 1   MRFNDSAVEVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDXXXXXXXXXXXXXXX 60
           MRFNDSAVEVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRD               
Sbjct: 1   MRFNDSAVEVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLALE 60

Query: 61  XXKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKN 120
             KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKN
Sbjct: 61  REKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKN 120

Query: 121 MVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKA 180
           MVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKA
Sbjct: 121 MVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKA 180

Query: 181 LVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFE 240
           LVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFE
Sbjct: 181 LVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFE 240

Query: 241 PFHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLPRA 297
           PFHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLPRA
Sbjct: 241 PFHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLPRA 297


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  167 bits (423), Expect = 4e-44
 Identities = 91/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)

Query: 63   KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMV 122
            +EL+  K++F  + SHEFRTPL++ +   +LL +     L  +K+ + ++ IQNS + + 
Sbjct: 934  RELNEAKSQFVDIVSHEFRTPLTSIIGFGELL-SKYFDRLSTEKKQQYINNIQNSSQRLK 992

Query: 123  QLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQ-DTKAL 181
            QL+DD+L I+R +A K+E     ++L+ L    IE     +  ++ F+     + D  +L
Sbjct: 993  QLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSL 1052

Query: 182  VDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEP 241
            VD RL+R IL N+LSNAIKYS  G  I + +S D E ++F+V D+GIGI  +DQ+++FE 
Sbjct: 1053 VDVRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQDQEKLFEA 1112

Query: 242  FHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 288
            FHR  NV +I GTGLGL + K+ V+   G+I + S   +GTT+ I L
Sbjct: 1113 FHRASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKL 1159


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  122 bits (305), Expect = 2e-30
 Identities = 81/242 (33%), Positives = 136/242 (56%), Gaps = 26/242 (10%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           ++LK  F +  SHE RTPL++ L   + L+N     L+  K+ ++L  ++NS ++++ L+
Sbjct: 415 TQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN-GKQVQSLEIVENSGRHLLSLI 473

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLF-------QQFIEEIQLSVSDQYYFDFICSAQDT 178
           +DIL +++ EAG+++ + N   +  L        QQF  + Q+++S +     I +  D 
Sbjct: 474 NDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSE----IIPNLPDV 529

Query: 179 KALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSE----------QIIFEVTDQGI 228
             LVD+R +  +L NLL+NAIK++P GG++ +   L  E          Q+ F V D GI
Sbjct: 530 --LVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGI 587

Query: 229 GISPEDQKQIFEPFHRGKNV--RNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTI 286
           GI  +    IFEPF +  +   R   GTGLGL + KK V+LH GS+ + S +++G+   I
Sbjct: 588 GIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKI 647

Query: 287 CL 288
            +
Sbjct: 648 TI 649


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  108 bits (269), Expect = 3e-26
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 17/231 (7%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           +R+K+ F +  SHE RTP++  L    LL   +   L   +  + L+ I +S K ++ L+
Sbjct: 597 NRVKSEFLANISHEIRTPMNAILGFCDLLLQKD---LSLSQTKKYLNAIGSSSKILLALI 653

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV--D 183
           DDIL I++ EAGKL  +   +DL+++ ++  +        +     I   +     +  D
Sbjct: 654 DDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFD 713

Query: 184 ERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQI---------IFEVTDQGIGISPED 234
              +R IL NL+ NA+K++  G Q+ I + ++  Q+           EVTD GIGI+PED
Sbjct: 714 AVRLRQILFNLVGNALKFTEEG-QVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPED 772

Query: 235 QKQIFEPF--HRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT 283
           Q +IF+ F   +G++ R   GTGLGL + ++   L  G I L S + +G+T
Sbjct: 773 QAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGST 823


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  102 bits (255), Expect = 1e-24
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 68  LKTRFFSMASHEFRTPLST--ALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           LK++F +  SHE RTPL++   L+A  L      A L P K+   L  IQ + K ++  +
Sbjct: 378 LKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQI 437

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQ-LSVSDQYYF--DFICSAQDTKALV 182
           + I+ +++ E+G+   N     L  L Q  I  +  +++  Q     D+  +    +   
Sbjct: 438 NSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCA 497

Query: 183 DERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPF 242
           D+  +  IL+ LL+NA+K++P  G + + +  +S Q IF+V D GIGI+ +    +FE F
Sbjct: 498 DQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAF 557

Query: 243 H-RGKNVRNITGT-GLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLP 295
              G +  +   T G+GL + K+ V+LH G I ++S+  QGT  T  + + N  P
Sbjct: 558 KVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNFPP 612


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  101 bits (251), Expect = 3e-24
 Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 5/214 (2%)

Query: 78  HEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAG 137
           HEFRTPL+  +  A++L +     L+P K+ + +    NS ++++ L++D L +++ +A 
Sbjct: 195 HEFRTPLTAIIGFARMLRDELYGKLNP-KQHQYVQGTLNSAEHLLSLVNDFLDLSKIDAR 253

Query: 138 KLEFNPNWLDLKLLFQQFIEEIQLSVSD-QYYFDFICSAQDTKALVDERLVRSILSNLLS 196
             E     + ++ L    I  +Q    + Q   +           VD+R  + IL NLLS
Sbjct: 254 CEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILINLLS 313

Query: 197 NAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPFHRGKNVRNIT--GT 254
           N +K++P G  + +A+    + +IF V D GIGI PEDQ+ +F+PF +  +  +    GT
Sbjct: 314 NGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEKGT 372

Query: 255 GLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 288
           GLGL ++++   LH G I L S    G+  +  L
Sbjct: 373 GLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAIL 406


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  101 bits (251), Expect = 3e-24
 Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 69  KTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDI 128
           K+ F +  SHE RTPL+  +  +++L   E   LD ++   +L +I  S K+++ L++D+
Sbjct: 438 KSIFLANMSHELRTPLNAIIGYSEMLIE-EAEDLDSEELVPDLDKILRSGKSLLALINDL 496

Query: 129 LIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQ-LSVSDQYYFDFICSAQDTKALVDERLV 187
           L I++ EAGK+E      +LK L    ++ I  L  ++    +   S +  +   D   +
Sbjct: 497 LDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLESEEVYGDLIKL 556

Query: 188 RSILSNLLSNAIKYSPGG--GQIKIALSLDSEQ-IIFEVTDQGIGISPEDQKQIFEPFHR 244
           R  + NLLSNA K++  G    I     +D +  + F+V D GIG++ E   ++F+PF +
Sbjct: 557 RQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQ 616

Query: 245 GKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLPRA 297
             +   R   GTGLGL + +K   +  G I L S +  G++ TI L +Y  L  A
Sbjct: 617 ADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLPKYAQLNSA 671


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 98.6 bits (244), Expect = 2e-23
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 23/243 (9%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           ++ K+ F +  SHE R+PL+  +  +QL+  ++     P ++  N   IQ S + ++ L+
Sbjct: 362 AKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNL---PMEQYENAGIIQRSGEYLLNLI 418

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV--D 183
           ++IL  ++ EAGK   N +  DL LL     + + L  +++          D    V  D
Sbjct: 419 NNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGD 478

Query: 184 ERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQ-----------------IIFEVTDQ 226
           E  +R IL NLLSNAIK++  G  +  +   ++EQ                 + F + D 
Sbjct: 479 EIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDT 538

Query: 227 GIGISPEDQKQIFEPFHRGKNVRNIT-GTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVT 285
           G GIS  +   +FE F + ++ RN   GTGLGL + ++ + L  G I + S VDQGTT +
Sbjct: 539 GKGISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFS 598

Query: 286 ICL 288
             +
Sbjct: 599 FSI 601


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 97.1 bits (240), Expect = 6e-23
 Identities = 71/235 (30%), Positives = 130/235 (55%), Gaps = 18/235 (7%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRN-LHRIQNSVKNMVQL 124
           ++ K+ F +  SHE RTP++  +  ++L+  +++       + RN L ++Q + + ++ +
Sbjct: 455 TKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLT-----SQQRNYLQKVQYAGELLLGI 509

Query: 125 LDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQ-YYFDFICSAQDTKALVD 183
           +++IL  ++ EAGKLE       ++ +       + +    +    +F    +    LV 
Sbjct: 510 INNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVG 569

Query: 184 ERL-VRSILSNLLSNAIKYSPGGGQIKIA---LSLDSEQ--IIFEVTDQGIGISPEDQKQ 237
           +RL +  IL NL +NA+K++   G+I I    L  ++EQ  + F VTD GIG++P+ Q +
Sbjct: 570 DRLRLSQILINLGNNAVKFT-NQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSK 628

Query: 238 IFEPFHRGK--NVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT--VTICL 288
           +F+ F++G+    R   GTGLGL ++K   +L  G I L+S V QG+T   T+CL
Sbjct: 629 LFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCL 683


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 95.5 bits (236), Expect = 2e-22
 Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 17/230 (7%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           +R KT F +  SHE RTPL+  +  +QLL       L P + + ++  I  S +++++L+
Sbjct: 160 NRAKTEFLASISHELRTPLNAIIGFSQLLHRDPS--LAPHRPTLDI--INRSGEHLLELI 215

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV--D 183
           +DIL +++ EAG+   N   +D   L        QL   ++     +  + +    +  D
Sbjct: 216 NDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTD 275

Query: 184 ERLVRSILSNLLSNAIKYSPGGG---QIKIALSLDSEQ-------IIFEVTDQGIGISPE 233
              +R +L NLL+NAIK++  GG   ++K   +  +++       + F V+D G GI+  
Sbjct: 276 GGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAH 335

Query: 234 DQKQIFEPFHRGKN-VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGT 282
           +  ++F PF + +  +++  G GLGL +++K V L  G I ++S VDQG+
Sbjct: 336 EMDELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGS 385


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 94.7 bits (234), Expect = 3e-22
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 18/245 (7%)

Query: 63  KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMV 122
           +E SR+K  F +  SHE RTP++  +    L   ++   L P +R   LH+I+ S ++++
Sbjct: 521 EEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTD---LTPRQREY-LHKIRFSGQHLL 576

Query: 123 QLLDDILIINRAEAGKLEFNPNWLDLKLLFQQ---FIEEIQLSVSDQYYFDFICSAQDTK 179
            +++DIL  ++ EAGKL       DL  +       I E   +   +  FD I       
Sbjct: 577 GVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFD-IDRNLPRH 635

Query: 180 ALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSL----DSEQIIF-EVTDQGIGISPED 234
            + D   +  IL N  +NA+K++  G  I I + L    D + +++  V D GIGI PE 
Sbjct: 636 FIGDPLRLGQILINYANNAVKFTEQG-DITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEH 694

Query: 235 QKQIFEPFHRGKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT--VTICLKR 290
              +F  F +  +   RN  GTGLGL + K+  +L  G + ++S   QG+T    +CL++
Sbjct: 695 IANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQK 754

Query: 291 YNHLP 295
            N +P
Sbjct: 755 SNVIP 759


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 90.9 bits (224), Expect = 4e-21
 Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
           +R K+ F +  SHE RTP++  +    LL ++++      ++      I+NS + ++ L+
Sbjct: 318 NRSKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLT----TQQKYFAQTIRNSGETLLTLI 373

Query: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYY--FDFICSAQDTKALVD 183
           +DIL  ++ EAGKL+      DL    ++ ++ +  S   +         +        D
Sbjct: 374 NDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGD 433

Query: 184 ERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSE-------QIIFEVTDQGIGISPEDQK 236
              +R IL NLLSNA+K++  G Q+K+ + +          QI F V D GIGI+P  Q+
Sbjct: 434 VTRLRQILVNLLSNAVKFTEAG-QVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQ 492

Query: 237 QIFEPFHRGKN--VRNITGTGLGLMVAKKCVDLHSGSILLKS 276
            +F+ F +G +   R   GTGLGL +  +   L  G+I  +S
Sbjct: 493 ALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAES 534


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score = 81.3 bits (199), Expect = 4e-18
 Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 21/240 (8%)

Query: 63  KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMV 122
           +E SRLK+ F +  +HE RTPL+  +   +L+ + ++A  + +K    +     S   ++
Sbjct: 188 EEASRLKSEFLASTTHELRTPLNGIIGFLRLILD-DMADSEAEKH-EFVEEAYQSALLLL 245

Query: 123 QLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV 182
            L++DIL + + EAG++      +D   + Q   E   L  +      F  +A +   L+
Sbjct: 246 NLINDILDLAKIEAGRVGIELEVVDFSEVLQA-TENFALPQAQNKGLSFNLTAPNQGPLL 304

Query: 183 ---DERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFE-----------VTDQGI 228
              ++R +  ++ N++ NAIK++  GG I +A+ +    +++E           V D GI
Sbjct: 305 VYGNQRWLLQVMLNIVGNAIKFTHEGG-ITVAVEVMPRTVLWEGVQKPGLLKVSVGDTGI 363

Query: 229 GISPEDQKQIFEPFHR--GKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVD-QGTTVT 285
           G+S E Q ++F+ F +  G + +   GTGLGL++++K V+   G +   S  +  G+TVT
Sbjct: 364 GVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVT 423


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 80.1 bits (196), Expect = 8e-18
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 24/243 (9%)

Query: 66   SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125
            +R K  F +M SHE RTP++  +   +LL  +++     D     +  I+ S + ++ ++
Sbjct: 775  NRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLD----YVQTIRQSGETLLTII 830

Query: 126  DDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEI-QLSVSDQYYFDFICSAQ-DTKALVD 183
            +DIL  ++ EA KL       +L+ L +  +E    ++ +      +    Q   + L D
Sbjct: 831  NDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGD 890

Query: 184  ERLVRSILSNLLSNAIKYSPGGGQIK----------------IALSLDSEQIIFEVTDQG 227
            +  +R ILSNL+ NA+K++  G  +                 + L   S +I F + D G
Sbjct: 891  QVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTG 950

Query: 228  IGISPEDQKQIFEPFHR--GKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVT 285
            IGI  + Q ++F+ F +      R   GTGLGL+++++   +  G + + S    G+   
Sbjct: 951  IGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFR 1010

Query: 286  ICL 288
             C+
Sbjct: 1011 FCI 1013


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 72.0 bits (175), Expect = 2e-15
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 6/214 (2%)

Query: 71  RFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILI 130
           +F  +ASH+ + PL+      QLLE      LD D +   +      V  M  L+DDIL 
Sbjct: 531 KFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDF-IDFAVTGVSLMQTLIDDILT 589

Query: 131 INRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALVDERLVRSI 190
             + +    +    + D++ +  + +  ++  + +      + S     A  D+  +  +
Sbjct: 590 YAKVDTQYAQLT--FTDVQEVVDKALANLKQRIEESGAEIEVGSMPAVMA--DQIQLMQV 645

Query: 191 LSNLLSNAIKYSPGGG-QIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPFHRGKNVR 249
             NL++N IK++     +IKI      +  +F V D GIGI P+  ++IF  F R     
Sbjct: 646 FQNLIANGIKFAGDKSPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRD 705

Query: 250 NITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT 283
              GTG+GL + KK ++ H G I L+S   +G+T
Sbjct: 706 EYKGTGMGLAICKKIIEGHQGQIWLESNPGEGST 739


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,267
Number of Sequences: 78
Number of extensions: 1016
Number of successful extensions: 65
Number of sequences better than 1.0e-05: 15
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 18
length of query: 297
length of database: 48,235
effective HSP length: 62
effective length of query: 235
effective length of database: 43,399
effective search space: 10198765
effective search space used: 10198765
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001039 sll1544 
         (228 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001039 sll1544                                            442   e-127
SYNE-PCC-01-000608 sll0921                                             82   1e-18
SYNE-PCC-01-001160 sll1708                                             77   5e-17
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    70   6e-15
SYNE-PCC-01-001075 sll1592                                             68   3e-14
SYNE-PCC-01-001575 slr0312                                             67   6e-14
SYNE-PCC-01-000511 sll0782                                             49   1e-08
SYNE-PCC-01-002951 ssl0564                                             42   2e-06
SYNE-PCC-01-002731 slr1909                                             42   2e-06
SYNE-PCC-01-002635 slr1783                                             41   4e-06

>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score =  442 bits (1136), Expect = e-127
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MEFDPDSLVFNARYDLFQLLVNHFNVIACLYPRLFAVSVARISSQRPNKKKVKIFTLQSE 60
           MEFDPDSLVFNARYDLFQLLVNHFNVIACLYPRLFAVSVARISSQRPNKKKVKIFTLQSE
Sbjct: 1   MEFDPDSLVFNARYDLFQLLVNHFNVIACLYPRLFAVSVARISSQRPNKKKVKIFTLQSE 60

Query: 61  ALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVEEAQQYG 120
           ALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVEEAQQYG
Sbjct: 61  ALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVEEAQQYG 120

Query: 121 ADAIFLESSLGNGEINLAVECLLQGRTYIDSRLEAIADYRKSQKDELTQREVAILRLVAE 180
           ADAIFLESSLGNGEINLAVECLLQGRTYIDSRLEAIADYRKSQKDELTQREVAILRLVAE
Sbjct: 121 ADAIFLESSLGNGEINLAVECLLQGRTYIDSRLEAIADYRKSQKDELTQREVAILRLVAE 180

Query: 181 GKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREGYLT 228
           GKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREGYLT
Sbjct: 181 GKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREGYLT 228


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 82.0 bits (201), Expect = 1e-18
 Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 17/175 (9%)

Query: 67  QQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQC--LLLLLNDHAAIVEEAQQYGADAI 124
           QQ  P VV+I   L D +G+D+ +QLK    + QC  ++L LND    V  A   GADA 
Sbjct: 46  QQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAY 105

Query: 125 FLESSLGNGEINLAVECLLQGRTYIDSRLEAI--------------ADYRKSQKDELTQR 170
            ++ S     I  A++    G  +ID  +  I              +  R S    LT+R
Sbjct: 106 CMKDSRTELLIE-AIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTER 164

Query: 171 EVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225
           E+ +L+L+ +G +N++I ++L++   TV+ +V+ I+ KL A DRT AA+  +R G
Sbjct: 165 ELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSG 219


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 77.0 bits (188), Expect = 5e-17
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 71  PLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVE--EAQQYGADAIFLES 128
           P ++V+   L    G++  KQ+K    SPQ  +++L  H    E   A   GADA  ++ 
Sbjct: 63  PDLIVMDIGLPGLDGIEATKQIKQ--TSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120

Query: 129 SLGNGEINLAVECLLQGRTYIDSRLEAIA------DYRKSQKD--ELTQREVAILRLVAE 180
           +     I LA+     G TY+D ++  +          + Q D   L++RE+ +L+L+ E
Sbjct: 121 ATLERLI-LAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVE 179

Query: 181 GKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225
           GK+N EI Q L+L+++T++ +V+ IM KL+  DR  AA+  LR G
Sbjct: 180 GKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSG 224


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 70.1 bits (170), Expect = 6e-15
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 24/165 (14%)

Query: 68  QPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVEEAQQYGADAIFLE 127
           Q  P V+++   ++  SGLD LK L+A     + L+L ++D    +      GAD   L+
Sbjct: 48  QTSPDVIILDLNMKGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLK 107

Query: 128 SS-----------LGNGEINLA--VECLLQGRTYIDSRLEAIADYRKSQKDELTQREVAI 174
            +           +  GE+ L+  ++ LL  RT+ D+ L           D LT RE+ +
Sbjct: 108 DTEPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPL-----------DSLTDREMGV 156

Query: 175 LRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAI 219
           LR +A G +N +I  +L ++  TV+ +++ ++RKLN   R +A +
Sbjct: 157 LRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 31/211 (14%)

Query: 34  LFAVSVARISSQRPNKKKVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLK 93
           LF + +    SQ P             A+ Y  QQ    VV++   L    G++   Q+K
Sbjct: 18  LFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFD-VVILDVGLPGIGGIEACHQIK 76

Query: 94  AHARSPQCLLLLLNDHAA-------IVEEAQQYGADAIFLESSLGNGEINLAVECLLQGR 146
                PQ  +L+L  H+        I  +AQ Y    +  E+ +      LA+  +  G 
Sbjct: 77  KI--HPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLV------LAIRSVAAGA 128

Query: 147 TYIDS----RLEAIADYRKSQ-----------KDELTQREVAILRLVAEGKTNSEIGQEL 191
            + D+     ++    +  S            ++ LT+RE+ IL LVA+GK+N EI  EL
Sbjct: 129 FWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIADEL 188

Query: 192 HLASSTVREYVQTIMRKLNARDRTSAAIAGL 222
           ++A  TVR +V TI+RKL  RDRT AA+  +
Sbjct: 189 YIAPGTVRVHVHTILRKLEVRDRTQAALLAI 219


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 66.6 bits (161), Expect = 6e-14
 Identities = 48/195 (24%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 34  LFAVSVARISSQRPNKKKVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLK 93
           +F   +A I ++ P+ + +       +A+  FE+  +P V ++  R+ +  G+  +  + 
Sbjct: 17  IFRQGLATIINRDPDMQVIAQAENGEQAIALFEEH-QPDVTLMDLRMPEVEGVAAISAIC 75

Query: 94  AHARSPQCLLLLLNDHAAIVEEAQQYGADAIFLESSLGNGEINLAVECLLQGRTYIDSRL 153
           A  +  + ++L   D    +    Q GA    L+ +  +  +N A+  + +G+ YI   +
Sbjct: 76  AIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLN-AIRTVHRGQKYIPPDV 134

Query: 154 EAIADYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARD 213
            A    R S   EL++RE+ +L  +A+G +N++I   L +   TV+ +V  I+ KL+  D
Sbjct: 135 GAKLVQRLSNP-ELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGD 193

Query: 214 RTSAAIAGLREGYLT 228
           RT A I  ++ G ++
Sbjct: 194 RTQAVIVAVKRGIVS 208


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 161 KSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIA 220
           K  K  L++RE  I+ L+A+G  + +I +ELH++ STV+ +V   + KLNA++R  A   
Sbjct: 303 KLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQ 362

Query: 221 GLREGYL 227
              +G++
Sbjct: 363 ATVQGFI 369


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 167 LTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225
           L+ RE+ IL LVA G TN E+ + L ++  TV  +V  I+ K N  +R       L+ G
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 120 GADAIFLESSLGNGEINLAVE-CLLQGRTYIDSRLEAIADYRKSQ--KD-ELTQREVAIL 175
           GAD I++       E+   V+ CL Q    +      + D  + Q  +D ELT  E  ++
Sbjct: 103 GAD-IYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVI 161

Query: 176 RLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAA 218
           +LVA+G  N EI   L ++  TV  +V  ++ K    +RT  A
Sbjct: 162 QLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELA 204


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 40.8 bits (94), Expect = 4e-06
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 27/200 (13%)

Query: 51  KVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHA 110
           KV +    +EA  Y  Q   P +V+    +    G   L++L+  AR     ++ L    
Sbjct: 82  KVDLAANATEAWDYL-QHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARG 140

Query: 111 AIVEEAQQY--GADAIFLESSLGNGEINLAVECLLQGRTYID------SRLEAIADYRKS 162
              +  Q Y  G DA FL       E+   V  LL  +          ++L+ I    ++
Sbjct: 141 MTGDRIQGYQTGCDA-FLSKPFDPDELEAIVRNLLARQQASSDAGSESAKLQEIYQEIRA 199

Query: 163 QKDEL-----------------TQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTI 205
            K+++                 T RE ++L LV++G  N EI  +L  +   V +YV  +
Sbjct: 200 LKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRL 259

Query: 206 MRKLNARDRTSAAIAGLREG 225
             K     RT      L+ G
Sbjct: 260 FTKTGTNSRTELVRFALQHG 279


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.136    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,618
Number of Sequences: 78
Number of extensions: 775
Number of successful extensions: 20
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 10
length of query: 228
length of database: 48,235
effective HSP length: 60
effective length of query: 168
effective length of database: 43,555
effective search space:  7317240
effective search space used:  7317240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001071 sll1583 
         (562 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001071 sll1583                                            859   0.0  
SYNE-PCC-01-000727 sll1120                                             46   3e-07
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...    45   8e-07
SYNE-PCC-01-000943 sll1424                                             43   3e-06
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036       42   4e-06

>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score =  859 bits (2220), Expect = 0.0
 Identities = 462/562 (82%), Positives = 462/562 (82%)

Query: 1   MTPLELSYPLSGLVLALGSGIYVWNSRRALEKKLAQSQPSDQPPTLIAGSGTPAVKEVAP 60
           MTPLELSYPLSGLVLALGSGIYVWNSRRALEKKLAQSQPSDQPPTLIAGSGTPAVKEVAP
Sbjct: 1   MTPLELSYPLSGLVLALGSGIYVWNSRRALEKKLAQSQPSDQPPTLIAGSGTPAVKEVAP 60

Query: 61  ENDGESPEAVIHAKGKLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLA 120
           ENDGESPEAVIHAKGKLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLA
Sbjct: 61  ENDGESPEAVIHAKGKLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLA 120

Query: 121 HYDDIQSEKFVGXXXXXXXXXXXXXXXSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSD 180
           HYDDIQSEKFVG               SDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSD
Sbjct: 121 HYDDIQSEKFVGLQKLNQELLQENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSD 180

Query: 181 QLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQEL 240
           QLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQEL
Sbjct: 181 QLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQEL 240

Query: 241 XXXXXXXXXXXXXXENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELK 300
                         ENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELK
Sbjct: 241 QTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELK 300

Query: 301 VKLETTQAEGDRLKTEKKEQAAALQSAQGQVTXXXXXXXXXXXXXXXXXGEPPSEVPEKT 360
           VKLETTQAEGDRLKTEKKEQAAALQSAQGQVT                 GEPPSEVPEKT
Sbjct: 301 VKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQENLAKAKGEPPSEVPEKT 360

Query: 361 KAVATXXXXXXXXXXXXXXXXXXXKQESPKSVQXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           KAVAT                   KQESPKSVQ                           
Sbjct: 361 KAVATAPAQEAPVVSPSPPVTVEVKQESPKSVQAEKVEPEPEPTPVPPAAQATKAPASPA 420

Query: 421 XXXXXXXXDEVLDQEEKQVKAVEKTEPPRENKTVAPVATSEDVAPTVETETITDPVATVP 480
                   DEVLDQEEKQVKAVEKTEPPRENKTVAPVATSEDVAPTVETETITDPVATVP
Sbjct: 421 KKSTAKAVDEVLDQEEKQVKAVEKTEPPRENKTVAPVATSEDVAPTVETETITDPVATVP 480

Query: 481 SNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKAPGAKL 540
           SNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKAPGAKL
Sbjct: 481 SNEEGAHPLAEKKVVILGTLNAMNREEAKTRLQNVGAECTGTPSGKTDYIVVGKAPGAKL 540

Query: 541 KKAQKLGIAQLSEAQFLELLGD 562
           KKAQKLGIAQLSEAQFLELLGD
Sbjct: 541 KKAQKLGIAQLSEAQFLELLGD 562


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 49/269 (18%)

Query: 76  KLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKFVGXXX 135
           +LR+  +D+Q VQ   E  L ER  +      Q+ M    Q + A     Q+E+ +    
Sbjct: 703 QLRQRLQDIQQVQGRNEELLLERT-VRSRQLTQQLMEMRQQQREAQLHGEQTERDIARL- 760

Query: 136 XXXXXXXXXXXXSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQNQAKAIEQ 195
                       S +  Q   +    + KL +L   +   QQ    L  +EQ  A A +Q
Sbjct: 761 ------------SQQQTQINQQQINQQQKLAELQQNLALLQQ---SLPPLEQQLASAQQQ 805

Query: 196 RLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELXXXXXXXXXXXXXXE 255
             A +     Q+ +  Q Q  +  ++++ Q++ L    D ++                  
Sbjct: 806 LTALETSQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLK------------------ 847

Query: 256 NLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQA------- 308
           +LQ +  RL ++  Q Q + +Q  A+   L + Q++L +A AE+   ++TT+A       
Sbjct: 848 DLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSE 907

Query: 309 -------EGDRLKTEKKEQAAALQSAQGQ 330
                  E DRL+T+  +  +  Q  Q Q
Sbjct: 908 KLGSTKQERDRLETQLNQLRSQQQEQQWQ 936



 Score = 44.7 bits (104), Expect = 8e-07
 Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 49/297 (16%)

Query: 65  ESPEAVIHAKGKLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQH--QLAHY 122
           ++ E +   + +  R +     ++ +LE   A+R Q  E YQA  + V   Q   ++  Y
Sbjct: 195 KTKETLTEVQDREERCQIIATELERTLERLAADR-QKAEKYQALRQQVQEKQGWAKVIQY 253

Query: 123 DDIQSEKFVGXXXXXXXXXXXXXXXSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQL 182
             ++ ++                  S +++QA+++    R + +Q     T  ++L+ Q+
Sbjct: 254 KAVEQQR-----QKLWGQLERDREQSQQIQQALDQ----RSQAIQTQQ--TELEKLNAQV 302

Query: 183 SYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQE-LX 241
             + + +  A+  +LA+Q K  + + +Q     + Q +  ++QV Q+ AE  Q QQ+ L 
Sbjct: 303 KALGEEEQLAVAAQLATQ-KAQRDQLQQRYNDGDRQITNHQQQVGQIQAEISQSQQQFLH 361

Query: 242 XXXXXXXXXXXXXENLQAALDRLGQQEEQ--------------WQGERSQLTAKLNQL-- 285
                          L+AA+    QQ EQ              W  E++QL+  +NQL  
Sbjct: 362 IQQEKSFHNTQTLPQLEAAVQTSQQQLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQD 421

Query: 286 ------------EEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQ 330
                       EE Q++L    AEL   L     E      E+K+ A    + QG+
Sbjct: 422 ELIPQRSQLAQLEERQQQLLTNLAELTPLLTKVSVE-----LEEKQFAQGQFNFQGE 473


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil
           protein, putative structural protein involved in
           cytosceleton [Mycoplasma pneumoniae]
          Length = 1033

 Score = 44.7 bits (104), Expect = 8e-07
 Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 42/299 (14%)

Query: 30  LEKKLAQSQPSDQPPTL------IAGSGTPAVKEVAPENDGESPEAVIHAKGK---LRRL 80
           LE++LA+    DQ P L      +    T   +E+      E  + +  ++     L RL
Sbjct: 377 LEEQLAKPLQYDQSPVLQERIELLQNQNTNLTQEL-----NELQQKLFKSQNNSLLLARL 431

Query: 81  EKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKFVGXXXXXXXX 140
           E++ ++++  L+N L E NQL    + Q + +   +H L     +Q E++          
Sbjct: 432 EEENRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLT----LQIEQYKFDSKKHQEQ 487

Query: 141 XXXXXXXSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQ-----------NQ 189
                     +     EV   +    +L+ +   N  L  ++  + +           N 
Sbjct: 488 LALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNL 547

Query: 190 AKAIE-QRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELXXXXXXXX 248
            K  E  R  S  KL +  HEQ  A  + Q     EQ+ QL    + + +EL        
Sbjct: 548 LKQYELMRADSDAKLKELEHEQHLAHQHHQ-----EQLAQLQRHNEALVKELDQVKATNF 602

Query: 249 XXXXXXENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQ 307
                   L  A     QQ+   + + S L A L   EE  + L + N+EL+ +L   +
Sbjct: 603 -------ELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLE 654


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 19/223 (8%)

Query: 75  GKLRRLEKDLQSVQASLENALAE----RNQLTENYQAQEKMVAALQHQLAHYDDIQ--SE 128
           G L    K L+     L++ LA+    + +L +  QA+E++ + L         +Q  S 
Sbjct: 62  GILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSR 121

Query: 129 KFVGXXXXXXXXXXXXXXXSDRLKQAVNEVAETRPKL-VQLNSLVTRNQQLSDQLSYVEQ 187
           +                  S  L+Q V  ++  R +L  Q +SL+  + +L  Q+   +Q
Sbjct: 122 ELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRDQ 181

Query: 188 NQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELXXXXXXX 247
             +K  ++R+A QEK+  ++ EQ Q+         E++   L A+R Q+Q E+       
Sbjct: 182 ELSKR-QERIAQQEKVLARQREQVQSL--------EKRFASLEAQRQQLQAEI---NQRD 229

Query: 248 XXXXXXXENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQK 290
                  + + A  + +  +EE+ QG  ++L+    ++EE ++
Sbjct: 230 TKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQREVEELER 272


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 42.4 bits (98), Expect = 4e-06
 Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 22/318 (6%)

Query: 25   NSRRALEKKLAQSQPSDQP---PTLIAGSGTPAVKEVAPENDGESPEAVIHAKGKLRRLE 81
            N+   LEK   + Q  +Q       +   G+  + +   E      + +I  + +     
Sbjct: 1346 NAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKA 1405

Query: 82   KDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDI---QSEKFVGXXXXXX 138
            K++ + ++ LE      ++L E  Q     + +LQ ++  Y D      EK +       
Sbjct: 1406 KEIDNTRSELEKVSLSNDELLEEKQ---NTIKSLQDEILSYKDKITRNDEKLLSIERDNK 1462

Query: 139  XXXXXXXXXSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQL-----SYVEQNQAK-- 191
                         +++  +V E   KL + +S      + S ++     S +E N+ +  
Sbjct: 1463 RDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELK 1522

Query: 192  -AIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELXXXXXXXXXX 250
             ++E    S EKL Q +   E+   N Q      +   L +  ++ ++++          
Sbjct: 1523 SSMETIRKSDEKLEQSKKSAEEDIKNLQ-----HEKSDLISRINESEKDIEELKSKLRIE 1577

Query: 251  XXXXENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQAEG 310
                  L+     L   +E+ +    + T   ++LE+ ++EL    AE+K   E  +   
Sbjct: 1578 AKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLT 1637

Query: 311  DRLKTEKKEQAAALQSAQ 328
             RLK  ++E  +  Q AQ
Sbjct: 1638 SRLKELEQELDSTQQKAQ 1655


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.305    0.122    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,265
Number of Sequences: 78
Number of extensions: 1935
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 18
length of query: 562
length of database: 48,235
effective HSP length: 67
effective length of query: 495
effective length of database: 43,009
effective search space: 21289455
effective search space used: 21289455
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 95 (41.2 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001075 sll1592 
         (226 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001075 sll1592                                            434   e-125
SYNE-PCC-01-001160 sll1708                                            150   3e-39
SYNE-PCC-01-000608 sll0921                                            140   3e-36
SYNE-PCC-01-001575 slr0312                                            128   2e-32
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...   102   1e-24
SYNE-PCC-01-001039 sll1544                                             68   3e-14
SYNE-PCC-01-002731 slr1909                                             65   2e-13
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    59   1e-11
SYNE-PCC-01-000518 sll0789                                             57   4e-11
SYNE-PCC-01-002221 slr1213                                             57   5e-11
SYNE-PCC-01-002033 slr0947                                             53   7e-10
SYNE-PCC-01-001437 slr0081                                             52   2e-09
SYNE-PCC-01-002486 slr1584                                             52   2e-09
SYNE-PCC-01-000511 sll0782                                             51   4e-09
SYNE-PCC-01-002788 slr1982                                             50   6e-09
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   49   1e-08
SYNE-PCC-01-000523 sll0797                                             49   1e-08
SYNE-PCC-01-000242 sll0396                                             49   2e-08
SYNE-PCC-01-002672 slr1837                                             48   2e-08
SYNE-PCC-01-000414 sll0649                                             48   2e-08
SYNE-PCC-01-002618 slr1760                                             47   4e-08
SYNE-PCC-01-002617 slr1759                                             47   5e-08
SYNE-PCC-01-002951 ssl0564                                             46   9e-08
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    45   3e-07
SYNE-PCC-01-001306 sll1905                                             43   8e-07
SYNE-PCC-01-002635 slr1783                                             42   2e-06

>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score =  434 bits (1117), Expect = e-125
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MAISPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILD 60
           MAISPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILD
Sbjct: 1   MAISPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILD 60

Query: 61  VGLPGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLA 120
           VGLPGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLA
Sbjct: 61  VGLPGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLA 120

Query: 121 IRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKS 180
           IRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKS
Sbjct: 121 IRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKS 180

Query: 181 NQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVSL 226
           NQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVSL
Sbjct: 181 NQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVSL 226


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score =  150 bits (379), Expect = 3e-39
 Identities = 84/217 (38%), Positives = 128/217 (58%), Gaps = 7/217 (3%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67
           ++IL+VEDD L +LGL   L      ++ G  ++G  A+        D++++D+GLPG+ 
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAG 127
           GIEA  QIK+  PQ+ +++LTSH+ P  I   + + A  YCVKG   E L+LAI +   G
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136

Query: 128 AFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIADE 187
           A + D       Q A     +    +P   AD  + L++RE+++L L+ +GKSNQEIA  
Sbjct: 137 ATYLDP------QIARVVVENLKPPVPEGQAD-VSSLSEREIDVLKLIVEGKSNQEIAQT 189

Query: 188 LYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLV 224
           LY++  T++ HV  I+ KL V DR QAA++A+   LV
Sbjct: 190 LYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score =  140 bits (354), Expect = 3e-36
 Identities = 87/220 (39%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67
           IRI L+ED++L R GL   L+ EP  +  GEA +G   +  + Q   DVVI+D+GLP + 
Sbjct: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63

Query: 68  GIEACHQIKK--IHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVA 125
           GI+   Q+KK  ++ Q  V+ILT + Q   +     A A  YC+K    E L+ AI++  
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123

Query: 126 AGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIA 185
            G  W D  A   I  A    +        +       LT+RELE+L L+  G SN +IA
Sbjct: 124 GGFAWIDP-AIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADIA 182

Query: 186 DELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVS 225
           ++LYI  GTV+ HV  IL KL   DRTQAA+ AI   LV+
Sbjct: 183 EKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score =  128 bits (321), Expect = 2e-32
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 16/221 (7%)

Query: 6   TSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG 65
           T+IR+L+ +D  +FR GL T ++++P + V  +AE+GE AIA   +   DV ++D+ +P 
Sbjct: 5   TTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPE 64

Query: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVA 125
           + G+ A   I  I     +++LT++     I R ++A A+GY +K    + L+ AIR+V 
Sbjct: 65  VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124

Query: 126 AGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIA 185
            G            Q           V  L++ +    L++RELE+L  +A+G SN +IA
Sbjct: 125 RG------------QKYIPPDVGAKLVQRLSNPE----LSERELEVLGSLAQGMSNADIA 168

Query: 186 DELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVSL 226
             L I  GTV+ HV+ IL KL+V DRTQA ++A++R +VSL
Sbjct: 169 TALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIVSL 209


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score =  102 bits (253), Expect = 1e-24
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 18/217 (8%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67
           +++LL++D  L R G+   +  +   +V  +   G   I+   Q   DV+ILD+ + G+ 
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64

Query: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAG 127
           G++    ++       +LILT       I  LI+A A GY +K    +TL+  I+ +A G
Sbjct: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124

Query: 128 AFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENP---LTKRELEILSLVAKGKSNQEI 184
               + I S  I+            L L     +NP   LT RE+ +L  +A G SN++I
Sbjct: 125 ----EVILSDSIKN-----------LLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQI 169

Query: 185 ADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIER 221
           A +L+I+  TV+VH+  +LRKL V  R  A +L  E+
Sbjct: 170 AAQLFISEETVKVHIRNLLRKLNVHSRVAATVLFFEQ 206


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 31/211 (14%)

Query: 18  LFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFD-VVILDVGLPGIGGIEACHQIK 76
           LF + +    SQ P             A+ Y  QQ    VV++   L    G++   Q+K
Sbjct: 34  LFAVSVARISSQRPNKKKVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLK 93

Query: 77  KI--HPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLV------LAIRSVAAGA 128
                PQ  +L+L  H+        I  +AQ Y    +  E+ +      LA+  +  G 
Sbjct: 94  AHARSPQCLLLLLNDHAA-------IVEEAQQYGADAIFLESSLGNGEINLAVECLLQGR 146

Query: 129 FWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIADEL 188
            + D+     ++    +  S            ++ LT+RE+ IL LVA+GK+N EI  EL
Sbjct: 147 TYIDS----RLEAIADYRKSQ-----------KDELTQREVAILRLVAEGKTNSEIGQEL 191

Query: 189 YIAPGTVRVHVHTILRKLEVRDRTQAALLAI 219
           ++A  TVR +V TI+RKL  RDRT AA+  +
Sbjct: 192 HLASSTVREYVQTIMRKLNARDRTSAAIAGL 222


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 17/226 (7%)

Query: 1   MAISPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILD 60
           M+ S  +  +LLV+DD    L LV    +  G  V   A +G  A+  +   + D+++ D
Sbjct: 1   MSQSKENYHLLLVDDDPNLLL-LVKDYLEYQGYQVT-TAGNGREALDLLTTTVPDMIVCD 58

Query: 61  VGLPGIGGIEACHQIKKIHPQL---PVLILTSHSQPALINRLIEAQAQGYCVKGVAAETL 117
           + +P + G     Q+++ +P +   PV+ L++  Q     + +   A  Y  K    E L
Sbjct: 59  IMMPEMDGYAFIEQVRQ-NPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEEL 117

Query: 118 VLAIRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAK 177
              ++S             ++     QH++             +  LT  E +++ LVA+
Sbjct: 118 AAQVQSCL-----------RQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQ 166

Query: 178 GKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRL 223
           G +N+EIAD L ++  TV  HV  +L K  + +RT+ A  AI++ +
Sbjct: 167 GLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 28/214 (13%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEA----EDGETAIAYVNQQLFDVVILDVGL 63
           +RILL+EDD L   GL      + GL   G A     DG+T +A +    +D V+LD+ L
Sbjct: 1   MRILLIEDDNLIGNGL------QIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTL 54

Query: 64  PGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123
           P + G+E   Q +  H  +PVLILT+        + +++ A  Y  K  A   +   +++
Sbjct: 55  PKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQA 114

Query: 124 VAAGAFWWDAIASQEIQTAFQHSSSTGAV--LPLADADGENPLTKRELEILSLVAKGK-- 179
           +    + +     ++       +  +  +   P++       LT RE ++L L    K  
Sbjct: 115 LIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPIS-------LTSREYKLLELFMLNKDR 167

Query: 180 --SNQEIADEL-----YIAPGTVRVHVHTILRKL 206
             S   I ++L      I+ G + VH++ + +KL
Sbjct: 168 VLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 17/211 (8%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQL--FDVVILDVGLPG 65
           +R+LLVED+    + L   L +E    V    +DG  A +Y++Q    + + I D  +PG
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENY--VVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPG 58

Query: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVA 125
           + G+E C +++     LP+L+LT+  Q A     ++A A  Y +K      L+  +RS+ 
Sbjct: 59  LSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQ 118

Query: 126 AGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGK----SN 181
             +     +  Q++Q   Q     G    +        LT +E ++L    K      S+
Sbjct: 119 RRS---PELQPQQLQVG-QWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSS 174

Query: 182 QEIADELYI-----APGTVRVHVHTILRKLE 207
           ++I ++L+          V   V  + RKLE
Sbjct: 175 EQIKNQLWALSAESTSNVVAAQVRLLRRKLE 205


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG-IG 67
           +IL+VED+ L     + +L +  G ++   A DG TA+  + +   D+V+LD+ + G I 
Sbjct: 4   KILIVEDERLVAQH-IAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62

Query: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAI 121
           GIE   +IK ++  +P++ LT+ S    + R  +   QGY +K    E L+  +
Sbjct: 63  GIEVAERIKSLY-SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 53.1 bits (126), Expect = 7e-10
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 12  LVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGIEA 71
           +V+D+   R  L TRLS   G +V   A DGE AIA  ++   D+V+LDV +P + G   
Sbjct: 1   MVDDEASIRRILETRLSMI-GYEVV-TAADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58

Query: 72  CHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSV 124
           C +++K    +P+++LT+    A     +E  A  Y VK  + + L   IRSV
Sbjct: 59  CQELRK-ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSV 110


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 5   PTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVN-------QQLFDVV 57
           P S RIL+VED+   R  +V  L QE G +V    +DG  A+A +        Q   D++
Sbjct: 28  PPSHRILVVEDEVSIRETIVLSL-QEEGYEVYA-VDDGRDALALLQEFSEDPGQAAVDLI 85

Query: 58  ILDVGLPGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETL 117
           ILD+ LP + G++ C  ++      P+LI+++          +E  A  Y  K  + + L
Sbjct: 86  ILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145

Query: 118 VLAIRSV 124
           V   R++
Sbjct: 146 VARCRAM 152


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67
           +RILLVEDD      L   LS +  L     A D   A  Y ++  +D+VILDV LP + 
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQ--LYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58

Query: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSV--- 124
           GI  C + +     +P+L++T+          ++A A  Y VK V    L   +R++   
Sbjct: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118

Query: 125 ----AAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKG-- 178
                     W  I    +  +    S    VL          LT++E  IL L+ +   
Sbjct: 119 GCATCQPVLEWGPI---RLDPSTYEVSYDNEVL---------SLTRKEYSILELLLRNGR 166

Query: 179 --KSNQEIADELYIAPG-----TVRVHVHTILRKLE 207
              S   I D ++         TV+VHV ++ +KL+
Sbjct: 167 RVLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKLK 202


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 28/160 (17%)

Query: 76  KKIHPQLPVLILTSHSQPALINRLIEAQAQGYC--VKGVAAETLVLAIRSVAAGAFWWDA 133
           KK+ P L  L++ +     + NRL    +  YC  + G  + T+   + +  + AF  D 
Sbjct: 207 KKLSPTLAYLLIRTTE---IFNRL----SCNYCRLIYGEISVTIEAIVEASVSEAFNTDG 259

Query: 134 IAS-QEIQTAFQH--------SSSTGAVLPLA---DADG-------ENPLTKRELEILSL 174
            +  +EI+    H        SS   ++L ++     DG       ++ L++RE EI+SL
Sbjct: 260 RSPFKEIEFLAHHVGGEFRSQSSVNQSILQISLQLPYDGFQNIKLNKHLLSEREKEIVSL 319

Query: 175 VAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQA 214
           +A+G  +++IA+EL+I+  TV+ HV+  L KL  ++R QA
Sbjct: 320 LAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQA 359


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68
           ++LLVED+E+ R  L  RL ++ G +V   A DGE A+     +   ++++D+ LP I G
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRK-GYEVV-IAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 69  IEACHQIKKIHP---QLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLV 118
             A  QIK  HP    +P++ LT+H+  +   R I A    Y  K +  + L+
Sbjct: 64  WTATKQIKG-HPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLL 115


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 26/215 (12%)

Query: 11  LLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGIE 70
           LL+ DD++    L++ L +  G DV   A +G  A+  +N+  + +V+LDV +P + GIE
Sbjct: 4   LLLVDDDIELTELLSTLLELEGFDVE-TANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61

Query: 71  ACHQIKKIHPQLPVLILTSHSQPALINRL--IEAQAQGYCVKGVAAETLVLAIRSVAAGA 128
              +I+K+   +PV++LT+  +   I+R+  +E  A     K      L+  I+++   +
Sbjct: 62  TLKEIRKV-SNVPVMMLTARGED--IDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118

Query: 129 FWWDAIASQEIQTAFQHSSSTGAVL----PLADADGEN-PLTKRELEILSLVAKGKSN-- 181
               A  S  I    +  S  G  L     +A  + EN  LT  E +IL L+ K K N  
Sbjct: 119 ----ASPSNNISNV-EILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVV 173

Query: 182 --QEIADELYIAPGT-----VRVHVHTILRKLEVR 209
             +E++ E+   P T     + +H+  + RKL  R
Sbjct: 174 SREELSLEVMEKPLTPFDRSLDMHISNLRRKLPKR 208


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQL--FDVVILDVGLPG 65
           +RILLVED+    + +   L  E    V     DG  A  Y+  Q   + + I+D  LPG
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKY--VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58

Query: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSV 124
           + G+E C +++     LPVL+LT+  +P      ++A A  Y  K      L+  +R++
Sbjct: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRAL 117


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 7   SIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGI 66
           S R+L+VE++E     +   L  E G DV+  A DG        +   D++I++  LPG+
Sbjct: 2   SHRVLVVEEEEKLARFMELELKYE-GYDVS-VARDGLKGFTQAQEFPPDLIIVNGALPGM 59

Query: 67  GGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIR 122
            G+E C +++++  ++P++++T+          ++A A  Y VK   ++     IR
Sbjct: 60  SGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIR 115


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 10  ILLVEDDELFRLGLVTRLS-QEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68
           ILLV+D+      L   L  Q   +DVA   + G+T +A      +D++ILD  LP + G
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVA---DQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 69  IEACHQIKKIHPQLPVLILTSHSQPALINRL--IEAQAQGYCVKGVAAETLVLAIRSV 124
           +E C QI+ +    PVL LT  ++  L +R+  ++A    Y +K      L+  +R++
Sbjct: 61  LEICRQIRILGHSTPVLFLT--AKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRAL 116


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 10  ILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGI 69
           IL+VEDD+     +   L +E    +     DGET +    +Q+ D+++LD+ LP + G+
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIV--TNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 70  EACHQIKKIHPQLPVLILTSHSQPALINRLI--EAQAQGYCVKGVAAETLVLAIRSV 124
           E C +I++        IL   ++   I+R+I     A  Y VK  +   LV  +R++
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRAL 128


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 3   ISPTSIRILLVEDDELFRLGLVTRLSQEPG-LDVAGEAEDGETAIAYVNQQLFDVVILDV 61
           I   + +IL+V+DD   R+ L   L +E   +++A   E+  T  A +  +   VV+LD 
Sbjct: 7   IETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPE---VVLLDA 63

Query: 62  GLPGIGGIEACHQIKKIH--PQLPVLILTSHSQPALINRLIEAQAQGYCVKGV 112
            +P + G   C  + KI+  P   VL++T     A ++R  EA A  Y  K +
Sbjct: 64  VMPVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPI 116


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 7    SIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGI 66
            +++ILL ED+ L    +  ++    G  VA  A +G+  I  + ++ +D+V++D+ +P +
Sbjct: 1189 ALQILLAEDN-LVNQKVAHQMLNNLGYPVA-IANNGQEVIDALEKKFYDLVLMDMQMPVM 1246

Query: 67   GGIEACHQIKKIHP---QLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123
             GI AC  I++  P   Q  ++ +T+++ P      ++A   GY  K ++   L   ++ 
Sbjct: 1247 DGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQD 1306

Query: 124  VAA 126
             +A
Sbjct: 1307 TSA 1309


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 46.2 bits (108), Expect = 9e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 164 LTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIE 220
           L+ RELEIL LVA G +NQE+++ L I+  TV  HV  IL K    +R +    A++
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68
           +IL+VED+   R  +   LSQ+   DV  EA D +TAI  + +    +++LD  LPG  G
Sbjct: 4   KILIVEDECAIREMIALFLSQKY-YDVI-EASDFKTAINKIKENP-KLILLDWMLPGRSG 60

Query: 69  IEACHQIKK--IHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAA 126
           I+    IKK   +  +P+++LT+ S        + A A  Y  K  + + L+  I +V  
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV-- 118

Query: 127 GAFWWDAIASQEIQ 140
               W  I  Q+ Q
Sbjct: 119 ----WRRIYEQQSQ 128


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 10  ILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGI 69
           ++LV DD    + +++ L +  G         G  A+  V Q   D+++LD+ +PG+ G+
Sbjct: 19  LILVVDDVKENIYVISELLEGEGYSTTF-VTSGPEALQRVTQAQPDLILLDLMMPGMDGL 77

Query: 70  EACHQIKKIHPQ---LPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123
           E C ++K+  PQ   +PV+ LT+ ++   + +     A  Y  K  +   L+  +++
Sbjct: 78  EVCDRLKQ-DPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKT 133



 Score = 39.7 bits (91), Expect = 8e-06
 Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 4   SPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGL 63
           S +++ ILL ED+ L    +   L ++ G  V     +G+ A++ + +  +DVV++DV +
Sbjct: 736 SSSNLTILLAEDN-LINQQVAKLLLKKLGYPV-DVVNNGQEALSALAKGDYDVVLMDVEM 793

Query: 64  PGIGGIEACHQIKKIHPQLP---VLILTSHSQPALINRLIEAQAQGYCVKGVAAETL--V 118
           P + G+ A   I++   +     ++ +T++S      R + +    Y  K +  E L   
Sbjct: 794 PEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQA 853

Query: 119 LAIRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLP 154
           L + + A  +   D +A+    +AF+   S  +  P
Sbjct: 854 LQVAATALQSTSQDRMATVSCVSAFEAKPSPSSPCP 889


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 8   IRILLVEDDELFRLGLVTRL--SQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG 65
           I +LLV+D+   R  +   L  S +  +D+A  A +   A  Y+   L  +VI D+ +P 
Sbjct: 56  ISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATE---AWDYLQHHLPALVISDIMMPQ 112

Query: 66  IGGIEACHQIKKI--HPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123
           + G +   ++++      LPV+ LT+        +  +     +  K    + L   +R+
Sbjct: 113 VDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRN 172

Query: 124 VAAGAFWWDAIASQ--EIQTAFQHSSSTGAVLPLADADGENP------LTKRELEILSLV 175
           + A         S+  ++Q  +Q   +    +         P       T RE  +L LV
Sbjct: 173 LLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLV 232

Query: 176 AKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRL 223
           ++G  N+EIA +L  +   V  +V  +  K     RT+    A++  L
Sbjct: 233 SQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,395
Number of Sequences: 78
Number of extensions: 778
Number of successful extensions: 46
Number of sequences better than 1.0e-05: 26
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 27
length of query: 226
length of database: 48,235
effective HSP length: 60
effective length of query: 166
effective length of database: 43,555
effective search space:  7230130
effective search space used:  7230130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001132 sll1672 
         (834 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001132 sll1672                                           1471   0.0  
SYNE-PCC-01-000800 sll1228                                            306   2e-85
SYNE-PCC-01-002879 slr2104                                            227   1e-61
SYNE-PCC-01-002873 slr2098                                            213   2e-57
SYNE-PCC-01-002617 slr1759                                            185   4e-49
SYNE-PCC-01-001280 sll1871                                            162   4e-42
SYNE-PCC-01-001306 sll1905                                            146   3e-37
SYNE-PCC-01-000891 sll1353                                            140   2e-35
SYNE-PCC-01-000295 sll0474                                            138   8e-35
SYNE-PCC-01-002778 slr1969                                            118   8e-29
SYNE-PCC-01-001294 sll1888                                            117   1e-28
SYNE-PCC-01-001509 slr0210                                            104   1e-24
SYNE-PCC-01-001517 slr0222                                             88   9e-20
SYNE-PCC-01-000985 sll1475                                             83   4e-18
SYNE-PCC-01-002788 slr1982                                             76   5e-16
SYNE-PCC-01-001690 slr0473                                             66   4e-13
SYNE-PCC-01-002489 slr1588                                             57   2e-10
SYNE-PCC-01-001133 sll1673                                             57   2e-10
SYNE-PCC-01-002033 slr0947                                             55   7e-10
SYNE-PCC-01-002086 slr1042                                             55   1e-09
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   52   6e-09
SYNE-PCC-01-001575 slr0312                                             50   2e-08
SYNE-PCC-01-002618 slr1760                                             49   5e-08
SYNE-PCC-01-002731 slr1909                                             49   8e-08
SYNE-PCC-01-000414 sll0649                                             49   8e-08
SYNE-PCC-01-001461 slr0115                                             47   2e-07
SYNE-PCC-01-001437 slr0081                                             47   2e-07
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    47   2e-07
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    47   2e-07
SYNE-PCC-01-002672 slr1837                                             45   7e-07
SYNE-PCC-01-002635 slr1783                                             45   9e-07

>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 1471 bits (3809), Expect = 0.0
 Identities = 761/834 (91%), Positives = 761/834 (91%)

Query: 1   MQINNHVFKGLADFRSVSWQRQIIVAIAIYGTIYISQLFITYAGTASSPIWIPTGMAVGF 60
           MQINNHVFKGLADFRSVSWQRQIIVAIAIYGTIYISQLFITYAGTASSPIWIPTGMAVGF
Sbjct: 1   MQINNHVFKGLADFRSVSWQRQIIVAIAIYGTIYISQLFITYAGTASSPIWIPTGMAVGF 60

Query: 61  LSIWGYQVWPGMVGGLLLGEIMALHGLESAANFILTVAITGVVSLVNLFSVYLSDILTAN 120
           LSIWGYQVWPGMVGGLLLGEIMALHGLESAANFILTVAITGVVSLVNLFSVYLSDILTAN
Sbjct: 61  LSIWGYQVWPGMVGGLLLGEIMALHGLESAANFILTVAITGVVSLVNLFSVYLSDILTAN 120

Query: 121 NYLFSKIKNIIRFIVFVCFGSRLPAAIICPFLLYLFEKISFGLYSEIAYTWLLSDAFALL 180
           NYLFSKIKNIIRFIVFVCFGSRLPAAIICPFLLYLFEKISFGLYSEIAYTWLLSDAFALL
Sbjct: 121 NYLFSKIKNIIRFIVFVCFGSRLPAAIICPFLLYLFEKISFGLYSEIAYTWLLSDAFALL 180

Query: 181 IVTPFIIACNHNFKVFIKLLQEQWLEAASXXXXXXXXXXXXANGYPIEYLLIPFLLWSAF 240
           IVTPFIIACNHNFKVFIKLLQEQWLEAAS            ANGYPIEYLLIPFLLWSAF
Sbjct: 181 IVTPFIIACNHNFKVFIKLLQEQWLEAASIIFFILLIVKIIANGYPIEYLLIPFLLWSAF 240

Query: 241 RFTEVGXXXXXXXXXXXXXXXXXXDQEKAAIKDQLLLLQSILACISMTTLVLNAVLSENE 300
           RFTEVG                  DQEKAAIKDQLLLLQSILACISMTTLVLNAVLSENE
Sbjct: 241 RFTEVGSSLLTIVVSALLVLILALDQEKAAIKDQLLLLQSILACISMTTLVLNAVLSENE 300

Query: 301 RSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQKQVDLVRXXXXXXX 360
           RSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQKQVDLVR       
Sbjct: 301 RSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQKQVDLVRAKEIAES 360

Query: 361 XXXXXXTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINN 420
                 TFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINN
Sbjct: 361 EAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINN 420

Query: 421 ILDFSKIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEI 480
           ILDFSKIEAGKTHLNRHNF               KAANEGIELIFIRDHDLPRYVYGDEI
Sbjct: 421 ILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEI 480

Query: 481 KLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGK 540
           KLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGK
Sbjct: 481 KLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGK 540

Query: 541 GISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFS 600
           GISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFS
Sbjct: 541 GISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFS 600

Query: 601 ILVDLGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEAS 660
           ILVDLGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEAS
Sbjct: 601 ILVDLGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEAS 660

Query: 661 NGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAI 720
           NGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGN               KAI
Sbjct: 661 NGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNATAVVALTASVLEEEKAI 720

Query: 721 VLSAGCDDFLRKPFRENTIFDSLTKHLGVTYVYESAPNKNDNHEDTALKPESFLIMSQDW 780
           VLSAGCDDFLRKPFRENTIFDSLTKHLGVTYVYESAPNKNDNHEDTALKPESFLIMSQDW
Sbjct: 721 VLSAGCDDFLRKPFRENTIFDSLTKHLGVTYVYESAPNKNDNHEDTALKPESFLIMSQDW 780

Query: 781 LTQLSHYLLEADTEQVMKLIAEIPASESELEQNLTKLVRRFEFEKILDLIEPLS 834
           LTQLSHYLLEADTEQVMKLIAEIPASESELEQNLTKLVRRFEFEKILDLIEPLS
Sbjct: 781 LTQLSHYLLEADTEQVMKLIAEIPASESELEQNLTKLVRRFEFEKILDLIEPLS 834


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  306 bits (783), Expect = 2e-85
 Identities = 184/491 (37%), Positives = 259/491 (52%), Gaps = 16/491 (3%)

Query: 346 QKQVDLVRXXXXXXXXXXXXXTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAG 405
           Q +  L +              F+A++SHELR+PLNAIIGFSQL+ R  +L   +     
Sbjct: 144 QAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHR-PTLD 202

Query: 406 IIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIF 465
           II RSGE+LL LIN+IL+ SKIEAG+T LN                   +A  + + L  
Sbjct: 203 IINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKV 262

Query: 466 IRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEP 525
            R  ++P ++  D  KLRQ+L+NLL+NAIKFT +G V L      A       P+T    
Sbjct: 263 ERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTA-------PQTDEGQ 315

Query: 526 KNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDI 585
               WL F + DTG GI+  E+  LF  F+QTE+G  + +G GLGL I+++F++LMGG I
Sbjct: 316 GASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQI 375

Query: 586 NVSSVVDQGTTFSFSILVDLGEITLSREPNSAKKVLALTP-GQPVYKILVVDDKSVNRQL 644
            V S VDQG+ F F+I V   ++  + +P      + L P  Q   K+LVVDD+  +R L
Sbjct: 376 QVRSKVDQGSAFFFAIPV---QVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPESRLL 432

Query: 645 LIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNXX 704
           L +LL   GF ++EA NG+ AIALWESW P +I MDM+MPV+DG   T+ IK   +G   
Sbjct: 433 LRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHT 492

Query: 705 XXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSLTKHLGVTYVYESAPNKNDNHE 764
                        +A +LSAGCDDFL KPFR   +   L KHL V    +  P  +    
Sbjct: 493 IIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQPPASPLRP 552

Query: 765 DTALK----PESFLIMSQDWLTQLSHYLLEADTEQVMKLIAEIPASESELEQNLTKLVRR 820
              +      E      Q W  +++   LE + + ++ L+  +P     L   L    R 
Sbjct: 553 FPVITAPSLSEQLAKTPQSWRQKMAKMALECNDDDLITLVESLPTLSPSLAHLLATWARE 612

Query: 821 FEFEKILDLIE 831
           + FE+I  ++E
Sbjct: 613 YRFEQIFLVVE 623


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  227 bits (578), Expect = 1e-61
 Identities = 149/454 (32%), Positives = 233/454 (51%), Gaps = 30/454 (6%)

Query: 303 KNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQK-QVDLVRXXXXXXXX 361
           KN L   ++  I+   +LQE     E    + E+ + E  + L+  Q  L+         
Sbjct: 395 KNNLPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTQELENSQESLLEAKLVAEGA 454

Query: 362 XXXXXTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNI 421
                 F+ANMSHE+R+P+NAIIG S+L+L+T +L  +Q      +Q +GE LL +INNI
Sbjct: 455 TKAKSEFLANMSHEIRTPMNAIIGMSELVLQT-DLTSQQRNYLQKVQYAGELLLGIINNI 513

Query: 422 LDFSKIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIK 481
           LDFSK+EAGK  L +  F               +A  +G+ L F  D  +P  + GD ++
Sbjct: 514 LDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLR 573

Query: 482 LRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKG 541
           L QIL+NL +NA+KFT +GE+ +       E ++               L F++ DTG G
Sbjct: 574 LSQILINLGNNAVKFTNQGEITIRGQLLKTENEQT-------------KLQFSVTDTGIG 620

Query: 542 ISEVELSHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFS 600
           ++  + S LF+ F+Q E+  + Q  GTGLGLAI++   +LMGGDI + SVV QG+TF F+
Sbjct: 621 LTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFT 680

Query: 601 ILVD-----------LGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLL 649
           + +            +  +++     S  + +    G     IL+V+D  +NR+    LL
Sbjct: 681 VCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGA---SILLVEDNEINREFAHDLL 737

Query: 650 APFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNXXXXXXX 709
              G  ++ A+NGQEA+ L  S     I MD++MP+++GY+AT+ I+ Q           
Sbjct: 738 TSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAM 797

Query: 710 XXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSL 743
                   +   L AG +D L KP + + +F +L
Sbjct: 798 TANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  213 bits (541), Expect = 2e-57
 Identities = 139/410 (33%), Positives = 206/410 (50%), Gaps = 30/410 (7%)

Query: 368 FVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKI 427
           F+ANMSHE+R+P+NA+IG + L L+T   P  Q E    I+ SG++LL +IN+ILDFSKI
Sbjct: 530 FLANMSHEIRTPMNAVIGMTHLALKTDLTP-RQREYLHKIRFSGQHLLGVINDILDFSKI 588

Query: 428 EAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQILL 487
           EAGK  +   +F               KA N+G+EL+F  D +LPR+  GD ++L QIL+
Sbjct: 589 EAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILI 648

Query: 488 NLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVEL 547
           N  +NA+KFT +G++ +    +    Q+V+             L   +KDTG GI    +
Sbjct: 649 NYANNAVKFTEQGDITIVVRLQEYRDQDVV-------------LYLAVKDTGIGIKPEHI 695

Query: 548 SHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSILVDLG 606
           ++LF +F Q +S       GTGLGLAI ++  +LMGG++ V S   QG+TF   + +   
Sbjct: 696 ANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKS 755

Query: 607 EITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAI 666
            +   R        L L+      ++LVVDD    R ++  LL    F +E   +G EA+
Sbjct: 756 NVIPHR--------LVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEAL 807

Query: 667 ALWESWE----PH-LIFMDMRMPVMDGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIV 721
                 +    PH ++F+D +MP MDG E  + +K     +                   
Sbjct: 808 NFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKA 867

Query: 722 LSAGCDDFLRKPFRENTIFDSLTKHLG--VTYVYESAPNKNDNHEDTALK 769
            S G DD L KP   + +FDSL + LG       E   +     ED AL+
Sbjct: 868 KSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQSSGIGAEDLALE 917



 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 631  KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690
            +IL+V+D  +N+++  +LL   GF ++ A+NG  A+    +    L+ MDM+MP MDG E
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 691  ATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSLTKHLGV- 749
            AT  I+   +                 +   L AG +D L KP     +++ L   + V 
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIPVD 1045

Query: 750  -----TYVYESAPNKND 761
                   + ESA N +D
Sbjct: 1046 SPLAPETIEESAINTSD 1062


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  185 bits (470), Expect = 4e-49
 Identities = 147/485 (30%), Positives = 238/485 (49%), Gaps = 43/485 (8%)

Query: 274  QLLLLQSILACISMTTLVLNAVLSENERSKNQLFTTNQILIEQNQKLQELYQQRELERAQ 333
            Q   ++S LA  +      N +++ ++  + +++T ++I     + L+ + +Q  +  AQ
Sbjct: 689  QRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEI-----ELLEAIAEQMGIALAQ 743

Query: 334  R---EKILIEYNESLQKQVDLVRXXXXXXXXXXXXXTFVANMSHELRSPLNAIIGFSQLM 390
                EK      E  QK ++L +              F+A MSHE+R+P+N +IG ++L+
Sbjct: 744  AALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELL 803

Query: 391  LRTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFXXXXXXXXXXX 450
            + T +L ++Q +    I++SGE LL +IN+ILDFSKIEA K  L    F           
Sbjct: 804  IMT-DLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLE 862

Query: 451  XXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLT---SN 507
                 A  + +EL +  D   P  + GD+++LRQIL NL+ NA+KFT +GEVVLT     
Sbjct: 863  MFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEP 922

Query: 508  FRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQ-EG 566
            F  AE    I       P   + + F ++DTG GI       LF++FSQ +S    +  G
Sbjct: 923  FDPAESYHTI----LNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGG 978

Query: 567  TGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSILVDLGEITLSREPNSAKKVLALTPG 626
            TGLGL I+++  ++MGG + V+S    G+ F F IL       L+ E +S +++      
Sbjct: 979  TGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAPALA-EADSVQQMKG---- 1033

Query: 627  QPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHL--IFMDMRMP 684
                ++L+VDD   NR++L      +G      ++G+ A+  W +  P L    +D++MP
Sbjct: 1034 ---KQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALD-WFARCPDLDAAILDLQMP 1089

Query: 685  VMDGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDF------LRKPFRENT 738
             MDG     +++   +G                    L AG D+       L KP R++ 
Sbjct: 1090 NMDGITLAHHLRQFAQGKDLPIILLSSG---------LVAGADELSVFQTVLNKPVRQSL 1140

Query: 739  IFDSL 743
            IFDSL
Sbjct: 1141 IFDSL 1145



 Score = 58.2 bits (139), Expect = 1e-10
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 627  QPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVM 686
            QP  +IL+ +D  VN+++  ++L   G+ +  A+NGQE I   E     L+ MDM+MPVM
Sbjct: 1187 QPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVM 1246

Query: 687  DGYEATKYIKGQVK-GNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTI 739
            DG  A ++I+  +                   +   L AG D ++ KP   N +
Sbjct: 1247 DGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  162 bits (410), Expect = 4e-42
 Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 23/304 (7%)

Query: 304 NQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQKQVDLVRXXXXXXXXXX 363
           N+L  +N  L ++NQ+L+   +Q  +  +  E+ + +  E L+  V  +           
Sbjct: 376 NELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKALELASSEAEAAN 435

Query: 364 XXXT-FVANMSHELRSPLNAIIGFSQLMLR-TKNLPMEQY-ENAGIIQRSGEYLLNLINN 420
              + F+ANMSHELR+PLNAIIG+S++++   ++L  E+   +   I RSG+ LL LIN+
Sbjct: 436 ATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIND 495

Query: 421 ILDFSKIEAGKT--HLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGD 478
           +LD SKIEAGK   +L   N                K  N  +E+    + +    VYGD
Sbjct: 496 LLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLESE---EVYGD 552

Query: 479 EIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDT 538
            IKLRQ +LNLLSNA KFT +G +              I  E   + K+  WL F +KDT
Sbjct: 553 LIKLRQGILNLLSNASKFTKDGII------------SFIVEEFKVDEKD--WLSFQVKDT 598

Query: 539 GKGISEVELSHLFEAFSQTESGRNAQEG-TGLGLAITRQFIKLMGGDINVSSVVDQGTTF 597
           G G++E ++S LF+ F+Q +S    + G TGLGLAITR+F ++MGGDI ++S +  G++F
Sbjct: 599 GIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSF 658

Query: 598 SFSI 601
           +  +
Sbjct: 659 TIKL 662


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  146 bits (368), Expect = 3e-37
 Identities = 106/274 (38%), Positives = 149/274 (54%), Gaps = 21/274 (7%)

Query: 314 IEQNQKLQELY-QQRELERAQREKILIEYNESLQKQVDLVRXXXXXXXXXXXXXTFVANM 372
           I Q ++++ +  Q  E+ER  R++ L E N+      +LV               F+A M
Sbjct: 276 ISQRKQVEMIQGQSLEMERRMRQQ-LAEQNQ------ELVAATTAAEAANRSKSEFLATM 328

Query: 373 SHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKT 432
           SHE+R+P+NAIIG + L+L T +L  +Q   A  I+ SGE LL LIN+ILDFSKIEAGK 
Sbjct: 329 SHEIRTPMNAIIGMTGLLLDT-DLTTQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKL 387

Query: 433 HLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSN 492
            L  + F                A  + + LI      +P  + GD  +LRQIL+NLLSN
Sbjct: 388 DLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSN 447

Query: 493 AIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFE 552
           A+KFT  G+V +T         EV++ + +   K +Y + F ++DTG GI+  +   LF+
Sbjct: 448 AVKFTEAGQVKVT--------VEVVDHDAA---KGEYQICFAVQDTGIGIAPNQQQALFQ 496

Query: 553 AFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDI 585
           AFSQ  S    +  GTGLGLAI  +   LMGG I
Sbjct: 497 AFSQGNSSITRRFGGTGLGLAICVRLTALMGGTI 530



 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691
           IL+ +D  +N+Q+   LL   G+ ++  +NGQEA++     +  ++ MD+ MP MDG  A
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 692 TKYI-KGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSL 743
           T++I + Q +                 +   L++G +D++ KP R   +  +L
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQAL 854



 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 31/118 (26%), Positives = 49/118 (41%)

Query: 630 YKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGY 689
           + ILVVDD   N  ++ +LL   G+     ++G EA+      +P LI +D+ MP MDG 
Sbjct: 18  FLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGL 77

Query: 690 EATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSLTKHL 747
           E    +K   +                      + G  D++ KPF    +   +  HL
Sbjct: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  140 bits (352), Expect = 2e-35
 Identities = 108/328 (32%), Positives = 172/328 (52%), Gaps = 34/328 (10%)

Query: 287 MTTLVLNAVLSE----NERSKNQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYN 342
           +T + L + +SE    NE     L T    L  Q + +++     E+  A+R   LI  N
Sbjct: 514 LTPIALRSEVSEVITLNENFNEMLIT----LQNQFKIIKQAKDNLEMRVAERTHTLIVIN 569

Query: 343 ESLQKQVD--------LVRXXXXXXXXXXXXXTFVANMSHELRSPLNAIIGFSQLMLRTK 394
           + L  +++        L                F+AN+SHE+R+P+NAI+GF  L+L+ K
Sbjct: 570 KQLAGEIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQ-K 628

Query: 395 NLPMEQ---YENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFXXXXXXXXXXXX 451
           +L + Q   Y NA  I  S + LL LI++ILD SKIEAGK  ++                
Sbjct: 629 DLSLSQTKKYLNA--IGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQI 686

Query: 452 XXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNA 511
              KA ++ + L    D  L + +Y D ++LRQIL NL+ NA+KFT EG+V +   +   
Sbjct: 687 FDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFI---YIGV 743

Query: 512 EQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQE--GTGL 569
           E  +V +  T         L   + DTG GI+  + + +F+ F+Q++ G++ ++  GTGL
Sbjct: 744 EGIQVRSQGTYIS------LAIEVTDTGIGIAPEDQAKIFDVFTQSQ-GQSTRKYGGTGL 796

Query: 570 GLAITRQFIKLMGGDINVSSVVDQGTTF 597
           GL ITR+   L+GG+I++SS + +G+TF
Sbjct: 797 GLTITRRLTALLGGEISLSSRLGEGSTF 824


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  138 bits (347), Expect = 8e-35
 Identities = 87/237 (36%), Positives = 138/237 (58%), Gaps = 11/237 (4%)

Query: 368 FVANMSHELRSPLNAIIGFSQLMLRTKNLPM--EQYENAGIIQRSGEYLLNLINNILDFS 425
           F+ANMSHELR+PLN+I+G  + +      P+  +Q ++  I++ SG +LL+LIN+ILD S
Sbjct: 421 FLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLS 480

Query: 426 KIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQI 485
           KIEAG+  L+ +                  A  + I L      +LP  V  D+ +L Q+
Sbjct: 481 KIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPD-VLVDKRRLCQV 539

Query: 486 LLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEV 545
           L+NLL+NAIKFT EG  V+        Q ++I  +     ++   L FT+ DTG GI   
Sbjct: 540 LINLLNNAIKFTPEGGKVVV-------QADLIKEQGKENSQSPPQLSFTVFDTGIGIEAD 592

Query: 546 ELSHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSI 601
            L+++FE F Q +S  N + +GTGLGL++ ++ ++L GG + V+S +++G+ F  +I
Sbjct: 593 RLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITI 649


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  118 bits (295), Expect = 8e-29
 Identities = 112/421 (26%), Positives = 187/421 (44%), Gaps = 38/421 (9%)

Query: 323 LYQQRELERAQREKILIEYNESLQKQVDLVRXXXXXXXXXXXXXTFVANMSHELRSPLNA 382
           LY + + ++   EK +IE  + L+  +                  F+ N+SHELR+PL +
Sbjct: 343 LYSEVQKQKNNFEKRVIERTKELRDTL------MAAQAANLLKSQFINNISHELRTPLTS 396

Query: 383 IIGFSQLMLRTKNLPM------EQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNR 436
           IIG S  +LR  + P       +QY    I Q +G+ LL+ IN+I+  S++E+G+T LN 
Sbjct: 397 IIGLSATLLRWFDHPASLPPAKQQYYLLNI-QENGKKLLDQINSIIQLSQLESGQTALNC 455

Query: 437 HNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVY-GDEIKLRQILLNLLSNAIK 495
            +F                A  + I L      ++ +  +  D+ +L QIL  LL+NA+K
Sbjct: 456 QSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALK 515

Query: 496 FTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFS 555
           FT     V+   ++ + Q                   F ++DTG GI+E +L  LFEAF 
Sbjct: 516 FTPAEGTVILRIWKESNQAI-----------------FQVEDTGIGINEQQLPVLFEAFK 558

Query: 556 QT-ESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSILVDLGEITLSREP 614
              +S  +  E  G+GLA+T+Q ++L GG I V S   QGT   F+ ++       + + 
Sbjct: 559 VAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTI--FTTVIPQQNFPPTTKG 616

Query: 615 NSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEP 674
               K+ A  P      ++V++       L+ +LL    +++    +   A+   E  +P
Sbjct: 617 QVQDKLDAAMPFNS--SVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQP 674

Query: 675 HLIFMDMRMPVMDGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
            LI +D     +D  E T+ IK   + +                  +   G DD+L KP 
Sbjct: 675 GLIIVD--GDFVDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPL 732

Query: 735 R 735
           +
Sbjct: 733 Q 733


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  117 bits (294), Expect = 1e-28
 Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 26/248 (10%)

Query: 368 FVANMSHELRSPLNAIIGFSQLMLRTK-NLPMEQYENAGIIQRSGEYLLNLINNILDFSK 426
           F+A+ +HELR+PLN IIGF +L+L    +   E++E      +S   LLNLIN+ILD +K
Sbjct: 197 FLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQSALLLLNLINDILDLAK 256

Query: 427 IEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQIL 486
           IEAG+  +                    +A N+G+       +  P  VYG++  L Q++
Sbjct: 257 IEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVM 316

Query: 487 LNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYW--------LDFTIKDT 538
           LN++ NAIKFT EG + +                    P+   W        L  ++ DT
Sbjct: 317 LNIVGNAIKFTHEGGITVA---------------VEVMPRTVLWEGVQKPGLLKVSVGDT 361

Query: 539 GKGISEVELSHLFEAFSQTE-SGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVD-QGTT 596
           G G+S  + S LF+ F Q + S   A  GTGLGL I+++ ++ MGG +   S+ +  G+T
Sbjct: 362 GIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGST 421

Query: 597 FSFSILVD 604
            +F++L++
Sbjct: 422 VTFTVLLE 429


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  104 bits (260), Expect = 1e-24
 Identities = 77/234 (32%), Positives = 118/234 (50%), Gaps = 24/234 (10%)

Query: 369 VANMSHELRSPLNAIIGFSQLMLRTK---NLPMEQYENAGIIQRSGEYLLNLINNILDFS 425
           ++++ HE R+PL AIIGF++ MLR +    L  +Q++       S E+LL+L+N+ LD S
Sbjct: 190 LSHIHHEFRTPLTAIIGFAR-MLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLS 248

Query: 426 KIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQI 485
           KI+A    L                    KA  + + L    D  +  + Y D+ + +QI
Sbjct: 249 KIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVD-FCYVDQRRWKQI 307

Query: 486 LLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEV 545
           L+NLLSN +KFT +G V L     +                    L F++ DTG GI   
Sbjct: 308 LINLLSNGVKFTPKGSVTLAVKATDKA------------------LIFSVIDTGIGIDPE 349

Query: 546 ELSHLFEAFSQTESGRN-AQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFS 598
           +   LF+ F Q     + A++GTGLGLA++R+  +L GGDI ++S    G+ FS
Sbjct: 350 DQRDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFS 403


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 88.2 bits (217), Expect = 9e-20
 Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 27/254 (10%)

Query: 348  QVDLVRXXXXXXXXXXXXXTFVANMSHELRSPLNAIIGFSQLML----RTKNLPMEQYEN 403
            +++ +R              FV  +SHE R+PL +IIGF +L+     R      +QY N
Sbjct: 923  EIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYIN 982

Query: 404  AGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANE-GIE 462
               IQ S + L  LI+++L  S+ +A K  +   N                   +E   E
Sbjct: 983  N--IQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFE 1040

Query: 463  LIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETS 522
            L +    D    V  D   LR IL N+LSNAIK++  G  +                 T 
Sbjct: 1041 LNYHLKPDEHSLV--DVRLLRHILENILSNAIKYSAPGSTI-----------------TL 1081

Query: 523  TEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMG 582
               K++  L F ++D G GI   +   LFEAF +  +  +   GTGLGL+I +++++  G
Sbjct: 1082 DISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIP-GTGLGLSIVKRYVEFQG 1140

Query: 583  GDINVSSVVDQGTT 596
            G I V S+  +GTT
Sbjct: 1141 GTIEVISMPGKGTT 1154


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 82.8 bits (203), Expect = 4e-18
 Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 23/237 (9%)

Query: 368 FVANMSHELRSPLNAIIGFSQLMLRTKNL---PMEQYENAGIIQRSGEYLLNLINNILDF 424
           F +  SHE R+PL+  +  +QL+  ++     P ++  N   IQ S + ++ L+++IL  
Sbjct: 72  FFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILII 131

Query: 425 SKIEAGKTHLNRHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQ 484
           ++ EAGK   N +                   +++          D    V  DE  +R 
Sbjct: 132 NRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALV--DERLVRS 189

Query: 485 ILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISE 544
           IL NLLSNAIK++  G  +  +   ++EQ                 + F + D G GIS 
Sbjct: 190 ILSNLLSNAIKYSPGGGQIKIALSLDSEQ-----------------IIFEVTDQGIGISP 232

Query: 545 VELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSI 601
            +   +FE F + ++ RN   GTGLGL + ++ + L  G I + S VDQGTT +  +
Sbjct: 233 EDQKQIFEPFHRGKNVRNIT-GTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 288


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 75.9 bits (185), Expect = 5e-16
 Identities = 37/103 (35%), Positives = 58/103 (56%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690
           K+L+V+D  +NR +L + L   G+E+  A +G++A+ +  S  P LI MDM +P++DG+ 
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 691 ATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKP 733
           ATK IKG   G                +   ++AGCDD+  KP
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 66.2 bits (160), Expect = 4e-13
 Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 41/293 (13%)

Query: 319 KLQEL-YQQRELERAQREKILIEYNESLQKQVDLVRXXXXXXXXXXXXXTFVANMSHELR 377
           +LQ L +Q  E++ A   K  I  N  L++  +L +              F    SH+L+
Sbjct: 483 RLQSLPWQSVEIQSALALKKAI-VNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQ 541

Query: 378 SPLNAIIGFSQLM-LRTKNLPMEQYENAGIIQRSGEYLLN-LINNILDFSKIEAGKTHLN 435
            PLN +  + QL+ +R      E  ++      +G  L+  LI++IL ++K++     L 
Sbjct: 542 EPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLT 601

Query: 436 RHNFXXXXXXXXXXXXXXXKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAIK 495
             +                + +   IE+       +P  V  D+I+L Q+  NL++N IK
Sbjct: 602 FTDVQEVVDKALANLKQRIEESGAEIEV-----GSMPA-VMADQIQLMQVFQNLIANGIK 655

Query: 496 FTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLD-------FTIKDTGKGISEVELS 548
           F  +                         PK K W D       F ++D G GI      
Sbjct: 656 FAGD-----------------------KSPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFE 692

Query: 549 HLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSI 601
            +F  F +  + R+  +GTG+GLAI ++ I+   G I + S   +G+TF FSI
Sbjct: 693 RIFVIFQRLHT-RDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWE--PHLIFMDMRMPVMDGY 689
           ILVV+D+++ R+L+ + L+   ++I EA NG  A+ L  S E  P LI  D+ MP MDG+
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 690 EATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSLTKHL 747
                ++   K                     +++G DD+L KPF++  + +++   L
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 32/104 (30%), Positives = 50/104 (48%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691
           IL+VDD   N QLL  LL   G+ +   ++G+ A+   +   P LI +D++MP MDGY+ 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 692 TKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFR 735
            + IK + +                 K      G  D++ KPF+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ 114


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 55.5 bits (132), Expect = 7e-10
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 634 VVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATK 693
           +VDD++  R++L   L+  G+E+  A++G+EAIA +   +P L+ +D+ MP +DGY   +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 694 YIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
            ++   K +               +   L  G DD++ KPF
Sbjct: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPF 98


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 28/104 (26%), Positives = 53/104 (50%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691
           +L+V+D S  R+++  +L   G+++  A +G EA+   +++ P L+ +D+ MP M+GYE 
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 692 TKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFR 735
            + IK   K                 +   +  G D ++ KPF+
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQ 133


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 52.4 bits (124), Expect = 6e-09
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAI-ALWESWEPHLIFMDMRMPVMDGY 689
           K+L+VDD     +LL  LL   GF++E A+NG EA+  L ES++  L+ +D+ MP ++G 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYK--LVLLDVMMPKLNGI 60

Query: 690 EATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTI 739
           E  K I+   K +               + + L  G DD L KPF +  +
Sbjct: 61  ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 631 KILVVDDKSVNRQLLIKLLA--PFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDG 688
           ++L+ DD ++ RQ L  ++   P    I +A NG++AIAL+E  +P +  MD+RMP ++G
Sbjct: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67

Query: 689 YEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPFRENTIFDSL-TKHL 747
             A   I   VK                 +   L AG   +L K    + + +++ T H 
Sbjct: 68  VAAISAICAIVKFARIIVLTTYDSDEDIYRG--LQAGAKGYLLKETEPDELLNAIRTVHR 125

Query: 748 GVTYV 752
           G  Y+
Sbjct: 126 GQKYI 130


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 49.3 bits (116), Expect = 5e-08
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGY 689
           KILVVDD    R  L   L   G  +E A+NG+EA+  +   +P ++ +D  MPVMDG+
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 630 YKILVVDDKSVNRQLLIKLLAPF-GFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDG 688
           Y +L+VDD   N  LL+K    + G+++  A NG+EA+ L  +  P +I  D+ MP MDG
Sbjct: 8   YHLLLVDDDP-NLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDG 66

Query: 689 YEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
           Y   + ++     +               +   L+ G D ++ KPF
Sbjct: 67  YAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPF 112


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 29/103 (28%), Positives = 47/103 (45%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691
           IL+V+D     QL+ + L    F     ++G+  + +++   P LI +D+ +P +DG E 
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 692 TKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
              I+ Q                   + I LS G DD+L KPF
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPF 116


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 49/104 (47%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690
           +IL++DD      L+   L   G+++++A +G +  AL    +P LI +D+ +P +DG+ 
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 691 ATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
             + ++   +                 K     +G DD+L KPF
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPF 106


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 628 PVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEP-------HLIFMD 680
           P ++ILVV+D+   R+ ++  L   G+E+    +G++A+AL + +          LI +D
Sbjct: 29  PSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILD 88

Query: 681 MRMPVMDGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
           + +P ++G +  + ++    G+               K   L  G DD++ KPF
Sbjct: 89  IMLPQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPF 140


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690
           KIL+V+D+   R+++   L+   +++ EAS+ + AI   +   P LI +D  +P   G +
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62

Query: 691 ATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
             +YIK Q                       L+AG DD++ KPF
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPF 106


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690
           KILVV+D+ V R  L  +    G+++ EA NG E   +  +   +L+ MD+ +P  +G  
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 691 ATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF--RENTI 739
             + ++ ++                  K + L  G DD+L KPF  RE TI
Sbjct: 65  LARELREEL---SLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTI 112


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691
           IL+VDD++   + L K L   G  I+ A  G+  +A+  + +  L+ +D  +P + G E 
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 692 TKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
            + I+  + G+               +   L AG DD+L KPF
Sbjct: 64  CRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 45.1 bits (105), Expect = 9e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%)

Query: 627 QPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVM 686
           +P+  +LV D+  V   +   L     F+++ A+N  EA    +   P L+  D+ MP +
Sbjct: 54  EPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQV 113

Query: 687 DGYEATKYIKGQVKGNXXXXXXXXXXXXXXXKAIVLSAGCDDFLRKPF 734
           DGY+  + ++   +                 +      GCD FL KPF
Sbjct: 114 DGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPF 161


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,952
Number of Sequences: 78
Number of extensions: 2984
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 31
Number of HSP's better than  0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 38
length of query: 834
length of database: 48,235
effective HSP length: 70
effective length of query: 764
effective length of database: 42,775
effective search space: 32680100
effective search space used: 32680100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001133 sll1673 
         (452 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001133 sll1673                                            775   0.0  
SYNE-PCC-01-002618 slr1760                                            172   1e-45
SYNE-PCC-01-000542 sll0821                                            152   3e-39
SYNE-PCC-01-001306 sll1905                                             97   1e-22
SYNE-PCC-01-001461 slr0115                                             88   6e-20
SYNE-PCC-01-002033 slr0947                                             87   1e-19
SYNE-PCC-01-002731 slr1909                                             78   6e-17
SYNE-PCC-01-002086 slr1042                                             76   2e-16
SYNE-PCC-01-000414 sll0649                                             71   8e-15
SYNE-PCC-01-001437 slr0081                                             68   7e-14
SYNE-PCC-01-002672 slr1837                                             62   3e-12
SYNE-PCC-01-002489 slr1588                                             62   4e-12
SYNE-PCC-01-002635 slr1783                                             62   5e-12
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    62   5e-12
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    61   8e-12
SYNE-PCC-01-000242 sll0396                                             59   4e-11
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   58   5e-11
SYNE-PCC-01-002788 slr1982                                             58   7e-11
SYNE-PCC-01-002879 slr2104                                             57   1e-10
SYNE-PCC-01-000800 sll1228                                             55   3e-10
SYNE-PCC-01-002486 slr1584                                             55   4e-10
SYNE-PCC-01-000523 sll0797                                             54   8e-10
SYNE-PCC-01-002221 slr1213                                             51   6e-09
SYNE-PCC-01-000877 sll1330                                             51   6e-09
SYNE-PCC-01-002617 slr1759                                             50   1e-08
SYNE-PCC-01-002873 slr2098                                             50   2e-08
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    49   2e-08
SYNE-PCC-01-001132 sll1672                                             46   3e-07
SYNE-PCC-01-000518 sll0789                                             46   3e-07
SYNE-PCC-01-000608 sll0921                                             45   6e-07

>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score =  775 bits (2001), Expect = 0.0
 Identities = 403/452 (89%), Positives = 403/452 (89%)

Query: 1   MENTDEKKGNILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDI 60
           MENTDEKKGNILLV                 GYTVRSVTSGKMALRTLQVKRPDLILLDI
Sbjct: 1   MENTDEKKGNILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDI 60

Query: 61  KMPDMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVA 120
           KMPDMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVA
Sbjct: 61  KMPDMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVA 120

Query: 121 RIEGQFTIQRQRIXXXXXXXXXXXXXXXXYQSRALLSSVLNSALDGIAAMQAVRNPQTGD 180
           RIEGQFTIQRQRI                YQSRALLSSVLNSALDGIAAMQAVRNPQTGD
Sbjct: 121 RIEGQFTIQRQRIALKREVRKRREAEEVLYQSRALLSSVLNSALDGIAAMQAVRNPQTGD 180

Query: 181 IEDFRCLVINPILSKAFNRSREDLIGRVLLKRFLQRLDPQLFDQFVNLVETGTFLTQDIY 240
           IEDFRCLVINPILSKAFNRSREDLIGRVLLKRFLQRLDPQLFDQFVNLVETGTFLTQDIY
Sbjct: 181 IEDFRCLVINPILSKAFNRSREDLIGRVLLKRFLQRLDPQLFDQFVNLVETGTFLTQDIY 240

Query: 241 FPIANSDWYHFVAVKLGDGFAVTVRDITDRKRMXXXXXXXXXXXXXXXXIDGLTHIANRR 300
           FPIANSDWYHFVAVKLGDGFAVTVRDITDRKRM                IDGLTHIANRR
Sbjct: 241 FPIANSDWYHFVAVKLGDGFAVTVRDITDRKRMELELQAANQQLQLLANIDGLTHIANRR 300

Query: 301 RFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVANTLVDIAKRI 360
           RFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVANTLVDIAKRI
Sbjct: 301 RFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVANTLVDIAKRI 360

Query: 361 TDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSKYVTISIGVSSI 420
           TDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSKYVTISIGVSSI
Sbjct: 361 TDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSKYVTISIGVSSI 420

Query: 421 IPMPEDTIERIISEADQALYSAKSQGRNRAIA 452
           IPMPEDTIERIISEADQALYSAKSQGRNRAIA
Sbjct: 421 IPMPEDTIERIISEADQALYSAKSQGRNRAIA 452


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score =  172 bits (437), Expect = 1e-45
 Identities = 85/163 (52%), Positives = 112/163 (68%)

Query: 290 IDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKV 349
           +D LT +ANRR+ + +L  EW    REQ P S++L DIDYFK YND YGHQ GDDCLQ+V
Sbjct: 151 VDQLTQLANRRQLELFLDTEWSEAIREQYPFSILLCDIDYFKNYNDHYGHQGGDDCLQQV 210

Query: 350 ANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSK 409
           A  L  +  R  DL ARYGGEEF+IVLPNT+ Q A+ + E++   I  LAIPH  S+++ 
Sbjct: 211 AKALTRVVHRPKDLAARYGGEEFLIVLPNTDLQGAIHIGEDIQAEITRLAIPHVQSAIAD 270

Query: 410 YVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452
           +VT+SIG +S IP       +++  ADQ LY AK+QGRNR ++
Sbjct: 271 HVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAKAQGRNRLVS 313



 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           G+ V   T+G+ AL      +P+++LLD  MP MDG+  C+ + K  +     ++ I+ L
Sbjct: 35  GHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFACCQALMKIYQNPSPLVLMITGL 94

Query: 92  GDTFDKVKAFECGGVDYITKPFQ---IEEVVARIEGQFTIQRQ 131
            D     +AFE G +DY+TKP     + + V R+  Q  +Q Q
Sbjct: 95  DDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQNRLQHQ 137


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score =  152 bits (383), Expect = 3e-39
 Identities = 76/163 (46%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 290  IDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKV 349
            +D LT + NR  FD  L +EWQR  R ++PL+L+L D+D+FK +ND YGH  GD CL+K+
Sbjct: 1102 LDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKI 1161

Query: 350  ANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSK 409
            A+ +  +AKR TDLVARYGGEEF I+L  T+ + A+ + E +   +A LAIPH  S    
Sbjct: 1162 ADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANLAIPHTVSGTG- 1220

Query: 410  YVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452
            +VT+SIG++   P        ++  AD ALY AK++GRN+ +A
Sbjct: 1221 HVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQWLA 1263



 Score = 63.5 bits (153), Expect = 1e-12
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 291 DGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVA 350
           D LT + N   F+  L         E K + ++++ +D FK  N+ +GH+ GD  LQ+VA
Sbjct: 434 DPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGDGLLQEVA 493

Query: 351 NTL---VDIAKRITDLVARYGGEEFVIVLPN-TNRQDALAMAENMLQAIAALAIPHEGSS 406
           + L   +      + L++R+ G+ F I+L   ++ Q+ + + E +L        P     
Sbjct: 494 DRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLSTFQE---PFFLQG 550

Query: 407 VSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRN 448
              Y+T S+G+S+  P   +T E ++  A+ AL  AK QG+N
Sbjct: 551 QPIYLTASMGIST-APYDGETAESLLKFAEIALTRAKCQGKN 591


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 97.1 bits (240), Expect = 1e-22
 Identities = 78/267 (29%), Positives = 124/267 (46%), Gaps = 50/267 (18%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY+   VTSG  AL+ +   +PDLILLD+ MP MDG +VC+ +K++ + +DIP+IF++A 
Sbjct: 41  GYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTAS 100

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTIQRQRIXXXXXXXXXXXXXXXXYQ 151
            +  D ++AF  G VDY+TKPF   E++AR++    +++ R                  Q
Sbjct: 101 NEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQTR---------DNLHHTLLEQ 151

Query: 152 SRALLSSVLNSALDGIAAMQAVRNPQTGDI---EDFRCLVINPILSKAFNRS-REDLI-- 205
           +R   +    S   GI     V+N Q G +        +V+NP  ++ FN     DL+  
Sbjct: 152 ARTAEALACTSTRLGI----LVQNMQAGVLMTDAQGTIVVVNPEFARLFNLGFPADLLLG 207

Query: 206 ----------------GRVLLKRFLQRLDPQLFDQFVNLVETGTFLTQDIYFPIANSDWY 249
                           G+ +   FL    P+   +    +E G F  +D           
Sbjct: 208 KNLTAIAPRINGLISHGQGVTHNFLAIESPEPLLKVELALEDGRFFERD----------- 256

Query: 250 HFVAVKLGD---GFAVTVRDITDRKRM 273
            +V + LGD   G     RDI+ RK++
Sbjct: 257 -YVPIMLGDSSQGHFWLYRDISQRKQV 282



 Score = 54.3 bits (129), Expect = 8e-10
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIP-IIFISA 90
           GY V  V +G+ AL  L     D++L+D++MP+MDG    E I++ +   + P II ++A
Sbjct: 763 GYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTA 822

Query: 91  LGDTFDKVKAFECGGVDYITKPFQIE 116
                D+ +    G  DY++KP ++E
Sbjct: 823 YSMEGDRERCLASGMNDYVSKPIRLE 848


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 87.8 bits (216), Expect = 6e-20
 Identities = 36/91 (39%), Positives = 60/91 (65%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V+    G          +PDLI+LD+ +P +DG+ VC+ ++++E   DIP++ ++AL
Sbjct: 25  GYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTVCQRLRRDERTADIPVLMLTAL 84

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           G   DK++ F+ G  DY+TKPF +EE++AR+
Sbjct: 85  GQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 86.7 bits (213), Expect = 1e-19
 Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V +   G+ A+ T     PDL++LD+ MP +DGY VC+ ++KE    DIPII ++AL
Sbjct: 20  GYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQELRKE---SDIPIIMLTAL 76

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           GD  D++   E G  DY+ KPF  +E+ ARI
Sbjct: 77  GDVADRITGLELGADDYVVKPFSPKELEARI 107


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 77.8 bits (190), Expect = 6e-17
 Identities = 35/92 (38%), Positives = 58/92 (63%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V +  +G+ AL  L    PD+I+ DI MP+MDGY   E +++  ++  IP++F+SA 
Sbjct: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
           G + ++VK    G   Y+ KPF+ EE+ A+++
Sbjct: 91  GQSHNRVKGLNVGADIYMAKPFEPEELAAQVQ 122


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 75.9 bits (185), Expect = 2e-16
 Identities = 41/113 (36%), Positives = 58/113 (51%)

Query: 11  ILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70
           +LLV                 G+ V     G  AL  LQ   PDL++LDI MP M+GY+V
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
           C  IK + + +++P+I  S+ G+ FD+      G   YI KPFQ  E+V  I+
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 70.9 bits (172), Expect = 8e-15
 Identities = 36/113 (31%), Positives = 58/113 (51%)

Query: 10  NILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQ 69
           NIL+V                  +T      G+  LR  Q + PDLI+LD+ +P +DG +
Sbjct: 13  NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72

Query: 70  VCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           VC  I+++   +D  I+ ++A G+  D++     G  DY+ KPF   E+VAR+
Sbjct: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARV 125


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 67.8 bits (164), Expect = 7e-14
 Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 11/107 (10%)

Query: 32  GYTVRSVTSGKMALRTLQV-------KRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIP 84
           GY V +V  G+ AL  LQ           DLI+LDI +P ++G  VC  ++   +  + P
Sbjct: 54  GYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFGGD--NTP 111

Query: 85  IIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTIQRQ 131
           I+ +SA G   +KV   E G  DYITKPF ++E+VAR      I+RQ
Sbjct: 112 ILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM--IRRQ 156


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 10  NILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQ 69
           NILLV                 G+T+     GK  L      + DL++LD  +P + G +
Sbjct: 3   NILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLE 62

Query: 70  VCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           +C  I+        P++F++A     D+V   + GG DY+ KPF++ E++AR+
Sbjct: 63  ICRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARV 113


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 33  YTVRSVTSGKMALRTLQVKR--PDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISA 90
           Y +    +G +AL  L      PDLI+ D+ MP+MDG+ +   ++K  +   IP IF++A
Sbjct: 26  YKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGHGLITALQKNAKTAAIPFIFLTA 85

Query: 91  LGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTIQ 129
           LG   D  K    G  DY+ KPF+ E+++  +  +   Q
Sbjct: 86  LGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQKQ 124


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 61.6 bits (148), Expect = 5e-12
 Identities = 26/83 (31%), Positives = 51/83 (61%)

Query: 48  LQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVD 107
           LQ   P L++ DI MP +DGYQ  + ++++   Q +P++F++A G T D+++ ++ G   
Sbjct: 96  LQHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDA 155

Query: 108 YITKPFQIEEVVARIEGQFTIQR 130
           +++KPF  +E+ A +      Q+
Sbjct: 156 FLSKPFDPDELEAIVRNLLARQQ 178


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 61.6 bits (148), Expect = 5e-12
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           G+ V   T GK  +  L     D ++LD+ +P +DG +V +  +     QD+P++ ++A 
Sbjct: 24  GFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNH--QDVPVLILTAR 81

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
               ++VK  + G  DY+ KPF + EV AR++
Sbjct: 82  DTLDERVKGLQSGADDYLCKPFALAEVAARLQ 113


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 60.8 bits (146), Expect = 8e-12
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 33  YTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALG 92
           Y V   +  K A+  ++ + P LILLD  +P   G Q  + IKK+E    IPII ++A  
Sbjct: 27  YDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQFIQYIKKQESYAAIPIIMLTAKS 85

Query: 93  DTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
              D +     G  DYITKPF  + ++ARIE
Sbjct: 86  TEEDCIACLNAGADDYITKPFSPQILLARIE 116


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V     G       Q   PDLI+++  +P M G ++C  ++  E    IPII I+A 
Sbjct: 26  GYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCRRLR--EMGSRIPIILITAK 83

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQ 125
            D  ++V   + G  DYI KPF  +E  ARI  Q
Sbjct: 84  DDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQ 117


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 58.2 bits (139), Expect = 5e-11
 Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           G+ V +  +G  AL+ L  +   L+LLD+ MP ++G +  + I+K   + ++P++ ++A 
Sbjct: 25  GFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNGIETLKEIRK---VSNVPVMMLTAR 80

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
           G+  D+V   E G  D + KPF   E++ARI+
Sbjct: 81  GEDIDRVLGLELGADDCLPKPFNDRELIARIK 112


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 57.8 bits (138), Expect = 7e-11
 Identities = 34/118 (28%), Positives = 55/118 (46%)

Query: 6   EKKGNILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDM 65
           E    +LLV                 GY V     G+ A+     + P LIL+D+ +P +
Sbjct: 2   ESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPII 61

Query: 66  DGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123
           DG+   + IK   +   IPII ++A     D+ +A   G  DY TKP +I+ ++ ++E
Sbjct: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 34/111 (30%), Positives = 56/111 (50%)

Query: 4   TDEKKGNILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMP 63
           T  +  +ILLV                 G  V+   +G+ AL  L     D IL+DI+MP
Sbjct: 713 TQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMP 772

Query: 64  DMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ 114
            ++GY     I+++E  +++PII ++A     D+ KA + G  D++TKP +
Sbjct: 773 MLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIK 823


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 55.5 bits (132), Expect = 3e-10
 Identities = 30/116 (25%), Positives = 57/116 (49%)

Query: 5   DEKKGNILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPD 64
           D+    +L+V                 G+ V+   +G+MA+   +   P +IL+D++MP 
Sbjct: 414 DQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPV 473

Query: 65  MDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVA 120
           +DG    + IK   + Q   II ++A     ++ +    G  D+++KPF+ EE++A
Sbjct: 474 LDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 55.1 bits (131), Expect = 4e-10
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 33  YTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALG 92
           YTV   T   +A         DL++LD+ +P++DG  +C+  +    L  +PI+ ++A  
Sbjct: 25  YTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITLCQKWRSHSYL--MPILMMTARD 82

Query: 93  DTFDKVKAFECGGVDYITKPFQIEEVVARI 122
              DK+   + G  DY+ KP  + E+ AR+
Sbjct: 83  TINDKITGLDAGADDYVVKPVDLGELFARV 112


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 54.3 bits (129), Expect = 8e-10
 Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 33  YTVRSVTSGKMALRTLQVKRPD--LILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISA 90
           Y V  VT G  A   L+ +  +  L ++D  +P + G ++C+ ++ +     +P++ ++A
Sbjct: 25  YVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGLELCQKLRTQGN--SLPVLMLTA 82

Query: 91  LGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           LG+  ++V+  + G  DY+TKPF + E++AR+
Sbjct: 83  LGEPENRVEGLDAGADDYLTKPFVMAELLARL 114


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 51.2 bits (121), Expect = 6e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 32  GYTVRSVTS-GKMALRTLQVKRPDLILLDIKMP-DMDGYQVCEMIKKEEELQDIPIIFIS 89
           GY +  + S G  AL+ +    PDL+LLDI++  ++DG +V E IK    L  IPI++++
Sbjct: 26  GYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGIEVAERIKS---LYSIPIVYLT 82

Query: 90  ALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122
           A  D     +A +     Y+ KPF+ E++++ +
Sbjct: 83  AFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 51.2 bits (121), Expect = 6e-09
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V+  +    A +    + P L ++D  + D DG ++C  + ++ +     +IFI + 
Sbjct: 27  GYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCRWLYQQHQ----SMIFILSA 82

Query: 92  GDTF-DKVKAFECGGVDYITKPFQIEEVVARIE 123
            DT  D V   + G  DY+TKPF ++E +ARIE
Sbjct: 83  KDTEKDIVHGLKAGADDYLTKPFGMQEFLARIE 115


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 32   GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIP-IIFISA 90
            GY V    +G+  +  L+ K  DL+L+D++MP MDG   C  I++   L+  P I+ ++A
Sbjct: 1213 GYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTA 1272

Query: 91   LGDTFDKVKAFECGGVDYITKPFQIEEV 118
                 D+ +  + G   YI+KP  I ++
Sbjct: 1273 NAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 29/108 (26%), Positives = 51/108 (47%)

Query: 11   ILLVXXXXXXXXXXXXXXXXXGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70
            ILLV                 G+ V    +G +AL  L      L+L+D++MP+MDG + 
Sbjct: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986

Query: 71   CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEV 118
               I++      +PI+ ++A     D+ +  + G  D++ KP + EE+
Sbjct: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           GY V    +G      L     +L+++DI +P  +G  +   +++E  L   P+IF++  
Sbjct: 27  GYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLLARELREELSL---PLIFLTGR 83

Query: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVAR 121
            +  DK+   E G  DY+TKPF   E+  R
Sbjct: 84  DNEVDKILGLEIGADDYLTKPFNPRELTIR 113


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91
           G+ +   ++G+ A+   +   P LI +D++MP MDGY+  + IK + +     ++ ++A 
Sbjct: 653 GFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNATAVVALTAS 712

Query: 92  GDTFDKVKAFECGGVDYITKPFQ 114
               +K      G  D++ KPF+
Sbjct: 713 VLEEEKAIVLSAGCDDFLRKPFR 735


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 55  LILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ 114
           L + D  +P + G ++C+ ++ +     +PI+ ++A     D+V+  + G  DY+ KPF 
Sbjct: 49  LAIFDWMVPGLSGLELCQKLRGQRS--SLPILMLTAKDQIADRVEGLDAGADDYLIKPFG 106

Query: 115 IEEVVARI 122
           + E++AR+
Sbjct: 107 MAELLARL 114


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 35  VRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISALGDT 94
           V    +G++ L  +Q  RPD++++DI +PDM+G  V + +KK        ++ ++     
Sbjct: 32  VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQE 91

Query: 95  FDKVKAFECGGVDYITKPFQIEEVVARIE 123
              + AF  G   Y  K  + E ++  I+
Sbjct: 92  ETVLAAFSAGADAYCMKDSRTELLIEAIQ 120


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.322    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,192
Number of Sequences: 78
Number of extensions: 1468
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 30
Number of HSP's better than  0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 39
length of query: 452
length of database: 48,235
effective HSP length: 66
effective length of query: 386
effective length of database: 43,087
effective search space: 16631582
effective search space used: 16631582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001160 sll1708 
         (226 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001160 sll1708                                            436   e-125
SYNE-PCC-01-000608 sll0921                                            172   8e-46
SYNE-PCC-01-001075 sll1592                                            150   3e-39
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...   125   1e-31
SYNE-PCC-01-001575 slr0312                                            119   6e-30
SYNE-PCC-01-001039 sll1544                                             77   5e-17
SYNE-PCC-01-002731 slr1909                                             74   4e-16
SYNE-PCC-01-002486 slr1584                                             65   1e-13
SYNE-PCC-01-002788 slr1982                                             63   9e-13
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    55   1e-10
SYNE-PCC-01-000518 sll0789                                             54   6e-10
SYNE-PCC-01-000414 sll0649                                             54   6e-10
SYNE-PCC-01-002221 slr1213                                             53   7e-10
SYNE-PCC-01-000242 sll0396                                             52   1e-09
SYNE-PCC-01-002951 ssl0564                                             52   2e-09
SYNE-PCC-01-002617 slr1759                                             52   2e-09
SYNE-PCC-01-000800 sll1228                                             52   2e-09
SYNE-PCC-01-002672 slr1837                                             51   3e-09
SYNE-PCC-01-000511 sll0782                                             51   4e-09
SYNE-PCC-01-001461 slr0115                                             50   5e-09
SYNE-PCC-01-002033 slr0947                                             49   1e-08
SYNE-PCC-01-000523 sll0797                                             49   1e-08
SYNE-PCC-01-001306 sll1905                                             48   2e-08
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    47   5e-08
SYNE-PCC-01-001437 slr0081                                             46   1e-07
SYNE-PCC-01-001132 sll1672                                             46   1e-07
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    42   2e-06
SYNE-PCC-01-002489 slr1588                                             42   2e-06
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   41   4e-06

>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score =  436 bits (1120), Expect = e-125
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MDFTSPHRVKIEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAV 60
           MDFTSPHRVKIEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAV
Sbjct: 1   MDFTSPHRVKIEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAV 60

Query: 61  LNPDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120
           LNPDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKG
Sbjct: 61  LNPDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120

Query: 121 ATLERLILAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEG 180
           ATLERLILAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEG
Sbjct: 121 ATLERLILAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEG 180

Query: 181 KSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226
           KSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV
Sbjct: 181 KSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score =  172 bits (436), Expect = 8e-46
 Identities = 93/218 (42%), Positives = 141/218 (64%), Gaps = 8/218 (3%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           ++I ++ED+ L++ GL+ AL     FE +G   NG   +       PD++++DIGLP ++
Sbjct: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63

Query: 77  GIEATKQIKQ--TSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQ 134
           GI+ T+Q+K+   + Q  +V+LT +     ++AA S+GADAYC+K +  E LI AI A  
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123

Query: 135 DGATYLDPQIARVVV------ENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQ 188
            G  ++DP IAR+V+      E  +P  P   +    L+ERE++VL+LIV+G SN +IA+
Sbjct: 124 GGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADIAE 183

Query: 189 TLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226
            LY++  T+KTHVR I+NKL  +DR QAAV A+RSGLV
Sbjct: 184 KLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLV 221


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score =  150 bits (379), Expect = 3e-39
 Identities = 84/217 (38%), Positives = 128/217 (58%), Gaps = 7/217 (3%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           ++IL+VEDD L +LGL   L      ++ G  ++G  A+        D++++D+GLPG+ 
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136
           GIEA  QIK+  PQ+ +++LTSH+ P  I   + + A  YCVKG   E L+LAI +   G
Sbjct: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVAAG 127

Query: 137 ATYLDP------QIARVVVENLKPPVPEGQAD-VSSLSEREIDVLKLIVEGKSNQEIAQT 189
           A + D       Q A     +    +P   AD  + L++RE+++L L+ +GKSNQEIA  
Sbjct: 128 AFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIADE 187

Query: 190 LYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226
           LY++  T++ HV  I+ KL V DR QAA++A+   LV
Sbjct: 188 LYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLV 224


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score =  125 bits (314), Expect = 1e-31
 Identities = 63/203 (31%), Positives = 113/203 (55%), Gaps = 5/203 (2%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           +K+L+++D PLM+ G++Q +   + FE++  V +G   +  A   +PD+I++D+ + GL 
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136
           G++  K ++       I++LT     N+I   + +GAD Y +K    + L+  I     G
Sbjct: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124

Query: 137 ATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNT 196
              L   I  +++E      P     + SL++RE+ VL+ I  G SN++IA  L++S  T
Sbjct: 125 EVILSDSIKNLLLERTHEDNP-----LDSLTDREMGVLRQIATGLSNKQIAAQLFISEET 179

Query: 197 IKTHVRGIMNKLSVDDRVQAAVI 219
           +K H+R ++ KL+V  RV A V+
Sbjct: 180 VKVHIRNLLRKLNVHSRVAATVL 202


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score =  119 bits (299), Expect = 6e-30
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 9/210 (4%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           +++LI +D  + + GL   +      ++I + +NG  A+       PD+ +MD+ +P ++
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136
           G+ A   I        I+VLT++    +I   L +GA  Y +K    + L+ AI     G
Sbjct: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126

Query: 137 ATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNT 196
             Y+ P +   +V+ L  P          LSERE++VL  + +G SN +IA  L +   T
Sbjct: 127 QKYIPPDVGAKLVQRLSNP---------ELSERELEVLGSLAQGMSNADIATALSIGEGT 177

Query: 197 IKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226
           +K+HV  I+NKL V DR QA ++A++ G+V
Sbjct: 178 VKSHVNRILNKLDVGDRTQAVIVAVKRGIV 207


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 77.0 bits (188), Expect = 5e-17
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 13/165 (7%)

Query: 63  PDLIVMDIGLPGLDGIEATKQIKQ--TSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120
           P ++V+   L    G++  KQ+K    SPQ  +++L  H    E   A   GADA  ++ 
Sbjct: 71  PLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHAAIVE--EAQQYGADAIFLES 128

Query: 121 ATLERLI-LAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVE 179
           +     I LA+     G TY+D ++  +          + Q D   L++RE+ +L+L+ E
Sbjct: 129 SLGNGEINLAVECLLQGRTYIDSRLEAIA------DYRKSQKD--ELTQREVAILRLVAE 180

Query: 180 GKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSG 224
           GK+N EI Q L+L+++T++ +V+ IM KL+  DR  AA+  LR G
Sbjct: 181 GKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGI 78
           +L+V+DDP + L ++  L  ++ +++     NG  A+       PD+IV DI +P +DG 
Sbjct: 10  LLLVDDDPNLLLLVKDYL-EYQGYQVT-TAGNGREALDLLTTTVPDMIVCDIMMPEMDGY 67

Query: 79  EATKQIKQTSP--QIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136
              +Q++Q      I ++ L++    +  +  L+ GAD Y  K    E L   + +    
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR- 126

Query: 137 ATYLDPQIARVVVENLKPPVPEGQADVS---SLSEREIDVLKLIVEGKSNQEIAQTLYLS 193
                 Q  R++  N  P     +  V+    L+  E  V++L+ +G +N+EIA  L +S
Sbjct: 127 ------QADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS 180

Query: 194 TNTIKTHVRGIMNKLSVDDRVQAAVIALRSGL 225
             T+++HV  ++NK  + +R + A  A++  +
Sbjct: 181 QRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 65.5 bits (158), Expect = 1e-13
 Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 35/214 (16%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           M+IL+VEDD  +   L +AL   ++   +    +   A   A+ L  DL+++D+ LP LD
Sbjct: 1   MRILLVEDDLPLAETLAEALS--DQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA---- 132
           GI   ++ +  S  + I+++T+    N+ I  L +GAD Y VK   L  L   + A    
Sbjct: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118

Query: 133 --------AQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQ 184
                    + G   LDP    V  +N          +V SL+ +E  +L+L++     +
Sbjct: 119 GCATCQPVLEWGPIRLDPSTYEVSYDN----------EVLSLTRKEYSILELLLR-NGRR 167

Query: 185 EIAQTLYLST----------NTIKTHVRGIMNKL 208
            +++++ + +          +T+K HVR +  KL
Sbjct: 168 VLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKL 201


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 62.8 bits (151), Expect = 9e-13
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77
           K+L+VED+ + +  L + L   + +E++  VD G  AV  A   +P LI+MD+ LP +DG
Sbjct: 6   KVLLVEDNEMNRDMLSRRL-IRKGYEVVIAVD-GEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 78  IEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA 132
             ATKQIK       I I+ LT+H + ++   A+++G D Y  K   ++RL+  + A
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76
           M+IL++EDD L+  GL+  +G  +    +    +G   +        D +V+D+ LP LD
Sbjct: 1   MRILLIEDDNLIGNGLQ--IGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLD 58

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136
           G+E  +Q +     + +++LT+    +E +  L SGAD Y  K   L      +AA    
Sbjct: 59  GLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAE----VAARLQA 114

Query: 137 ATYLDPQIARVVVENLKPPVPEGQADV------SSLSEREIDVLKLIVEGK----SNQEI 186
                      V+E     + + Q  V       SL+ RE  +L+L +  K    S   I
Sbjct: 115 LIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSI 174

Query: 187 AQTL-----YLSTNTIKTHVRGIMNKL 208
            + L      +S+  +  H+  +  KL
Sbjct: 175 EEKLSSWDEEISSGALDVHIYNLRQKL 201


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 53.5 bits (127), Expect = 6e-10
 Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNG---YGAVQQAAVLNPDLIVMDIGLP 73
           M++L+VED+P + + LE+AL   E + ++  V +G   +  + Q  V N  L + D  +P
Sbjct: 1   MRLLLVEDEPDLGMALEKAL-RRENY-VVDWVQDGNLAWSYLDQGWV-NYTLAIFDWMVP 57

Query: 74  GLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA 133
           GL G+E  ++++     + I++LT+     + +  L +GAD Y +K   +  L+  + + 
Sbjct: 58  GLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSL 117

Query: 134 QDGATYLDPQIARV 147
           Q  +  L PQ  +V
Sbjct: 118 QRRSPELQPQQLQV 131


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 53.5 bits (127), Expect = 6e-10
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 6/117 (5%)

Query: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGA-VQQAAVLNPDLIVMDIGLPGLDG 77
           ILIVEDD  +   + + L   E+F  I   D   G  + Q  V  PDLIV+D+ LP LDG
Sbjct: 14  ILIVEDDQEIAQLIRETL-EREQFTCIVTNDGETGLRIFQEQV--PDLIVLDLMLPKLDG 70

Query: 78  IEATKQIKQT--SPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA 132
           +E   +I+Q   S   +I++LT+     + I  LS+GAD Y VK  +   L+  + A
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRA 127


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 53.1 bits (126), Expect = 7e-10
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPG-LD 76
           KILIVED+ L+   + Q L + + +EI     +G  A+++ A   PDL+++DI + G +D
Sbjct: 4   KILIVEDERLVAQHIAQLLKS-DGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62

Query: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA 133
           GIE  ++IK     I IV LT+ +    +  A  +    Y +K    E+L+  +A A
Sbjct: 63  GIEVAERIKSLY-SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIA 118


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77
           ++L+VE++  +   +E  L  +E +++    D G     QA    PDLI+++  LPG+ G
Sbjct: 4   RVLVVEEEEKLARFMELEL-KYEGYDVSVARD-GLKGFTQAQEFPPDLIIVNGALPGMSG 61

Query: 78  IEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119
           +E  +++++   +I I+++T+     E +  L +GAD Y VK
Sbjct: 62  LELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVK 103


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)

Query: 151 NLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSV 210
           N +PP        +SLS+RE+++L L+  G +NQE+++ L +S  T+  HV  I+ K + 
Sbjct: 5   NYQPP--------ASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNT 56

Query: 211 DDRVQAAVIALRSGLV 226
           ++RV+    AL+ G V
Sbjct: 57  ENRVELVRWALQWGKV 72


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 4    TSPHRVKIEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNP 63
            T  +   ++P L  +IL+ ED+ + Q    Q L  +     +   +NG   +        
Sbjct: 1179 TEDNATSLQPAL--QILLAEDNLVNQKVAHQML--NNLGYPVAIANNGQEVIDALEKKFY 1234

Query: 64   DLIVMDIGLPGLDGIEATKQIKQTSP---QIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120
            DL++MD+ +P +DGI A + I+QT P   Q  IV +T++ +P +    L +G D Y  K 
Sbjct: 1235 DLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKP 1294

Query: 121  ATLERL 126
             ++ +L
Sbjct: 1295 ISINQL 1300


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77
           K+L+V+D P  +L L Q L +     ++   +NG  A+      +P +I+MD+ +P LDG
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGF--VVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476

Query: 78  IEATKQIKQTSPQIH--IVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIA 131
              T++IK +    H  I+ LT+     E    LS+G D +  K    E LI  +A
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLA 532


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 23/211 (10%)

Query: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGI 78
           IL+V+D+  +   L +ALG   +   I   D G   +  A     DL+++D  LP + G+
Sbjct: 4   ILLVDDENALTEPLSKALG--HQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 79  EATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA----AQ 134
           E  +QI+       ++ LT+    ++ +A L +G D Y +K   L  L+  + A      
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 135 DGATYLDPQIA----RVVVENLKPPVPEG----QADVSSLSEREIDVLKLIVEGK----S 182
            G T  +   A     + V N+   V       Q    +LSE+E+ +L L ++      S
Sbjct: 122 HGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181

Query: 183 NQEIAQTLY-----LSTNTIKTHVRGIMNKL 208
           ++EI   L+      S+N +   VR +  K+
Sbjct: 182 HEEIYSHLWPGESPPSSNVLAALVRLLRRKI 212


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 23/61 (37%), Positives = 41/61 (67%)

Query: 166 LSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGL 225
           LSERE +++ L+ +G  +++IA+ L++S +T+K HV G ++KL+  +R QA   A   G 
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368

Query: 226 V 226
           +
Sbjct: 369 I 369


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 12/121 (9%)

Query: 18  KILIVEDDP----LMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLP 73
           +ILI++DDP    L+ + LE A      +++   VD G      A  L PDLI++D+ LP
Sbjct: 3   RILIIDDDPAISDLVSINLEMA-----GYDVQQAVD-GIKGQALAVQLQPDLIMLDLMLP 56

Query: 74  GLDGIEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIA 131
            +DG    ++++  + +  I +++LT+     + I    SGAD Y  K   +E ++  + 
Sbjct: 57  KVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVR 116

Query: 132 A 132
           A
Sbjct: 117 A 117


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 21  IVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGIEA 80
           +V+D+  ++  LE  L     +E++   D G  A+      +PDL+V+D+ +P LDG   
Sbjct: 1   MVDDEASIRRILETRLSMIG-YEVVTAAD-GEEAIATFHESDPDLVVLDVMMPKLDGYGV 58

Query: 81  TKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA-----QD 135
            +++++ S  I I++LT+     + I  L  GAD Y VK  + + L   I +      ++
Sbjct: 59  CQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 136 GATYLDP----QIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIV----EGKSNQEIA 187
           G   +      QIA + ++  K  V +G   +  L+  E  +L+L+V    E  S  EI 
Sbjct: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERI-RLTGMEFSLLELLVSRSGEPFSRSEIL 176

Query: 188 QTL-------YLSTNTIKTHVRGIMNKLSVDDRVQAAVIALR 222
           Q +       ++ T  +  H+  +  KL  D      ++  R
Sbjct: 177 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTAR 218


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQ--QAAVLNPDLIVMDIGLPG 74
           M+IL+VED+  + + +++ L   E++ ++  V +G  A    +       L ++D  LPG
Sbjct: 1   MRILLVEDETDLGMAIKKVL-VSEKY-VVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPG 58

Query: 75  LDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQ 134
           L G+E  ++++     + +++LT+   P   +  L +GAD Y  K   +  L+  + A Q
Sbjct: 59  LSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQ 118

Query: 135 DGATYLDPQIARVVVENLKP 154
             +    PQI  +   +L P
Sbjct: 119 RRSPQFQPQILTLGNFSLDP 138


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 48  VDNGYGAVQQAAVLNPDLIVMDIGLPGLDGIEATKQIKQTSPQ---IHIVVLTSHTLPNE 104
           V +G  A+Q+     PDLI++D+ +PG+DG+E   ++KQ  PQ   I ++ LT+     +
Sbjct: 47  VTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQ-DPQTRDIPVIFLTASNEKQD 105

Query: 105 IIAALSSGADAYCVK 119
           ++ A + GA  Y  K
Sbjct: 106 LLQAFAKGAVDYVTK 120



 Score = 46.2 bits (108), Expect = 9e-08
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 48  VDNGYGAVQQAAVLNPDLIVMDIGLPGLDGIEATKQIKQT---SPQIHIVVLTSHTLPNE 104
           V+NG  A+   A  + D+++MD+ +P +DG+ AT+ I+++   S +  I+ +T++++  +
Sbjct: 769 VNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGD 828

Query: 105 IIAALSSGADAYCVKGATLERLILAIAAA 133
               L+SG + Y  K   LE L  A+  A
Sbjct: 829 RERCLASGMNDYVSKPIRLEALQQALQVA 857


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77
           KILIVED+  ++  +   L + + +++I   D  +         NP LI++D  LPG  G
Sbjct: 4   KILIVEDECAIREMIALFL-SQKYYDVIEASD--FKTAINKIKENPKLILLDWMLPGRSG 60

Query: 78  IEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA 132
           I+  + IK  ++   I I++LT+ +   + IA L++GAD Y  K  + + L+  I A
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 50/252 (19%)

Query: 6   PHRVKIEPCLPM-KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQ-------- 56
           PH ++ +   P  +IL+VED+  ++  +  +L   E +E+   VD+G  A+         
Sbjct: 19  PHSLQHQEIPPSHRILVVEDEVSIRETIVLSL-QEEGYEVYA-VDDGRDALALLQEFSED 76

Query: 57  --QAAVLNPDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGAD 114
             QAAV   DLI++DI LP ++G++  + ++       I+++++     E +  L  GAD
Sbjct: 77  PGQAAV---DLIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGAD 133

Query: 115 AYCVKGATLERLILAIAA--AQDGAT-------------YLDPQIARVVVENLKPPVPEG 159
            Y  K  +L+ L+    A   + G                L PQ  RV++          
Sbjct: 134 DYITKPFSLKELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLM---------- 183

Query: 160 QADVSSLSEREIDVLKLIVEGK----SNQEIAQTLY-----LSTNTIKTHVRGIMNKLSV 210
           + +  SL+ +E  +L+L +       S +++ + ++       + T+  H+R +  KL  
Sbjct: 184 RGEEVSLAPKEFRLLELFMSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQ 243

Query: 211 DDRVQAAVIALR 222
           D      ++ +R
Sbjct: 244 DPSQPEYLVTVR 255


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 11  IEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDI 70
           + P  P+  ++V DD  +   L   L A   FEI     NG  A+       P LI MD+
Sbjct: 623 LTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEI-EEASNGQEAIALWESWEPHLIFMDM 681

Query: 71  GLPGLDGIEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119
            +P +DG EATK IK         +V LT+  L  E    LS+G D +  K
Sbjct: 682 RMPVMDGYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRK 732


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77
           KIL+VED+ + +  L+    A E +++    +NG       A  N +L+VMDI LPG +G
Sbjct: 5   KILVVEDEIVTRNTLKGIFEA-EGYDVF-EAENGVEMHHILANHNINLVVMDINLPGKNG 62

Query: 78  IEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119
           +   +++++    + ++ LT      + I  L  GAD Y  K
Sbjct: 63  LLLARELRE-ELSLPLIFLTGRDNEVDKILGLEIGADDYLTK 103


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 10/118 (8%)

Query: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNG---YGAVQQAAVLNPDLIVMDIGLPGL 75
           IL+VED+ +++  + + L   E ++I+   +NG    G +    V+ PDLI+ D+ +P +
Sbjct: 4   ILVVEDEAIIRELIGETLSL-ENYKIL-EAENGAVALGLLNSLEVM-PDLIICDVMMPEM 60

Query: 76  DG---IEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAI 130
           DG   I A ++  +T+  I  + LT+     +    ++SGAD Y +K    E L+ A+
Sbjct: 61  DGHGLITALQKNAKTA-AIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 40.8 bits (94), Expect = 4e-06
 Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 24/209 (11%)

Query: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPD--LIVMDIGLPGL 75
           K+L+V+DD +    L   L   E F++    +NG  A+Q+   LN    L+++D+ +P L
Sbjct: 3   KLLLVDDD-IELTELLSTLLELEGFDV-ETANNGLEALQK---LNESYKLVLLDVMMPKL 57

Query: 76  DGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQD 135
           +GIE  K+I++ S  + +++LT+     + +  L  GAD    K      LI  I A   
Sbjct: 58  NGIETLKEIRKVS-NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116

Query: 136 GATYLDPQIARVVV---ENLKPPVPEGQADVS----SLSEREIDVLKLIVEGKSNQEIAQ 188
            +      I+ V +   + +      G A  +    +L++ E  +L L+++ K N    +
Sbjct: 117 RSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSRE 176

Query: 189 TLYLST---------NTIKTHVRGIMNKL 208
            L L            ++  H+  +  KL
Sbjct: 177 ELSLEVMEKPLTPFDRSLDMHISNLRRKL 205


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,993
Number of Sequences: 78
Number of extensions: 834
Number of successful extensions: 61
Number of sequences better than 1.0e-05: 29
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 31
length of query: 226
length of database: 48,235
effective HSP length: 60
effective length of query: 166
effective length of database: 43,555
effective search space:  7230130
effective search space used:  7230130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001280 sll1871 
         (674 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001280 sll1871                                           1191   0.0  
SYNE-PCC-01-002879 slr2104                                            194   9e-52
SYNE-PCC-01-000891 sll1353                                            177   9e-47
SYNE-PCC-01-002617 slr1759                                            176   3e-46
SYNE-PCC-01-001132 sll1672                                            166   3e-43
SYNE-PCC-01-002873 slr2098                                            158   6e-41
SYNE-PCC-01-001306 sll1905                                            157   1e-40
SYNE-PCC-01-000295 sll0474                                            152   3e-39
SYNE-PCC-01-000800 sll1228                                            139   4e-35
SYNE-PCC-01-001294 sll1888                                            138   5e-35
SYNE-PCC-01-001509 slr0210                                            135   5e-34
SYNE-PCC-01-001517 slr0222                                            121   8e-30
SYNE-PCC-01-002778 slr1969                                            115   4e-28
SYNE-PCC-01-000985 sll1475                                             97   2e-22
SYNE-PCC-01-001690 slr0473                                             73   2e-15

>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score = 1191 bits (3082), Expect = 0.0
 Identities = 627/674 (93%), Positives = 627/674 (93%)

Query: 1   MVSIIKSVRRSLLLKFVLSYFCLSSVVVASIFLVANYRAVKGIESQTFNRLNISNNLKEY 60
           MVSIIKSVRRSLLLKFVLSYFCLSSVVVASIFLVANYRAVKGIESQTFNRLNISNNLKEY
Sbjct: 1   MVSIIKSVRRSLLLKFVLSYFCLSSVVVASIFLVANYRAVKGIESQTFNRLNISNNLKEY 60

Query: 61  QLEQWMEGQKDTLFLLSDINSIQANTELLKNTSVSDPQYKIIQKRLIEELREIDLFLPHI 120
           QLEQWMEGQKDTLFLLSDINSIQANTELLKNTSVSDPQYKIIQKRLIEELREIDLFLPHI
Sbjct: 61  QLEQWMEGQKDTLFLLSDINSIQANTELLKNTSVSDPQYKIIQKRLIEELREIDLFLPHI 120

Query: 121 EAINILNTGGIVVASNNLDEIGVYKGIGNQTTYFANINSNFKTVPNFYFSKVYNRPSMTF 180
           EAINILNTGGIVVASNNLDEIGVYKGIGNQTTYFANINSNFKTVPNFYFSKVYNRPSMTF
Sbjct: 121 EAINILNTGGIVVASNNLDEIGVYKGIGNQTTYFANINSNFKTVPNFYFSKVYNRPSMTF 180

Query: 181 ATNIKHDITRERLGYLSIDINLNAVDDLIRKRTGLGDTGETFLVGEINNQVSFIASDENK 240
           ATNIKHDITRERLGYLSIDINLNAVDDLIRKRTGLGDTGETFLVGEINNQVSFIASDENK
Sbjct: 181 ATNIKHDITRERLGYLSIDINLNAVDDLIRKRTGLGDTGETFLVGEINNQVSFIASDENK 240

Query: 241 KLTANGSKPNFNSLGINSVMAGNSGQGSYVNYAGTPVLGVYQWIEKYNLALITEISEVEA 300
           KLTANGSKPNFNSLGINSVMAGNSGQGSYVNYAGTPVLGVYQWIEKYNLALITEISEVEA
Sbjct: 241 KLTANGSKPNFNSLGINSVMAGNSGQGSYVNYAGTPVLGVYQWIEKYNLALITEISEVEA 300

Query: 301 LELARRFTRMLVLVGLVSTALLLIAVYXXXXXXXXXXXXXXXAAIDISSGDREARAPVLG 360
           LELARRFTRMLVLVGLVSTALLLIAVY               AAIDISSGDREARAPVLG
Sbjct: 301 LELARRFTRMLVLVGLVSTALLLIAVYLLSIKITKPILLITKAAIDISSGDREARAPVLG 360

Query: 361 EDELGILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENT 420
           EDELGILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENT
Sbjct: 361 EDELGILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENT 420

Query: 421 VKXXXXXXXXXXXXNATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLD 480
           VK            NATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLD
Sbjct: 421 VKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLD 480

Query: 481 KILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXX 540
           KILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISP           
Sbjct: 481 KILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEV 540

Query: 541 XXXXXXXXXYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGI 600
                    YGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGI
Sbjct: 541 EISLESEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGI 600

Query: 601 GLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTI 660
           GLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTI
Sbjct: 601 GLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTI 660

Query: 661 KLPKYAQLNSAKND 674
           KLPKYAQLNSAKND
Sbjct: 661 KLPKYAQLNSAKND 674


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  194 bits (492), Expect = 9e-52
 Identities = 114/270 (42%), Positives = 167/270 (61%), Gaps = 5/270 (1%)

Query: 391 ELELAQKQLAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXNATKSIFLANMSHELR 450
           EL+ AQ  L   N  LE+++Q+RT+ELEN+ +               KS FLANMSHE+R
Sbjct: 411 ELQEAQISLEHLNEKLEQRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIR 470

Query: 451 TPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELY 510
           TP+NAIIG SE++++   DL S++    L K+  +G+ LL +IN++LD SK+EAGK+EL 
Sbjct: 471 TPMNAIIGMSELVLQT--DLTSQQR-NYLQKVQYAGELLLGIINNILDFSKMEAGKLELE 527

Query: 511 LETFNLKELIAGILDTIS-PXXXXXXXXXXXXXXXXXXXXYGDLIKLRQGILNLLSNASK 569
            + F+++E++  +   +                        GD ++L Q ++NL +NA K
Sbjct: 528 QKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVK 587

Query: 570 FTKDGIISFIVEEFKVD-EKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGT 628
           FT  G I+   +  K + E+  L F V DTGIGLT +Q SKLFQ F Q ++ST+R+YGGT
Sbjct: 588 FTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGT 647

Query: 629 GLGLAITRKFCQMMGGDIYLTSEIGVGSSF 658
           GLGLAI++   ++MGGDI+L S +G GS+F
Sbjct: 648 GLGLAISKSLTELMGGDIWLESVVGQGSTF 677


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  177 bits (449), Expect = 9e-47
 Identities = 119/323 (36%), Positives = 182/323 (56%), Gaps = 17/323 (5%)

Query: 363 ELGILAKSFNLMTNELRESNSSLE--KKNQELELAQKQ--LAVANSCLEEKVQQRTEELE 418
           E+  L ++FN M   L+     ++  K N E+ +A++   L V N  L  ++++R + +E
Sbjct: 525 EVITLNENFNEMLITLQNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEER-QRIE 583

Query: 419 NTVKXXXXXXXXXXXXNATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPD 478
             ++            N  KS FLAN+SHE+RTP+NAI+G+ ++L+++  DL   +    
Sbjct: 584 IKLREAKESAELA---NRVKSEFLANISHEIRTPMNAILGFCDLLLQK--DLSLSQTKKY 638

Query: 479 LDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTIS-PXXXXXXXX 537
           L+ I  S K LLALI+D+LDISKIEAGK+ ++LE  +L+ +I  I               
Sbjct: 639 LNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLL 698

Query: 538 XXXXXXXXXXXXYGDLIKLRQGILNLLSNASKFTKDG--IISFIVEEFKVDEKDW---LS 592
                       Y D ++LRQ + NL+ NA KFT++G   I   VE  +V  +     L+
Sbjct: 699 TIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLA 758

Query: 593 FQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEI 652
            +V DTGIG+  E  +K+F  FTQ+   +TRKYGGTGLGL ITR+   ++GG+I L+S +
Sbjct: 759 IEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRL 818

Query: 653 GVGSSFTIKLPKYAQL-NSAKND 674
           G GS+F +  P    + NS K+D
Sbjct: 819 GEGSTFILHFPAVRLVENSLKSD 841


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  176 bits (445), Expect = 3e-46
 Identities = 111/297 (37%), Positives = 162/297 (54%), Gaps = 23/297 (7%)

Query: 396  QKQLAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXNATKSIFLANMSHELRTPLNA 455
            Q  +A+A + L EK ++R  EL                 N  K  FLA MSHE+RTP+N 
Sbjct: 736  QMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNG 795

Query: 456  IIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFN 515
            +IG +E+LI    DL+ ++L   +  I +SG++LL +IND+LD SKIEA K+ L  + F 
Sbjct: 796  VIGMTELLI--MTDLNLQQL-DYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFE 852

Query: 516  LKELIAGILDTISPXXXXXXXXXXXXXXXXX-XXXYGDLIKLRQGILNLLSNASKFTKDG 574
            L+ LI  +L+   P                      GD ++LRQ + NL+ NA KFT+ G
Sbjct: 853  LRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKG 912

Query: 575  IISFIVEEFKVDEKDW-------------LSFQVKDTGIGLTEEQMSKLFQPFTQADSST 621
             +   V+    D  +              + F ++DTGIG+  ++  +LF+ F+Q DSST
Sbjct: 913  EVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSST 972

Query: 622  TRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSF------TIKLPKYAQLNSAK 672
            TRKYGGTGLGL I+++  QMMGG + +TSE GVGS+F      T + P  A+ +S +
Sbjct: 973  TRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAPALAEADSVQ 1029


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  166 bits (419), Expect = 3e-43
 Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 21/303 (6%)

Query: 376 NELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXN 435
           N+L  +N  L ++NQ+L+   +Q  +  +  E+ + +  E L+  V              
Sbjct: 304 NQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEYNESLQKQVDLVRAKEIAESEAK 363

Query: 436 ATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIND 495
           A KS F+ANMSHELR+PLNAIIG+S++++   ++L  E+   +   I RSG+ LL LIN+
Sbjct: 364 A-KSTFVANMSHELRSPLNAIIGFSQLML-RTKNLPMEQ-YENAGIIQRSGEYLLNLINN 420

Query: 496 LLDISKIEAGKMELYLETFNLKELIAGILDTIS-PXXXXXXXXXXXXXXXXXXXXYGDLI 554
           +LD SKIEAGK  L    F+L  L+  + D +                       YGD I
Sbjct: 421 ILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEI 480

Query: 555 KLRQGILNLLSNASKFTKDGIISFIVEEFKVDE---------------KDWLSFQVKDTG 599
           KLRQ +LNLLSNA KFT +G +  +   F+  E               K WL F +KDTG
Sbjct: 481 KLRQILLNLLSNAIKFTTEGEV-VLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTG 539

Query: 600 IGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFT 659
            G++E ++S LF+ F+Q +S    +  GTGLGLAITR+F ++MGGDI ++S +  G++F+
Sbjct: 540 KGISEVELSHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFS 598

Query: 660 IKL 662
             +
Sbjct: 599 FSI 601


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  158 bits (399), Expect = 6e-41
 Identities = 94/228 (41%), Positives = 138/228 (60%), Gaps = 7/228 (3%)

Query: 438 KSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLL 497
           K+ FLANMSHE+RTP+NA+IG + + ++        E    L KI  SG+ LL +IND+L
Sbjct: 527 KADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREY---LHKIRFSGQHLLGVINDIL 583

Query: 498 DISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXY-GDLIKL 556
           D SKIEAGK+ +    F+L +++  +   IS                     + GD ++L
Sbjct: 584 DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643

Query: 557 RQGILNLLSNASKFTKDGIISFIV--EEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614
            Q ++N  +NA KFT+ G I+ +V  +E++ D+   L   VKDTGIG+  E ++ LF  F
Sbjct: 644 GQILINYANNAVKFTEQGDITIVVRLQEYR-DQDVVLYLAVKDTGIGIKPEHIANLFNSF 702

Query: 615 TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKL 662
            QADSSTTR +GGTGLGLAI ++  ++MGG++ + SE G GS+F  K+
Sbjct: 703 QQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKV 750


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  157 bits (396), Expect = 1e-40
 Identities = 99/267 (37%), Positives = 147/267 (55%), Gaps = 14/267 (5%)

Query: 388 KNQELELAQKQLAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXNATKSIFLANMSH 447
           + +++E+ Q Q       + +++ ++ +EL                 N +KS FLA MSH
Sbjct: 278 QRKQVEMIQGQSLEMERRMRQQLAEQNQEL-------VAATTAAEAANRSKSEFLATMSH 330

Query: 448 ELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKM 507
           E+RTP+NAIIG + +L++   DL +++       I  SG++LL LIND+LD SKIEAGK+
Sbjct: 331 EIRTPMNAIIGMTGLLLDT--DLTTQQKY-FAQTIRNSGETLLTLINDILDFSKIEAGKL 387

Query: 508 ELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXX-XXYGDLIKLRQGILNLLSN 566
           +L +  F+L + +   LD + P                      GD+ +LRQ ++NLLSN
Sbjct: 388 DLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSN 447

Query: 567 ASKFTKDGIISFIVEEFKVDEKDW---LSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTR 623
           A KFT+ G +   VE    D       + F V+DTGIG+   Q   LFQ F+Q +SS TR
Sbjct: 448 AVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITR 507

Query: 624 KYGGTGLGLAITRKFCQMMGGDIYLTS 650
           ++GGTGLGLAI  +   +MGG I+  S
Sbjct: 508 RFGGTGLGLAICVRLTALMGGTIWAES 534


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  152 bits (384), Expect = 3e-39
 Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 32/280 (11%)

Query: 391 ELELAQKQLAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXNATKSIFLANMSHELR 450
           E++ A++QL ++N  L +  Q + E                         FLANMSHELR
Sbjct: 396 EIKKAEEQLKLSNKILAKATQLKDE-------------------------FLANMSHELR 430

Query: 451 TPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELY 510
           TPLN+I+G  E L  +     + + V  L+ +  SG+ LL+LIND+LD+SKIEAG+M+L 
Sbjct: 431 TPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLD 490

Query: 511 LETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXYGDLIKLRQGILNLLSNASKF 570
           L   ++  L+   L  +                        D  +L Q ++NLL+NA KF
Sbjct: 491 LNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKF 550

Query: 571 TKDG-----IISFIVEEFKVDEKD--WLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTR 623
           T +G         I E+ K + +    LSF V DTGIG+  ++++ +F+PF Q DS+  R
Sbjct: 551 TPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNR 610

Query: 624 KYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663
           +Y GTGLGL++ +K  ++ GG + +TS++  GS F I +P
Sbjct: 611 RYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  139 bits (349), Expect = 4e-35
 Identities = 93/241 (38%), Positives = 129/241 (53%), Gaps = 20/241 (8%)

Query: 435 NATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIN 494
           N  K+ FLA++SHELRTPLNAIIG+S++L     D       P LD I RSG+ LL LIN
Sbjct: 160 NRAKTEFLASISHELRTPLNAIIGFSQLL---HRDPSLAPHRPTLDIINRSGEHLLELIN 216

Query: 495 DLLDISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXYGDLI 554
           D+L++SKIEAG+  L  +  +   L    LD +                        + I
Sbjct: 217 DILEMSKIEAGRTTLNEKIIDCHRL----LDNLQALFQLRAQEKQLLLKVERSPEVPEWI 272

Query: 555 -----KLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKD-------WLSFQVKDTGIGL 602
                KLRQ ++NLL+NA KFT  G ++  V+     + D       WL F V DTG G+
Sbjct: 273 KTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGI 332

Query: 603 TEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKL 662
              +M +LF PF Q ++   +   G GLGL I++KF Q+MGG I + S++  GS+F   +
Sbjct: 333 AAHEMDELFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAI 391

Query: 663 P 663
           P
Sbjct: 392 P 392


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  138 bits (348), Expect = 5e-35
 Identities = 95/277 (34%), Positives = 150/277 (54%), Gaps = 25/277 (9%)

Query: 393 ELAQKQ-LAVANSCLEEKVQQRTEELENTVKXXXXXXXXXXXXNATKSIFLANMSHELRT 451
           ELA++   A+A++ L +++ Q T+  E   +               KS FLA+ +HELRT
Sbjct: 162 ELAEQTGTAIAHATLYQELTQATKAAEEASRL--------------KSEFLASTTHELRT 207

Query: 452 PLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYL 511
           PLN IIG+  +++++  D ++E+    +++  +S   LL LIND+LD++KIEAG++ + L
Sbjct: 208 PLNGIIGFLRLILDDMADSEAEKH-EFVEEAYQSALLLLNLINDILDLAKIEAGRVGIEL 266

Query: 512 ETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXX-XXXYGDLIKLRQGILNLLSNASKF 570
           E  +  E++    +   P                     YG+   L Q +LN++ NA KF
Sbjct: 267 EVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKF 326

Query: 571 TKDGIISFIVEEFK-------VDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTR 623
           T +G I+  VE          V +   L   V DTGIG++ EQ SKLF+ F Q D S ++
Sbjct: 327 THEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSK 386

Query: 624 KYGGTGLGLAITRKFCQMMGGDI-YLTSEIGVGSSFT 659
            YGGTGLGL I++K  + MGG + + +   G+GS+ T
Sbjct: 387 AYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVT 423


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  135 bits (339), Expect = 5e-34
 Identities = 85/229 (37%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 435 NATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIN 494
           + + +I L+++ HE RTPL AIIG++ ML +E     + +    +   L S + LL+L+N
Sbjct: 183 HTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVN 242

Query: 495 DLLDISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXYGDLI 554
           D LD+SKI+A   EL+ E   +++L   ++  +                      Y D  
Sbjct: 243 DFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQR 302

Query: 555 KLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614
           + +Q ++NLLSN  KFT  G ++  V   K  +K  L F V DTGIG+  E    LFQPF
Sbjct: 303 RWKQILINLLSNGVKFTPKGSVTLAV---KATDKA-LIFSVIDTGIGIDPEDQRDLFQPF 358

Query: 615 TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663
            Q     +    GTGLGLA++R+  Q+ GGDI LTS  GVGS F+  LP
Sbjct: 359 KQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  121 bits (303), Expect = 8e-30
 Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 5/229 (2%)

Query: 435  NATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIN 494
            N  KS F+  +SHE RTPL +IIG+ E+L +  + L +E+    ++ I  S + L  LI+
Sbjct: 937  NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLID 996

Query: 495  DLLDISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXYGDLI 554
            D+L IS+ +A K+E+ L   NL+ L   +++  S                       D+ 
Sbjct: 997  DVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLVDVR 1056

Query: 555  KLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614
             LR  + N+LSNA K++  G  S I  +   DE + L FQV+D GIG+  +   KLF+ F
Sbjct: 1057 LLRHILENILSNAIKYSAPG--STITLDISKDE-EHLLFQVRDEGIGIPLQDQEKLFEAF 1113

Query: 615  TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663
             +A  S      GTGLGL+I +++ +  GG I + S  G G++  IKLP
Sbjct: 1114 HRA--SNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLP 1160


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  115 bits (288), Expect = 4e-28
 Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 21/321 (6%)

Query: 356 APVLGEDELGILAKSFNLMTNELRESNSSLEKKNQELELAQKQLAVA--NSCLEEKVQQR 413
           AP++ E +L  L     L+ ++       L+ +   L    + LAVA   S L  +VQ++
Sbjct: 296 APIIVEGQLWGL-----LIAHQCHHPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQ 350

Query: 414 TEELENTV----KXXXXXXXXXXXXNATKSIFLANMSHELRTPLNAIIGYSEMLI---EE 466
               E  V    K            N  KS F+ N+SHELRTPL +IIG S  L+   + 
Sbjct: 351 KNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDH 410

Query: 467 AEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDT 526
              L   +    L  I  +GK LL  IN ++ +S++E+G+  L  ++F+L  L   ++ +
Sbjct: 411 PASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHS 470

Query: 527 ISPXXXXXXXXXXXXXXXXXXXXY--GDLIKLRQGILNLLSNASKFTK-DGIISFIVEEF 583
           +                          D  +L Q +  LL+NA KFT  +G +  I+  +
Sbjct: 471 LLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTV--ILRIW 528

Query: 584 KVDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMG 643
           K  E +   FQV+DTGIG+ E+Q+  LF+ F  A  S T  Y   G+GLA+T++  ++ G
Sbjct: 529 K--ESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHG 586

Query: 644 GDIYLTSEIGVGSSFTIKLPK 664
           G I + S  G G+ FT  +P+
Sbjct: 587 GYIEVESSPGQGTIFTTVIPQ 607


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 96.7 bits (239), Expect = 2e-22
 Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 7/235 (2%)

Query: 438 KSIFLANMSHELRTPLNAIIGYSEMLIE-EAEDLDSEELVPDLDKILRSGKSLLALINDL 496
           K+ F +  SHE RTPL+  +  +++L   E   LD ++   +L +I  S K+++ L++D+
Sbjct: 69  KTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDI 128

Query: 497 LDISKIEAGKMELYLETFNLKELIAGILDTISPXXXXXXXXXXXXXXXXXXXXYGDLIKL 556
           L I++ EAGK+E      +LK L    ++ I                        + + +
Sbjct: 129 LIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQDTKALVDERL-V 187

Query: 557 RQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQ 616
           R  + NLLSNA K++  G    I     +D +  + F+V D GIG++ E   ++F+PF +
Sbjct: 188 RSILSNLLSNAIKYSPGG--GQIKIALSLDSEQ-IIFEVTDQGIGISPEDQKQIFEPFHR 244

Query: 617 ADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLPKYAQLNSA 671
             +   R   GTGLGL + +K   +  G I L S +  G++ TI L +Y  L  A
Sbjct: 245 GKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICLKRYNHLPRA 297


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 73.2 bits (178), Expect = 2e-15
 Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 36/302 (11%)

Query: 369 KSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLE--EKVQQRTEELENTVKXXXX 426
           +SF+L    +R  +   +    +  LA K+ A+ N  L   E++ Q    LE +      
Sbjct: 473 QSFDLWKEIVRLQSLPWQSVEIQSALALKK-AIVNLILRQAEELAQLARNLERS------ 525

Query: 427 XXXXXXXXNATKSIFLANMSHELRTPLNAIIGYSEML---IEEAEDLDSEELVPDLDKIL 483
                   NA    F    SH+L+ PLN +  Y ++L     EA D D+++ +       
Sbjct: 526 --------NADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFID----FA 573

Query: 484 RSGKSLL-ALINDLLDISKIEAGKMELYLETF-NLKELIAGILDTISPXXXXXXXXXXXX 541
            +G SL+  LI+D+L  +K++    +L   TF +++E++   L  +              
Sbjct: 574 VTGVSLMQTLIDDILTYAKVDTQYAQL---TFTDVQEVVDKALANLKQRIEESGAEIEVG 630

Query: 542 XXXXXXXXYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIG 601
                     D I+L Q   NL++N  KF  D   S  ++ +   ++D   F V+D GIG
Sbjct: 631 SMPAVMA---DQIQLMQVFQNLIANGIKFAGDK--SPKIKIWGDRQEDAWVFAVQDNGIG 685

Query: 602 LTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIK 661
           +  +   ++F  F +    T  +Y GTG+GLAI +K  +   G I+L S  G GS+F   
Sbjct: 686 IDPQFFERIFVIFQRLH--TRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFS 743

Query: 662 LP 663
           +P
Sbjct: 744 IP 745


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,247
Number of Sequences: 78
Number of extensions: 2950
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 15
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 21
length of query: 674
length of database: 48,235
effective HSP length: 69
effective length of query: 605
effective length of database: 42,853
effective search space: 25926065
effective search space used: 25926065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001294 sll1888 
         (432 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001294 sll1888                                            797   0.0  
SYNE-PCC-01-002617 slr1759                                            170   9e-45
SYNE-PCC-01-002879 slr2104                                            149   2e-38
SYNE-PCC-01-000891 sll1353                                            143   1e-36
SYNE-PCC-01-000800 sll1228                                            140   1e-35
SYNE-PCC-01-001306 sll1905                                            139   1e-35
SYNE-PCC-01-002873 slr2098                                            138   4e-35
SYNE-PCC-01-001280 sll1871                                            130   1e-32
SYNE-PCC-01-000295 sll0474                                            129   2e-32
SYNE-PCC-01-001132 sll1672                                            114   8e-28
SYNE-PCC-01-001509 slr0210                                            108   2e-26
SYNE-PCC-01-001517 slr0222                                             83   1e-18
SYNE-PCC-01-002778 slr1969                                             78   6e-17
SYNE-PCC-01-000985 sll1475                                             72   3e-15
SYNE-PCC-01-001690 slr0473                                             66   2e-13

>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  797 bits (2058), Expect = 0.0
 Identities = 406/432 (93%), Positives = 406/432 (93%)

Query: 1   MGQPSDLTESTLRFSSLDPLHPPVISQLTAIAKRIRRNSLHLPTIWQEAVDSIGSTLGVS 60
           MGQPSDLTESTLRFSSLDPLHPPVISQLTAIAKRIRRNSLHLPTIWQEAVDSIGSTLGVS
Sbjct: 1   MGQPSDLTESTLRFSSLDPLHPPVISQLTAIAKRIRRNSLHLPTIWQEAVDSIGSTLGVS 60

Query: 61  RCLLLTKDFQSRHLQIEAEFCQPTVTAFAALIVPEESEIWRQLFEQHQPITLYNVQFQGE 120
           RCLLLTKDFQSRHLQIEAEFCQPTVTAFAALIVPEESEIWRQLFEQHQPITLYNVQFQGE
Sbjct: 61  RCLLLTKDFQSRHLQIEAEFCQPTVTAFAALIVPEESEIWRQLFEQHQPITLYNVQFQGE 120

Query: 121 DLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWHPXXXXXXXXXXXXXGTAIAHATLYQEL 180
           DLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWHP             GTAIAHATLYQEL
Sbjct: 121 DLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWHPETEALLQELAEQTGTAIAHATLYQEL 180

Query: 181 TQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQS 240
           TQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQS
Sbjct: 181 TQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQS 240

Query: 241 AXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQ 300
           A             AKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQ
Sbjct: 241 ALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQ 300

Query: 301 GPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGD 360
           GPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGD
Sbjct: 301 GPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGD 360

Query: 361 TGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGS 420
           TGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGS
Sbjct: 361 TGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGS 420

Query: 421 TVTFTVLLEELP 432
           TVTFTVLLEELP
Sbjct: 421 TVTFTVLLEELP 432


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  170 bits (430), Expect = 9e-45
 Identities = 135/463 (29%), Positives = 216/463 (46%), Gaps = 43/463 (9%)

Query: 1    MGQPSDLTESTLRFSSLDPLHPPV--ISQLTAIAKRIRRNSLHLPTIWQEAVDSIGSTLG 58
            MG      + T R  + D L   +  I  +  I++ IRR SL    I+Q A   +G+   
Sbjct: 559  MGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRR-SLQPTLIFQTAARQVGNVFA 617

Query: 59   VSRCLLLT-KDFQSRHLQIEAEFCQPTVTAFAALIVPEESEIWRQLFEQHQPITLYNVQ- 116
            VSRCL+    +  +  + + AE+     T+  A  +  E      + +  + + + ++  
Sbjct: 618  VSRCLIHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYDPTIIQGDRAMAVVDLDQ 677

Query: 117  ----------FQGEDLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWHPXXXXXXXXXXXX 166
                      +Q   +       T YQ +ANG + L Q       W              
Sbjct: 678  DLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCD-RQRVWTADEIELLEAIAEQ 736

Query: 167  XGTAIAHATLYQ--------------ELTQATKAAEEASRLKSEFLASTTHELRTPLNGI 212
             G A+A A L +              EL +AT AAE A+R K EFLA  +HE+RTP+NG+
Sbjct: 737  MGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGV 796

Query: 213  IGFLRLILDDMADSEAEKHEFVEEAYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFS 272
            IG   L++  M D   ++ ++V+   QS              +KIEA ++ +E +  +  
Sbjct: 797  IGMTELLI--MTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELR 854

Query: 273  EVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGI 332
             +++       P A+ K L        Q P  + G+Q  L Q++ N++GNA+KFT +G +
Sbjct: 855  PLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEV 914

Query: 333  TVAVEVMP-------RTVLWEGVQKPG-LLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSH 384
             + V+  P        T+L   +  P   +  ++ DTGIG+ L++Q +LFK F Q+D S 
Sbjct: 915  VLTVKGEPFDPAESYHTIL--NLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSST 972

Query: 385  SKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVTFTVL 427
            ++ YGGTGLGLVISQ+L + MGG V   +   G+GS   F +L
Sbjct: 973  TRKYGGTGLGLVISQRLTQMMGG-VLTVTSEPGVGSNFRFCIL 1014


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  149 bits (376), Expect = 2e-38
 Identities = 93/251 (37%), Positives = 145/251 (57%), Gaps = 9/251 (3%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEA 237
           + L +A   AE A++ KSEFLA+ +HE+RTP+N IIG   L+L    D  +++  ++++ 
Sbjct: 442 ESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQ--TDLTSQQRNYLQKV 499

Query: 238 YQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTA 297
             +              +K+EAG++ +E +     EV+    +    QA+ KGL+ N   
Sbjct: 500 QYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHL 559

Query: 298 PNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVS 357
             + P ++ G++  L Q+++N+  NA+KFT++G IT+      R  L +   +   L+ S
Sbjct: 560 DPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITI------RGQLLKTENEQTKLQFS 613

Query: 358 VGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEG 417
           V DTGIG++ +QQSKLF+ F Q + S S+ YGGTGLGL IS+ L E MGG +   S+  G
Sbjct: 614 VTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESV-VG 672

Query: 418 LGSTVTFTVLL 428
            GST  FTV L
Sbjct: 673 QGSTFHFTVCL 683


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  143 bits (360), Expect = 1e-36
 Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 6/241 (2%)

Query: 179 ELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILD-DMADSEAEKHEFVEEA 237
           +L +A ++AE A+R+KSEFLA+ +HE+RTP+N I+GF  L+L  D++ S+ +K  ++   
Sbjct: 585 KLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKK--YLNAI 642

Query: 238 YQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTA 297
             S+             +KIEAG++ I LE VD   +++  +     +A++K L   +  
Sbjct: 643 GSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQI 702

Query: 298 PNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVS 357
                  +Y +   L Q++ N+VGNA+KFT EG + + + V    V  +G      L + 
Sbjct: 703 DETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYIS--LAIE 760

Query: 358 VGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFS-MGE 416
           V DTGIG++ E Q+K+F  F Q  G  ++ YGGTGLGL I+++L   +GG+++  S +GE
Sbjct: 761 VTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGE 820

Query: 417 G 417
           G
Sbjct: 821 G 821


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  140 bits (352), Expect = 1e-35
 Identities = 111/376 (29%), Positives = 173/376 (46%), Gaps = 19/376 (5%)

Query: 49  AVDSIGSTLGVSRCLLLTKDFQSRHLQIEAEFCQ----PTVTAFAALIVPEESEIWRQL- 103
           A++ +G   G  R  ++  D     L +  E+C     P ++ F  + V     +W  L 
Sbjct: 4   AIEQLGLLFGCQRVHVIYHDPAKDCLHMAEEWCAVGIAPRLSTFQGVPVATYPWLWANLQ 63

Query: 104 ---------FEQHQP-ITLYNVQFQGEDLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWH 153
                     EQ  P   +  V  Q + +  + + P +   Q  GY+ +  +    G W+
Sbjct: 64  DSEGVLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYG-WN 122

Query: 154 PXXXXXXXXXXXXXGTAIAHATLYQELTQATKAAEEASRLKSEFLASTTHELRTPLNGII 213
           P               A A       LTQA +AA+ A+R K+EFLAS +HELRTPLN II
Sbjct: 123 PEELNLAKLVGQFLAIAQARHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAII 182

Query: 214 GFLRLILDDMADSEAEKHEFVEEAYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSE 273
           GF +L+  D   S A     ++   +S              +KIEAGR  +  +++D   
Sbjct: 183 GFSQLLHRD--PSLAPHRPTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHR 240

Query: 274 VLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGIT 333
           +L   +     +AQ K L   +    + P  +  +   L QV++N++ NAIKFT +GG+T
Sbjct: 241 LLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVT 300

Query: 334 VAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGL 393
           + V+ +      EG      L   V DTG G++  +  +LF  F Q + +  K+  G GL
Sbjct: 301 LKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTE-TGLKSCQGNGL 359

Query: 394 GLVISQKLVETMGGKV 409
           GL ISQK V+ MGG++
Sbjct: 360 GLPISQKFVQLMGGQI 375


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  139 bits (351), Expect = 1e-35
 Identities = 93/270 (34%), Positives = 139/270 (51%), Gaps = 21/270 (7%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEA 237
           QEL  AT AAE A+R KSEFLA+ +HE+RTP+N IIG   L+LD   D   ++  F +  
Sbjct: 305 QELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLD--TDLTTQQKYFAQTI 362

Query: 238 YQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTA 297
             S              +KIEAG++ +E+   D  + L+   +  +P A+ K L+     
Sbjct: 363 RNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRF 422

Query: 298 PNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVS 357
               P  + G+   L Q+++N++ NA+KFT  G + V VEV+      +  +    +  +
Sbjct: 423 LTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDH----DAAKGEYQICFA 478

Query: 358 VGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKV-------- 409
           V DTGIG++  QQ  LF+ F Q + S ++ +GGTGLGL I  +L   MGG +        
Sbjct: 479 VQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCV 538

Query: 410 -----AFFSMGEGL--GSTVTFTVLLEELP 432
                  + +G+    GST  FTV L  LP
Sbjct: 539 VGNPPELWQIGQPTIEGSTFYFTVNLTVLP 568


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  138 bits (347), Expect = 4e-35
 Identities = 89/252 (35%), Positives = 132/252 (52%), Gaps = 9/252 (3%)

Query: 179 ELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAY 238
           E+ +A + AEEASR+K++FLA+ +HE+RTP+N +IG   L L    D    + E++ +  
Sbjct: 512 EMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALK--TDLTPRQREYLHKIR 569

Query: 239 QSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAP 298
            S              +KIEAG++ +E    D  +VL         +A NKGL       
Sbjct: 570 FSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDID 629

Query: 299 NQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSV 358
              P    G+   L Q+++N   NA+KFT +G IT+ V       L E   +  +L ++V
Sbjct: 630 RNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVR------LQEYRDQDVVLYLAV 683

Query: 359 GDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGL 418
            DTGIG+  E  + LF  F Q D S ++ +GGTGLGL I +++ E MGG+V   S   G 
Sbjct: 684 KDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVES-EYGQ 742

Query: 419 GSTVTFTVLLEE 430
           GST    V L++
Sbjct: 743 GSTFWAKVCLQK 754


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  130 bits (326), Expect = 1e-32
 Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 10/245 (4%)

Query: 180 LTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKH-EFVEEAY 238
           L  A+  AE A+  KS FLA+ +HELRTPLN IIG+  +++++  D ++E+    +++  
Sbjct: 424 LELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKIL 483

Query: 239 QSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAP 298
           +S              +KIEAG++ + LE  +  E++    +   P  +N      +   
Sbjct: 484 RSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEIS 543

Query: 299 NQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSV 358
            +    VYG+   L Q +LN++ NA KFT +G I+  VE          V +   L   V
Sbjct: 544 LESEE-VYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFK-------VDEKDWLSFQV 595

Query: 359 GDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGL 418
            DTGIG++ EQ SKLF+ F Q D S ++ YGGTGLGL I++K  + MGG + + +   G+
Sbjct: 596 KDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDI-YLTSEIGV 654

Query: 419 GSTVT 423
           GS+ T
Sbjct: 655 GSSFT 659


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  129 bits (323), Expect = 2e-32
 Identities = 84/256 (32%), Positives = 138/256 (53%), Gaps = 5/256 (1%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDM-ADSEAEKHEFVEE 236
           ++L  + K   +A++LK EFLA+ +HELRTPLN I+G +  + + +      ++ + +E 
Sbjct: 402 EQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEI 461

Query: 237 AYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLT 296
              S              +KIEAGR+ ++L     S ++  +  F    A  K ++ +  
Sbjct: 462 VENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSE 521

Query: 297 A-PNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLK 355
             PN   +LV  ++R L QV++N++ NAIKFT EGG  V    + +    E  Q P  L 
Sbjct: 522 IIPNLPDVLV--DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLS 579

Query: 356 VSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFS-M 414
            +V DTGIG+  ++ + +F+ FVQID + ++ Y GTGLGL + +K+VE  GG V   S +
Sbjct: 580 FTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKL 639

Query: 415 GEGLGSTVTFTVLLEE 430
            EG    +T   + ++
Sbjct: 640 NEGSRFKITIPCVFQD 655


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  114 bits (284), Expect = 8e-28
 Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 26/266 (9%)

Query: 179 ELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAY 238
           +L +A + AE  ++ KS F+A+ +HELR+PLN IIGF +L+L    +   E++E      
Sbjct: 350 DLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTK-NLPMEQYENAGIIQ 408

Query: 239 QSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAP 298
           +S              +KIEAG+  +     D   +L   E+    +A N+G+       
Sbjct: 409 RSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRD 468

Query: 299 NQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVA---------------VEVMPRTV 343
           +  P  VYG++  L Q++LN++ NAIKFT EG + +                    P+  
Sbjct: 469 HDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNK 528

Query: 344 LWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVE 403
            W        L  ++ DTG G+S  + S LF+ F Q + S   A  GTGLGL I+++ ++
Sbjct: 529 YW--------LDFTIKDTGKGISEVELSHLFEAFSQTE-SGRNAQEGTGLGLAITRQFIK 579

Query: 404 TMGGKVAFFSMGEGLGSTVTFTVLLE 429
            MGG +   S+ +  G+T +F++L++
Sbjct: 580 LMGGDINVSSVVD-QGTTFSFSILVD 604


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  108 bits (271), Expect = 2e-26
 Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 14/224 (6%)

Query: 198 LASTTHELRTPLNGIIGFLRLILDDMADS-EAEKHEFVEEAYQSAXXXXXXXXXXXXXAK 256
           L+   HE RTPL  IIGF R++ D++      ++H++V+    SA             +K
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 257 IEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVM 316
           I+A    +  E V   ++  A  +    +A+ K L+ NLT  + G    Y +QR   Q++
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTI-DDGVDFCYVDQRRWKQIL 308

Query: 317 LNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKK 376
           +N++ N +KFT +G +T+AV+   + +++           SV DTGIG+  E Q  LF+ 
Sbjct: 309 INLLSNGVKFTPKGSVTLAVKATDKALIF-----------SVIDTGIGIDPEDQRDLFQP 357

Query: 377 FVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGS 420
           F QI    S A  GTGLGL +S++L +  GG +   S   G+GS
Sbjct: 358 FKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTST-PGVGS 400


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 83.2 bits (204), Expect = 1e-18
 Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 25/250 (10%)

Query: 189  EASRLKSEFLASTTHELRTPLNGIIGFLRLILD--DMADSEAEKHEFVEEAYQSAXXXXX 246
            E +  KS+F+   +HE RTPL  IIGF  L+    D   +E +K +++     S+     
Sbjct: 935  ELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTE-KKQQYINNIQNSSQRLKQ 993

Query: 247  XXXXXXXXAKIEAGRVGIELEVVDFSEVL-QATENFA--LPQAQNKGLSFNLTAPNQGPL 303
                    ++ +A ++ IEL  ++   +     ENF+  L    N  L+++L  P++  L
Sbjct: 994  LIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHL-KPDEHSL 1052

Query: 304  LVYGNQRWLLQVMLNIVGNAIKFTHEGG-ITVAVEVMPRTVLWEGVQKPGLLKVSVGDTG 362
            +   + R L  ++ NI+ NAIK++  G  IT+ +      +L++           V D G
Sbjct: 1053 V---DVRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQ-----------VRDEG 1098

Query: 363  IGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTV 422
            IG+ L+ Q KLF+ F +   S+     GTGLGL I ++ VE  GG +   SM  G G+T+
Sbjct: 1099 IGIPLQDQEKLFEAFHR--ASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISM-PGKGTTM 1155

Query: 423  TFTVLLEELP 432
               + L   P
Sbjct: 1156 VIKLPLNPAP 1165


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 77.8 bits (190), Expect = 6e-17
 Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 22/263 (8%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLIL---DDMAD-SEAEKHEF 233
           +EL     AA+ A+ LKS+F+ + +HELRTPL  IIG    +L   D  A    A++  +
Sbjct: 363 KELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYY 422

Query: 234 VEEAYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDF----SEVLQATENFALPQAQNK 289
           +    ++              +++E+G+  +  +          V+ +    A+ Q  N 
Sbjct: 423 LLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINL 482

Query: 290 GLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQ 349
            L + +   N G      +Q  L Q++  ++ NA+KFT   G          TV+    +
Sbjct: 483 ELDYQI---NVGQDQFCADQERLDQILTQLLNNALKFTPAEG----------TVILRIWK 529

Query: 350 KPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKV 409
           +       V DTGIG++ +Q   LF+ F     S++  Y   G+GL ++++LVE  GG +
Sbjct: 530 ESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYI 589

Query: 410 AFFSMGEGLGSTVTFTVLLEELP 432
              S   G G+  T  +  +  P
Sbjct: 590 EVES-SPGQGTIFTTVIPQQNFP 611


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 72.0 bits (175), Expect = 3e-15
 Identities = 64/250 (25%), Positives = 120/250 (48%), Gaps = 21/250 (8%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILD-DMADSEAEKH-EFVE 235
           +E+  A +  +E SRLK+ F +  +HE RTPL+  +   +L+ + ++A  + +K    + 
Sbjct: 53  EEVRLALEREKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLH 112

Query: 236 EAYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQA-TENFALPQAQNKGLSFN 294
               S               + EAG++      +D   + Q   E   L  +      F 
Sbjct: 113 RIQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFI 172

Query: 295 LTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGG-ITVAVEVMPRTVLWEGVQKPGL 353
            +A +   L+   ++R +  ++ N++ NAIK++  GG I +A+ +    +++E       
Sbjct: 173 CSAQDTKALV---DERLVRSILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFE------- 222

Query: 354 LKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFS 413
               V D GIG+S E Q ++F+ F +  G + +   GTGLGL++++K V+   G +   S
Sbjct: 223 ----VTDQGIGISPEDQKQIFEPFHR--GKNVRNITGTGLGLMVAKKCVDLHSGSILLKS 276

Query: 414 MGEGLGSTVT 423
             +  G+TVT
Sbjct: 277 AVD-QGTTVT 285


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 25/253 (9%)

Query: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEA---EKHEFV 234
           +EL Q  +  E ++    +F    +H+L+ PLN +  +++L+  +M  SEA   +  +F+
Sbjct: 513 EELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLL--EMRYSEALDEDAKDFI 570

Query: 235 EEAYQSAXXXXXXXXXXXXXAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFN 294
           + A                 AK++      +L   D  EV+         + +  G    
Sbjct: 571 DFAVTGVSLMQTLIDDILTYAKVDTQYA--QLTFTDVQEVVDKALANLKQRIEESGAEIE 628

Query: 295 LTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLL 354
           + +       V  +Q  L+QV  N++ N IKF        A +  P+  +W G ++    
Sbjct: 629 VGSMP----AVMADQIQLMQVFQNLIANGIKF--------AGDKSPKIKIW-GDRQEDAW 675

Query: 355 KVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSK-AYGGTGLGLVISQKLVETMGGKVAFFS 413
             +V D GIG+  +   ++F  F ++   H++  Y GTG+GL I +K++E   G++ +  
Sbjct: 676 VFAVQDNGIGIDPQFFERIFVIFQRL---HTRDEYKGTGMGLAICKKIIEGHQGQI-WLE 731

Query: 414 MGEGLGSTVTFTV 426
              G GST  F++
Sbjct: 732 SNPGEGSTFYFSI 744


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,256
Number of Sequences: 78
Number of extensions: 1446
Number of successful extensions: 55
Number of sequences better than 1.0e-05: 15
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 16
length of query: 432
length of database: 48,235
effective HSP length: 65
effective length of query: 367
effective length of database: 43,165
effective search space: 15841555
effective search space used: 15841555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001306 sll1905 
         (1014 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001306 sll1905                                           1887   0.0  
SYNE-PCC-01-002617 slr1759                                            368   e-104
SYNE-PCC-01-002873 slr2098                                            289   3e-80
SYNE-PCC-01-002879 slr2104                                            223   2e-60
SYNE-PCC-01-000891 sll1353                                            169   5e-44
SYNE-PCC-01-001280 sll1871                                            154   2e-39
SYNE-PCC-01-001132 sll1672                                            152   4e-39
SYNE-PCC-01-000295 sll0474                                            150   2e-38
SYNE-PCC-01-001294 sll1888                                            141   1e-35
SYNE-PCC-01-000800 sll1228                                            136   4e-34
SYNE-PCC-01-002778 slr1969                                            108   8e-26
SYNE-PCC-01-001509 slr0210                                            107   2e-25
SYNE-PCC-01-001517 slr0222                                            104   2e-24
SYNE-PCC-01-001133 sll1673                                             92   1e-20
SYNE-PCC-01-000985 sll1475                                             87   3e-19
SYNE-PCC-01-001690 slr0473                                             86   7e-19
SYNE-PCC-01-002788 slr1982                                             76   4e-16
SYNE-PCC-01-001461 slr0115                                             72   1e-14
SYNE-PCC-01-002086 slr1042                                             69   5e-14
SYNE-PCC-01-000414 sll0649                                             67   2e-13
SYNE-PCC-01-002618 slr1760                                             63   4e-12
SYNE-PCC-01-002731 slr1909                                             63   5e-12
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    60   3e-11
SYNE-PCC-01-002033 slr0947                                             56   5e-10
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   55   8e-10
SYNE-PCC-01-002486 slr1584                                             54   2e-09
SYNE-PCC-01-000523 sll0797                                             53   5e-09
SYNE-PCC-01-001437 slr0081                                             50   3e-08
SYNE-PCC-01-000242 sll0396                                             49   6e-08
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    49   6e-08
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    49   1e-07
SYNE-PCC-01-002672 slr1837                                             48   1e-07
SYNE-PCC-01-000518 sll0789                                             48   2e-07
SYNE-PCC-01-002489 slr1588                                             47   3e-07
SYNE-PCC-01-002635 slr1783                                             47   4e-07
SYNE-PCC-01-002221 slr1213                                             45   8e-07
SYNE-PCC-01-001575 slr0312                                             43   5e-06

>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 1887 bits (4889), Expect = 0.0
 Identities = 962/1014 (94%), Positives = 962/1014 (94%)

Query: 1    MSPSQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQA 60
            MSPSQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQA
Sbjct: 1    MSPSQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQA 60

Query: 61   QXXXXXXXXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTK 120
            Q                EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTK
Sbjct: 61   QPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTK 120

Query: 121  PFSPPELLARVKTHLELKQTRDNLHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTD 180
            PFSPPELLARVKTHLELKQTRDNLHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTD
Sbjct: 121  PFSPPELLARVKTHLELKQTRDNLHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTD 180

Query: 181  AQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGVTHNFLAIESPEPL 240
            AQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGVTHNFLAIESPEPL
Sbjct: 181  AQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGVTHNFLAIESPEPL 240

Query: 241  LKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQL 300
            LKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQL
Sbjct: 241  LKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQL 300

Query: 301  AEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXXXXXXXXXXXQQKYFAQ 360
            AEQNQELV         NRSKSEFLATMSHEIRTPMNAIIGM           QQKYFAQ
Sbjct: 301  AEQNQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLTTQQKYFAQ 360

Query: 361  TIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIR 420
            TIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIR
Sbjct: 361  TIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIR 420

Query: 421  RFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQ 480
            RFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQ
Sbjct: 421  RFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQ 480

Query: 481  DTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVG 540
            DTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVG
Sbjct: 481  DTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVG 540

Query: 541  NPPELWQIGQPTIEGSTFYFTVNLTVLPSCAYSVHNLRHSLFIGRSVLVADYDEGRGTRM 600
            NPPELWQIGQPTIEGSTFYFTVNLTVLPSCAYSVHNLRHSLFIGRSVLVADYDEGRGTRM
Sbjct: 541  NPPELWQIGQPTIEGSTFYFTVNLTVLPSCAYSVHNLRHSLFIGRSVLVADYDEGRGTRM 600

Query: 601  RNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTDFDLGKI 660
            RNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTDFDLGKI
Sbjct: 601  RNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTDFDLGKI 660

Query: 661  TTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVLGQTEPP 720
            TTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVLGQTEPP
Sbjct: 661  TTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVLGQTEPP 720

Query: 721  TLVSTEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALA 780
            TLVSTEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALA
Sbjct: 721  TLVSTEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALA 780

Query: 781  KGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDY 840
            KGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDY
Sbjct: 781  KGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDY 840

Query: 841  VSKPIRXXXXXXXXXXXXXXXXSTSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPI 900
            VSKPIR                STSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPI
Sbjct: 841  VSKPIRLEALQQALQVAATALQSTSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPI 900

Query: 901  DQDIICSLRDLDRENGQLILREIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSS 960
            DQDIICSLRDLDRENGQLILREIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSS
Sbjct: 901  DQDIICSLRDLDRENGQLILREIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSS 960

Query: 961  SANLGAVLLAQQAKTLENLTRQRDSRAMDPGHFPTLAASYERVQGELKTMLDRL 1014
            SANLGAVLLAQQAKTLENLTRQRDSRAMDPGHFPTLAASYERVQGELKTMLDRL
Sbjct: 961  SANLGAVLLAQQAKTLENLTRQRDSRAMDPGHFPTLAASYERVQGELKTMLDRL 1014


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  368 bits (945), Expect = e-104
 Identities = 262/736 (35%), Positives = 368/736 (50%), Gaps = 71/736 (9%)

Query: 272  LYRDISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHE 331
            L   I+++  + + Q   LE ER  R++LA++N EL          NR+K EFLA MSHE
Sbjct: 729  LLEAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHE 788

Query: 332  IRTPMNAIIGMXXXXXXXXXXXQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEV 391
            IRTPMN +IGM           QQ  + QTIR SGETLLT+INDILDFSKIEA KL LE 
Sbjct: 789  IRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLET 848

Query: 392  YPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKF 451
              F+L   +E  L++  P AR K L L        P  + GD  RLRQIL NL+ NA+KF
Sbjct: 849  QAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKF 908

Query: 452  TEAGQVKVTVEVVDHDAAKG----------EYQICFAVQDTGIGIAPNQQQALFQAFSQG 501
            TE G+V +TV+    D A+            ++ICF ++DTGIGI  ++Q  LF++FSQ 
Sbjct: 909  TEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQV 968

Query: 502  NSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFT 561
            +SS TR++GGTGLGL I  RLT +MGG +   S   V                GS F F 
Sbjct: 969  DSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGV----------------GSNFRFC 1012

Query: 562  VNLTVLPSCAYSVHNLRHSLFIGRSVLVADYDEGRGTRMRNLLASWRLQAEQITFSSPAK 621
            +  T          +++     G+ VL+ D +E     +++   +W L     T    A 
Sbjct: 1013 ILTTAQAPALAEADSVQQ--MKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESAL 1070

Query: 622  LGEDLKSRLTQKNYGALILHCPYPEG--RGKQFTDFDLGKITTWAPTEQDIPVLVATDIY 679
               D  +R    +   L L  P  +G         F  GK         D+P+++ +   
Sbjct: 1071 ---DWFARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGK---------DLPIILLSSGL 1118

Query: 680  LSPGERYSGDKPPVQAWIKSPINPDELENTLVDVLG---------QTEPPTLV------S 724
            ++  +  S  +  +   ++  +  D L N     +G         Q + P  V       
Sbjct: 1119 VAGADELSVFQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLP 1178

Query: 725  TEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDY 784
            TE  +  L P     L ILLAEDNL+NQ+VA  +L  LGYPV + NNGQE + AL K  Y
Sbjct: 1179 TEDNATSLQP----ALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFY 1234

Query: 785  DVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            D+VLMD++MP MDG+TA  HIR++     +P I+A+TA +M GDR+ CL +GM+ Y+SKP
Sbjct: 1235 DLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKP 1294

Query: 845  IRXXXXXXXXXXXXXXXXS--TSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPIDQ 902
            I                 S    +D +     ++  E +          P   T  P+D 
Sbjct: 1295 ISINQLRKVLQDTSALITSPQAREDIVTLGDKITVVEEQTMVK------PTDVTESPLDP 1348

Query: 903  DIICSLRDLDRENGQLIL-REIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSSS 961
              I  LRD D   G L L  E++  YCQ + +L++ +   +   D+  +   AH+L SSS
Sbjct: 1349 TAIAFLRD-DLCGGDLTLFGEMVACYCQESQKLIEELVQGLEVDDFAVIRRTAHSLKSSS 1407

Query: 962  ANLGAVLLAQQAKTLE 977
            A+LGA  L+   + LE
Sbjct: 1408 ASLGAQQLSTFCQQLE 1423


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  289 bits (739), Expect = 3e-80
 Identities = 230/718 (32%), Positives = 336/718 (46%), Gaps = 94/718 (13%)

Query: 288  QSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXXXXX 347
            ++ E E +  ++LAE+              +R K++FLA MSHEIRTPMNA+IGM     
Sbjct: 507  KAAEAEMKRAKELAEE-------------ASRIKADFLANMSHEIRTPMNAVIGMTHLAL 553

Query: 348  XXXXXXQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVV 407
                  +Q+ +   IR SG+ LL +INDILDFSKIEAGKL +E   FDL + L+    ++
Sbjct: 554  KTDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLI 613

Query: 408  VPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHD 467
               A  K L L+      +P +  GD  RL QIL+N  +NAVKFTE G + + V + ++ 
Sbjct: 614  SEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEY- 672

Query: 468  AAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMG 527
                +  +  AV+DTGIGI P     LF +F Q +SS TR FGGTGLGLAIC R+  LMG
Sbjct: 673  -RDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMG 731

Query: 528  GTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFTVNLTVLPSCAYSVHNLRHSLFI---- 583
            G +  ES            + GQ    GSTF+  V       C    + + H L +    
Sbjct: 732  GEVGVES------------EYGQ----GSTFWAKV-------CLQKSNVIPHRLVLSKDL 768

Query: 584  -GRSVLVADYDEGRGTRMRNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHC 642
             G+ VLV D ++     M++LL   +   E +  S P  L    ++      +  + +  
Sbjct: 769  EGKRVLVVDDNDHARLVMKDLLEQMKFVVETVE-SGPEALNFLAEADRENHPHSIVFIDW 827

Query: 643  PYPEGRGKQFTDFDLGKITTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPIN 702
              P   G +       ++       Q  P +     Y             +   +  PI+
Sbjct: 828  QMPNMDGLEVA----RRLKAMGLNHQ--PSIFIVTAYGREELFVKAKSLGIDDVLVKPIS 881

Query: 703  PDELENTLVDVLGQTEPPTLVSTEAISGPLFPYSSSNL---------TILLAEDNLINQQ 753
            P  L ++L  VLG    PT ++ E             L          ILL EDN INQ+
Sbjct: 882  PSVLFDSLARVLGD---PTALAQEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQE 938

Query: 754  VAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSE 813
            VA  LL+ +G+ VDV  NG  AL  L    Y +VLMD++MPEMDG+ AT  IR++   ++
Sbjct: 939  VAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQ 998

Query: 814  RPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRXXXXXXXXXXXXXXXXSTSQDRMATVS 873
             P I+A+TA  M+GDRERCL +GMND++ KPI                            
Sbjct: 999  LP-IVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWN--------------------- 1036

Query: 874  CVSAFEAKPSPSSPCPEDPAGTTLPPIDQDI-ICSLRDLDRENG-------QLILREIID 925
                    P  S   PE    + +   D +I I  +  L+ ++G       + +  +++ 
Sbjct: 1037 --KLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNSDDGLRRVLGKKSLYLKMLH 1094

Query: 926  IYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSSSANLGAVLLAQQAKTLENLTRQR 983
             +  +    L  I  A+  +D+G     AHTL   + N+GA  L Q+A  LE   +++
Sbjct: 1095 KFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIGAQELQQEAAELEKAIKEQ 1152



 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 28/108 (25%), Positives = 50/108 (46%)

Query: 20   ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
            IL+V+D + N  V +ELL   G++     +G  AL+R+                    E 
Sbjct: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986

Query: 80   CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127
               ++Q+P+   +P++ +TA+  + D  +    G  D++ KP  P EL
Sbjct: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 6   PHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXX 65
           PH  + + + E   +LVVDD      V+ +LLE   +    V SGPEAL  + +A     
Sbjct: 759 PHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENH 818

Query: 66  XXXXXXX-----XXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTK 120
                            EV  RLK         +  +TA   ++  ++A + G  D + K
Sbjct: 819 PHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVK 878

Query: 121 PFSPPEL---LARV 131
           P SP  L   LARV
Sbjct: 879 PISPSVLFDSLARV 892


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  223 bits (568), Expect = 2e-60
 Identities = 173/522 (33%), Positives = 268/522 (51%), Gaps = 68/522 (13%)

Query: 253 FERDYVPIMLGDSSQGHFWLYRDISQRKQVEM-IQGQSLEMERRMR---QQLAEQNQELV 308
           F+++ +P++   + Q       D+++ ++ ++ ++  + ++E+R++   Q+L    + L+
Sbjct: 393 FDKNNLPLLSRGTIQ-------DVTELQEAQISLEHLNEKLEQRIQERTQELENSQESLL 445

Query: 309 XXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXXXXXXXXXXXQQKYFAQTIRNSGET 368
                     ++KSEFLA MSHEIRTPMNAIIGM           QQ+ + Q ++ +GE 
Sbjct: 446 EAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEL 505

Query: 369 LLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPP 428
           LL +IN+ILDFSK+EAGKL+LE  PF + + +     ++   A  K LTL       IPP
Sbjct: 506 LLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPP 565

Query: 429 NLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAP 488
            L GD  RL QIL+NL +NAVKFT  G++ +  +++  +  + + Q  F+V DTGIG+ P
Sbjct: 566 ILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQ--FSVTDTGIGLTP 623

Query: 489 NQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQI 548
           +QQ  LFQ F+QG +S +R++GGTGLGLAI   LT LMGG IW ES   VVG        
Sbjct: 624 DQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLES---VVG-------- 672

Query: 549 GQPTIEGSTFYFTVNL-TVLPSCAYSVHNLRHSL-------------FIGRSVLVADYDE 594
                +GSTF+FTV L T  P+ A      R S+               G S+L+ + +E
Sbjct: 673 -----QGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNE 727

Query: 595 GRGTRMRNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTD 654
                  +LL S  L+ +       A  G++  + LT   Y A+++    P   G     
Sbjct: 728 INREFAHDLLTSKGLRVQ------VANNGQEALTLLTSNTYDAILMDIQMPMLNG----- 776

Query: 655 FDLGKITTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVL 714
           +D  +        +++P++  T   ++ G++       +   +  PI PD L  TL   +
Sbjct: 777 YDATRAIRQQEYHRNLPIIAMTANAMA-GDQEKALDAGMNDHLTKPIKPDLLFQTLAHWI 835

Query: 715 GQTEPPTLVSTEAISGPLFPYSSSNLTILLAEDNL--INQQV 754
               PP   S      P     SSNL   L+  ++  INQQ+
Sbjct: 836 ----PPN--SAREKKNP-----SSNLKADLSFSSMTGINQQI 866



 Score =  103 bits (257), Expect = 3e-24
 Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 21/252 (8%)

Query: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLT 800
           +ILL EDN IN++ A  LL   G  V V NNGQEAL+ L    YD +LMD++MP ++G  
Sbjct: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778

Query: 801 ATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRXXXXXXXXXXXXXX 860
           AT  IR+ +     P IIA+TA +M GD+E+ L +GMND+++KPI+              
Sbjct: 779 ATRAIRQQEYHRNLP-IIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF--------- 828

Query: 861 XXSTSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPIDQDIICSLRDLDRENGQLIL 920
                   +A     ++   K +PSS    D + +++  I+Q I         EN +L  
Sbjct: 829 ------QTLAHWIPPNSAREKKNPSSNLKADLSFSSMTGINQQIGMQY----IENVELYH 878

Query: 921 REIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSSSANLGAVLLAQQAKTLENLT 980
           R ++  +         + +   A+ D    +  AH++  ++A LG   +   A+ LE+  
Sbjct: 879 RLLVK-FGDRYSNFADQFRTEQASDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSC 937

Query: 981 RQRDSRAMDPGH 992
           R+ +S  M   H
Sbjct: 938 REHESPEMIDRH 949



 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 4   SQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXX 63
           ++P    A  + E   IL+V+D + N     +LL  +G       +G EAL  +T     
Sbjct: 704 AKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYD 763

Query: 64  XXXXXXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFS 123
                         +    ++Q    R++P+I +TA+    D  +A   G  D++TKP  
Sbjct: 764 AILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIK 823

Query: 124 PPELLARVKTH 134
            P+LL +   H
Sbjct: 824 -PDLLFQTLAH 833


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  169 bits (427), Expect = 5e-44
 Identities = 120/328 (36%), Positives = 173/328 (52%), Gaps = 32/328 (9%)

Query: 208 KNLTAIAPR--INGLISHGQGVTHNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDS 265
           + LT IA R  ++ +I+  +      + +++   ++K      + R  ER +  I++   
Sbjct: 512 QGLTPIALRSEVSEVITLNENFNEMLITLQNQFKIIKQAKDNLEMRVAERTHTLIVINKQ 571

Query: 266 SQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFL 325
             G      +I +R+++E+          ++R+  A+++ EL          NR KSEFL
Sbjct: 572 LAG------EIEERQRIEI----------KLRE--AKESAELA---------NRVKSEFL 604

Query: 326 ATMSHEIRTPMNAIIGM-XXXXXXXXXXXQQKYFAQTIRNSGETLLTLINDILDFSKIEA 384
           A +SHEIRTPMNAI+G             Q K +   I +S + LL LI+DILD SKIEA
Sbjct: 605 ANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIGSSSKILLALIDDILDISKIEA 664

Query: 385 GKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNL 444
           GKL + + P DL   + E   +    A  KSL L  +    +   +  D  RLRQIL NL
Sbjct: 665 GKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNL 724

Query: 445 LSNAVKFTEAGQVKVTVEVVDHDA-AKGEY-QICFAVQDTGIGIAPNQQQALFQAFSQGN 502
           + NA+KFTE GQV + + V      ++G Y  +   V DTGIGIAP  Q  +F  F+Q  
Sbjct: 725 VGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQ 784

Query: 503 SSITRRFGGTGLGLAICVRLTALMGGTI 530
              TR++GGTGLGL I  RLTAL+GG I
Sbjct: 785 GQSTRKYGGTGLGLTITRRLTALLGGEI 812


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  154 bits (388), Expect = 2e-39
 Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 7/259 (2%)

Query: 279 RKQVEMIQGQSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNA 338
           +KQ+ +      E  ++  ++L    + L          N +KS FLA MSHE+RTP+NA
Sbjct: 396 QKQLAVANSCLEEKVQQRTEELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNA 455

Query: 339 IIGMXXXXXXXXXXXQQKYFA---QTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFD 395
           IIG              +        I  SG++LL LIND+LD SKIEAGK++L +  F+
Sbjct: 456 IIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFN 515

Query: 396 LGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAG 455
           L + +   LD + P  +  +  L    ++     + GD+ +LRQ ++NLLSNA KFT+ G
Sbjct: 516 LKELIAGILDTISPLLKNNNNKLEVE-ISLESEEVYGDLIKLRQGILNLLSNASKFTKDG 574

Query: 456 QVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLG 515
            +   VE    D       + F V+DTGIG+   Q   LFQ F+Q +SS TR++GGTGLG
Sbjct: 575 IISFIVEEFKVDEKDW---LSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLG 631

Query: 516 LAICVRLTALMGGTIWAES 534
           LAI  +   +MGG I+  S
Sbjct: 632 LAITRKFCQMMGGDIYLTS 650


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  152 bits (385), Expect = 4e-39
 Identities = 108/274 (39%), Positives = 155/274 (56%), Gaps = 21/274 (7%)

Query: 276 ISQRKQVEMIQGQSLEMERRMRQQ-LAEQNQ------ELVXXXXXXXXXNRSKSEFLATM 328
           I Q ++++ +  Q  E+ER  R++ L E N+      +LV          ++KS F+A M
Sbjct: 314 IEQNQKLQELY-QQRELERAQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANM 372

Query: 329 SHEIRTPMNAIIGMXXXXXXXXXXXQQKYF-AQTIRNSGETLLTLINDILDFSKIEAGKL 387
           SHE+R+P+NAIIG             ++Y  A  I+ SGE LL LIN+ILDFSKIEAGK 
Sbjct: 373 SHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKT 432

Query: 388 DLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSN 447
            L  + FDL   L++  D++   A  + + LI      +P  + GD  +LRQIL+NLLSN
Sbjct: 433 HLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSN 492

Query: 448 AVKFTEAGQVKVT--------VEVVDHDAA---KGEYQICFAVQDTGIGIAPNQQQALFQ 496
           A+KFT  G+V +T         EV++ + +   K +Y + F ++DTG GI+  +   LF+
Sbjct: 493 AIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFE 552

Query: 497 AFSQGNSSITRRFGGTGLGLAICVRLTALMGGTI 530
           AFSQ  S    +  GTGLGLAI  +   LMGG I
Sbjct: 553 AFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDI 585



 Score = 69.3 bits (168), Expect = 5e-14
 Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           IL+ +D  +N+Q+   LL   G+ ++  +NGQEA++     +  ++ MD+ MP MDG  A
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
           T++I + Q +     ++A+TA  +E ++   L++G +D++ KP R
Sbjct: 692 TKYI-KGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFR 735


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  150 bits (379), Expect = 2e-38
 Identities = 89/243 (36%), Positives = 138/243 (56%), Gaps = 8/243 (3%)

Query: 299 QLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXXXXXXXXXX---XQQ 355
           ++ +  ++L           + K EFLA MSHE+RTP+N+I+GM              +Q
Sbjct: 396 EIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQ 455

Query: 356 KYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKS 415
               + + NSG  LL+LINDILD SKIEAG++DL++ P  +   +  +L  V   A QK 
Sbjct: 456 VQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQ 515

Query: 416 LTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFT-EAGQVKVTVEVVDHDAAKGEY- 473
           + L    + P  P++  D  RL Q+L+NLL+NA+KFT E G+V V  +++     +    
Sbjct: 516 INLSSEII-PNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQS 574

Query: 474 --QICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIW 531
             Q+ F V DTGIGI  ++   +F+ F Q +S++ RR+ GTGLGL++  ++  L GG++ 
Sbjct: 575 PPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVT 634

Query: 532 AES 534
             S
Sbjct: 635 VTS 637


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  141 bits (355), Expect = 1e-35
 Identities = 105/326 (32%), Positives = 154/326 (47%), Gaps = 38/326 (11%)

Query: 259 PIMLGDSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQLAEQN----------QELV 308
           P +  D + G+  L       +QV    G        + Q+LAEQ           QEL 
Sbjct: 129 PTLYQDQANGYLCL-------QQVGPAPGPWHPETEALLQELAEQTGTAIAHATLYQELT 181

Query: 309 XXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXXXXXX--XXXXXQQKYFAQTIRNSG 366
                    +R KSEFLA+ +HE+RTP+N IIG              ++  F +    S 
Sbjct: 182 QATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQSA 241

Query: 367 ETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPI 426
             LL LINDILD +KIEAG++ +E+   D  + L+   +  +P A+ K L+         
Sbjct: 242 LLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQG 301

Query: 427 PPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQ----ICFAVQDT 482
           P  + G+   L Q+++N++ NA+KFT  G + V VEV+         Q    +  +V DT
Sbjct: 302 PLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGDT 361

Query: 483 GIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNP 542
           GIG++  QQ  LF+ F Q + S ++ +GGTGLGL I  +L   MGG +            
Sbjct: 362 GIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKV------------ 409

Query: 543 PELWQIGQPTIEGSTFYFTVNLTVLP 568
              + +G+    GST  FTV L  LP
Sbjct: 410 -AFFSMGEGL--GSTVTFTVLLEELP 432


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  136 bits (342), Expect = 4e-34
 Identities = 133/460 (28%), Positives = 207/460 (45%), Gaps = 54/460 (11%)

Query: 318 NRSKSEFLATMSHEIRTPMNAIIGMXXXXXXXXXXXQQKYFAQTIRNSGETLLTLINDIL 377
           NR+K+EFLA++SHE+RTP+NAIIG              +     I  SGE LL LINDIL
Sbjct: 160 NRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDIL 219

Query: 378 DFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRL 437
           + SKIEAG+  L     D  + L+    +    A++K L L       +P  ++ D  +L
Sbjct: 220 EMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKL 279

Query: 438 RQILVNLLSNAVKFTEAGQVKVTVEVV---DHDAAKG-EYQICFAVQDTGIGIAPNQQQA 493
           RQ+L+NLL+NA+KFT  G V + V+ +     D  +G    + F V DTG GIA ++   
Sbjct: 280 RQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDE 339

Query: 494 LFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTI 553
           LF  F+Q  + + +   G GLGL I  +   LMGG I                Q+     
Sbjct: 340 LFVPFAQTETGL-KSCQGNGLGLPISQKFVQLMGGQI----------------QVRSKVD 382

Query: 554 EGSTFYFTVNLTVL----PSCAYSVHNLRHSLFIGRSVLVADYDEGRGTRMRNLLASWRL 609
           +GS F+F + + V+    P+   S   L       + VLV D        +R LL S   
Sbjct: 383 QGSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTSLGF 442

Query: 610 QAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTDFDLGKITTWAPTEQD 669
             ++      A+ GE   +     +   +++    P   G+  T     KI   A  +  
Sbjct: 443 VVQE------AENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQ----KIK--ASPQGQ 490

Query: 670 IPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDEL-----ENTLVDVLGQTEPPTLVS 724
             +++A       GER          ++  P  P+EL     ++  V +  Q +PP    
Sbjct: 491 HTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQPP---- 546

Query: 725 TEAISGPLFPY---SSSNLTILLAE-DNLINQQVAKLLLK 760
               + PL P+   ++ +L+  LA+      Q++AK+ L+
Sbjct: 547 ----ASPLRPFPVITAPSLSEQLAKTPQSWRQKMAKMALE 582



 Score = 74.7 bits (182), Expect = 1e-15
 Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 3/153 (1%)

Query: 694 QAWIKSPINPDELENTLVDVLGQTEPPTLVSTEAISGPLFPYSSSNLTILLAEDNLINQQ 753
           Q  ++S ++        + V     P     T A++ P  P    N  +L+ +D   ++ 
Sbjct: 374 QIQVRSKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLP--PLDQYNQKVLVVDDRPESRL 431

Query: 754 VAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSE 813
           + + LL  LG+ V    NG+ A++        V+LMD++MP +DG + T+ I+ S  + +
Sbjct: 432 LLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASP-QGQ 490

Query: 814 RPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
              IIA+TA + EG+R   L++G +D++SKP R
Sbjct: 491 HTIIIALTASAFEGERAEILSAGCDDFLSKPFR 523



 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 8   PPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXX 67
           PP+  +  +   +LVVDD  E+  ++ +LL   G+      +G  A+             
Sbjct: 411 PPLDQYNQK---VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILM 467

Query: 68  XXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127
                         ++K  PQ +   +I LTAS  + +  +  + G  D+++KPF P EL
Sbjct: 468 DMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEEL 527

Query: 128 LARVKTHL 135
           +A +  HL
Sbjct: 528 IALLAKHL 535


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  108 bits (270), Expect = 8e-26
 Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 19/259 (7%)

Query: 285 IQGQSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNAIIGMXX 344
           +Q Q    E+R+     E+ +EL          N  KS+F+  +SHE+RTP+ +IIG+  
Sbjct: 347 VQKQKNNFEKRV----IERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSA 402

Query: 345 XXX------XXXXXXQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQ 398
                          +Q+Y+   I+ +G+ LL  IN I+  S++E+G+  L    F L  
Sbjct: 403 TLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHT 462

Query: 399 CLEEALDVVVPSARQKSLTLIRRFLTPIPPN-LQGDVTRLRQILVNLLSNAVKFTEA-GQ 456
             +  +  ++  A ++ + L   +   +  +    D  RL QIL  LL+NA+KFT A G 
Sbjct: 463 LAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGT 522

Query: 457 VKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGL 516
           V + +        K   Q  F V+DTGIGI   Q   LF+AF     S T  +   G+GL
Sbjct: 523 VILRIW-------KESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGL 575

Query: 517 AICVRLTALMGGTIWAESN 535
           A+  +L  L GG I  ES+
Sbjct: 576 ALTKQLVELHGGYIEVESS 594


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  107 bits (267), Expect = 2e-25
 Identities = 79/209 (37%), Positives = 104/209 (49%), Gaps = 11/209 (5%)

Query: 325 LATMSHEIRTPMNAIIG---MXXXXXXXXXXXQQKYFAQTIRNSGETLLTLINDILDFSK 381
           L+ + HE RTP+ AIIG   M           +Q  + Q   NS E LL+L+ND LD SK
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 382 IEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQIL 441
           I+A   +L      +       + +V   A++K L L       +      D  R +QIL
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVD-FCYVDQRRWKQIL 308

Query: 442 VNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQG 501
           +NLLSN VKFT  G V + V+  D         + F+V DTGIGI P  Q+ LFQ F Q 
Sbjct: 309 INLLSNGVKFTPKGSVTLAVKATDK-------ALIFSVIDTGIGIDPEDQRDLFQPFKQI 361

Query: 502 NSSITRRFGGTGLGLAICVRLTALMGGTI 530
           +   +    GTGLGLA+  RL  L GG I
Sbjct: 362 SHPPSFAEKGTGLGLALSRRLAQLHGGDI 390


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  104 bits (259), Expect = 2e-24
 Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 12/216 (5%)

Query: 318  NRSKSEFLATMSHEIRTPMNAIIG---MXXXXXXXXXXXQQKYFAQTIRNSGETLLTLIN 374
            N +KS+F+  +SHE RTP+ +IIG   +           +++ +   I+NS + L  LI+
Sbjct: 937  NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLID 996

Query: 375  DILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDV 434
            D+L  S+ +A K+++E+   +L     + ++        +    +   L P   +L  DV
Sbjct: 997  DVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLV-DV 1055

Query: 435  TRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQAL 494
              LR IL N+LSNA+K++  G        +  D +K E  + F V+D GIGI    Q+ L
Sbjct: 1056 RLLRHILENILSNAIKYSAPGST------ITLDISKDEEHLLFQVRDEGIGIPLQDQEKL 1109

Query: 495  FQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTI 530
            F+AF +  +S      GTGLGL+I  R     GGTI
Sbjct: 1110 FEAFHR--ASNVGDIPGTGLGLSIVKRYVEFQGGTI 1143



 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 13/187 (6%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           +L+VDD +EN+  +S  L+          SG EA+      +                  
Sbjct: 9   VLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGLNT 68

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAK----GAVDYVTKPFSPPELLARVKTHL 135
              L+  P     P+IFL     ++ + +A A+    G VD++ +P +   L  + K +L
Sbjct: 69  AKILRSFPLAEQTPIIFLA---RQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYL 125

Query: 136 ELKQTRDNL--HHTLLEQARTA---EALACTSTRLG-ILVQNMQAGVLMTDAQGTIVVVN 189
           +L Q +  L  ++  LE +  +   +     S +L  I++ N+   V +TD  G    + 
Sbjct: 126 QLFQQKQTLQYYNNYLESSVKSVHFDVKNNHSEQLSEIILANISDTVFVTDLSGKFTFIC 185

Query: 190 PEFARLF 196
                +F
Sbjct: 186 SNIDNIF 192


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 91.7 bits (226), Expect = 1e-20
 Identities = 75/287 (26%), Positives = 131/287 (45%), Gaps = 44/287 (15%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           IL+VDD+  N+ ++S+LL   GY+   VTSG  AL+ +   +                +V
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139
           C+ +K++ + +DIP+IF++A  +  D ++AF  G VDY+TKPF   E++AR++    +++
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTIQR 130

Query: 140 TRDNLHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTDA-----QGTI-----VVVN 189
            R  L   + ++    E L  +   L  ++ +   G+    A      G I     +V+N
Sbjct: 131 QRIALKREVRKRREAEEVLYQSRALLSSVLNSALDGIAAMQAVRNPQTGDIEDFRCLVIN 190

Query: 190 PEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGVTHNFLAIESPEPLLKVELALED 249
           P  ++ FN     DL+                  G+ +   FL    P+   +    +E 
Sbjct: 191 PILSKAFNRS-REDLI------------------GRVLLKRFLQRLDPQLFDQFVNLVET 231

Query: 250 GRFFERD------------YVPIMLGDSSQGHFWLYRDISQRKQVEM 284
           G F  +D            +V + LGD   G     RDI+ RK++E+
Sbjct: 232 GTFLTQDIYFPIANSDWYHFVAVKLGD---GFAVTVRDITDRKRMEL 275



 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           ILL +D   N Q+   LL  LGY V  V +G+ AL  L     D++L+D++MP+MDG   
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
            E I++ +   + P II ++A     D+ +    G  DY++KP +
Sbjct: 71  CEMIKKEEELQDIP-IIFISALGDTFDKVKAFECGGVDYITKPFQ 114


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 86.7 bits (213), Expect = 3e-19
 Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 38/266 (14%)

Query: 274 RDISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIR 333
           RD+++R++ E ++  +LE E+ +                     +R K+ F +  SHE R
Sbjct: 44  RDVTERRRTEEVR-LALEREKEL---------------------SRLKTRFFSMASHEFR 81

Query: 334 TPMNAIIGMXXXXXXXXXX----XQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDL 389
           TP++  +                 ++      I+NS + ++ L++DIL  ++ EAGKL+ 
Sbjct: 82  TPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEF 141

Query: 390 EVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAV 449
                DL    ++ ++ +  S   +         +        D   +R IL NLLSNA+
Sbjct: 142 NPNWLDLKLLFQQFIEEIQLSVSDQYY--FDFICSAQDTKALVDERLVRSILSNLLSNAI 199

Query: 450 KFTEAG-QVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRR 508
           K++  G Q+K+ + +          QI F V D GIGI+P  Q+ +F+ F +G +   R 
Sbjct: 200 KYSPGGGQIKIALSLDSE-------QIIFEVTDQGIGISPEDQKQIFEPFHRGKN--VRN 250

Query: 509 FGGTGLGLAICVRLTALMGGTIWAES 534
             GTGLGL +  +   L  G+I  +S
Sbjct: 251 ITGTGLGLMVAKKCVDLHSGSILLKS 276


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 85.5 bits (210), Expect = 7e-19
 Identities = 81/340 (23%), Positives = 141/340 (41%), Gaps = 35/340 (10%)

Query: 229 HNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQV--EMIQ 286
           HNFL    PE L  V    +    +E       +    +  F L+++I + + +  + ++
Sbjct: 434 HNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVE 493

Query: 287 GQS-LEMERRMRQQLAEQNQELVXXXXXXXXXNRSKSEFLATMSHEIRTPMNAI---IGM 342
            QS L +++ +   +  Q +EL          N    +F    SH+++ P+N +   + +
Sbjct: 494 IQSALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQL 553

Query: 343 XXXXXXXXXXXQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEE 402
                        K F          + TLI+DIL ++K++     L          ++E
Sbjct: 554 LEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTD------VQE 607

Query: 403 ALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVE 462
            +D  + + +Q+             P +  D  +L Q+  NL++N +KF      K+ + 
Sbjct: 608 VVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKIKIW 667

Query: 463 VVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRL 522
                  + E    FAVQD GIGI P   + +F  F + ++     + GTG+GLAIC ++
Sbjct: 668 -----GDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTR--DEYKGTGMGLAICKKI 720

Query: 523 TALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFTV 562
                G IW ESN                  EGSTFYF++
Sbjct: 721 IEGHQGQIWLESN----------------PGEGSTFYFSI 744


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 76.3 bits (186), Expect = 4e-16
 Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +LL EDN +N+ +    L + GY V +  +G++A++        ++LMD+ +P +DG TA
Sbjct: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPI 845
           T+ I+     +  P IIA+TA++M  DRER +A+G +DY +KPI
Sbjct: 67  TKQIKGHPDGAHIP-IIALTAHAMASDRERAIAAGCDDYDTKPI 109



 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 29/113 (25%), Positives = 45/113 (39%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           +L+V+D + N  ++S  L  +GY       G +A+                         
Sbjct: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132
             ++K  P    IP+I LTA     D  +A A G  DY TKP     LL +++
Sbjct: 67  TKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 43/116 (37%), Positives = 57/116 (49%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           IL++DD      ++S  LE  GY       G +      Q Q                 V
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135
           C RL++D +T DIPV+ LTA  + QD +Q F  GA DY+TKPF   E+LARV+  L
Sbjct: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119



 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 26/103 (25%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           IL+ +D+     +  + L+  GY V    +G +  +   +   D++++D+ +P++DG T 
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            + +RR +  ++ P ++ +TA     D+ +   SG +DY++KP
Sbjct: 64  CQRLRRDERTADIP-VLMLTALGQIQDKIQGFDSGADDYLTKP 105


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 69.3 bits (168), Expect = 5e-14
 Identities = 35/113 (30%), Positives = 57/113 (50%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           +L+V+D      +IS +L+  G+  T    G EAL+++                    EV
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132
           C R+K DP+T+++PVI  ++  E+ D      +GA  Y+ KPF P EL+  +K
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142



 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +LL ED+   +++   +LK  G+ V +  +G EAL  L     D+V++D+ MP M+G   
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
              I +S  +++   +I  ++   E DR   +  G + Y++KP +
Sbjct: 90  CRRI-KSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQ 133


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 67.4 bits (163), Expect = 2e-13
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXX-XXXXXE 78
           IL+V+D +E   +I E LE E + T  VT+  E   R+ Q Q                 E
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQF-TCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72

Query: 79  VCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135
           VC R++Q P ++D  ++ LTA  E+ D +   + GA DY+ KPFSP EL+ARV+  L
Sbjct: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129



 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           IL+ ED+    Q+ +  L++  +   V N+G+  L    +   D++++D+ +P++DGL  
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
              IR+  G S+ P+I+ +TA   E DR   L++G +DY+ KP
Sbjct: 74  CTRIRQQPG-SKDPYILMLTAKGEEIDRIIGLSTGADDYLVKP 115


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 63.2 bits (152), Expect = 4e-12
 Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 734 PYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEM 793
           P  ++   IL+ +D+   +   ++ L+K G+ V++  NG+EAL+  A+   +VVL+D  M
Sbjct: 6   PIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVM 65

Query: 794 PEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPI 845
           P MDG    + + +   ++  P ++ +T    E   +R   +G  DYV+KPI
Sbjct: 66  PVMDGFACCQALMKIY-QNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPI 116



 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 4/140 (2%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           ILVVDD       +   L+ EG+     T+G EAL +  + +                  
Sbjct: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139
           C  L +  Q     V+ +T  +++  + +AF  GA+DYVTKP     L  RVK  L    
Sbjct: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL---- 129

Query: 140 TRDNLHHTLLEQARTAEALA 159
            ++ L H L    +  E LA
Sbjct: 130 YQNRLQHQLESVNQMLERLA 149


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 62.8 bits (151), Expect = 5e-12
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 16  ESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXX 75
           E++ +L+VDD    + ++ + LE +GY  T   +G EAL  +T                 
Sbjct: 6   ENYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMD 65

Query: 76  XXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135
                ++++Q+P    IPV+FL+A  +  + ++    GA  Y+ KPF P EL A+V++ L
Sbjct: 66  GYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCL 125

Query: 136 -ELKQTRDNLHHTLLEQARTAEA 157
            +  +   + +H L + AR   A
Sbjct: 126 RQADRLLQHNNHPLEDNARVQVA 148



 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 1/109 (0%)

Query: 736 SSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPE 795
           S  N  +LL +D+     + K  L+  GY V    NG+EAL  L     D+++ D+ MPE
Sbjct: 4   SKENYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPE 63

Query: 796 MDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
           MDG    E +R++   S  P ++ ++A     +R + L  G + Y++KP
Sbjct: 64  MDGYAFIEQVRQNPDISWIP-VMFLSAKGQSHNRVKGLNVGADIYMAKP 111


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 60.1 bits (144), Expect = 3e-11
 Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 4/103 (3%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +L+ +DNLI   + ++ L KLG+ VD   +G+  ++AL    YD V++D+ +P++DGL  
Sbjct: 4   LLIEDDNLIGNGL-QIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL-- 60

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            E +++ +   +   ++ +TA     +R + L SG +DY+ KP
Sbjct: 61  -EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKP 102



 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 41  GYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTAS 100
           G++  + T G   +  +T A                 EV  + + + Q  D+PV+ LTA 
Sbjct: 24  GFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQ--DVPVLILTAR 81

Query: 101 NEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQTRDNLHHTLLEQA 152
           +   + ++    GA DY+ KPF+  E+ AR++    L + R   HH+++EQA
Sbjct: 82  DTLDERVKGLQSGADDYLCKPFALAEVAARLQA---LIRRRYGYHHSVIEQA 130


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 56.2 bits (134), Expect = 5e-10
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 744 LAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATE 803
           + +D    +++ +  L  +GY V    +G+EA++   + D D+V++DV MP++DG    +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 804 HIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            +R+    S+ P II +TA     DR   L  G +DYV KP
Sbjct: 61  ELRK---ESDIP-IIMLTALGDVADRITGLELGADDYVVKP 97



 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 22  VVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEVCD 81
           +VDD      ++   L   GY       G EA+    ++                  VC 
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 82  RLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135
            L+++    DIP+I LTA  +  D +     GA DYV KPFSP EL AR+++ L
Sbjct: 61  ELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 55.5 bits (132), Expect = 8e-10
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           +L+VDD  E   ++S LLE EG+      +G EALQ++ ++                   
Sbjct: 4   LLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGI--- 60

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139
            + LK+  +  ++PV+ LTA  E  D +     GA D + KPF+  EL+AR+K  L    
Sbjct: 61  -ETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSA 119

Query: 140 TRDN 143
           +  N
Sbjct: 120 SPSN 123



 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +LL +D++   ++   LL+  G+ V+  NNG EAL  L +  Y +VL+DV MP+++G+  
Sbjct: 4   LLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGIET 62

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            + IR+    S  P ++ +TA   + DR   L  G +D + KP
Sbjct: 63  LKEIRKV---SNVP-VMMLTARGEDIDRVLGLELGADDCLPKP 101


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 740 LTILLAEDNL-INQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDG 798
           + ILL ED+L + + +A+ L  +L Y VD+  +   A    ++ +YD+V++DV +PE+DG
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQL-YTVDIATDASLAWDYASRLEYDLVILDVMLPELDG 59

Query: 799 LTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPI 845
           +T  +  R     S    I+ +TA     D+   L +G +DYV KP+
Sbjct: 60  ITLCQKWR---SHSYLMPILMMTARDTINDKITGLDAGADDYVVKPV 103


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQ--AQXXXXXXXXXXXXXXXX 77
           IL+V+D  +    I ++L  E Y   +VT G +A   +     +                
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132
           E+C +L+   Q   +PV+ LTA  E ++ ++    GA DY+TKPF   ELLAR++
Sbjct: 63  ELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLR 115


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 10/110 (9%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSAL-------AKGDYDVVLMDVEMP 794
           IL+ ED +  ++   L L++ GY V  V++G++AL+ L        +   D++++D+ +P
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 795 EMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
           +++GL     +R   G    P I+ V+A   E ++   L  G +DY++KP
Sbjct: 93  QVNGLDVCRSLR--FGGDNTP-ILIVSAKGSEMEKVTGLEVGADDYITKP 139



 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 15  PESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVT-------QAQXXXXXX 67
           P S  ILVV+D       I   L+ EGY    V  G +AL  +        QA       
Sbjct: 28  PPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIIL 87

Query: 68  XXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127
                     +VC  L+      + P++ ++A   + + +     GA DY+TKPFS  EL
Sbjct: 88  DIMLPQVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145

Query: 128 LARVK 132
           +AR +
Sbjct: 146 VARCR 150


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 49.3 bits (116), Expect = 6e-08
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 17  SFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXX 76
           S  +LVV++ ++    +   L+ EGY  +    G +   +  +                 
Sbjct: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSG 61

Query: 77  XEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLE 136
            E+C RL++      IP+I +TA ++ ++ +     GA DY+ KPF+  E  AR++  L 
Sbjct: 62  LELCRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR 119

Query: 137 LKQT 140
              T
Sbjct: 120 RTHT 123



 Score = 42.0 bits (97), Expect = 9e-06
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +L+ E+     +  +L LK  GY V V  +G +  +   +   D+++++  +P M GL  
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGL-- 62

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            E  RR +    R  II +TA     +R   L +G +DY+ KP
Sbjct: 63  -ELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKP 104


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 49.3 bits (116), Expect = 6e-08
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           IL+ ED ++ +   K + +  GY V    NG E    LA  + ++V+MD+ +P  +GL  
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
              +R          +I +T    E D+   L  G +DY++KP
Sbjct: 66  ARELREELSLP----LIFLTGRDNEVDKILGLEIGADDYLTKP 104



 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           ILVV+D       +  + E EGY      +G E    +                     +
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135
              L+++     +P+IFLT  + + D +     GA DY+TKPF+P EL  R +  L
Sbjct: 66  ARELREE---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           IL+ ED    +++  L L +  Y V   ++ + A++ + K +  ++L+D  +P   G+  
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSGIQF 63

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
            ++I++ +  +  P II +TA S E D   CL +G +DY++KP
Sbjct: 64  IQYIKKQESYAAIP-IIMLTAKSTEEDCIACLNAGADDYITKP 105



 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 83  LKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132
           +K+      IP+I LTA + ++D +     GA DY+TKPFSP  LLAR++
Sbjct: 67  IKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIE 116


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801
           +L+ ++N + + ++K L  + G+ +DV + G+  L+    G YD++++D  +P++ GL  
Sbjct: 5   LLVDDENALTEPLSKALGHQ-GHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
              I R  G S    ++ +TA     DR   L +G +DY+ KP
Sbjct: 64  CRQI-RILGHSTP--VLFLTAKDTLDDRVAGLDAGGDDYLIKP 103



 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQXXXXXXXXXXXXXXXXEV 79
           IL+VDD       +S+ L  +G++      G   L      Q                E+
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139
           C +++        PV+FLTA +   D +     G  DY+ KPF   ELLARV+  L  + 
Sbjct: 64  CRQIRI--LGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 140 TRDNLHHTL 148
             + +  TL
Sbjct: 122 HGETITETL 130


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 31/178 (17%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQA--QXXXXXXXXXXXXXXXX 77
           +L+V+D  +    + + L  E Y   +V  G  A   + Q                    
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLEL 137
           E+C +L+   Q   +P++ LTA ++  D ++    GA DY+ KPF   ELLAR+++    
Sbjct: 63  ELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRS---- 116

Query: 138 KQTRDNLHHTLLEQARTAEALACTSTRLGILVQNMQAGVLMTDAQGTIVVVNPEFARL 195
                        Q R+ E          +  Q +Q G    D  GT  VV PE AR+
Sbjct: 117 ------------LQRRSPE----------LQPQQLQVGQWWLD-YGTFAVVTPEQARI 151



 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 740 LTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKG--DYDVVLMDVEMPEMD 797
           + +LL ED        +  L++  Y VD V +G  A S L +G  +Y + + D  +P + 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 798 GLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844
           GL   + +R    RS  P I+ +TA     DR   L +G +DY+ KP
Sbjct: 61  GLELCQKLRGQ--RSSLP-ILMLTAKDQIADRVEGLDAGADDYLIKP 104


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDY--DVVLMDVEMPEMDG 798
           TIL+ ED  I +++    L    Y +    NG  AL  L   +   D+++ DV MPEMDG
Sbjct: 3   TILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDG 62

Query: 799 LTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
                 ++++   +  P+I  +TA     D  + + SG +DY+ KP +
Sbjct: 63  HGLITALQKNAKTAAIPFIF-LTALGTMQDFRKGMNSGADDYLIKPFK 109



 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 83  LKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLE 136
           L+++ +T  IP IFLTA    QD  +    GA DY+ KPF   +LL  V + L+
Sbjct: 69  LQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQ 122


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 7/129 (5%)

Query: 717 TEPPTLVSTEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLG-YPVDVVNNGQEA 775
           T+PP L   + I+    P S     +LL +D    ++  +  L+  G + VD+  N  EA
Sbjct: 38  TKPPYLPLHDCITAMAEPIS-----LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEA 92

Query: 776 LSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLAS 835
              L      +V+ D+ MP++DG    + +R        P ++ +TA  M GDR +   +
Sbjct: 93  WDYLQHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLP-VVFLTARGMTGDRIQGYQT 151

Query: 836 GMNDYVSKP 844
           G + ++SKP
Sbjct: 152 GCDAFLSKP 160



 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 1/138 (0%)

Query: 3   PSQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEG-YSTTFVTSGPEALQRVTQAQ 61
           P  P     T   E   +L+VDD       +   LE  G +      +  EA   +    
Sbjct: 41  PYLPLHDCITAMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHL 100

Query: 62  XXXXXXXXXXXXXXXXEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKP 121
                           +   +L++D + + +PV+FLTA     D +Q +  G   +++KP
Sbjct: 101 PALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKP 160

Query: 122 FSPPELLARVKTHLELKQ 139
           F P EL A V+  L  +Q
Sbjct: 161 FDPDELEAIVRNLLARQQ 178


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVV-NNGQEALSALAKGDYDVVLMDVEMP-EMDGL 799
           IL+ ED  +  Q    LLK  GY + V+ ++G  AL  +A+   D+VL+D+ +  E+DG+
Sbjct: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64

Query: 800 TATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846
              E I+          I+ +TA+S     ER   +    YV KP R
Sbjct: 65  EVAERIKSLYSIP----IVYLTAFSDGETLERAQKTNPQGYVIKPFR 107



 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 22/186 (11%)

Query: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTS-GPEALQRVTQAQ-XXXXXXXXXXXXXXXX 77
           IL+V+D +     I++LL+ +GY    + S G  AL+++ +                   
Sbjct: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64

Query: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLEL 137
           EV +R+K       IP+++LTA ++ + L +A       YV KPF   +LL+ V   +  
Sbjct: 65  EVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIAN 121

Query: 138 KQTRDNLHHTLLEQARTAEALACTST-------RLGILVQNMQAGVLMTDAQGTIVVVNP 190
            Q          +Q +  E    TST        L  + +++  G+ +    G I +   
Sbjct: 122 HQ----------QQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTA 171

Query: 191 EFARLF 196
            F R F
Sbjct: 172 YFCRFF 177


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 737 SSNLTILLAEDNLINQQVAKLLLKKLG--YPVDVVNNGQEALSALAKGDYDVVLMDVEMP 794
           ++ + +L+A+D+ I +Q    ++ +      +    NG++A++   +   DV LMD+ MP
Sbjct: 4   ATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMP 63

Query: 795 EMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSK 843
           E++G+ A   I      +    II +T Y  + D  R L +G   Y+ K
Sbjct: 64  EVEGVAAISAICAIVKFAR---IIVLTTYDSDEDIYRGLQAGAKGYLLK 109


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,255
Number of Sequences: 78
Number of extensions: 3889
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 37
Number of HSP's better than  0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 84
length of query: 1014
length of database: 48,235
effective HSP length: 72
effective length of query: 942
effective length of database: 42,619
effective search space: 40147098
effective search space used: 40147098
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001437 slr0081 
         (262 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001437 slr0081                                            526   e-152
SYNE-PCC-01-000414 sll0649                                            186   5e-50
SYNE-PCC-01-000242 sll0396                                            174   3e-46
SYNE-PCC-01-002033 slr0947                                            161   2e-42
SYNE-PCC-01-002486 slr1584                                            144   2e-37
SYNE-PCC-01-002672 slr1837                                            144   4e-37
SYNE-PCC-01-001461 slr0115                                            140   5e-36
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   137   4e-35
SYNE-PCC-01-000518 sll0789                                            131   2e-33
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   130   3e-33
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  130   6e-33
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   122   9e-31
SYNE-PCC-01-000523 sll0797                                            120   3e-30
SYNE-PCC-01-000877 sll1330                                            112   1e-27
SYNE-PCC-01-002086 slr1042                                             90   8e-21
SYNE-PCC-01-002731 slr1909                                             79   2e-17
SYNE-PCC-01-001133 sll1673                                             73   8e-16
SYNE-PCC-01-002489 slr1588                                             73   1e-15
SYNE-PCC-01-001306 sll1905                                             70   9e-15
SYNE-PCC-01-002635 slr1783                                             63   8e-13
SYNE-PCC-01-002788 slr1982                                             62   2e-12
SYNE-PCC-01-001132 sll1672                                             57   5e-11
SYNE-PCC-01-002879 slr2104                                             56   1e-10
SYNE-PCC-01-002618 slr1760                                             55   2e-10
SYNE-PCC-01-000800 sll1228                                             54   4e-10
SYNE-PCC-01-002873 slr2098                                             54   7e-10
SYNE-PCC-01-001075 sll1592                                             52   2e-09
SYNE-PCC-01-002617 slr1759                                             50   6e-09
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    49   2e-08
SYNE-PCC-01-000608 sll0921                                             48   4e-08
SYNE-PCC-01-002221 slr1213                                             47   8e-08
SYNE-PCC-01-001160 sll1708                                             46   1e-07

>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  526 bits (1355), Expect = e-152
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MLVKYHLVGFPMATLEAPPHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAV 60
           MLVKYHLVGFPMATLEAPPHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAV
Sbjct: 1   MLVKYHLVGFPMATLEAPPHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAV 60

Query: 61  DDGRDALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGS 120
           DDGRDALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGS
Sbjct: 61  DDGRDALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGS 120

Query: 121 EMEKVTGLEVGADDYITKPFSLKELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECR 180
           EMEKVTGLEVGADDYITKPFSLKELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECR
Sbjct: 121 EMEKVTGLEVGADDYITKPFSLKELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECR 180

Query: 181 VLMRGEEVSLAPKEFRLLELFMSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREK 240
           VLMRGEEVSLAPKEFRLLELFMSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREK
Sbjct: 181 VLMRGEEVSLAPKEFRLLELFMSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREK 240

Query: 241 LEQDPSQPEYLVTVRGFGYRFG 262
           LEQDPSQPEYLVTVRGFGYRFG
Sbjct: 241 LEQDPSQPEYLVTVRGFGYRFG 262


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  186 bits (473), Expect = 5e-50
 Identities = 103/235 (43%), Positives = 143/235 (60%), Gaps = 13/235 (5%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           IL+VED+  I + I  +L+ E +     +DG   L + QE          DLI+LD+MLP
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQE-------QVPDLIVLDLMLP 66

Query: 93  QVNGLDVCRSLRF--GGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150
           +++GL+VC  +R   G  +  IL+++AKG E++++ GL  GADDY+ KPFS +ELVAR R
Sbjct: 67  KLDGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVR 126

Query: 151 AMIRRQGLAGNNIAPFRKFR----DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPR 206
           A++RRQ   G  +    +      DL  +        R EE+ L   EF LL  FMSYP 
Sbjct: 127 ALLRRQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPG 186

Query: 207 RVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
           RVW+R QLIE +WG DF GD + VD HIR LR+K+E DP+ P ++ TV G GY+F
Sbjct: 187 RVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  174 bits (441), Expect = 3e-46
 Identities = 96/231 (41%), Positives = 137/231 (59%), Gaps = 13/231 (5%)

Query: 30  SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89
           SHR+LVVE+E  +   + L L+ EGY+V    DG       QEF  D       LII++ 
Sbjct: 2   SHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPD-------LIIVNG 54

Query: 90  MLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
            LP ++GL++CR LR  G   PI++++AK    E+V GL+ GADDYI KPF+  E  AR 
Sbjct: 55  ALPGMSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARI 114

Query: 150 RAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEE-VSLAPKEFRLLELFMSYPRRV 208
           R  +RR     + +  F   R    + +  R + RG+  + L  KEF LL+  +S+ R+V
Sbjct: 115 RVQLRRTHTTSDEVLQFADLR----FNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQV 170

Query: 209 WSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259
            +REQ++E +WG DFMGDS  ++V+IR+LR KLE    +P  + TVRG GY
Sbjct: 171 LTREQILERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGY 220


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  161 bits (408), Expect = 2e-42
 Identities = 93/232 (40%), Positives = 139/232 (59%), Gaps = 13/232 (5%)

Query: 35  VVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLPQV 94
           +V+DE SIR  +   L   GYEV    DG +A+A   E   DP     DL++LD+M+P++
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHE--SDP-----DLVVLDVMMPKL 53

Query: 95  NGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAMIR 154
           +G  VC+ LR   D  PI++++A G   +++TGLE+GADDY+ KPFS KEL AR R+++R
Sbjct: 54  DGYGVCQELRKESD-IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112

Query: 155 R---QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211
           R    G+ G   +   +   + +   + +V    E + L   EF LLEL +S     +SR
Sbjct: 113 RVDKNGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSR 172

Query: 212 EQLIEHIWGI--DFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
            ++++ +WG   +   D++ VDVHI  LR KLE+DPS PE ++T RG GY F
Sbjct: 173 SEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  144 bits (364), Expect = 2e-37
 Identities = 87/229 (37%), Positives = 137/229 (59%), Gaps = 10/229 (4%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           RIL+VED++ + ET+  +L ++   +Y VD   DA +L  +++    +   DL+ILD+ML
Sbjct: 2   RILLVEDDLPLAETLAEALSDQ---LYTVDIATDA-SLAWDYAS---RLEYDLVILDVML 54

Query: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151
           P+++G+ +C+  R      PIL+++A+ +  +K+TGL+ GADDY+ KP  L EL AR RA
Sbjct: 55  PELDGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRA 114

Query: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211
           ++RR G A     P  ++  + L P    V    E +SL  KE+ +LEL +   RRV SR
Sbjct: 115 LLRR-GCA--TCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSR 171

Query: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYR 260
             +I+ IW ++   +  TV VH+R LR+KL+      + + TV G GYR
Sbjct: 172 SMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  144 bits (362), Expect = 4e-37
 Identities = 87/240 (36%), Positives = 136/240 (56%), Gaps = 23/240 (9%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           IL+V+DE ++ E +  +L  +G+ +   D G+  LA+        GQ   DL+ILD MLP
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIA-----GQ--YDLLILDWMLP 56

Query: 93  QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152
           QV+GL++CR +R  G +TP+L ++AK +  ++V GL+ G DDY+ KPF L+EL+AR RA+
Sbjct: 57  QVSGLEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRAL 116

Query: 153 IRRQ----------GLAGNNIAPFRKFR-DLVLYPQECRVLMRGEEVSLAPKEFRLLELF 201
           +RRQ          G   NN+        D+      C    +G+ ++L+ KE  LL LF
Sbjct: 117 LRRQSHGETITETLGAVKNNLLSVNNVSLDVANQVAYC----QGQRIALSEKEVALLTLF 172

Query: 202 MSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
           +  P ++ S E++  H+W  +    S  +   +R LR K+EQ P+ P  + +V G GY F
Sbjct: 173 LQAPGQILSHEEIYSHLWPGESPPSSNVLAALVRLLRRKIEQ-PNAPRLINSVYGKGYCF 231


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  140 bits (352), Expect = 5e-36
 Identities = 81/236 (34%), Positives = 130/236 (55%), Gaps = 19/236 (8%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           RIL+++D+ +I + + ++L+  GY+V    DG    AL  +   D       LI+LD+ML
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPD-------LIMLDLML 55

Query: 92  PQVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
           P+V+G  VC+ LR        P+L+++A G   +K+ G + GADDY+TKPF ++E++AR 
Sbjct: 56  PKVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115

Query: 150 RAMIRRQGLAGNNIAPFRKFRD------LVLYPQECRVLMRGEEVSLAPKEFRLLELFMS 203
           RA++RR     + I    K  +      L L P+    +  G+ + L   EF LL   + 
Sbjct: 116 RALLRRT----DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQ 171

Query: 204 YPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259
              +  S   ++  +WG +   D +T+ VHIR LR KLE +P +P ++ TV G GY
Sbjct: 172 RHGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  137 bits (345), Expect = 4e-35
 Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 16/235 (6%)

Query: 30  SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89
           + +IL+VEDE +IRE I L L ++ Y+V    D + A+    +  E+P      LI+LD 
Sbjct: 2   TRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAI---NKIKENP-----KLILLDW 53

Query: 90  MLPQVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVA 147
           MLP  +G+   + ++        PI++++AK +E + +  L  GADDYITKPFS + L+A
Sbjct: 54  MLPGRSGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLA 113

Query: 148 RCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRR 207
           R  A+ RR        + F +  +L +     RV  + +E++L+  EF+LL  FM +P +
Sbjct: 114 RIEAVWRR---IYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEK 170

Query: 208 VWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPE-YLVTVRGFGYRF 261
           V+SREQL+  IW  D   + +TVD +IR LR  L   P Q E Y+ TVRG GYRF
Sbjct: 171 VYSREQLLNRIWHNDLEVEYRTVDSYIRRLRRNLA--PFQCEHYIQTVRGSGYRF 223


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  131 bits (330), Expect = 2e-33
 Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 22/237 (9%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           R+L+VEDE  +   +  +L+ E Y V  V DG  A + L     D G     L I D M+
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYL-----DQGWVNYTLAIFDWMV 56

Query: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151
           P ++GL++C+ LR    + PIL+++AK    ++V GL+ GADDY+ KPF + EL+AR R+
Sbjct: 57  PGLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRS 116

Query: 152 MIRR-------QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSY 204
           + RR       Q   G     +  F   V+ P++ R       ++L  KEF+LLE FM +
Sbjct: 117 LQRRSPELQPQQLQVGQWWLDYGTF--AVVTPEQAR-------ITLTAKEFQLLEYFMKH 167

Query: 205 PRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
           P+++ S EQ+   +W +     S  V   +R LR KLE + S    + TV G GYRF
Sbjct: 168 PQQILSSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGYRF 223


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  130 bits (328), Expect = 3e-33
 Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 19/238 (7%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           +ILVVEDE+  R T+    + EGY+V+  ++G +   +L   +       ++L+++DI L
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHN-------INLVVMDINL 57

Query: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151
           P  NGL + R LR    + P++ ++ + +E++K+ GLE+GADDY+TKPF+ +EL  R R 
Sbjct: 58  PGKNGLLLARELR-EELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARN 116

Query: 152 MIRR-------QGLAGNNIAPFRKFR-DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMS 203
           ++ R       +   G     F  ++ DL        +   G+E  L   EFR +  F  
Sbjct: 117 LLHRAMPHQEKENTFGREFYRFNGWKLDL---NSHSLITPEGQEFKLPRSEFRAMLHFCE 173

Query: 204 YPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
            P ++ +RE+L++ + G +     +TVDV IR +R+  E  P+ P  ++T+ G GYRF
Sbjct: 174 NPGKLQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  130 bits (326), Expect = 6e-33
 Identities = 72/230 (31%), Positives = 134/230 (58%), Gaps = 11/230 (4%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           ++L+V+D++ + E +   L+ EG++V   ++G +AL  L E        +  L++LD+M+
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE--------SYKLVLLDVMM 54

Query: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151
           P++NG++  + +R    N P+++++A+G ++++V GLE+GADD + KPF+ +EL+AR +A
Sbjct: 55  PKLNGIETLKEIR-KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKA 113

Query: 152 MIRRQGLAGNNIA--PFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVW 209
           ++RR     NNI+      F  + L+          E ++L   EF++L L +     V 
Sbjct: 114 ILRRSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVV 173

Query: 210 SREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259
           SRE+L   +         +++D+HI  LR KL +  ++P +  T+RG GY
Sbjct: 174 SREELSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  122 bits (307), Expect = 9e-31
 Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 15/231 (6%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           RIL++ED+  I   + + L + G+ V    DG+  +A L         A  D ++LD+ L
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTS-------APYDAVVLDLTL 54

Query: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151
           P+++GL+V +  R    + P+LI++A+ +  E+V GL+ GADDY+ KPF+L E+ AR +A
Sbjct: 55  PKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQA 114

Query: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211
           +IRR+    +++    +   + L   +  V +  + +SL  +E++LLELFM    RV SR
Sbjct: 115 LIRRRYGYHHSVI---EQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSR 171

Query: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRFG 262
             + E +   D    S  +DVHI  LR+KL +     +++ TV G GY  G
Sbjct: 172 SSIEEKLSSWDEEISSGALDVHIYNLRQKLGK-----QFIRTVHGVGYALG 217


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  120 bits (302), Expect = 3e-30
 Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 13/236 (5%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQ-EFSEDPGQAAVDLIILDIM 90
           RIL+VEDE  +   I   L  E Y V  V DG  A   L+ +++E        L I+D +
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTE------YTLAIVDWL 55

Query: 91  LPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150
           LP ++GL++C+ LR  G++ P+L+++A G    +V GL+ GADDY+TKPF + EL+AR R
Sbjct: 56  LPGLSGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLR 115

Query: 151 AMIRRQGLAGNNIAPFRKF-----RDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYP 205
           A+ RR       I     F      +L+       + +  +E++L  +EF++ +  M  P
Sbjct: 116 ALQRRSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNP 175

Query: 206 RRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
            R+ S  ++ + +W +D    S  V   +R +R KL Q  + P  + TV G GYRF
Sbjct: 176 ERIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  112 bits (280), Expect = 1e-27
 Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 15/231 (6%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           I VVE    +R  +   LQ+ GY V        A    Q F+         L ++D  L 
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQAR---QAFNNQ----LPTLAVIDSDLT 58

Query: 93  QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152
             +G+++CR L +    + I I+SAK +E + V GL+ GADDY+TKPF ++E +AR   +
Sbjct: 59  DGDGIELCRWL-YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECL 117

Query: 153 IRR-QGLAGNNIAPFRKFR-DLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWS 210
           IRR + +A   +  +   + DLV    + RV  +G  V L P+EF LL +         S
Sbjct: 118 IRRVRTVAAPLLLDYGVLKIDLV----QRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALS 173

Query: 211 REQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261
           R +L+   W  + + + +T+D H+  LR+K+E DP QP  + TVR  GYRF
Sbjct: 174 RTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 89.7 bits (221), Expect = 8e-21
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           +L+VED  S RE I   L++ G++V    DG +AL  LQ FS D       L++LDI++P
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPD-------LVVLDIVMP 82

Query: 93  QVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150
           ++NG +VCR ++      N P+++ S+KG E ++  G+  GAD YI KPF   ELV   +
Sbjct: 83  RMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142

Query: 151 AMIR 154
            ++R
Sbjct: 143 QLLR 146


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 78.6 bits (192), Expect = 2e-17
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 16/162 (9%)

Query: 30  SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89
           ++ +L+V+D+ ++   +   L+ +GY+V    +GR+AL LL            D+I+ DI
Sbjct: 7   NYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTT-------TVPDMIVCDI 59

Query: 90  MLPQVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVA 147
           M+P+++G      +R   D +  P++ +SAKG    +V GL VGAD Y+ KPF  +EL A
Sbjct: 60  MMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAA 119

Query: 148 RCRAMIRRQG--LAGNN-----IAPFRKFRDLVLYPQECRVL 182
           + ++ +R+    L  NN      A  +  RD+ L P E +V+
Sbjct: 120 QVQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVI 161


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 73.2 bits (178), Expect = 8e-16
 Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 11/147 (7%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           IL+V+D  +  + +   L   GY V +V  G+ AL  LQ           DLI+LDI +P
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQV-------KRPDLILLDIKMP 63

Query: 93  QVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150
            ++G  VC  ++   +  + PI+ +SA G   +KV   E G  DYITKPF ++E+VAR  
Sbjct: 64  DMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123

Query: 151 AM--IRRQGLAGNNIAPFRKFRDLVLY 175
               I+RQ +A       R+  + VLY
Sbjct: 124 GQFTIQRQRIALKREVRKRREAEEVLY 150


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 7/126 (5%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           ILVVEDE  IRE I  +L  E Y++   ++G  AL LL      P     DLII D+M+P
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMP-----DLIICDVMMP 58

Query: 93  QVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150
           +++G  +  +L+        P + ++A G+  +   G+  GADDY+ KPF  ++L+    
Sbjct: 59  EMDGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVN 118

Query: 151 AMIRRQ 156
           + +++Q
Sbjct: 119 SRLQKQ 124


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 69.7 bits (169), Expect = 9e-15
 Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 9/125 (7%)

Query: 28  PPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIIL 87
           P S  ILVV+D       I   L+ EGY    V  G +AL  +        QA  DLI+L
Sbjct: 15  PESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVT-------QAQPDLILL 67

Query: 88  DIMLPQVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145
           D+M+P ++GL+VC  L+      + P++ ++A   + + +     GA DY+TKPFS  EL
Sbjct: 68  DLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127

Query: 146 VARCR 150
           +AR +
Sbjct: 128 LARVK 132



 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 10/116 (8%)

Query: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92
           IL+ ED +  ++   L L++ GY V  V++G++AL+ L        +   D++++D+ +P
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSAL-------AKGDYDVVLMDVEMP 794

Query: 93  QVNGLDVCRSLR--FGGDNTP-ILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145
           +++GL     +R   G    P I+ V+A   E ++   L  G +DY++KP  L+ L
Sbjct: 795 EMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEAL 850


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 63.2 bits (152), Expect = 8e-13
 Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 13/153 (8%)

Query: 33  ILVVEDEVSIRETIVLSLQEEG-YEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           +L+V+DE  +RE++   L++ G ++V    +  +A   LQ            L+I DIM+
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPA-------LVISDIMM 110

Query: 92  PQVNGLDVCRSLRFGG--DNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
           PQV+G    + LR      + P++ ++A+G   +++ G + G D +++KPF   EL A  
Sbjct: 111 PQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIV 170

Query: 150 RAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVL 182
           R ++ RQ  + +  +   K +++    QE R L
Sbjct: 171 RNLLARQQASSDAGSESAKLQEIY---QEIRAL 200


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           ++L+VED    R+ +   L  +GYEV    DG  A+ +    SE P      LI++D+ L
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMA--ISESP-----QLILMDMSL 58

Query: 92  PQVNGLDVCRSLRF--GGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
           P ++G    + ++    G + PI+ ++A     ++   +  G DDY TKP  +K L+ + 
Sbjct: 59  PIIDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118

Query: 150 RAMI 153
            A+I
Sbjct: 119 EALI 122


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 57.4 bits (137), Expect = 5e-11
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 29  PSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILD 88
           P ++ILVV+D+   R+ ++  L   G+E+    +G++A+AL + +          LI +D
Sbjct: 628 PVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEP-------HLIFMD 680

Query: 89  IMLPQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPF 140
           + +P ++G +  + ++    G+ T ++ ++A   E EK   L  G DD++ KPF
Sbjct: 681 MRMPVMDGYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 12  MATLEAPPHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQ 71
           ++ LEA P   Q         IL+VED    RE     L  +G  V   ++G++AL LL 
Sbjct: 699 VSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLT 758

Query: 72  EFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFG--GDNTPILIVSAKGSEMEKVTGLE 129
             +        D I++DI +P +NG D  R++R      N PI+ ++A     ++   L+
Sbjct: 759 SNT-------YDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALD 811

Query: 130 VGADDYITKP 139
            G +D++TKP
Sbjct: 812 AGMNDHLTKP 821


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
           +ILVV+D+  +R  + + LQ+EG+ V    +G +AL    E          ++++LD ++
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKP-------EVVLLDAVM 65

Query: 92  PQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
           P ++G   C++L   +   +  +L+++    E       E GA DY+TKP     L  R 
Sbjct: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRV 125

Query: 150 RAMIRRQGL 158
           + ++ +  L
Sbjct: 126 KRLLYQNRL 134


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 54.3 bits (129), Expect = 4e-10
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 15/145 (10%)

Query: 11  PMATLEAPPHSLQHQEI--PP----SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGR 64
           P+  + AP  + +   +  PP    + ++LVV+D    R  +   L   G+ V   ++G 
Sbjct: 392 PVQVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGE 451

Query: 65  DALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFG--GDNTPILIVSAKGSEM 122
            A+AL + +          +I++D+ +P ++G    + ++    G +T I+ ++A   E 
Sbjct: 452 MAIALWESWHPQ-------VILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEG 504

Query: 123 EKVTGLEVGADDYITKPFSLKELVA 147
           E+   L  G DD+++KPF  +EL+A
Sbjct: 505 ERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 19  PHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPG 78
           PH L   +     R+LVV+D    R  +   L++  + V  V+ G +AL  L E   D  
Sbjct: 759 PHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAE--ADRE 816

Query: 79  QAAVDLIILDIMLPQVNGLDVCRSLRFGGDN--TPILIVSAKGSEMEKVTGLEVGADDYI 136
                ++ +D  +P ++GL+V R L+  G N    I IV+A G E   V    +G DD +
Sbjct: 817 NHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVL 876

Query: 137 TKPFS 141
            KP S
Sbjct: 877 VKPIS 881



 Score = 43.1 bits (100), Expect = 9e-07
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 32   RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91
            RIL+VED    +E     L++ G+ V    +G  AL  L          A  L+++D+ +
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNN-------NAYALVLMDMQM 978

Query: 92   PQVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145
            P+++G++   ++R        PI+ ++A   + ++   L+ G +D++ KP   +EL
Sbjct: 979  PEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 28  PPSHRILVVEDEVSIRETIVLSL-QEEGYEVYA-VDDGRDALALLQEFSEDPGQAAVDLI 85
           P S RIL+VED+   R  +V  L QE G +V    +DG  A+A +        Q   D++
Sbjct: 5   PTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVN-------QQLFDVV 57

Query: 86  ILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145
           ILD+ LP + G++ C  ++      P+LI+++          +E  A  Y  K  + + L
Sbjct: 58  ILDVGLPGIGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETL 117

Query: 146 VARCRAM 152
           V   R++
Sbjct: 118 VLAIRSV 124


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 50.4 bits (119), Expect = 6e-09
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 10/122 (8%)

Query: 27   IPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLII 86
            + P+ +IL+ ED +  ++     L   GY V   ++G++ +  L++          DL++
Sbjct: 1186 LQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEK-------KFYDLVL 1238

Query: 87   LDIMLPQVNGLDVCRSLR--FGGDNTP-ILIVSAKGSEMEKVTGLEVGADDYITKPFSLK 143
            +D+ +P ++G+  CR +R     +  P I+ ++A     ++   L+ G D YI+KP S+ 
Sbjct: 1239 MDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISIN 1298

Query: 144  EL 145
            +L
Sbjct: 1299 QL 1300


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 12/122 (9%)

Query: 32  RILVVEDEVSIRETIVLSLQ-EEGYEVYA-VDDGRDALALLQEFSEDPGQAAVDLIILDI 89
           ++L+++D   +R  I   ++ ++ +EV A V  G + +++         Q + D+IILD+
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVAL-------QTSPDVIILDL 58

Query: 90  MLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYI---TKPFSLKELV 146
            +  ++GLD  + LR  G +  ILI++   ++ +  T ++ GAD Y+   T+P +L E +
Sbjct: 59  NMKGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118

Query: 147 AR 148
            R
Sbjct: 119 KR 120


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 47.8 bits (112), Expect = 4e-08
 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 11/124 (8%)

Query: 32  RILVVEDEVSIRETIVLSL-QEEGYE-VYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89
           RI ++EDE  IR+ +  +L  E  +E V    +GR  L ++Q       Q   D++I+DI
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQ-------QTRPDVVIIDI 57

Query: 90  MLPQVNGLDVCRSLRFGGDNTP--ILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVA 147
            LP +NG+DV + L+ G  N    ++I++    E   +     GAD Y  K    + L+ 
Sbjct: 58  GLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIE 117

Query: 148 RCRA 151
             +A
Sbjct: 118 AIQA 121


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 46.6 bits (109), Expect = 8e-08
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 14/120 (11%)

Query: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAV-DDGRDALALLQEFSEDPGQAAVDLIILDIM 90
           +IL+VEDE  + + I   L+ +GYE+  +  DG  AL  + EF         DL++LDI 
Sbjct: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYP-------DLVLLDIR 56

Query: 91  LP-QVNGLDVCRSLRFGGDNTPILIVSA--KGSEMEKVTGLEVGADDYITKPFSLKELVA 147
           +  +++G++V   ++    + PI+ ++A   G  +E+    +     Y+ KPF  ++L++
Sbjct: 57  IKGEIDGIEVAERIK-SLYSIPIVYLTAFSDGETLERAQ--KTNPQGYVIKPFRREQLLS 113


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 50/252 (19%)

Query: 19  PHSLQHQEIPPSHRILVVEDEVSIRETIVLSL-QEEGYEVYA-VDDGRDALALLQEFSED 76
           PH ++ +   P  +IL+VED+  ++  +  +L   E +E+   VD+G  A+         
Sbjct: 6   PHRVKIEPCLPM-KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQ-------- 56

Query: 77  PGQAAV---DLIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGAD 133
             QAAV   DLI++DI LP ++G++  + ++       I+++++     E +  L  GAD
Sbjct: 57  --QAAVLNPDLIVMDIGLPGLDGIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGAD 114

Query: 134 DYITKPFSLKELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLM---------- 183
            Y  K  +L+ L+    A   + G                L PQ  RV++          
Sbjct: 115 AYCVKGATLERLILAIAA--AQDGAT-------------YLDPQIARVVVENLKPPVPEG 159

Query: 184 RGEEVSLAPKEFRLLELFMSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQ 243
           + +  SL+ +E  +L+L +       S +++ + ++       + T+  H+R +  KL  
Sbjct: 160 QADVSSLSEREIDVLKLIVEGK----SNQEIAQTLY-----LSTNTIKTHVRGIMNKLSV 210

Query: 244 DPSQPEYLVTVR 255
           D      ++ +R
Sbjct: 211 DDRVQAAVIALR 222


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.323    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,824
Number of Sequences: 78
Number of extensions: 990
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 32
Number of HSP's better than  0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 37
length of query: 262
length of database: 48,235
effective HSP length: 61
effective length of query: 201
effective length of database: 43,477
effective search space:  8738877
effective search space used:  8738877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001461 slr0115 
         (241 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001461 slr0115                                            484   e-140
SYNE-PCC-01-002033 slr0947                                            180   3e-48
SYNE-PCC-01-000414 sll0649                                            160   3e-42
SYNE-PCC-01-002486 slr1584                                            153   4e-40
SYNE-PCC-01-000242 sll0396                                            151   2e-39
SYNE-PCC-01-002672 slr1837                                            142   8e-37
SYNE-PCC-01-001437 slr0081                                            140   5e-36
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  133   5e-34
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   128   1e-32
SYNE-PCC-01-000877 sll1330                                            118   2e-29
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   118   2e-29
SYNE-PCC-01-000518 sll0789                                            115   1e-28
SYNE-PCC-01-000523 sll0797                                            109   9e-27
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   105   1e-25
SYNE-PCC-01-001306 sll1905                                            102   1e-24
SYNE-PCC-01-002731 slr1909                                            101   3e-24
SYNE-PCC-01-001133 sll1673                                             96   8e-23
SYNE-PCC-01-002489 slr1588                                             96   1e-22
SYNE-PCC-01-002635 slr1783                                             93   7e-22
SYNE-PCC-01-002086 slr1042                                             91   4e-21
SYNE-PCC-01-002788 slr1982                                             86   8e-20
SYNE-PCC-01-002618 slr1760                                             73   1e-15
SYNE-PCC-01-000800 sll1228                                             64   6e-13
SYNE-PCC-01-000608 sll0921                                             60   5e-12
SYNE-PCC-01-002879 slr2104                                             56   9e-11
SYNE-PCC-01-002873 slr2098                                             55   2e-10
SYNE-PCC-01-001132 sll1672                                             55   2e-10
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    55   2e-10
SYNE-PCC-01-001575 slr0312                                             52   2e-09
SYNE-PCC-01-002221 slr1213                                             50   5e-09
SYNE-PCC-01-001160 sll1708                                             50   5e-09
SYNE-PCC-01-002617 slr1759                                             49   1e-08
SYNE-PCC-01-002778 slr1969                                             46   1e-07

>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  484 bits (1247), Expect = e-140
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
           FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPS 180
           RTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPS
Sbjct: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 181 DILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEEGGGSP 240
           DILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEEGGGSP
Sbjct: 181 DILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEEGGGSP 240

Query: 241 T 241
           T
Sbjct: 241 T 241


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  180 bits (457), Expect = 3e-48
 Identities = 96/235 (40%), Positives = 145/235 (61%), Gaps = 8/235 (3%)

Query: 6   IIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTVCQ 65
           ++DD+ +I  ++   L M GY+V  A DG +  A   +  PDL++LD+M+PK+DG+ VCQ
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 66  RLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTDR- 124
            LR++   +DIP++MLTALG + D+I G + GADDY+ KPF  +E+ AR+R++LRR D+ 
Sbjct: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117

Query: 125 -IPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDIL 183
            +P     S +L    + +   + +     + I+LT +EF LL  L+ R G+  S S+IL
Sbjct: 118 GMP-GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 176

Query: 184 REVWGYEPDDDIET--IRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEEG 236
           +EVWGY P+  ++T  + VHI  LR KLE +P  P  I T  G GY  +   E G
Sbjct: 177 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPG 231


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  160 bits (406), Expect = 3e-42
 Identities = 93/234 (39%), Positives = 134/234 (57%), Gaps = 6/234 (2%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           MP ILI++DD  I+ L+   LE   +      DG  G  +  +  PDLI+LDLMLPK+DG
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
             VC R+R+   + D  +LMLTA G+  D+I G  +GADDYL KPF   E++ARVRALLR
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130

Query: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWF----GKSIKLTHLEFELLHCLLQRHGQT 176
           R  ++ Q     +I       +  ++ +A  +     + ++LT LEF LL   +   G+ 
Sbjct: 131 R--QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRV 188

Query: 177 VSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230
            + + ++ ++WG +   D   +  HIR LR K+EP+P  P FIKTV G GY  E
Sbjct: 189 WNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  153 bits (387), Expect = 4e-40
 Identities = 89/233 (38%), Positives = 135/233 (57%), Gaps = 7/233 (3%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           RIL+++DD  +++ ++  L    Y V  A D       A +L+ DL++LD+MLP++DG T
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
           +CQ+ R       +P+LM+TA   I DKI G D+GADDY+ KP D+ E+ ARVRALLRR 
Sbjct: 62  LCQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119

Query: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182
                 A    +L  GP+ L P  +E  +  + + LT  E+ +L  LL+   + +S S I
Sbjct: 120 -----CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMI 174

Query: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEE 235
           +  +W  E   + +T++VH+R LR KL+        I+TV+G GY L   TE+
Sbjct: 175 IDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEK 227


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  151 bits (382), Expect = 2e-39
 Identities = 87/227 (38%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           R+L+++++  ++  + + L+  GYDV  A DG+KG   A +  PDLI+++  LP + G  
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
           +C+RLR  E  + IP++++TA   +++++ G D+GADDY+ KPF+ +E  AR+R  LRRT
Sbjct: 64  LCRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121

Query: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182
                     E+L    L       E     + I LT  EFELL  LL    Q ++   I
Sbjct: 122 H-----TTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQI 176

Query: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229
           L  VWGY+   D   I V+IR+LR KLE     PR I+TV G GY L
Sbjct: 177 LERVWGYDFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVL 222


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  142 bits (359), Expect = 8e-37
 Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 8/235 (3%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           M  IL++DD+ A+++ +S  L   G+ +  A  G  G A+A+  Q DL++LD MLP+V G
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
             +C+++R    +   PVL LTA   + D++ G D+G DDYL KPF++ E+LARVRALLR
Sbjct: 61  LEICRQIRILGHST--PVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLR 118

Query: 121 R-----TDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQ 175
           R     T      A  + +L+   ++L      A   G+ I L+  E  LL   LQ  GQ
Sbjct: 119 RQSHGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQ 178

Query: 176 TVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230
            +S  +I   +W  E       +   +R LR K+E  P  PR I +VYG GYC E
Sbjct: 179 ILSHEEIYSHLWPGESPPSSNVLAALVRLLRRKIE-QPNAPRLINSVYGKGYCFE 232


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  140 bits (352), Expect = 5e-36
 Identities = 81/236 (34%), Positives = 130/236 (55%), Gaps = 19/236 (8%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPD-------LIMLDLML 55
           RIL+++D+ +I + + ++L+  GY+V    DG    AL  +   D       LI+LD+ML
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 56  PKVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115
           P+V+G  VC+ LR        P+L+++A G   +K+ G + GADDY+TKPF ++E++AR 
Sbjct: 92  PQVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 116 RALLRRT----DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQ 171
           RA++RR     + I    K  +      L L P+    +  G+ + L   EF LL   + 
Sbjct: 150 RAMIRRQGLAGNNIAPFRKFRD------LVLYPQECRVLMRGEEVSLAPKEFRLLELFMS 203

Query: 172 RHGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
              +  S   ++  +WG +   D +T+ VHIR LR KLE +P +P ++ TV G GY
Sbjct: 204 YPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  133 bits (335), Expect = 5e-34
 Identities = 79/230 (34%), Positives = 137/230 (59%), Gaps = 6/230 (2%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKG-QALAVQLQPDLIMLDLMLPKVD 59
           M ++L++DDD  +++L+S  LE+ G+DV+ A +G++  Q L    +  L++LD+M+PK++
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYK--LVLLDVMMPKLN 58

Query: 60  GFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119
           G    + +R+    +++PV+MLTA G+  D++ G + GADD L KPF+  E++AR++A+L
Sbjct: 59  GIETLKEIRK---VSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115

Query: 120 RRTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSP 179
           RR+        + EIL+   +TL      A +  +++ LT  EF++L  LL+  G  VS 
Sbjct: 116 RRSASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSR 175

Query: 180 SDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229
            ++  EV          ++ +HI +LR KL     +P + KT+ G GY L
Sbjct: 176 EELSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYAL 225


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  128 bits (322), Expect = 1e-32
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           RIL+I+DD  I + + I L   G+ V    DG  G A       D ++LDL LPK+DG  
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
           V Q+ R + +  D+PVL+LTA   + ++++G  SGADDYL KPF + E+ AR++AL+RR 
Sbjct: 62  VLQQWRSNHQ--DVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR- 118

Query: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWF-GKSIKLTHLEFELLHCLLQRHGQTVSPSD 181
               +   H  ++ Q  + L  +   ++W   + I LT  E++LL   +    + +S S 
Sbjct: 119 ----RYGYHHSVIEQAGVKL-DQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSS 173

Query: 182 ILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229
           I  ++  ++ +     + VHI +LR KL       +FI+TV+G GY L
Sbjct: 174 IEEKLSSWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  118 bits (295), Expect = 2e-29
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 12/226 (5%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           I +++ +P +  L+S +L+ +GY VQQ     + +       P L ++D  L   DG  +
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTD 123
           C+ L +  ++    + +L+A    +D + G  +GADDYLTKPF ++E LAR+  L+RR  
Sbjct: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122

Query: 124 RIPQAAKHSEILNQGPL--TLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSD 181
            +        +L+ G L   LV  R E  + G  + LT  EF LL+ L Q  G  +S ++
Sbjct: 123 TVAAPL----LLDYGVLKIDLVQRRVE--YQGNFVDLTPQEFSLLYVLTQAEGSALSRTE 176

Query: 182 ILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
           +LR  W  E  D+  TI  H+  LR K+E +PR+P  I+TV   GY
Sbjct: 177 LLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGY 221


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  118 bits (295), Expect = 2e-29
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           +ILI++D+ AI +++++ L    YDV +A D  K     ++  P LI+LD MLP   G  
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASD-FKTAINKIKENPKLILLDWMLPGRSGIQ 62

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
             Q +++ E  A IP++MLTA    +D I   ++GADDY+TKPF  + +LAR+ A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182
                  + S+ +    L++        +  + I L+  EF+LLH  ++   +  S   +
Sbjct: 123 -----YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQL 177

Query: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
           L  +W  + + +  T+  +IR LR  L P  +   +I+TV G+GY
Sbjct: 178 LNRIWHNDLEVEYRTVDSYIRRLRRNLAPF-QCEHYIQTVRGSGY 221


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  115 bits (288), Expect = 1e-28
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 15/230 (6%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQ--LQPDLIMLDLMLPKVDG 60
           R+L+++D+P +   +   L    Y V    DG    +   Q  +   L + D M+P + G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
             +CQ+LR     + +P+LMLTA  QI D+++G D+GADDYL KPF + E+LAR+R+L R
Sbjct: 62  LELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQR 119

Query: 121 RTDRI-PQAAKHSE-ILNQGPLTLV-PERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTV 177
           R+  + PQ  +  +  L+ G   +V PE+         I LT  EF+LL   ++   Q +
Sbjct: 120 RSPELQPQQLQVGQWWLDYGTFAVVTPEQ-------ARITLTAKEFQLLEYFMKHPQQIL 172

Query: 178 SPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
           S   I  ++W    +     +   +R LR KLE        I+TVYG GY
Sbjct: 173 SSEQIKNQLWALSAESTSNVVAAQVRLLRRKLE-EYSHGNLIETVYGLGY 221


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  109 bits (272), Expect = 9e-27
 Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 18/240 (7%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPD--LIMLDLMLPKVDG 60
           RIL+++D+  +   +   L    Y V    DG +          +  L ++D +LP + G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
             +CQ+LR    +  +PVLMLTALG+ +++++G D+GADDYLTKPF + E+LAR+RAL R
Sbjct: 62  LELCQKLRTQGNS--LPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119

Query: 121 RTDRIPQAAKHSEILNQGPLTLVP-ERFEAIWFG-------KSIKLTHLEFELLHCLLQR 172
           R+ +        +IL  G  +L P     ++          + I LT  EF++   L+Q 
Sbjct: 120 RSPQF-----QPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQN 174

Query: 173 HGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELS 232
             + +S S I +++W  + +     +   +R +R KL      P  IKTV G GY   LS
Sbjct: 175 PERIISGSKIRQQLWDLDEEPMSNVVAAQMRLIRRKL-AQQNCPCPIKTVPGQGYRFTLS 233


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  105 bits (263), Expect = 1e-25
 Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 26/239 (10%)

Query: 2   PRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGF 61
           P+IL+++D+    + +    E  GYDV +A +G++   +      +L+++D+ LP  +G 
Sbjct: 4   PKILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGL 63

Query: 62  TVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121
            + + LR +     +P++ LT      DKI G + GADDYLTKPF+  E+  R R LL R
Sbjct: 64  LLARELREE---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120

Query: 122 TDRIPQAAKHSEI-------------LNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHC 168
              +P   K +               LN   L + PE       G+  KL   EF  +  
Sbjct: 121 A--MPHQEKENTFGREFYRFNGWKLDLNSHSL-ITPE-------GQEFKLPRSEFRAMLH 170

Query: 169 LLQRHGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGY 227
             +  G+  +  ++L+++ G E      T+ V IR +R   E +P  P  I T++G GY
Sbjct: 171 FCENPGKLQTREELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGY 229


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  102 bits (254), Expect = 1e-24
 Identities = 54/116 (46%), Positives = 71/116 (61%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           IL++DD      ++S  LE  GY       G +      Q QPDLI+LDLM+P +DG  V
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119
           C RL++D +T DIPV+ LTA  + QD +Q F  GA DY+TKPF   E+LARV+  L
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135



 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 27/109 (24%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           IL+ +D+     +  + L+  GY V    +G +  +   +   D++++D+ +P++DG T 
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 64  CQRLRRDERTADIP-VLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEM 111
            + +RR +  ++ P ++ +TA     D+ +   SG +DY++KP  +E +
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEAL 850


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score =  101 bits (251), Expect = 3e-24
 Identities = 49/128 (38%), Positives = 83/128 (64%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           +L++DDDP +  LV   LE  GY V  A +G +   L     PD+I+ D+M+P++DG+  
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTD 123
            +++R++   + IPV+ L+A GQ  ++++G + GAD Y+ KPF+ EE+ A+V++ LR+ D
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQAD 129

Query: 124 RIPQAAKH 131
           R+ Q   H
Sbjct: 130 RLLQHNNH 137


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 96.3 bits (238), Expect = 8e-23
 Identities = 44/112 (39%), Positives = 71/112 (63%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           IL++DD P    L+S  L   GY V+    G          +PDLI+LD+ +P +DG+ V
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115
           C+ ++++E   DIP++ ++ALG   DK++ F+ G  DY+TKPF +EE++AR+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 95.5 bits (236), Expect = 1e-22
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 13/163 (7%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQAL--AVQLQPDLIMLDLMLPKV 58
           M  IL+++D+  I +L+   L +  Y + +A +G     L  ++++ PDLI+ D+M+P++
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 59  DGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRAL 118
           DG  +   L+++ +TA IP + LTALG +QD  +G +SGADDYL KPF  E++L  V + 
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120

Query: 119 LRRTDRIP---QAAKHSEILNQ-------GPLTLVPERFEAIW 151
           L++  ++    Q +  S +  +       G  TL P+  E IW
Sbjct: 121 LQKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAE-IW 162


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 93.2 bits (230), Expect = 7e-22
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 4   ILIIDDDPAISDLVSINLEMAG-YDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           +L++DD+P + + V   LE +G + V  A +  +         P L++ D+M+P+VDG+ 
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122
             Q+LR D R   +PV+ LTA G   D+IQG+ +G D +L+KPFD +E+ A VR LL R 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177

Query: 123 DRIPQAAKHSEILNQ 137
                A   S  L +
Sbjct: 178 QASSDAGSESAKLQE 192


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 90.5 bits (223), Expect = 4e-21
 Identities = 39/120 (32%), Positives = 76/120 (63%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           M  +L+++D  +  +++S  L+  G+ V  A DG++         PDL++LD+++P+++G
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
           + VC+R++ D +T ++PV+M ++ G+  D+  G   GAD Y+ KPF   E++  ++ LLR
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 86.3 bits (212), Expect = 8e-20
 Identities = 40/119 (33%), Positives = 73/119 (61%)

Query: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           M ++L+++D+    D++S  L   GY+V  AVDG +   +A+   P LI++D+ LP +DG
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119
           +T  ++++     A IP++ LTA     D+ +   +G DDY TKP +++ +L ++ AL+
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 37/117 (31%), Positives = 67/117 (57%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           +IL++DDD  +   + + L+  G+ V+ A +G +      +++P++++LD ++P +DGF 
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119
            CQ L +  +     VLM+T L       + F++GA DY+TKP     +  RV+ LL
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 63.5 bits (153), Expect = 6e-13
 Identities = 33/111 (29%), Positives = 62/111 (55%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           ++L++DD P    L+   L   G+ VQ+A +G    AL     P +I++D+ +P +DG +
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLA 113
             Q+++   +     ++ LTA     ++ +   +G DD+L+KPF  EE++A
Sbjct: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 60.5 bits (145), Expect = 5e-12
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 12/222 (5%)

Query: 3   RILIIDDDPAISDLV--SINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           RI +I+D+  I   +  ++ +E +   V +A +G  G  +  Q +PD++++D+ LP ++G
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
             V Q+L++        V++LT   Q +  +  F +GAD Y  K    E ++  ++A   
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATHG 124

Query: 121 RTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPS 180
               I  A     +L   P     E         S  LT  E E+L  ++       S +
Sbjct: 125 GFAWIDPAIARI-VLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIV----DGCSNA 179

Query: 181 DILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTV 222
           DI  +++       + T++ H+R++  KL  N R    ++ +
Sbjct: 180 DIAEKLY-----ITVGTVKTHVRNILNKLCANDRTQAAVRAI 216


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 56.2 bits (134), Expect = 9e-11
 Identities = 28/102 (27%), Positives = 55/102 (53%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           IL+++D+    +     L   G  VQ A +G +   L      D I++D+ +P ++G+  
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKP 105
            + +R+ E   ++P++ +TA     D+ +  D+G +D+LTKP
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 28/109 (25%), Positives = 60/109 (55%)

Query: 3    RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
            RIL+++D+    ++ +  L   G++V  A +G+            L+++D+ +P++DG  
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 63   VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEM 111
                +R++ R A +P++ +TA     D+ +   +G +D+L KP + EE+
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 40.0 bits (92), Expect = 7e-06
 Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 5/145 (3%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPD-----LIMLDLMLPK 57
           R+L++DD+     ++   LE   + V+    G +      +   +     ++ +D  +P 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 58  VDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRA 117
           +DG  V +RL+         + ++TA G+ +  ++    G DD L KP     +   +  
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891

Query: 118 LLRRTDRIPQAAKHSEILNQGPLTL 142
           +L     + Q  + S  +    L L
Sbjct: 892 VLGDPTALAQEMRQSSGIGAEDLAL 916


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 30/104 (28%), Positives = 56/104 (53%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
           +IL++DD      L+   L   G+++++A +G +  AL    +P LI +D+ +P +DG+ 
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPF 106
             + ++   +     V+ LTA    ++K     +G DD+L KPF
Sbjct: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 33/218 (15%)

Query: 3   RILIIDDDP----AISDLVSI--NLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLP 56
           ++L+IDD P     I  LV +  N E+   DV    +GI   ++A+Q  PD+I+LDL + 
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVA-DVSSGTEGI---SVALQTSPDVIILDLNMK 61

Query: 57  KVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVR 116
            + G    + LR +    D  +L+LT      D     D+GAD YL K  + + +L +++
Sbjct: 62  GLSGLDTLKGLRAEG--VDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIK 119

Query: 117 ALLRRTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQT 176
            +          A+   IL+     L+ ER           LT  E  +L  +       
Sbjct: 120 RI----------AQGEVILSDSIKNLLLERTHED--NPLDSLTDREMGVLRQI----ATG 163

Query: 177 VSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPR 214
           +S   I  +++  E     ET++VHIR+L  KL  + R
Sbjct: 164 LSNKQIAAQLFISE-----ETVKVHIRNLLRKLNVHSR 196


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 3   RILIIDDDPAISDLVS--INLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60
           R+LI DD       ++  IN +     + QA +G +  AL  + QPD+ ++DL +P+V+G
Sbjct: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120
                 +    + A I  ++LT     +D  +G  +GA  YL K  + +E+L  +R + R
Sbjct: 68  VAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125

Query: 121 RTDRIP 126
               IP
Sbjct: 126 GQKYIP 131


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 3   RILIIDDDPAISDLVSINLEMAGYDVQQ-AVDGIKGQALAVQLQPDLIMLDLMLP-KVDG 60
           +ILI++D+  ++  ++  L+  GY++   A DG        +  PDL++LD+ +  ++DG
Sbjct: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63

Query: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115
             V +R++       IP++ LTA    +   +   +    Y+ KPF  E++L+ V
Sbjct: 64  IEVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 12/121 (9%)

Query: 3   RILIIDDDPAISDLVSINLEMA-----GYDVQQAVD-GIKGQALAVQLQPDLIMLDLMLP 56
           +ILI++DDP    L+ + LE A      +++   VD G      A  L PDLI++D+ LP
Sbjct: 18  KILIVEDDP----LMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLP 73

Query: 57  KVDGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVR 116
            +DG    ++++  + +  I +++LT+     + I    SGAD Y  K   +E ++  + 
Sbjct: 74  GLDGIEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIA 131

Query: 117 A 117
           A
Sbjct: 132 A 132


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 3    RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
            +IL+ +D+     +    L   GY V  A +G +      +   DL+++D+ +P +DG T
Sbjct: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250

Query: 63   VCQRLRRDERTADIP-VLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121
             C+ +R+       P ++ +TA     D+ +  D+G D Y++KP  + ++    R +L+ 
Sbjct: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL----RKVLQD 1306

Query: 122  TDRI---PQAAKHSEILNQGPLTLVPER 146
            T  +   PQA +    L    +T+V E+
Sbjct: 1307 TSALITSPQAREDIVTLGD-KITVVEEQ 1333


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 46.2 bits (108), Expect = 1e-07
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63
           +++I+ D  I+ L+   L +A Y V   +D          LQP LI++D     VD   V
Sbjct: 632 VIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDF--VDVTEV 689

Query: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRAL 118
            + +++  R + + V +L+      +       G DDYL KP   E +L RV+++
Sbjct: 690 TRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRVQSI 744


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.322    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,954
Number of Sequences: 78
Number of extensions: 1021
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 33
Number of HSP's better than  0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 39
length of query: 241
length of database: 48,235
effective HSP length: 60
effective length of query: 181
effective length of database: 43,555
effective search space:  7883455
effective search space used:  7883455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001509 slr0210 
         (417 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001509 slr0210                                            817   0.0  
SYNE-PCC-01-000295 sll0474                                            156   1e-40
SYNE-PCC-01-001280 sll1871                                            140   7e-36
SYNE-PCC-01-002879 slr2104                                            135   2e-34
SYNE-PCC-01-000800 sll1228                                            132   2e-33
SYNE-PCC-01-000891 sll1353                                            130   8e-33
SYNE-PCC-01-002873 slr2098                                            130   1e-32
SYNE-PCC-01-001294 sll1888                                            129   2e-32
SYNE-PCC-01-002617 slr1759                                            127   5e-32
SYNE-PCC-01-002778 slr1969                                            121   5e-30
SYNE-PCC-01-001517 slr0222                                            120   1e-29
SYNE-PCC-01-001306 sll1905                                            113   1e-27
SYNE-PCC-01-001132 sll1672                                            106   1e-25
SYNE-PCC-01-000985 sll1475                                            101   5e-24
SYNE-PCC-01-001690 slr0473                                             86   2e-19

>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  817 bits (2110), Expect = 0.0
 Identities = 405/417 (97%), Positives = 405/417 (97%)

Query: 1   MGSNFPNRKSLQTAGDGFEQSIARLIASMIPVQEIYYWRLGASXXXXXXXXXXXXLSMAF 60
           MGSNFPNRKSLQTAGDGFEQSIARLIASMIPVQEIYYWRLGAS            LSMAF
Sbjct: 1   MGSNFPNRKSLQTAGDGFEQSIARLIASMIPVQEIYYWRLGASPETPEIIEIIPTLSMAF 60

Query: 61  QTGHSPWPMAEKCLKFIGDRQGDLQRGKSLLTDLKQHWQEITSASFDSGAVQANTNDDLP 120
           QTGHSPWPMAEKCLKFIGDRQGDLQRGKSLLTDLKQHWQEITSASFDSGAVQANTNDDLP
Sbjct: 61  QTGHSPWPMAEKCLKFIGDRQGDLQRGKSLLTDLKQHWQEITSASFDSGAVQANTNDDLP 120

Query: 121 YFFLPVFQQNQYVGGICLVWPHSQWRLEQYLFLQEVGNVFTYQYHGESETISPQKSFNGG 180
           YFFLPVFQQNQYVGGICLVWPHSQWRLEQYLFLQEVGNVFTYQYHGESETISPQKSFNGG
Sbjct: 121 YFFLPVFQQNQYVGGICLVWPHSQWRLEQYLFLQEVGNVFTYQYHGESETISPQKSFNGG 180

Query: 181 DRHTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSL 240
           DRHTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSL
Sbjct: 181 DRHTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSL 240

Query: 241 VNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVD 300
           VNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVD
Sbjct: 241 VNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVD 300

Query: 301 QRRWKQILINLLSNGVKFTPKGSVTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQ 360
           QRRWKQILINLLSNGVKFTPKGSVTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQ
Sbjct: 301 QRRWKQILINLLSNGVKFTPKGSVTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQ 360

Query: 361 ISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTSVKNYQT 417
           ISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTSVKNYQT
Sbjct: 361 ISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTSVKNYQT 417


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  156 bits (395), Expect = 1e-40
 Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 11/229 (4%)

Query: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
           L+++ HE RTPL +I+G    L++++YG LN KQ Q ++   NS  HLLSL+ND LDLSK
Sbjct: 422 LANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSK 481

Query: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILI 309
           I+A   +L     +V  L    ++ VQ  A +KQ+ L+  I   +    VD+RR  Q+LI
Sbjct: 482 IEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLI 541

Query: 310 NLLSNGVKFTPKGSVTLA----VKATDK-------ALIFSVIDTGIGIDPEDQRDLFQPF 358
           NLL+N +KFTP+G   +     +K   K        L F+V DTGIGI+ +   ++F+PF
Sbjct: 542 NLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPF 601

Query: 359 KQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407
            QI    +    GTGLGL+L +++ +LHGG + +TS    GS F   +P
Sbjct: 602 VQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  140 bits (353), Expect = 7e-36
 Identities = 88/229 (38%), Positives = 128/229 (55%), Gaps = 4/229 (1%)

Query: 183 HTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVN 242
           + + +I L+++ HE RTPL AIIG++ ML +E     + +    +   L S + LL+L+N
Sbjct: 435 NATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALIN 494

Query: 243 DFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQR 302
           D LD+SKI+A   EL+ E   +++L   ++  +    K     L + I    +  Y D  
Sbjct: 495 DLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLESEEVYGDLI 554

Query: 303 RWKQILINLLSNGVKFTPKGSVTLAV---KATDKA-LIFSVIDTGIGIDPEDQRDLFQPF 358
           + +Q ++NLLSN  KFT  G ++  V   K  +K  L F V DTGIG+  E    LFQPF
Sbjct: 555 KLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614

Query: 359 KQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407
            Q     +    GTGLGLA++R+  Q+ GGDI LTS  GVGS F+  LP
Sbjct: 615 TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  135 bits (341), Expect = 2e-34
 Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 9/228 (3%)

Query: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
           L+++ HE RTP+ AIIG + ++   L   L  +Q  Y+Q    + E LL ++N+ LD SK
Sbjct: 462 LANMSHEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKVQYAGELLLGIINNILDFSK 518

Query: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308
           ++A   EL  +  +VE++   + S++  +A+ K L LN  +D  +    V D+ R  QIL
Sbjct: 519 MEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQIL 578

Query: 309 INLLSNGVKFTPKGSVT-----LAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363
           INL +N VKFT +G +T     L  +     L FSV DTGIG+ P+ Q  LFQ F Q   
Sbjct: 579 INLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGET 638

Query: 364 PPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTS 411
             S    GTGLGLA+S+ L +L GGDI L S  G GS F   + L T+
Sbjct: 639 STSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTA 686


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  132 bits (332), Expect = 2e-33
 Identities = 105/302 (34%), Positives = 154/302 (50%), Gaps = 21/302 (6%)

Query: 124 LPVFQQNQYVGGICLVWPHSQ--WRLEQYLFLQEVGNVFTY-QYHGESETISPQKSFNGG 180
           +P+ +  Q +G I +V  H    W  E+    + VG      Q   ++ET   Q      
Sbjct: 98  VPMVKDAQVLGYISMVHLHDNYGWNPEELNLAKLVGQFLAIAQARHQAETTLTQAKEAAD 157

Query: 181 DRHTSMTINLSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLN-SAEHLLS 239
             + + T  L+ I HE RTPL AIIGF+++L  +    L P  H+     +N S EHLL 
Sbjct: 158 AANRAKTEFLASISHELRTPLNAIIGFSQLLHRD--PSLAP--HRPTLDIINRSGEHLLE 213

Query: 240 LVNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGV-DFCY 298
           L+ND L++SKI+A    L  + +    L   + ++ Q +A+EKQL L +     V ++  
Sbjct: 214 LINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIK 273

Query: 299 VDQRRWKQILINLLSNGVKFTPKGSVTLAVKA-----TDKA------LIFSVIDTGIGID 347
            D  + +Q+LINLL+N +KFT +G VTL VK      TD+       L F V DTG GI 
Sbjct: 274 TDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIA 333

Query: 348 PEDQRDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407
             +  +LF PF Q        + G GLGL +S++  QL GG IQ+ S    GS F   +P
Sbjct: 334 AHEMDELFVPFAQTETGLKSCQ-GNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIP 392

Query: 408 LK 409
           ++
Sbjct: 393 VQ 394


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  130 bits (327), Expect = 8e-33
 Identities = 86/235 (36%), Positives = 127/235 (54%), Gaps = 12/235 (5%)

Query: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
           L++I HE RTP+ AI+GF  +L  +       K+  Y+    +S++ LL+L++D LD+SK
Sbjct: 604 LANISHEIRTPMNAILGFCDLLLQKDLSLSQTKK--YLNAIGSSSKILLALIDDILDISK 661

Query: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFC-YVDQRRWKQIL 308
           I+A    +  E V +  +   +  +   KA+ K L L + ID+ ++   Y D  R +QIL
Sbjct: 662 IEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQIL 721

Query: 309 INLLSNGVKFTPKGSVTLAV---------KATDKALIFSVIDTGIGIDPEDQRDLFQPFK 359
            NL+ N +KFT +G V + +         + T  +L   V DTGIGI PEDQ  +F  F 
Sbjct: 722 FNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFT 781

Query: 360 QISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTSVKN 414
           Q     +    GTGLGL ++RRL  L GG+I L+S  G GS F    P    V+N
Sbjct: 782 QSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFPAVRLVEN 836


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  130 bits (326), Expect = 1e-32
 Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
           L+++ HE RTP+ A+IG   +    L   L P+Q +Y+     S +HLL ++ND LD SK
Sbjct: 531 LANMSHEIRTPMNAVIGMTHLA---LKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSK 587

Query: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308
           I+A    +      ++ +   V +++  KA  K L L   ID  +   ++ D  R  QIL
Sbjct: 588 IEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQIL 647

Query: 309 INLLSNGVKFTPKGSVTLAVKAT-----DKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363
           IN  +N VKFT +G +T+ V+       D  L  +V DTGIGI PE   +LF  F+Q   
Sbjct: 648 INYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADS 707

Query: 364 PPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTS 411
             +    GTGLGLA+ +R+A+L GG++ + S  G GS F A + L+ S
Sbjct: 708 STTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKS 755


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  129 bits (324), Expect = 2e-32
 Identities = 96/305 (31%), Positives = 153/305 (50%), Gaps = 35/305 (11%)

Query: 129 QNQYVGGICLVWPHSQWRLEQYLFLQEVGNVFTYQYHGESETISPQKSFNGGDRHTSMTI 188
           Q + +GG+ +     Q +   YL LQ+VG      +H E+E +  + +   G      T+
Sbjct: 118 QGEDLGGLWIFPTLYQDQANGYLCLQQVGPA-PGPWHPETEALLQELAEQTGTAIAHATL 176

Query: 189 N--------------------LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQ 228
                                L+   HE RTPL  IIGF R++ D++      ++H++V+
Sbjct: 177 YQELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADS-EAEKHEFVE 235

Query: 229 GTLNSAEHLLSLVNDFLDLSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNL 288
               SA  LL+L+ND LDL+KI+A    +  E V   ++  A  +    +A+ K L+ NL
Sbjct: 236 EAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNL 295

Query: 289 TI-DDGVDFCYVDQRRWKQILINLLSNGVKFTPKGSVTLAVKATDKALIF---------- 337
           T  + G    Y +QR   Q+++N++ N +KFT +G +T+AV+   + +++          
Sbjct: 296 TAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLK 355

Query: 338 -SVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTST- 395
            SV DTGIG+  E Q  LF+ F QI    S A  GTGLGL +S++L +  GG +   S  
Sbjct: 356 VSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMG 415

Query: 396 PGVGS 400
            G+GS
Sbjct: 416 EGLGS 420


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  127 bits (320), Expect = 5e-32
 Identities = 87/231 (37%), Positives = 118/231 (51%), Gaps = 21/231 (9%)

Query: 190  LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
            L+ + HE RTP+  +IG   +L   +   LN +Q  YVQ    S E LL+++ND LD SK
Sbjct: 782  LAMMSHEIRTPMNGVIGMTELL---IMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSK 838

Query: 250  IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308
            I+A    L  +   +  L   V+ M    A+ K L L   ID       + DQ R +QIL
Sbjct: 839  IEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQIL 898

Query: 309  INLLSNGVKFTPKGSVTLAVKAT-----------------DKALIFSVIDTGIGIDPEDQ 351
             NL+ N +KFT KG V L VK                      + F++ DTGIGI  + Q
Sbjct: 899  SNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQ 958

Query: 352  RDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCF 402
              LF+ F Q+    +    GTGLGL +S+RL Q+ GG + +TS PGVGS F
Sbjct: 959  DRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNF 1009


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  121 bits (303), Expect = 5e-30
 Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 190 LSHIHHEFRTPLTAIIGF-ARMLR--DELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLD 246
           +++I HE RTPLT+IIG  A +LR  D        KQ  Y+     + + LL  +N  + 
Sbjct: 383 INNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQ 442

Query: 247 LSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLT--IDDGVDFCYVDQRRW 304
           LS++++    L  +  ++  L   VI  +   A ++Q+ L L   I+ G D    DQ R 
Sbjct: 443 LSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERL 502

Query: 305 KQILINLLSNGVKFTP-KGSVTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363
            QIL  LL+N +KFTP +G+V L +       IF V DTGIGI+ +    LF+ FK    
Sbjct: 503 DQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGD 562

Query: 364 P-PSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407
              SF E G G+GLAL+++L +LHGG I++ S+PG G+ F+ ++P
Sbjct: 563 SYTSFYETG-GVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIP 606


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  120 bits (300), Expect = 1e-29
 Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 5/218 (2%)

Query: 193  IHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDA 252
            + HEFRTPLT+IIGF  +L          K+ QY+    NS++ L  L++D L +S+ DA
Sbjct: 947  VSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDA 1006

Query: 253  RCEELFYEQVAVEDLCLAVISMVQT-KAKEKQLALNLTIDDGVDFCYVDQRRWKQILINL 311
               E+    + + +L   +I         E    LN  +    +   VD R  + IL N+
Sbjct: 1007 NKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPD-EHSLVDVRLLRHILENI 1065

Query: 312  LSNGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEK 370
            LSN +K++  GS +TL +   ++ L+F V D GIGI  +DQ  LF+ F + S+       
Sbjct: 1066 LSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDI--P 1123

Query: 371  GTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPL 408
            GTGLGL++ +R  +  GG I++ S PG G+     LPL
Sbjct: 1124 GTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  113 bits (283), Expect = 1e-27
 Identities = 81/209 (38%), Positives = 107/209 (51%), Gaps = 11/209 (5%)

Query: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249
           L+ + HE RTP+ AIIG   +L D     L  +Q  + Q   NS E LL+L+ND LD SK
Sbjct: 325 LATMSHEIRTPMNAIIGMTGLLLDT---DLTTQQKYFAQTIRNSGETLLTLINDILDFSK 381

Query: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVD-FCYVDQRRWKQIL 308
           I+A   +L      +       + +V   A++K L L       +      D  R +QIL
Sbjct: 382 IEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQIL 441

Query: 309 INLLSNGVKFTPKGSVTLAVKATDK-------ALIFSVIDTGIGIDPEDQRDLFQPFKQI 361
           +NLLSN VKFT  G V + V+  D         + F+V DTGIGI P  Q+ LFQ F Q 
Sbjct: 442 VNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQG 501

Query: 362 SHPPSFAEKGTGLGLALSRRLAQLHGGDI 390
           +   +    GTGLGLA+  RL  L GG I
Sbjct: 502 NSSITRRFGGTGLGLAICVRLTALMGGTI 530


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  106 bits (265), Expect = 1e-25
 Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 24/234 (10%)

Query: 190 LSHIHHEFRTPLTAIIGFAR-MLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLS 248
           ++++ HE R+PL AIIGF++ MLR +    L  +Q++       S E+LL+L+N+ LD S
Sbjct: 369 VANMSHELRSPLNAIIGFSQLMLRTK---NLPMEQYENAGIIQRSGEYLLNLINNILDFS 425

Query: 249 KIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVD-FCYVDQRRWKQI 307
           KI+A    L      +  L   +  M+  KA  + + L    D  +  + Y D+ + +QI
Sbjct: 426 KIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQI 485

Query: 308 LINLLSNGVKFTPKGSVTLAVKATDKA------------------LIFSVIDTGIGIDPE 349
           L+NLLSN +KFT +G V L     +                    L F++ DTG GI   
Sbjct: 486 LLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEV 545

Query: 350 DQRDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFS 403
           +   LF+ F Q     + A++GTGLGLA++R+  +L GGDI ++S    G+ FS
Sbjct: 546 ELSHLFEAFSQTESGRN-AQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFS 598


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score =  101 bits (251), Expect = 5e-24
 Identities = 66/214 (30%), Positives = 113/214 (52%), Gaps = 5/214 (2%)

Query: 195 HEFRTPLTAIIGFARMLRDELYGKLNP-KQHQYVQGTLNSAEHLLSLVNDFLDLSKIDAR 253
           HEFRTPL+  +  A++L +     L+P K+ + +    NS ++++ L++D L +++ +A 
Sbjct: 78  HEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAG 137

Query: 254 CEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILINLLS 313
             E     + ++ L    I  +Q    + Q   +           VD+R  + IL NLLS
Sbjct: 138 KLEFNPNWLDLKLLFQQFIEEIQLSVSD-QYYFDFICSAQDTKALVDERLVRSILSNLLS 196

Query: 314 NGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEKGT 372
           N +K++P G  + +A+    + +IF V D GIGI PEDQ+ +F+PF +  +  +    GT
Sbjct: 197 NAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPFHRGKNVRNIT--GT 254

Query: 373 GLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAIL 406
           GLGL ++++   LH G I L S    G+  +  L
Sbjct: 255 GLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 288


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 85.9 bits (211), Expect = 2e-19
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 11/217 (5%)

Query: 195 HEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDARC 254
           H+ + PL  +  + ++L       L+     ++   +     + +L++D L  +K+D + 
Sbjct: 538 HDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQY 597

Query: 255 EELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDG-VDFCYVDQRRWKQILINLLS 313
            +L +  V        V+       K++       I+ G +     DQ +  Q+  NL++
Sbjct: 598 AQLTFTDVQ------EVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIA 651

Query: 314 NGVKFTPKGSVTLAV--KATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEKG 371
           NG+KF    S  + +     + A +F+V D GIGIDP+    +F  F+++     +  KG
Sbjct: 652 NGIKFAGDKSPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEY--KG 709

Query: 372 TGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPL 408
           TG+GLA+ +++ + H G I L S PG GS F   +P+
Sbjct: 710 TGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSIPI 746


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,164
Number of Sequences: 78
Number of extensions: 1546
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 15
Number of HSP's better than  0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 15
length of query: 417
length of database: 48,235
effective HSP length: 65
effective length of query: 352
effective length of database: 43,165
effective search space: 15194080
effective search space used: 15194080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001517 slr0222 
         (1178 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001517 slr0222                                           2247   0.0  
SYNE-PCC-01-000985 sll1475                                            170   2e-44
SYNE-PCC-01-002873 slr2098                                            138   9e-35
SYNE-PCC-01-002617 slr1759                                            127   3e-31
SYNE-PCC-01-001280 sll1871                                            122   8e-30
SYNE-PCC-01-002778 slr1969                                            121   1e-29
SYNE-PCC-01-000295 sll0474                                            112   7e-27
SYNE-PCC-01-000891 sll1353                                            108   1e-25
SYNE-PCC-01-001509 slr0210                                            107   3e-25
SYNE-PCC-01-001306 sll1905                                             99   1e-22
SYNE-PCC-01-002879 slr2104                                             97   4e-22
SYNE-PCC-01-001132 sll1672                                             93   4e-21
SYNE-PCC-01-000800 sll1228                                             92   7e-21
SYNE-PCC-01-002220 slr1212                                             92   1e-20
SYNE-PCC-01-001294 sll1888                                             91   3e-20
SYNE-PCC-01-001690 slr0473                                             87   3e-19
SYNE-PCC-01-000983 sll1473                                             62   1e-11
SYNE-PCC-01-001133 sll1673                                             51   2e-08
SYNE-PCC-01-002672 slr1837                                             47   4e-07
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   43   6e-06

>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 2247 bits (5822), Expect = 0.0
 Identities = 1147/1178 (97%), Positives = 1147/1178 (97%)

Query: 1    MPIIPSPKVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEM 60
            MPIIPSPKVLLVDDQRENLVALSRALDSLPVEIITANSGQEAI      EFALMILAQEM
Sbjct: 1    MPIIPSPKVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEM 60

Query: 61   SELDGLNTAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVK 120
            SELDGLNTAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVK
Sbjct: 61   SELDGLNTAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVK 120

Query: 121  AKLYLQLFQQKQTLQYYNNYLESSVKSVHFDVKNNHSEQLSEIILANISDTVFVTDLSGK 180
            AKLYLQLFQQKQTLQYYNNYLESSVKSVHFDVKNNHSEQLSEIILANISDTVFVTDLSGK
Sbjct: 121  AKLYLQLFQQKQTLQYYNNYLESSVKSVHFDVKNNHSEQLSEIILANISDTVFVTDLSGK 180

Query: 181  FTFICSNIDNIFGYSLAEVNAMGTVETLLGDFRFNEYELKEKGELKNLRHDVQDKQGKIH 240
            FTFICSNIDNIFGYSLAEVNAMGTVETLLGDFRFNEYELKEKGELKNLRHDVQDKQGKIH
Sbjct: 181  FTFICSNIDNIFGYSLAEVNAMGTVETLLGDFRFNEYELKEKGELKNLRHDVQDKQGKIH 240

Query: 241  YLLINLKKVAINGGIYLYSCRDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYI 300
            YLLINLKKVAINGGIYLYSCRDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYI
Sbjct: 241  YLLINLKKVAINGGIYLYSCRDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYI 300

Query: 301  CYANAQAVKLLNCTLEELVGTIGSPLEDTEFSLLVDDGTIYTVDVSVTEITWYGQTAKLV 360
            CYANAQAVKLLNCTLEELVGTIGSPLEDTEFSLLVDDGTIYTVDVSVTEITWYGQTAKLV
Sbjct: 301  CYANAQAVKLLNCTLEELVGTIGSPLEDTEFSLLVDDGTIYTVDVSVTEITWYGQTAKLV 360

Query: 361  SLRDISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLGLTDLEG 420
            SLRDISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLGLTDLEG
Sbjct: 361  SLRDISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLGLTDLEG 420

Query: 421  RDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTDQLLWAYINAYPE 480
            RDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTDQLLWAYINAYPE
Sbjct: 421  RDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTDQLLWAYINAYPE 480

Query: 481  FYNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERTXXXXXXXXXXXXXIIEKE 540
            FYNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERT             IIEKE
Sbjct: 481  FYNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERTSELESSNSQLLQEIIEKE 540

Query: 541  QVSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLR 600
            QVSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLR
Sbjct: 541  QVSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLR 600

Query: 601  LLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVH 660
            LLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVH
Sbjct: 601  LLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVH 660

Query: 661  DITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQE 720
            DITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQE
Sbjct: 661  DITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQE 720

Query: 721  EINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMVKEEWQIIRRDGALRTVEISTALITS 780
            EINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMVKEEWQIIRRDGALRTVEISTALITS
Sbjct: 721  EINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMVKEEWQIIRRDGALRTVEISTALITS 780

Query: 781  NNQTNILAVIQDITDQKRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFES 840
            NNQTNILAVIQDITDQKRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFES
Sbjct: 781  NNQTNILAVIQDITDQKRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFES 840

Query: 841  LTGYTPDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQIWAQTVEFLV 900
            LTGYTPDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQIWAQTVEFLV
Sbjct: 841  LTGYTPDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQIWAQTVEFLV 900

Query: 901  DDLSDTARVVVFGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIG 960
            DDLSDTARVVVFGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIG
Sbjct: 901  DDLSDTARVVVFGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIG 960

Query: 961  FGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRN 1020
            FGELLSKYFDRLSTEKK            RLKQLIDDVLSISRYDANKIEIELGNINLRN
Sbjct: 961  FGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRN 1020

Query: 1021 LANDLIENFSCGLGSEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGSTIT 1080
            LANDLIENFSCGLGSEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGSTIT
Sbjct: 1021 LANDLIENFSCGLGSEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGSTIT 1080

Query: 1081 LDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQG 1140
            LDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQG
Sbjct: 1081 LDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQG 1140

Query: 1141 GTIEVISMPGKGTTMVIKLPLNPAPIIQIAQGETDRLS 1178
            GTIEVISMPGKGTTMVIKLPLNPAPIIQIAQGETDRLS
Sbjct: 1141 GTIEVISMPGKGTTMVIKLPLNPAPIIQIAQGETDRLS 1178


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score =  170 bits (431), Expect = 2e-44
 Identities = 101/280 (36%), Positives = 162/280 (57%), Gaps = 10/280 (3%)

Query: 885  KKDGTQIWAQTVEFLVDDLSDTARV----VVFGQDITDIKRAEIETLRSLVKERELNEAK 940
            +KDG++ W   VEF +  +++        +   +D+T+ +R E E   +L +E+EL+  K
Sbjct: 14   RKDGSEFW---VEFSLVPVANKTGFYTHWIAVQRDVTERRRTE-EVRLALEREKELSRLK 69

Query: 941  SQFVDIVSHEFRTPLTSIIGFGELL-SKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVL 999
            ++F  + SHEFRTPL++ +   +LL +     L  +K+             + QL+DD+L
Sbjct: 70   TRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDIL 129

Query: 1000 SISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLVDVRLLR 1059
             I+R +A K+E     ++L+ L    IE     +  ++ F+     + D  +LVD RL+R
Sbjct: 130  IINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYYFDFICSAQ-DTKALVDERLVR 188

Query: 1060 HILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNV 1119
             IL N+LSNAIKYS  G  I + +S D E ++F+V D+GIGI  +DQ+++FE FHR  NV
Sbjct: 189  SILSNLLSNAIKYSPGGGQIKIALSLDSEQIIFEVTDQGIGISPEDQKQIFEPFHRGKNV 248

Query: 1120 GDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKL 1159
             +I GTGLGL + K+ V+   G+I + S   +GTT+ I L
Sbjct: 249  RNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 288


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  138 bits (348), Expect = 9e-35
 Identities = 159/631 (25%), Positives = 283/631 (44%), Gaps = 61/631 (9%)

Query: 564  IILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFY---AQQRHFWRTLKRE 620
            +I + + F+ L   + + ++        +G S L + L T   +       HF      E
Sbjct: 162  VIAVMLAFVALLFRFHSAKIFHTTHGPALGSSALVMGLSTSGMHYTAMTATHFICRPWGE 221

Query: 621  QISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQRENYFRR 680
               Q  D++ V      I+V IS +++T     ++  ++ +I++Q   Q  L     + R
Sbjct: 222  FFIQGIDIQEVA-----IAVTISITLLT---GGVMLFVLREISIQNQQQKILVATESWYR 273

Query: 681  QLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQEE-----INQCGWYETLYSHG 735
            Q++E   EG+ V             + N  ++ + GYSQ E     I   G  E L    
Sbjct: 274  QIIEYAPEGIMVLDAQGNI-----ILANTSIEKLFGYSQTELIGQSIALLGLAELL---- 324

Query: 736  QPQEAVRVRMKAVALG--VDMVKEEWQII--RRDGALRTVEISTALITSNNQT--NILAV 789
              Q+++ +  +   +G    + +EE++I+  R DG+   +E+S   + S +Q   NI A 
Sbjct: 325  --QQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLSQREMNIFAS 382

Query: 790  IQDITDQKRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFESLT----GYT 845
            ++DI+ ++   Q I      L+ ++++ P+   +     +   + NP    L     G +
Sbjct: 383  VRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNGITQ--FANPHIGELVDLKVGDS 440

Query: 846  PDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQIWAQTVEFLVDDLSD 905
            P ++Y D        R++  E L Q      +  ++ M    G +I      FL  D   
Sbjct: 441  PQKIYVD-----LGDRQQMLEELTQF--GRSQSRVYKMYNPRG-EIRDILATFLATDYEG 492

Query: 906  TARVVVFGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELL 965
               ++ +  DIT IK AE E  R+     E +  K+ F+  +SHE RTP+ ++IG   L 
Sbjct: 493  QKGILGWLADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLA 552

Query: 966  SKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLAND- 1024
             K      T ++             L  +I+D+L  S+ +A K+ +E  + +L  + ++ 
Sbjct: 553  LK---TDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNV 609

Query: 1025 --LIENFSCGLGSEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGS---TI 1079
              LI   +   G E  F+++ +L    H + D   L  IL N  +NA+K++  G     +
Sbjct: 610  ATLISEKATNKGLELLFDIDRNL--PRHFIGDPLRLGQILINYANNAVKFTEQGDITIVV 667

Query: 1080 TLDISKDEEHLLF-QVRDEGIGIPLQDQEKLFEAFHRA--SNVGDIPGTGLGLSIVKRYV 1136
             L   +D++ +L+  V+D GIGI  +    LF +F +A  S   +  GTGLGL+I KR  
Sbjct: 668  RLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIA 727

Query: 1137 EFQGGTIEVISMPGKGTTMVIKLPLNPAPII 1167
            E  GG + V S  G+G+T   K+ L  + +I
Sbjct: 728  ELMGGEVGVESEYGQGSTFWAKVCLQKSNVI 758


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  127 bits (318), Expect = 3e-31
 Identities = 162/701 (23%), Positives = 290/701 (41%), Gaps = 96/701 (13%)

Query: 538  EKEQVSITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIG--HS 595
            +K +  +  T QE   +    D    + +   + ++  VN + VE+SGY +EELIG  H 
Sbjct: 318  QKVEEFLKSTLQELAVQKTALDEAAIVAITDTEGVITYVNDKFVEVSGYSREELIGNTHR 377

Query: 596  LLDLRLLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIV 655
            L+     +PEF+ Q   FW+T++  ++     +    K+G    VD +      +N +  
Sbjct: 378  LVSSGYHSPEFFQQ---FWQTIRAGKVWH-GQINNRAKAGNTYWVDSTVVPFLDDNGNPY 433

Query: 656  Q--CIVHDITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPF-----LQFTVWN 708
            Q   I  +IT  K  +  L+      R + +     L+V  + ++  F     L+F    
Sbjct: 434  QYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMTFVNQSWLEFRGAT 493

Query: 709  PMMKNITGYSQE-EINQCGWYETLYSHG---QPQEAVRVRMKAVA--------LGVDMVK 756
               ++  GY +    +  G Y  +YS     + +  +  R + V         +GV    
Sbjct: 494  LAEESGNGYLEGIHPDDKGHYLGVYSQAFGDRRRFELEYRYRRVDQQYRWIVNVGVPRYL 553

Query: 757  EEWQIIRRDGA-LRTVEISTALITSNNQTNILAVIQDITDQ-KRQLQI----------IQ 804
            E+ + +   G+ L   +   A      + N + +++ I+ + +R LQ           + 
Sbjct: 554  EDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVG 613

Query: 805  NNEATLRCIVENLPIFFGMRTINFSNWYYINPSFESL-TGYTPDEMYEDPLLWQ------ 857
            N  A  RC++ N      ++    +   Y+   F SL  G    E   DP + Q      
Sbjct: 614  NVFAVSRCLIHNYSEATTLQVPVVAE--YLGGQFTSLLAGEIAVEQAYDPTIIQGDRAMA 671

Query: 858  ---------KIHREEYAENLEQARPNLGEWT--------IFSMEKKDGTQIWAQTVEFLV 900
                       H + + +   Q +  L   T        I ++ + D  ++W      L+
Sbjct: 672  VVDLDQDLNSTHTKAFYQRF-QVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEIELL 730

Query: 901  DDLSDTARVVVFGQDITDIKRAEIETLRSLVKERE--------LNEAKSQFVDIVSHEFR 952
            + +++   + +    + + +R     L     E E         N AK +F+ ++SHE R
Sbjct: 731  EAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIR 790

Query: 953  TPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIE 1012
            TP+  +IG  ELL      L   ++             L  +I+D+L  S+ +A+K+ +E
Sbjct: 791  TPMNGVIGMTELLIMTDLNL---QQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLE 847

Query: 1013 LGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLV--DVRLLRHILENILSNAI 1070
                 LR L   ++E F     ++H  EL Y + P   + +  D   LR IL N++ NA+
Sbjct: 848  TQAFELRPLIETVLEMFGPIARAKH-LELTYGIDPQTPARILGDQVRLRQILSNLIGNAL 906

Query: 1071 KYSAPGSTIT----------------LDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFH 1114
            K++  G  +                 L++      + F +RD GIGIPL  Q++LF++F 
Sbjct: 907  KFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFS 966

Query: 1115 R--ASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGT 1153
            +  +S      GTGLGL I +R  +  GG + V S PG G+
Sbjct: 967  QVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGS 1007


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  122 bits (305), Expect = 8e-30
 Identities = 89/250 (35%), Positives = 134/250 (53%), Gaps = 15/250 (6%)

Query: 925  ETLRSLVKEREL--------NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEK 976
            E L + VK  EL        N  KS F+  +SHE RTPL +IIG+ E+L +  + L +E+
Sbjct: 415  EELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEE 474

Query: 977  KXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSE 1036
                          L  LI+D+L IS+ +A K+E+ L   NL+ L   +++  S  L + 
Sbjct: 475  LVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNN 534

Query: 1037 HN-FELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPG--STITLDISKDE-EHLLF 1092
            +N  E+   L+ +E    D+  LR  + N+LSNA K++  G  S I  +   DE + L F
Sbjct: 535  NNKLEVEISLESEE-VYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSF 593

Query: 1093 QVRDEGIGIPLQDQEKLFEAFHRA--SNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPG 1150
            QV+D GIG+  +   KLF+ F +A  S      GTGLGL+I +++ +  GG I + S  G
Sbjct: 594  QVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIG 653

Query: 1151 KGTTMVIKLP 1160
             G++  IKLP
Sbjct: 654  VGSSFTIKLP 663


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  121 bits (303), Expect = 1e-29
 Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 929  SLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDR---LSTEKKXXXXXXXX 985
            +L+  +  N  KSQF++ +SHE RTPLTSIIG    L ++FD    L   K+        
Sbjct: 368  TLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQ 427

Query: 986  XXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENF-SCGLGSEHNFELNYH 1044
                +L   I+ ++ +S+ ++ +  +   + +L  LA  +I +     +  + N EL+Y 
Sbjct: 428  ENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQ 487

Query: 1045 LKPDEHSL-VDVRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPL 1103
            +   +     D   L  IL  +L+NA+K++    T+ L I K+    +FQV D GIGI  
Sbjct: 488  INVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINE 547

Query: 1104 QDQEKLFEAFHRA--SNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161
            Q    LFEAF  A  S        G+GL++ K+ VE  GG IEV S PG+GT     +P 
Sbjct: 548  QQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQ 607

Query: 1162 NPAP 1165
               P
Sbjct: 608  QNFP 611


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  112 bits (280), Expect = 7e-27
 Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 24/349 (6%)

Query: 827  NFSNWYYINPSFESLTGYTPDEMYEDPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKK 886
            N   W       E   G     + + P+ WQ I      ++LE   P +   T   +E  
Sbjct: 311  NLITWLGFEQPLEPADGDFFIHLGDRPMFWQAIE-----QSLED--PTMELSTELRLEAA 363

Query: 887  DGTQIWAQTVEFLVDDLSDTARVVVFGQ--DITDIKRAEIETLRSLVKERELNEAKSQFV 944
            +G +I+   +   +      A V + G   DIT+IK+AE +   S     +  + K +F+
Sbjct: 364  NG-EIYHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFL 422

Query: 945  DIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRY 1004
              +SHE RTPL SI+G  E L          K+             L  LI+D+L +S+ 
Sbjct: 423  ANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSKI 482

Query: 1005 DANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPD-EHSLVDVRLLRHILE 1063
            +A +++++L   ++  L N  +  F      +    L+  + P+    LVD R L  +L 
Sbjct: 483  EAGRMDLDLNPTSVSALVNHSL-TFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLI 541

Query: 1064 NILSNAIKYSAPGSTITL--DISKDE--------EHLLFQVRDEGIGIPLQDQEKLFEAF 1113
            N+L+NAIK++  G  + +  D+ K++          L F V D GIGI       +FE F
Sbjct: 542  NLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPF 601

Query: 1114 HRASNVGD--IPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLP 1160
             +  +  +    GTGLGLS+VK+ VE  GG++ V S   +G+   I +P
Sbjct: 602  VQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGSRFKITIP 650


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  108 bits (269), Expect = 1e-25
 Identities = 83/259 (32%), Positives = 130/259 (50%), Gaps = 17/259 (6%)

Query: 915  DITDIKRAEIETLRSLVKEREL-NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLS 973
            +I + +R EI+ LR   +  EL N  KS+F+  +SHE RTP+ +I+GF +LL +    LS
Sbjct: 575  EIEERQRIEIK-LREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLS 633

Query: 974  TEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGL 1033
              KK             L  LIDD+L IS+ +A K+ I L  ++LR +  ++ + F    
Sbjct: 634  QTKKYLNAIGSSSKI--LLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKA 691

Query: 1034 GSEHNFELNYHLKPDEHSLV--DVRLLRHILENILSNAIKYSAPGST--------ITLDI 1083
             S+ +  L   +    +  +  D   LR IL N++ NA+K++  G          I +  
Sbjct: 692  ESK-SLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRS 750

Query: 1084 SKDEEHLLFQVRDEGIGIPLQDQEKLFEAF--HRASNVGDIPGTGLGLSIVKRYVEFQGG 1141
                  L  +V D GIGI  +DQ K+F+ F   +  +     GTGLGL+I +R     GG
Sbjct: 751  QGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGG 810

Query: 1142 TIEVISMPGKGTTMVIKLP 1160
             I + S  G+G+T ++  P
Sbjct: 811  EISLSSRLGEGSTFILHFP 829


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  107 bits (266), Expect = 3e-25
 Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 947  VSHEFRTPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDA 1006
            + HEFRTPLT+IIGF  +L          K+             L  L++D L +S+ DA
Sbjct: 193  IHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDA 252

Query: 1007 NKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPD-EHSLVDVRLLRHILENI 1065
               E+    + + +L   +I         E    LN  +    +   VD R  + IL N+
Sbjct: 253  RCEELFYEQVAVEDLCLAVISMVQTK-AKEKQLALNLTIDDGVDFCYVDQRRWKQILINL 311

Query: 1066 LSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDI--P 1123
            LSN +K++  GS +TL +   ++ L+F V D GIGI  +DQ  LF+ F + S+       
Sbjct: 312  LSNGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEK 370

Query: 1124 GTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161
            GTGLGL++ +R  +  GG I++ S PG G+     LPL
Sbjct: 371  GTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPL 408


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 98.6 bits (244), Expect = 1e-22
 Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 12/216 (5%)

Query: 937  NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLID 996
            N +KS+F+  +SHE RTP+ +IIG   LL    D   T ++             L  LI+
Sbjct: 318  NRSKSEFLATMSHEIRTPMNAIIGMTGLL---LDTDLTTQQKYFAQTIRNSGETLLTLIN 374

Query: 997  DVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLV-DV 1055
            D+L  S+ +A K+++E+   +L     + ++        +    +   L P   +L  DV
Sbjct: 375  DILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDV 434

Query: 1056 RLLRHILENILSNAIKYSAPG------STITLDISKDEEHLLFQVRDEGIGIPLQDQEKL 1109
              LR IL N+LSNA+K++  G        +  D +K E  + F V+D GIGI    Q+ L
Sbjct: 435  TRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQAL 494

Query: 1110 FEAFHR--ASNVGDIPGTGLGLSIVKRYVEFQGGTI 1143
            F+AF +  +S      GTGLGL+I  R     GGTI
Sbjct: 495  FQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTI 530



 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 9   VLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEMSELDGLNT 68
           +L+VDD +EN+  +S  L+          SG EA+      +  L++L   M  +DGL  
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 69  AKILRSFPLAEQTPIIFLA---RQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYL 125
              L+  P     P+IFL     ++ + +A A+    G VD++ +P +   L  + K +L
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAK----GAVDYVTKPFSPPELLARVKTHL 135

Query: 126 QLFQQKQTLQYYNNYLESSVKSVHFDVKNNHSEQLSEIILANISDTVFVTDLSGKFTFIC 185
           +L Q +  L  ++  LE +  +   +     S +L  I++ N+   V +TD  G    + 
Sbjct: 136 ELKQTRDNL--HHTLLEQARTA---EALACTSTRLG-ILVQNMQAGVLMTDAQGTIVVVN 189

Query: 186 SNIDNIF 192
                +F
Sbjct: 190 PEFARLF 196


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 96.7 bits (239), Expect = 4e-22
 Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 39/285 (13%)

Query: 914  QDITDIKRAEI------ETLRSLVKERE-------------------LNEAKSQFVDIVS 948
            QD+T+++ A+I      E L   ++ER                      +AKS+F+  +S
Sbjct: 407  QDVTELQEAQISLEHLNEKLEQRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMS 466

Query: 949  HEFRTPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANK 1008
            HE RTP+ +IIG  EL+        T ++             L  +I+++L  S+ +A K
Sbjct: 467  HEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGK 523

Query: 1009 IEIELGNINLRNLANDLIENFSCGLGSE-HNFELNYHLKPD-EHSLVDVRL-LRHILENI 1065
            +E+E    ++  +  +L  +   G+ +E     LN+HL P     LV  RL L  IL N+
Sbjct: 524  LELEQKPFSVEEVMGNL--HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINL 581

Query: 1066 LSNAIKYSAPGS-TITLDISKDEEH---LLFQVRDEGIGIPLQDQEKLFEAFHR--ASNV 1119
             +NA+K++  G  TI   + K E     L F V D GIG+    Q KLF+ F++   S  
Sbjct: 582  GNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTS 641

Query: 1120 GDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPLNPA 1164
                GTGLGL+I K   E  GG I + S+ G+G+T    + L  A
Sbjct: 642  RQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTA 686


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 93.2 bits (230), Expect = 4e-21
 Identities = 78/249 (31%), Positives = 121/249 (48%), Gaps = 27/249 (10%)

Query: 930  LVKERELNE----AKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKXXXXXXXX 985
            LV+ +E+ E    AKS FV  +SHE R+PL +IIGF +L+ +   +    ++        
Sbjct: 351  LVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLR--TKNLPMEQYENAGIIQ 408

Query: 986  XXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHL 1045
                 L  LI+++L  S+ +A K  +   N +L  L +DL +       +E   EL +  
Sbjct: 409  RSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANE-GIELIFIR 467

Query: 1046 KPDEHSLV--DVRLLRHILENILSNAIKYSAPGSTI-----------------TLDISKD 1086
              D    V  D   LR IL N+LSNAIK++  G  +                 T    K+
Sbjct: 468  DHDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKN 527

Query: 1087 EEHLLFQVRDEGIGIPLQDQEKLFEAFHRASNVGDIP-GTGLGLSIVKRYVEFQGGTIEV 1145
            +  L F ++D G GI   +   LFEAF +  +  +   GTGLGL+I +++++  GG I V
Sbjct: 528  KYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINV 587

Query: 1146 ISMPGKGTT 1154
             S+  +GTT
Sbjct: 588  SSVVDQGTT 596



 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 5   PSPKVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEMSELD 64
           P  K+L+VDD+  N   L + L     EI  A++GQEAI      E  L+ +   M  +D
Sbjct: 628 PVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMD 687

Query: 65  GLNTAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQN 115
           G    K ++       T ++ L    ++ +  A +   G  DFL +P  +N
Sbjct: 688 GYEATKYIKGQVKGNATAVVALT-ASVLEEEKAIVLSAGCDDFLRKPFREN 737


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 92.4 bits (228), Expect = 7e-21
 Identities = 78/257 (30%), Positives = 121/257 (47%), Gaps = 21/257 (8%)

Query: 921  RAEIETLRSLVKERE--LNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKX 978
            R + ET  +  KE     N AK++F+  +SHE RTPL +IIGF +LL +     S     
Sbjct: 142  RHQAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHR---DPSLAPHR 198

Query: 979  XXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHN 1038
                        L +LI+D+L +S+ +A +  +    I+   L ++L   F      E  
Sbjct: 199  PTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQL-RAQEKQ 257

Query: 1039 FELNYHLKPD--EHSLVDVRLLRHILENILSNAIKYSAPGSTITLDI------SKDEEH- 1089
              L     P+  E    D   LR +L N+L+NAIK++A G  +TL +        DE   
Sbjct: 258  LLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGG-VTLKVKCLTAPQTDEGQG 316

Query: 1090 ----LLFQVRDEGIGIPLQDQEKLFEAFHRA-SNVGDIPGTGLGLSIVKRYVEFQGGTIE 1144
                L F V D G GI   + ++LF  F +  + +    G GLGL I +++V+  GG I+
Sbjct: 317  ASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLGLPISQKFVQLMGGQIQ 376

Query: 1145 VISMPGKGTTMVIKLPL 1161
            V S   +G+     +P+
Sbjct: 377  VRSKVDQGSAFFFAIPV 393



 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 8   KVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEMSELDGLN 67
           KVL+VDD+ E+ + L + L SL   +  A +G+ AI         ++++  +M  LDG +
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 68  TAKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQP 111
           T + +++ P  + T II L          AEI   G  DFL++P
Sbjct: 479 TTQKIKASPQGQHTIIIALT-ASAFEGERAEILSAGCDDFLSKP 521


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score = 91.7 bits (226), Expect = 1e-20
 Identities = 151/689 (21%), Positives = 270/689 (39%), Gaps = 112/689 (16%)

Query: 496  DITERKLAEIQLKTINENLEVLIEERTXXXXXXXXXXXXXIIEKEQVSITLTT---QEAK 552
            +I ER+ AEI L+ +N NLE  +E+RT             I +K +    L     Q A+
Sbjct: 141  EIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAKEDLEKNKDQLAQ 200

Query: 553  YRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFYAQQRH 612
              A+V  + DAII  T+D  +   N  A  L GY  EE+IG  +   +L+  E   ++  
Sbjct: 201  LAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMIGSHI--TKLIPEELILEEDL 258

Query: 613  FWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQC--IVHDITLQKTIQA 670
                +++ Q     + +  +K G  I V ++ S I  E+ ++V    IV DIT +  ++ 
Sbjct: 259  IAECIRQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNVVGASKIVRDITARLDVEN 318

Query: 671  QLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKN-----ITGYSQEEINQC 725
             L+   YF    +EK+       Y  +    L    W  +  N     I GY+ EE    
Sbjct: 319  ALRESQYF----IEKLAN-----YSPQILYILDPIAWKNIYVNYQSFEILGYTPEEFKN- 368

Query: 726  GWYETLYSHGQPQEAVRV----RMKAVALGVDMVKEEWQIIRRDGA---LRTVEISTALI 778
            G  E L +   P +   +         +    ++  E+++  ++G+   LR+ E+  A  
Sbjct: 369  GGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRHKNGSWRWLRSREVVFARD 428

Query: 779  TSNNQTNILAVIQDITDQKRQLQIIQ---NNEATLRCIVENLPIFFGMRTINFSNWYYIN 835
                 T +L   QDI+D K Q Q +      E+ LR I + +     + TI  +    I 
Sbjct: 429  DYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIR 488

Query: 836  PSFES----LTGYTPDEMYE-------------DPLLWQKIHR----EEYAENLEQARPN 874
               E+    +  ++PD  +               P++   I        YA+  +Q R  
Sbjct: 489  QFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQ 548

Query: 875  LGE----------------------------------WTIFSMEKKDGTQIWAQTVEFLV 900
            + E                                  W +  + + D +++W QT   L+
Sbjct: 549  VIEDIHQSHLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLL 608

Query: 901  DDLSDTARVVVFGQDITDIKRAEIETLRSL-VKERELNEAKSQFVDIVSHEFRTPLTSII 959
              +++   + +    + +  + E+ +   L V+     E K   +  + H  +  L  + 
Sbjct: 609  KQITNQFEIAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRVKNNLQIM- 667

Query: 960  GFGELLSKYFDRLSTEKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNIN-- 1017
                LL   F + S                +   LI + L  S         +L NI+  
Sbjct: 668  --SSLLYLQFSKAS--PAIQQLSEEYQNRIQSMALIHEQLYRSE--------DLANIDFS 715

Query: 1018 --LRNLANDLIENFSCGLGSEHNFELNYHLK-PDEHSLVDVRLLRHILENILSNAIKYSA 1074
              L+NL +++ +++ C   S     L   +K P E S+     L  I++ ++SNA+K++ 
Sbjct: 716  QYLKNLTHNICQSYGCNTDSIKIKLLVEQVKVPLEQSIP----LGLIIQELVSNALKHAF 771

Query: 1075 PGS--TITLDISKDEEHLLFQVRDEGIGI 1101
            P +   I++  +    H   QV D G+GI
Sbjct: 772  PTTEGEISIKFTSMNSHYSLQVWDNGVGI 800


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score = 90.5 bits (223), Expect = 3e-20
 Identities = 87/295 (29%), Positives = 141/295 (47%), Gaps = 35/295 (11%)

Query: 892  WAQTVEFLVDDLSDTARVVVFGQDITDIKRAEI--ETLRSLVKERELNEAKSQFVDIVSH 949
            W    E L+ +L++        Q  T I  A +  E  ++     E +  KS+F+   +H
Sbjct: 152  WHPETEALLQELAE--------QTGTAIAHATLYQELTQATKAAEEASRLKSEFLASTTH 203

Query: 950  EFRTPLTSIIGFGELLSKYFDRLSTE-KKXXXXXXXXXXXXRLKQLIDDVLSISRYDANK 1008
            E RTPL  IIGF  L+    D   +E +K             L  LI+D+L +++ +A +
Sbjct: 204  ELRTPLNGIIGFLRLILD--DMADSEAEKHEFVEEAYQSALLLLNLINDILDLAKIEAGR 261

Query: 1009 IEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHL-KPDEHSLV---DVRLLRHILEN 1064
            + IEL  ++   +     ENF+  L    N  L+++L  P++  L+   + R L  ++ N
Sbjct: 262  VGIELEVVDFSEVL-QATENFA--LPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLN 318

Query: 1065 ILSNAIKYSAPGSTITLDISKDEEHLLFQ-----------VRDEGIGIPLQDQEKLFEAF 1113
            I+ NAIK++  G  IT+ +      +L++           V D GIG+ L+ Q KLF+ F
Sbjct: 319  IVGNAIKFTHEGG-ITVAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKF 377

Query: 1114 HR--ASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISM-PGKGTTMVIKLPLNPAP 1165
             +   S+     GTGLGL I ++ VE  GG +   SM  G G+T+   + L   P
Sbjct: 378  VQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVTFTVLLEELP 432


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 62/248 (25%), Positives = 115/248 (46%), Gaps = 7/248 (2%)

Query: 916  ITDIKRAEIETLRSLVKERELNEAK-SQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLST 974
            I ++   + E L  L +  E + A   +F  I SH+ + PL  +  + +LL   +     
Sbjct: 504  IVNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALD 563

Query: 975  EKKXXXXXXXXXXXXRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLG 1034
            E               ++ LIDD+L+ ++ D    ++   ++  + + +  + N    + 
Sbjct: 564  EDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTDV--QEVVDKALANLKQRI- 620

Query: 1035 SEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGST-ITLDISKDEEHLLFQ 1093
             E   E+     P    + D   L  + +N+++N IK++   S  I +   + E+  +F 
Sbjct: 621  EESGAEIEVGSMPAV--MADQIQLMQVFQNLIANGIKFAGDKSPKIKIWGDRQEDAWVFA 678

Query: 1094 VRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGT 1153
            V+D GIGI  Q  E++F  F R     +  GTG+GL+I K+ +E   G I + S PG+G+
Sbjct: 679  VQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGS 738

Query: 1154 TMVIKLPL 1161
            T    +P+
Sbjct: 739  TFYFSIPI 746


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 34/243 (13%)

Query: 656 QCIVHDITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNIT 715
           Q +  +I+ ++  +A L+  N+  + L+     G+F     +Q       +WNP  + I 
Sbjct: 243 QSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQ-----IWNPTAERIF 297

Query: 716 GYSQEEINQCGWYETLYSHGQPQEAVRVRMKAVALGVDMVKEEWQIIRRDGALRTVEIST 775
           G+++ EI      E L S+   ++  + + K ++ G+     E +  ++DG+   + +S 
Sbjct: 298 GWTETEI--IAHPELLTSNILLEDYQQFKQKVLS-GMVSPSLELKCQKKDGSWIEIVLSA 354

Query: 776 A--LITSNNQTNILAVIQDITDQKRQLQ--------IIQNNEATLRCIVENLPIFF-GMR 824
           A  L +  N   ++AV+ DIT+QKRQ +        ++  N+A +  I E  PI   G R
Sbjct: 355 APLLDSEENIAGLVAVVADITEQKRQAEQIRLLQSVVVNTNDAVV--ITEAEPIDDPGPR 412

Query: 825 TINFSNWYYINPSFESLTGYTPDEMY-EDPLLWQ--KIHREEYAENLEQARPNLGEWTIF 881
            +      Y+N +F  +TGYT +EM  + P + Q  K  R E    L++ R  + +W   
Sbjct: 413 IL------YVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTE----LDRVRQAISQWQSV 462

Query: 882 SME 884
           ++E
Sbjct: 463 TVE 465



 Score = 49.7 bits (117), Expect = 5e-08
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 20/225 (8%)

Query: 506 QLKTINENLEVLIEERTXXXXXXXXXXXXXIIEKEQVSITLTTQEAKYRALVRDAGDAII 565
           QL+ +N++LE  +E+RT             I E+++    L       ++L+  +   I 
Sbjct: 219 QLQQLNKDLENRVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIF 278

Query: 566 LITIDFIVLEVNYRAVELSGYDQEELIGH-SLLDLRLLTPEFYAQQRHFWRTLKREQISQ 624
            + +   +   N  A  + G+ + E+I H  LL   +L  ++    + F + +    +S 
Sbjct: 279 TLNLADQIQIWNPTAERIFGWTETEIIAHPELLTSNILLEDY----QQFKQKVLSGMVSP 334

Query: 625 LTDVRLVKKSGELISVDISASVI--TYENHSIVQCIVHDITLQKTIQAQLQRENYFRRQL 682
             +++  KK G  I + +SA+ +  + EN + +  +V DIT QK    Q+        +L
Sbjct: 335 SLELKCQKKDGSWIEIVLSAAPLLDSEENIAGLVAVVADITEQKRQAEQI--------RL 386

Query: 683 LEKMV---EGLFVCYEVEQF--PFLQFTVWNPMMKNITGYSQEEI 722
           L+ +V       V  E E    P  +    N     ITGY+ EE+
Sbjct: 387 LQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEEM 431


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 65/266 (24%), Positives = 108/266 (40%), Gaps = 69/266 (25%)

Query: 261 RDISEWARKEQAIRNSEANFRDIFASIKDGLLVL---------DEDNYICYA-NAQAVKL 310
           R++ +    E+ +  S A    +  S  DG+  +         D +++ C   N    K 
Sbjct: 137 REVRKRREAEEVLYQSRALLSSVLNSALDGIAAMQAVRNPQTGDIEDFRCLVINPILSKA 196

Query: 311 LNCTLEELVGTIG--------SPLEDTEFSLLVDDGTIYTVDV--SVTEITWYGQTA-KL 359
            N + E+L+G +          P    +F  LV+ GT  T D+   +    WY   A KL
Sbjct: 197 FNRSREDLIGRVLLKRFLQRLDPQLFDQFVNLVETGTFLTQDIYFPIANSDWYHFVAVKL 256

Query: 360 -----VSLRDISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAESFLG 414
                V++RDI+DRKRME +L +  N+  +LL N+D                       G
Sbjct: 257 GDGFAVTVRDITDRKRMELEL-QAANQQLQLLANID-----------------------G 292

Query: 415 LTDLEGRDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTDQLLWAY 474
           LT +  R   DEY     +E ++  +E+ P++ +L +    K                AY
Sbjct: 293 LTHIANRRRFDEY---LAQEWQRHCREQKPLSLILVDIDYFK----------------AY 333

Query: 475 INAYPEFYNEDTIQEIIVTFSDITER 500
            + Y     +D +Q++  T  DI +R
Sbjct: 334 NDLYGHQKGDDCLQKVANTLVDIAKR 359


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 10/151 (6%)

Query: 9   VLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEMSELDGLNT 68
           +LLVDD+      LS+AL      I  A+ G+  +      ++ L+IL   + ++ GL  
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 69  AKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYLQLF 128
            + +R   L   TP++FL  ++ +   +A ++  G  D+L +P     L  + +  L+  
Sbjct: 64  CRQIRI--LGHSTPVLFLTAKDTLDDRVAGLD-AGGDDYLIKPFELRELLARVRALLRRQ 120

Query: 129 QQKQTL-----QYYNNYLESSVKSVHFDVKN 154
              +T+        NN L  SV +V  DV N
Sbjct: 121 SHGETITETLGAVKNNLL--SVNNVSLDVAN 149


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 8   KVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIXXXXXXEFALMILAQEMSELDGLN 67
           K+LLVDD  E    LS  L+    ++ TAN+G EA+       + L++L   M +L+G+ 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEAL-QKLNESYKLVLLDVMMPKLNGIE 61

Query: 68  TAKILRSFPLAEQTPIIFL-ARQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYLQ 126
           T K +R        P++ L AR E I + +     LG  D L +P N   L  + K  L+
Sbjct: 62  TLKEIRK---VSNVPVMMLTARGEDIDRVLG--LELGADDCLPKPFNDRELIARIKAILR 116


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,081
Number of Sequences: 78
Number of extensions: 5429
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 20
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 55
length of query: 1178
length of database: 48,235
effective HSP length: 73
effective length of query: 1105
effective length of database: 42,541
effective search space: 47007805
effective search space used: 47007805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001575 slr0312 
         (209 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001575 slr0312                                            400   e-114
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...   137   3e-35
SYNE-PCC-01-000608 sll0921                                            130   2e-33
SYNE-PCC-01-001075 sll1592                                            128   2e-32
SYNE-PCC-01-001160 sll1708                                            119   6e-30
SYNE-PCC-01-002731 slr1909                                             82   2e-18
SYNE-PCC-01-002635 slr1783                                             72   2e-15
SYNE-PCC-01-002489 slr1588                                             67   3e-14
SYNE-PCC-01-001039 sll1544                                             67   6e-14
SYNE-PCC-01-000511 sll0782                                             58   2e-11
SYNE-PCC-01-001132 sll1672                                             57   3e-11
SYNE-PCC-01-002033 slr0947                                             55   1e-10
SYNE-PCC-01-000800 sll1228                                             55   1e-10
SYNE-PCC-01-002873 slr2098                                             55   2e-10
SYNE-PCC-01-002618 slr1760                                             55   2e-10
SYNE-PCC-01-000414 sll0649                                             53   9e-10
SYNE-PCC-01-002221 slr1213                                             52   2e-09
SYNE-PCC-01-001461 slr0115                                             52   2e-09
SYNE-PCC-01-002672 slr1837                                             51   2e-09
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    49   1e-08
SYNE-PCC-01-002951 ssl0564                                             47   4e-08
SYNE-PCC-01-002617 slr1759                                             46   1e-07
SYNE-PCC-01-001306 sll1905                                             45   1e-07
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    45   1e-07
SYNE-PCC-01-002086 slr1042                                             45   2e-07
SYNE-PCC-01-002879 slr2104                                             43   7e-07
SYNE-PCC-01-002788 slr1982                                             43   9e-07
SYNE-PCC-01-002486 slr1584                                             42   2e-06
SYNE-PCC-01-000242 sll0396                                             40   4e-06
SYNE-PCC-01-000518 sll0789                                             40   8e-06
SYNE-PCC-01-000877 sll1330                                             39   1e-05

>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score =  400 bits (1029), Expect = e-114
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MSQATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDL 60
           MSQATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDL
Sbjct: 1   MSQATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDL 60

Query: 61  RMPEVEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI 120
           RMPEVEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI
Sbjct: 61  RMPEVEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI 120

Query: 121 RTVHRGQKYIPPDVGAKLVQRLSNPELSERELEVLGSLAQGMSNADIATALSIGEGTVKS 180
           RTVHRGQKYIPPDVGAKLVQRLSNPELSERELEVLGSLAQGMSNADIATALSIGEGTVKS
Sbjct: 121 RTVHRGQKYIPPDVGAKLVQRLSNPELSERELEVLGSLAQGMSNADIATALSIGEGTVKS 180

Query: 181 HVNRILNKLDVGDRTQAVIVAVKRGIVSL 209
           HVNRILNKLDVGDRTQAVIVAVKRGIVSL
Sbjct: 181 HVNRILNKLDVGDRTQAVIVAVKRGIVSL 209


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score =  137 bits (345), Expect = 3e-35
 Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66
           ++VL+ DDH + R+G+  ++  D + +V+A   +G + I++  +  PDV ++DL M  + 
Sbjct: 5   LKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLS 64

Query: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126
           G+  +  + A    ARI++LT  D+  DIY  + AGA GYLLK+TEPD LL  I+ + +G
Sbjct: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124

Query: 127 QKYIPPDVGAKLVQRL--SNP--ELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHV 182
           +  +   +   L++R    NP   L++RE+ VL  +A G+SN  IA  L I E TVK H+
Sbjct: 125 EVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHI 184

Query: 183 NRILNKLDVGDRTQAVIV 200
             +L KL+V  R  A ++
Sbjct: 185 RNLLRKLNVHSRVAATVL 202


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score =  130 bits (328), Expect = 2e-33
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 17/219 (7%)

Query: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66
           IR+ + +D  + RQGL   +  +P  + + +A NG   + + ++ +PDV ++D+ +P++ 
Sbjct: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63

Query: 67  GVAAISAICA--IVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124
           G+     +    +    R+++LT  D +E +     AGA  Y +K++  + L+ AI+  H
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQATH 123

Query: 125 RGQKYIPPDVGAKLVQRLSNPE---------------LSERELEVLGSLAQGMSNADIAT 169
            G  +I P +   ++      E               L+ERELEVL  +  G SNADIA 
Sbjct: 124 GGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDGCSNADIAE 183

Query: 170 ALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIVS 208
            L I  GTVK+HV  ILNKL   DRTQA + A++ G+V+
Sbjct: 184 KLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGLVN 222


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score =  128 bits (321), Expect = 2e-32
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 16/221 (7%)

Query: 5   TTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPE 64
           T+IR+L+ +D  +FR GL T ++++P + V  +AE+GE AIA   +   DV ++D+ +P 
Sbjct: 6   TSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG 65

Query: 65  VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124
           + G+ A   I  I     +++LT++     I R ++A A+GY +K    + L+ AIR+V 
Sbjct: 66  IGGIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSVA 125

Query: 125 RG------------QKYIPPDVGAKLVQRLSNPE----LSERELEVLGSLAQGMSNADIA 168
            G            Q           V  L++ +    L++RELE+L  +A+G SN +IA
Sbjct: 126 AGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKGKSNQEIA 185

Query: 169 TALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIVSL 209
             L I  GTV+ HV+ IL KL+V DRTQA ++A++R +VSL
Sbjct: 186 DELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRLVSL 226


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score =  119 bits (299), Expect = 6e-30
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 9/210 (4%)

Query: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66
           +++LI +D  + + GL   +      ++I + +NG  A+       PD+ +MD+ +P ++
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126
           G+ A   I        I+VLT++    +I   L +GA  Y +K    + L+ AI     G
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAAQDG 136

Query: 127 QKYIPPDVGAKLVQRLSNP---------ELSERELEVLGSLAQGMSNADIATALSIGEGT 177
             Y+ P +   +V+ L  P          LSERE++VL  + +G SN +IA  L +   T
Sbjct: 137 ATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNT 196

Query: 178 VKSHVNRILNKLDVGDRTQAVIVAVKRGIV 207
           +K+HV  I+NKL V DR QA ++A++ G+V
Sbjct: 197 IKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 35  IAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAI--VKFARIIVLTTYDSD 92
           +  A NG +A+ L     PD+ + D+ MPE++G A I  +     + +  ++ L+     
Sbjct: 34  VTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQS 93

Query: 93  EDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGQKYI------PPDVGAKLVQRLSNPE 146
            +  +GL  GA  Y+ K  EP+EL   +++  R    +      P +  A+ VQ   + E
Sbjct: 94  HNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNAR-VQVARDVE 152

Query: 147 LSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206
           L+  E +V+  +AQG++N +IA  L + + TV+SHV+ +LNK  + +RT+    A+++ I
Sbjct: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 71.6 bits (174), Expect = 2e-15
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 29/232 (12%)

Query: 2   SQATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLR 61
           + A  I +L+ DD    R+ +   +    D +V   A N  +A    + H P + + D+ 
Sbjct: 51  AMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAA-NATEAWDYLQHHLPALVISDIM 109

Query: 62  MPEVEGVAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNA 119
           MP+V+G   +  +    +F    ++ LT      D  +G Q G   +L K  +PDEL   
Sbjct: 110 MPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAI 169

Query: 120 IRTVHRGQKYIPPDVGAK-------------LVQRLSNP------------ELSERELEV 154
           +R +   Q+    D G++             L +++  P            + + RE  V
Sbjct: 170 VRNLLARQQ-ASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSV 228

Query: 155 LGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206
           L  ++QG+ N +IA  L      V+ +V+R+  K     RT+ V  A++ G+
Sbjct: 229 LDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 67.4 bits (163), Expect = 3e-14
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFE--EHQPDVTLMDLRMPEVE 66
           +L+ +D AI R+ +   ++ +     I +AENG  A+ L    E  PD+ + D+ MPE++
Sbjct: 4   ILVVEDEAIIRELIGETLSLEN--YKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61

Query: 67  GVAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124
           G   I+A+    K A I  I LT   + +D  +G+ +GA  YL+K  + ++LLNA+ +  
Sbjct: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121

Query: 125 RGQ----KYIPPDVGAKLVQR------LSNPELSERELEVLGSLAQGMSNADI 167
           + Q     +    + + L +R      +  P L+  E E+   L  G++   +
Sbjct: 122 QKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 66.6 bits (161), Expect = 6e-14
 Identities = 48/195 (24%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 17  IFRQGLATIINRDPDMQVIAQAENGEQAIALFEEH-QPDVTLMDLRMPEVEGVAAISAIC 75
           +F   +A I ++ P+ + +       +A+  FE+  +P V ++  R+ +  G+  +  + 
Sbjct: 34  LFAVSVARISSQRPNKKKVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLK 93

Query: 76  AIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLN-AIRTVHRGQKYIPPDV 134
           A  +  + ++L   D    +    Q GA    L+ +  +  +N A+  + +G+ YI   +
Sbjct: 94  AHARSPQCLLLLLNDHAAIVEEAQQYGADAIFLESSLGNGEINLAVECLLQGRTYIDSRL 153

Query: 135 GAKLVQRLSNP-ELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGD 193
            A    R S   EL++RE+ +L  +A+G +N++I   L +   TV+ +V  I+ KL+  D
Sbjct: 154 EAIADYRKSQKDELTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARD 213

Query: 194 RTQAVIVAVKRGIVS 208
           RT A I  ++ G ++
Sbjct: 214 RTSAAIAGLREGYLT 228


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 58.2 bits (139), Expect = 2e-11
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 141 RLSNPELSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIV 200
           +L+   LSERE E++  LAQG+ + DIA  L I E TVK HVN  L+KL+  +R QA+  
Sbjct: 303 KLNKHLLSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQ 362

Query: 201 AVKRGIV 207
           A  +G +
Sbjct: 363 ATVQGFI 369


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
           ++L+ DD ++ RQ L  ++   P    I +A NG++AIAL+E  +P +  MD+RMP ++G
Sbjct: 631 KILVVDDKSVNRQLLIKLLA--PFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDG 688

Query: 68  VAAISAICAIVK--FARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125
             A   I   VK     ++ LT    +E+    L AG   +L K    + + +++ T H 
Sbjct: 689 YEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSL-TKHL 747

Query: 126 GQKYI 130
           G  Y+
Sbjct: 748 GVTYV 752


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 11  IADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAA 70
           + DD A  R+ L T ++       +  A +GE+AIA F E  PD+ ++D+ MP+++G   
Sbjct: 1   MVDDEASIRRILETRLSMIG--YEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58

Query: 71  ISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125
              +        II+LT      D   GL+ GA  Y++K   P EL   IR+V R
Sbjct: 59  CQELRKESDIP-IIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
           +VL+ DD    R  L  ++       V+ +AENGE AIAL+E   P V LMD++MP ++G
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGF--VVQEAENGEMAIALWESWHPQVILMDMQMPVLDG 476

Query: 68  VAAISAICAIV--KFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLN------A 119
            +    I A    +   II LT    + +    L AG   +L K   P+EL+       A
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLA 536

Query: 120 IRTVHRGQKYIPPDVGAKLVQRLSNPELSERELEVLGSLAQGMS 163
           +    +GQ   PP    +    ++ P LSE+  +   S  Q M+
Sbjct: 537 VALPSQGQ---PPASPLRPFPVITAPSLSEQLAKTPQSWRQKMA 577


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 8    RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
            R+L+ +D+ I  Q +A  + RD    V   A NG  A+     +   + LMD++MPE++G
Sbjct: 926  RILLVEDNEI-NQEVAAELLRDVGFNVDVAA-NGLIALERLNNNAYALVLMDMQMPEMDG 983

Query: 68   VAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125
            + A  AI    ++A+  I+ +T      D  R LQAG   +L K  EP+EL N +     
Sbjct: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIP 1043

Query: 126  GQKYIPPDVGAKLVQRLSNPELSERELEVLGS 157
                + P+   +     S+PE+S   +  L S
Sbjct: 1044 VDSPLAPETIEESAINTSDPEISIPHIPGLNS 1075


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 3   QATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRM 62
           +    ++L+ DD    R  L   + ++     +  A NGE+A+  F E +P+V L+D  M
Sbjct: 8   ETAAAKILVVDDDGFMRMQLRVYLQKEGHR--VELATNGEEALTKFAEIKPEVVLLDAVM 65

Query: 63  PEVEGVAAISAICAIVK--FARIIVLTTYDSDEDIYRGLQAGAKGYLLK 109
           P ++G A   A+  I +     ++++T  D +  + R  +AGA  Y+ K
Sbjct: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTK 114


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 52.8 bits (125), Expect = 9e-10
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGV 68
           +LI +D     Q +   + R+    ++    +GE  + +F+E  PD+ ++DL +P+++G+
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTN--DGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 69  AAISAICAI--VKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRG 126
              + I      K   I++LT    + D   GL  GA  YL+K   P EL+  +R + R 
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 127 Q 127
           Q
Sbjct: 132 Q 132


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMP-EVE 66
           ++LI +D  +  Q +A ++  D   ++   A +G  A+    E  PD+ L+D+R+  E++
Sbjct: 4   KILIVEDERLVAQHIAQLLKSD-GYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62

Query: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI 120
           G+     I ++     I+ LT +   E + R  +   +GY++K    ++LL+ +
Sbjct: 63  GIEVAERIKSLYSIP-IVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
           R+LI DD       ++  IN +     + QA +G +  AL  + QPD+ ++DL +P+V+G
Sbjct: 3   RILIIDDDPAISDLVS--INLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 68  VAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125
                 +    + A I  ++LT     +D  +G  +GA  YL K  + +E+L  +R + R
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120

Query: 126 GQKYIP 131
               IP
Sbjct: 121 RTDRIP 126


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGV 68
           +L+ DD     + L+  +        I  A+ G+  +A+    Q D+ ++D  +P+V G+
Sbjct: 4   ILLVDDENALTEPLSKALGHQG--HTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 69  AAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGQK 128
                I  +     ++ LT  D+ +D   GL AG   YL+K  E  ELL  +R + R Q 
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 129 Y 129
           +
Sbjct: 122 H 122


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 5   TTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPE 64
           TT ++L+ +D  + R  L  I   + +   + +AENG +   +   H  ++ +MD+ +P 
Sbjct: 2   TTPKILVVEDEIVTRNTLKGIF--EAEGYDVFEAENGVEMHHILANHNINLVVMDINLPG 59

Query: 65  VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDEL-LNAIRTV 123
             G+     +   +    +I LT  D++ D   GL+ GA  YL K   P EL + A   +
Sbjct: 60  KNGLLLARELREELSLP-LIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118

Query: 124 HRGQKY 129
           HR   +
Sbjct: 119 HRAMPH 124


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 47.4 bits (111), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 147 LSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206
           LS+RELE+L  +A G++N +++  L I + TV +HV+ IL K +  +R + V  A++ G 
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWGK 71

Query: 207 VSL 209
           V L
Sbjct: 72  VCL 74


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 7    IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66
            +++L+A+D+ + ++    ++N       +A A NG++ I   E+   D+ LMD++MP ++
Sbjct: 1190 LQILLAEDNLVNQKVAHQMLNNLG--YPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMD 1247

Query: 67   GVAA---ISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIR 121
            G+ A   I     + +  RI+ +T      D    L AG  GY+ K    ++L   ++
Sbjct: 1248 GITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 40  NGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAI--CAIVKFARIIVLTTYDSDEDIYR 97
           +G +A+    + QPD+ L+DL MP ++G+     +      +   +I LT  +  +D+ +
Sbjct: 49  SGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQ 108

Query: 98  GLQAGAKGYLLKETEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLSNPELSERELEVLGS 157
               GA  Y+ K   P ELL  ++T H   K    ++   L+++    E        LG 
Sbjct: 109 AFAKGAVDYVTKPFSPPELLARVKT-HLELKQTRDNLHHTLLEQARTAEALACTSTRLGI 167

Query: 158 LAQGMSNADIAT 169
           L Q M    + T
Sbjct: 168 LVQNMQAGVLMT 179



 Score = 44.7 bits (104), Expect = 2e-07
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 4   ATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMP 63
           ++ + +L+A+D+ I +Q    ++ +      +    NG++A++   +   DV LMD+ MP
Sbjct: 737 SSNLTILLAEDNLINQQVAKLLLKKLG--YPVDVVNNGQEALSALAKGDYDVVLMDVEMP 794

Query: 64  EVEGVAAISAICAIVKFAR---IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI 120
           E++G+ A   I      +    II +T Y  + D  R L +G   Y+ K    + L  A+
Sbjct: 795 EMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQAL 854

Query: 121 R 121
           +
Sbjct: 855 Q 855


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 6   TIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEV 65
           T ++LI +D    R+ +A  +++      + +A + + AI   +E+ P + L+D  +P  
Sbjct: 2   TRKILIVEDECAIREMIALFLSQK--YYDVIEASDFKTAINKIKEN-PKLILLDWMLPGR 58

Query: 66  EGVAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTV 123
            G+  I  I     +A I  I+LT   ++ED    L AGA  Y+ K   P  LL  I  V
Sbjct: 59  SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118

Query: 124 HR 125
            R
Sbjct: 119 WR 120


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGV 68
           VL+ +D +  R+ ++ I+ +D   QV    + G +A+   +   PD+ ++D+ MP + G 
Sbjct: 30  VLLVEDSSSQREMISGIL-KDHGWQVTIACD-GVEALEKLQNFSPDLVVLDIVMPRMNGY 87

Query: 69  AAISAICAIVKFARIIVLTTYDSDEDIYR--GLQAGAKGYLLKETEPDELLNAIRTVHR 125
                I +  K   + V+      E+  R  G++ GA  Y+ K  +P EL+  I+ + R
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 43.1 bits (100), Expect = 7e-07
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 1   MSQATTIRVLIADDHAIFRQGLATII-NRDPDMQVIAQAENGEQAIALFEEHQPDVTLMD 59
           ++Q     +L+ +D+ I R+    ++ ++   +QV   A NG++A+ L   +  D  LMD
Sbjct: 712 ITQLEGASILLVEDNEINREFAHDLLTSKGLRVQV---ANNGQEALTLLTSNTYDAILMD 768

Query: 60  LRMPEVEGVAAISAI--CAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELL 117
           ++MP + G  A  AI      +   II +T      D  + L AG   +L K  +PD L 
Sbjct: 769 IQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828

Query: 118 NAIRTVHRGQKYIPPD 133
             +        +IPP+
Sbjct: 829 QTL------AHWIPPN 838


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 42.7 bits (99), Expect = 9e-07
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67
           +VL+ +D+ + R  L+  + R     VIA   +GEQA+ +     P + LMD+ +P ++G
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAV--DGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 68  VAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTV 123
             A   I      A   II LT +    D  R + AG   Y  K  E   LL  +  +
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66
           +R+L+ +D     + LA  ++    +  +  A +   A       + D+ ++D+ +PE++
Sbjct: 1   MRILLVEDDLPLAETLAEALS--DQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58

Query: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125
           G+       +      I+++T  D+  D   GL AGA  Y++K  +  EL   +R + R
Sbjct: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 40.4 bits (93), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 42/87 (48%)

Query: 35  IAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAIVKFARIIVLTTYDSDED 94
           ++ A +G +     +E  PD+ +++  +P + G+     +  +     II++T  D  E+
Sbjct: 29  VSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCRRLREMGSRIPIILITAKDDVEE 88

Query: 95  IYRGLQAGAKGYLLKETEPDELLNAIR 121
              GL AGA  Y++K    DE    IR
Sbjct: 89  RVMGLDAGADDYIVKPFNSDEFFARIR 115


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 39.7 bits (91), Expect = 8e-06
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTL--MDLRMPE 64
           +R+L+ +D       L   + R+    V+   ++G  A +  ++   + TL   D  +P 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRREN--YVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPG 58

Query: 65  VEGVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124
           + G+     +        I++LT  D   D   GL AGA  YL+K     ELL  +R++ 
Sbjct: 59  LSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQ 118

Query: 125 RGQKYIPP 132
           R    + P
Sbjct: 119 RRSPELQP 126


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 39.3 bits (90), Expect = 1e-05
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 21/190 (11%)

Query: 34  VIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAIVKFARIIVLTTYDSDE 93
           ++ Q     QA   F    P + ++D  + + +G+     +    + + I +L+  D+++
Sbjct: 29  LVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCRWLYQQHQ-SMIFILSAKDTEK 87

Query: 94  DIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGQKYIPP----DVGA---KLVQRL---- 142
           DI  GL+AGA  YL K     E L  I  + R  + +      D G     LVQR     
Sbjct: 88  DIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTVAAPLLLDYGVLKIDLVQRRVEYQ 147

Query: 143 -SNPELSERELEVLGSLAQGMSNADIATAL--------SIGEGTVKSHVNRILNKLDVGD 193
            +  +L+ +E  +L  L Q   +A   T L             T+ +HV  +  K++   
Sbjct: 148 GNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAWPEAIDNPRTIDTHVLSLRKKIETDP 207

Query: 194 RTQAVIVAVK 203
           R  ++I  V+
Sbjct: 208 RQPSLIQTVR 217


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.135    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,567
Number of Sequences: 78
Number of extensions: 695
Number of successful extensions: 53
Number of sequences better than 1.0e-05: 31
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 34
length of query: 209
length of database: 48,235
effective HSP length: 59
effective length of query: 150
effective length of database: 43,633
effective search space:  6544950
effective search space used:  6544950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001690 slr0473 
         (748 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001690 slr0473                                           1496   0.0  
SYNE-PCC-01-000295 sll0474                                             92   7e-21
SYNE-PCC-01-001517 slr0222                                             91   1e-20
SYNE-PCC-01-001306 sll1905                                             91   2e-20
SYNE-PCC-01-000800 sll1228                                             89   5e-20
SYNE-PCC-01-002879 slr2104                                             89   6e-20
SYNE-PCC-01-002873 slr2098                                             89   6e-20
SYNE-PCC-01-000542 sll0821                                             87   2e-19
SYNE-PCC-01-001509 slr0210                                             86   4e-19
SYNE-PCC-01-001280 sll1871                                             86   4e-19
SYNE-PCC-01-000891 sll1353                                             82   4e-18
SYNE-PCC-01-002617 slr1759                                             81   1e-17
SYNE-PCC-01-001294 sll1888                                             79   6e-17
SYNE-PCC-01-000985 sll1475                                             76   3e-16
SYNE-PCC-01-002778 slr1969                                             74   1e-15
SYNE-PCC-01-001132 sll1672                                             71   1e-14
SYNE-PCC-01-002220 slr1212                                             57   2e-10
SYNE-PCC-01-000983 sll1473                                             43   4e-06

>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 1496 bits (3873), Expect = 0.0
 Identities = 748/748 (100%), Positives = 748/748 (100%)

Query: 1   MATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL 60
           MATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL
Sbjct: 1   MATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL 60

Query: 61  LGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVC 120
           LGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVC
Sbjct: 61  LGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVC 120

Query: 121 ELEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDE 180
           ELEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDE
Sbjct: 121 ELEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDE 180

Query: 181 NNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNP 240
           NNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNP
Sbjct: 181 NNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNP 240

Query: 241 STNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFE 300
           STNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFE
Sbjct: 241 STNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFE 300

Query: 301 LRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLL 360
           LRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLL
Sbjct: 301 LRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLL 360

Query: 361 GLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFK 420
           GLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFK
Sbjct: 361 GLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFK 420

Query: 421 SVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKE 480
           SVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKE
Sbjct: 421 SVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKE 480

Query: 481 IVRLQSLPWQSVEIQSALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDL 540
           IVRLQSLPWQSVEIQSALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDL
Sbjct: 481 IVRLQSLPWQSVEIQSALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDL 540

Query: 541 QEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQL 600
           QEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQL
Sbjct: 541 QEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQL 600

Query: 601 TFTDVQEVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDK 660
           TFTDVQEVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDK
Sbjct: 601 TFTDVQEVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDK 660

Query: 661 SPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKI 720
           SPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKI
Sbjct: 661 SPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKI 720

Query: 721 IEGHQGQIWLESNPGEGSTFYFSIPIGN 748
           IEGHQGQIWLESNPGEGSTFYFSIPIGN
Sbjct: 721 IEGHQGQIWLESNPGEGSTFYFSIPIGN 748


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score = 91.7 bits (226), Expect = 7e-21
 Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 17/254 (6%)

Query: 509 LRQAEELAQLARNLERSNADLK-KFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAK 567
           +++AEE  +L+  +      LK +F    SH+L+ PLN +   ++ L+ +    L+    
Sbjct: 397 IKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQV 456

Query: 568 DFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTF--TDVQEVVDKALANLKQRIEESGA 625
             ++        + +LI+DIL  +K++     L    T V  +V+ +L  ++Q   +   
Sbjct: 457 QSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQI 516

Query: 626 EIE---VGSMPAVMADQIQLMQVFQNLIANGIKFAGD------KSPKIKIWGDRQEDA-- 674
            +    + ++P V+ D+ +L QV  NL+ N IKF  +      ++  IK  G     +  
Sbjct: 517 NLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPP 576

Query: 675 -WVFAVQDNGIGIDPQFFERIFVIFQRLHT--RDEYKGTGMGLAICKKIIEGHQGQIWLE 731
              F V D GIGI+      IF  F ++ +     Y GTG+GL++ KKI+E H G + + 
Sbjct: 577 QLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVT 636

Query: 732 SNPGEGSTFYFSIP 745
           S   EGS F  +IP
Sbjct: 637 SKLNEGSRFKITIP 650


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 90.9 bits (224), Expect = 1e-20
 Identities = 63/248 (25%), Positives = 119/248 (47%), Gaps = 7/248 (2%)

Query: 504  IVNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALD 563
            I ++   + E L  L +  E + A   +F  I SH+ + PL  +  + +LL   +     
Sbjct: 916  ITDIKRAEIETLRSLVKERELNEAK-SQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLST 974

Query: 564  EDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTDV--QEVVDKALANLKQRI- 620
            E  + +I+        ++ LIDD+L+ ++ D    ++   ++  + + +  + N    + 
Sbjct: 975  EKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLG 1034

Query: 621  EESGAEIEVGSMPAV--MADQIQLMQVFQNLIANGIKFAGDKSPKIKIWGDRQEDAWVFA 678
             E   E+     P    + D   L  + +N+++N IK++   S  I +   + E+  +F 
Sbjct: 1035 SEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGST-ITLDISKDEEHLLFQ 1093

Query: 679  VQDNGIGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGS 738
            V+D GIGI  Q  E++F  F R     +  GTG+GL+I K+ +E   G I + S PG+G+
Sbjct: 1094 VRDEGIGIPLQDQEKLFEAFHRASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGT 1153

Query: 739  TFYFSIPI 746
            T    +P+
Sbjct: 1154 TMVIKLPL 1161


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 90.5 bits (223), Expect = 2e-20
 Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 35/340 (10%)

Query: 434 HNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVE 493
           HNFL    PE L  V    +    +E       +    +  F L+++I + + +  + ++
Sbjct: 229 HNFLAIESPEPLLKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQV--EMIQ 286

Query: 494 IQSALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQL 553
            QS L +++ +   +  Q +EL       E +N    +F    SH+++ P+N +     L
Sbjct: 287 GQS-LEMERRMRQQLAEQNQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGL 345

Query: 554 LEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTD------VQE 607
           L       L    K F          + TLI+DIL ++K++     L          ++E
Sbjct: 346 L---LDTDLTTQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEE 402

Query: 608 VVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKIKIW 667
            +D  + + +Q+             P +  D  +L Q+  NL++N +KF      K+ + 
Sbjct: 403 ALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVE 462

Query: 668 -----GDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTR--DEYKGTGMGLAICKKI 720
                  + E    FAVQD GIGI P   + +F  F + ++     + GTG+GLAIC ++
Sbjct: 463 VVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRL 522

Query: 721 IEGHQGQIWLESN----------------PGEGSTFYFSI 744
                G IW ESN                  EGSTFYF++
Sbjct: 523 TALMGGTIWAESNGCVVGNPPELWQIGQPTIEGSTFYFTV 562


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 89.0 bits (219), Expect = 5e-20
 Identities = 83/266 (31%), Positives = 123/266 (46%), Gaps = 25/266 (9%)

Query: 497 ALALKKAIVNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEM 556
           A+A  +      L QA+E A  A      N    +F    SH+L+ PLN +  + QLL  
Sbjct: 137 AIAQARHQAETTLTQAKEAADAA------NRAKTEFLASISHELRTPLNAIIGFSQLLHR 190

Query: 557 RYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLT--FTDVQEVVDKALA 614
             S A      D I+ +  G  L++ LI+DIL  +K++     L     D   ++D   A
Sbjct: 191 DPSLAPHRPTLDIINRS--GEHLLE-LINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQA 247

Query: 615 NLKQRIEESGAEIEVGSMPAV----MADQIQLMQVFQNLIANGIKFA--GDKSPKIKIWG 668
             + R +E    ++V   P V      D  +L QV  NL+AN IKF   G  + K+K   
Sbjct: 248 LFQLRAQEKQLLLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLT 307

Query: 669 DRQEDA------WV-FAVQDNGIGIDPQFFERIFVIFQRLHTR-DEYKGTGMGLAICKKI 720
             Q D       W+ F V D G GI     + +FV F +  T     +G G+GL I +K 
Sbjct: 308 APQTDEGQGASIWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLKSCQGNGLGLPISQKF 367

Query: 721 IEGHQGQIWLESNPGEGSTFYFSIPI 746
           ++   GQI + S   +GS F+F+IP+
Sbjct: 368 VQLMGGQIQVRSKVDQGSAFFFAIPV 393


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 16/243 (6%)

Query: 518 LARNLERSNADLKKFAYIA--SHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVT 575
           L   L    A   K  ++A  SH+++ P+N +   + + E+     L    ++++     
Sbjct: 445 LEAKLVAEGATKAKSEFLANMSHEIRTPMNAI---IGMSELVLQTDLTSQQRNYLQKVQY 501

Query: 576 GVSLMQTLIDDILTYAKVDTQYAQLTFT--DVQEVVDKALANLKQRIEESGA----EIEV 629
              L+  +I++IL ++K++    +L      V+EV+    + L  + E  G      ++ 
Sbjct: 502 AGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDP 561

Query: 630 GSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKIK---IWGDRQEDAWVFAVQDNGIGI 686
              P ++ D+++L Q+  NL  N +KF       I+   +  + ++    F+V D GIG+
Sbjct: 562 RIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGL 621

Query: 687 DPQFFERIFVIFQR--LHTRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744
            P    ++F  F +    T  +Y GTG+GLAI K + E   G IWLES  G+GSTF+F++
Sbjct: 622 TPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTV 681

Query: 745 PIG 747
            +G
Sbjct: 682 CLG 684


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 24/249 (9%)

Query: 509 LRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKD 568
           +++A+ELA+ A    R  AD   F    SH+++ P+N V   + +  +     L    ++
Sbjct: 513 MKRAKELAEEA---SRIKAD---FLANMSHEIRTPMNAV---IGMTHLALKTDLTPRQRE 563

Query: 569 FIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTDVQEVVDKALANLKQRIEESGA--- 625
           ++         +  +I+DIL ++K++    +L    +   +DK L N+   I E      
Sbjct: 564 YLHKIRFSGQHLLGVINDILDFSKIEA--GKLPMESIDFDLDKVLDNVATLISEKATNKG 621

Query: 626 -----EIEVGSMPAVMADQIQLMQVFQNLIANGIKFA--GDKSPKIKIWGDRQEDAWVF- 677
                +I+       + D ++L Q+  N   N +KF   GD +  +++   R +D  ++ 
Sbjct: 622 LELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYL 681

Query: 678 AVQDNGIGIDPQFFERIFVIFQRLH--TRDEYKGTGMGLAICKKIIEGHQGQIWLESNPG 735
           AV+D GIGI P+    +F  FQ+    T   + GTG+GLAICK+I E   G++ +ES  G
Sbjct: 682 AVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYG 741

Query: 736 EGSTFYFSI 744
           +GSTF+  +
Sbjct: 742 QGSTFWAKV 750


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 9/156 (5%)

Query: 144 LNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAED-KRDDMEPYLGLH 202
           +N+  +   LR+   VIVEE R   G DRV +Y+F  +  G+V+AE   R  +   LGLH
Sbjct: 15  INKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGSGEVLAEAVNRAALPSLLGLH 74

Query: 203 YPESDIPQPARRLFIHNPIRVIPDVYG---VAVPLTPAVNPSTNRAVDLTESILRSAYHC 259
           +P  DIP  AR    +    +  DV      +  L+  ++P+ +     T     +   C
Sbjct: 75  FPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYT-----TVDSC 129

Query: 260 HLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPK 295
           H+ YL  MGV +SLT+ +++D  LWG++A HH  P+
Sbjct: 130 HIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPR 165



 Score = 52.0 bits (123), Expect = 6e-09
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 25/152 (16%)

Query: 145  NRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYP 204
            N++R   N+ D     V EVR+    DRV+L++F+    G V+ E   D     +     
Sbjct: 932  NKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFNSQWSGQVVTESHNDFCRSIINDEID 991

Query: 205  ESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTYL 264
            +        RL+    +R + D+                   DL +        CH   L
Sbjct: 992  DPCFKGHYLRLYREGRVRAVSDI----------------EKADLAD--------CHKELL 1027

Query: 265  KNMGVGASLTISLIKDGHLWGLIACHH-QTPK 295
            ++  V A+L + ++ + +LWGL+  H  +TP+
Sbjct: 1028 RHYQVKANLVVPVVFNENLWGLLIAHECKTPR 1059


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score = 85.9 bits (211), Expect = 4e-19
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 11/217 (5%)

Query: 538 HDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQY 597
           H+ + PL  +  + ++L       L+     ++   +     + +L++D L  +K+D + 
Sbjct: 195 HEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKIDARC 254

Query: 598 AQLTFTDVQ------EVVDKALANLKQRIEESGAEIEVGSMPAVMADQIQLMQVFQNLIA 651
            +L +  V        V+       K++       I+ G +     DQ +  Q+  NL++
Sbjct: 255 EELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDG-VDFCYVDQRRWKQILINLLS 313

Query: 652 NGIKFAGDKSPKIKIWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQRLHTRDEY--KG 709
           NG+KF    S  + +     + A +F+V D GIGIDP+    +F  F+++     +  KG
Sbjct: 314 NGVKFTPKGSVTLAV--KATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPSFAEKG 371

Query: 710 TGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSIPI 746
           TG+GLA+ +++ + H G I L S PG GS F   +P+
Sbjct: 372 TGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPL 408


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score = 85.9 bits (211), Expect = 4e-19
 Identities = 84/300 (28%), Positives = 150/300 (50%), Gaps = 32/300 (10%)

Query: 473 QSFDLWKEIVRLQSLPWQSVEIQSALALKK-AIVNLILRQ-----AEELAQLARNLERSN 526
           +SF+L    +R  +   +    +  LA K+ A+ N  L +      EEL    + LE ++
Sbjct: 369 KSFNLMTNELRESNSSLEKKNQELELAQKQLAVANSCLEEKVQQRTEELENTVKALELAS 428

Query: 527 ADLK-----KFAYIA--SHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFID----FAVT 575
           ++ +     K  ++A  SH+L+ PLN +  Y ++L     EA D D+++ +        +
Sbjct: 429 SEAEAANATKSIFLANMSHELRTPLNAIIGYSEML---IEEAEDLDSEELVPDLDKILRS 485

Query: 576 GVSLMQTLIDDILTYAKVDTQYAQL---TFTDVQEVVDKALANLKQRIEESGAEIEVG-- 630
           G SL+  LI+D+L  +K++    +L   TF +++E++   L  +   ++ +  ++EV   
Sbjct: 486 GKSLL-ALINDLLDISKIEAGKMELYLETF-NLKELIAGILDTISPLLKNNNNKLEVEIS 543

Query: 631 -SMPAVMADQIQLMQVFQNLIANGIKFAGDK--SPKIKIWGDRQEDAWVFAVQDNGIGID 687
                V  D I+L Q   NL++N  KF  D   S  ++ +   ++D   F V+D GIG+ 
Sbjct: 544 LESEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLT 603

Query: 688 PQFFERIFVIFQRLH--TRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSIP 745
            +   ++F  F +    T  +Y GTG+GLAI +K  +   G I+L S  G GS+F   +P
Sbjct: 604 EEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLP 663


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score = 82.4 bits (202), Expect = 4e-18
 Identities = 67/256 (26%), Positives = 122/256 (47%), Gaps = 23/256 (8%)

Query: 505 VNLILRQAEELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDE 564
           + + LR+A+E A+LA  ++       +F    SH+++ P+N +  +  LL  +  +    
Sbjct: 582 IEIKLREAKESAELANRVK------SEFLANISHEIRTPMNAILGFCDLLLQK--DLSLS 633

Query: 565 DAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQLTFTDVQ-EVVDKALANLKQRIEES 623
             K +++   +   ++  LIDDIL  +K++     +    V   V+ + +  +     ES
Sbjct: 634 QTKKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAES 693

Query: 624 GA-----EIEVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKIKIWGD----RQEDA 674
            +     +I+     A+  D ++L Q+  NL+ N +KF  +    I I  +    R +  
Sbjct: 694 KSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGT 753

Query: 675 WV---FAVQDNGIGIDPQFFERIFVIFQRLHTRD--EYKGTGMGLAICKKIIEGHQGQIW 729
           ++     V D GIGI P+   +IF +F +   +   +Y GTG+GL I +++     G+I 
Sbjct: 754 YISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEIS 813

Query: 730 LESNPGEGSTFYFSIP 745
           L S  GEGSTF    P
Sbjct: 814 LSSRLGEGSTFILHFP 829


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 80.9 bits (198), Expect = 1e-17
 Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 41/314 (13%)

Query: 464  DGKIELHPRQSFDLWK--EIVRLQSLPWQ-SVEIQSALALKKAIVNLILRQAEELAQLAR 520
            +G I LH      +W   EI  L+++  Q  + +  A  L+K        +  ELAQ   
Sbjct: 708  NGIIALHQCDRQRVWTADEIELLEAIAEQMGIALAQAALLEKE-----RERRRELAQKNL 762

Query: 521  NLERS-------NADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFA 573
             LE++       N    +F  + SH+++ P+N V    +LL M     L+    D++   
Sbjct: 763  ELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMT---DLNLQQLDYVQTI 819

Query: 574  VTGVSLMQTLIDDILTYAKVDTQYAQLTFT--DVQEVVDKALANLKQRIEESGAEIEVGS 631
                  + T+I+DIL ++K++     L     +++ +++  L            E+  G 
Sbjct: 820  RQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGI 879

Query: 632  MPA----VMADQIQLMQVFQNLIANGIKFAGDKSPKIKIWGDRQEDAW------------ 675
             P     ++ DQ++L Q+  NLI N +KF       + + G+  + A             
Sbjct: 880  DPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPS 939

Query: 676  ---VFAVQDNGIGIDPQFFERIFVIFQRLH--TRDEYKGTGMGLAICKKIIEGHQGQIWL 730
                F ++D GIGI     +R+F  F ++   T  +Y GTG+GL I +++ +   G + +
Sbjct: 940  HRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTV 999

Query: 731  ESNPGEGSTFYFSI 744
             S PG GS F F I
Sbjct: 1000 TSEPGVGSNFRFCI 1013


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score = 78.6 bits (192), Expect = 6e-17
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 25/253 (9%)

Query: 513 EELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLL--EMRYSEALDEDAKDFI 570
           +EL Q  +  E ++    +F    +H+L+ PLN +  +++L+  +M  SEA   +  +F+
Sbjct: 178 QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEA---EKHEFV 234

Query: 571 DFAVTGVSLMQTLIDDILTYAKVDTQYA--QLTFTDVQEVVDKALANLKQRIEESGAEIE 628
           + A     L+  LI+DIL  AK++      +L   D  EV+         + +  G    
Sbjct: 235 EEAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFN 294

Query: 629 VGSMP----AVMADQIQLMQVFQNLIANGIKF--------AGDKSPKIKIW-GDRQEDAW 675
           + +       V  +Q  L+QV  N++ N IKF        A +  P+  +W G ++    
Sbjct: 295 LTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLL 354

Query: 676 VFAVQDNGIGIDPQFFERIFVIFQRL---HTRDEYKGTGMGLAICKKIIEGHQGQI-WLE 731
             +V D GIG+  +   ++F  F ++   H++  Y GTG+GL I +K++E   G++ +  
Sbjct: 355 KVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSK-AYGGTGLGLVISQKLVETMGGKVAFFS 413

Query: 732 SNPGEGSTFYFSI 744
              G GST  F++
Sbjct: 414 MGEGLGSTVTFTV 426


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 76.3 bits (186), Expect = 3e-16
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 510 RQAEELAQLARNLERSNADLK-KFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKD 568
           R+  E  +LA   E+  + LK +F  +ASH+ + PL+      QLLE      LD D + 
Sbjct: 49  RRRTEEVRLALEREKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRS 108

Query: 569 F-IDFAVTGVSLMQTLIDDILTYAKVDTQYAQLT--FTDVQEVVDKALANLKQRIEESGA 625
             +      V  M  L+DDIL   + +    +    + D++ +  + +  ++  + +   
Sbjct: 109 RNLHRIQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQYY 168

Query: 626 EIEVGSMPAVMA--DQIQLMQVFQNLIANGIKFAGDKSPKIKIWGDRQEDAWVFAVQDNG 683
              + S     A  D+  +  +  NL++N IK++     +IKI      +  +F V D G
Sbjct: 169 FDFICSAQDTKALVDERLVRSILSNLLSNAIKYSPGGG-QIKIALSLDSEQIIFEVTDQG 227

Query: 684 IGIDPQFFERIFVIFQRLHTRDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGST 739
           IGI P+  ++IF  F R        GTG+GL + KK ++ H G I L+S   +G+T
Sbjct: 228 IGISPEDQKQIFEPFHRGKNVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT 283


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 74.3 bits (181), Expect = 1e-15
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 34/304 (11%)

Query: 470 HPRQSFDLWKE----------IVRLQSLPWQSVEIQSALALKKAIVNLILRQAEELAQLA 519
           HPRQ  D  K           +  +QSL +  V+ Q     K      ++ + +EL    
Sbjct: 315 HPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQ-----KNNFEKRVIERTKELRDTL 369

Query: 520 RNLERSNADLKKFAYIASHDLQEPLNQVSNY-VQLLEMRYSEALDEDAKD---FIDFAVT 575
              + +N    +F    SH+L+ PL  +      LL      A    AK     ++    
Sbjct: 370 MAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQEN 429

Query: 576 GVSLMQTLIDDILTYAKVDTQYAQLT------FTDVQEVVDKALA-NLKQRIE-ESGAEI 627
           G  L+   I+ I+  +++++    L        T  Q V+   L   +KQ+I  E   +I
Sbjct: 430 GKKLLDQ-INSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQI 488

Query: 628 EVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKI-KIWGDRQEDAWVFAVQDNGIGI 686
            VG      ADQ +L Q+   L+ N +KF   +   I +IW  ++ +  +F V+D GIGI
Sbjct: 489 NVGQ-DQFCADQERLDQILTQLLNNALKFTPAEGTVILRIW--KESNQAIFQVEDTGIGI 545

Query: 687 DPQFFERIFVIFQRLHTR--DEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744
           + Q    +F  F+         Y+  G+GLA+ K+++E H G I +ES+PG+G+ F   I
Sbjct: 546 NEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVI 605

Query: 745 PIGN 748
           P  N
Sbjct: 606 PQQN 609


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 71.2 bits (173), Expect = 1e-14
 Identities = 82/294 (27%), Positives = 133/294 (45%), Gaps = 43/294 (14%)

Query: 483 RLQSLPWQSVEIQSALALKKAI-VNLILRQAEELAQLARNLERSNADLKK-FAYIASHDL 540
           +LQ L +Q  E++ A   K  I  N  L++  +L + A+ +  S A  K  F    SH+L
Sbjct: 319 KLQEL-YQQRELERAQREKILIEYNESLQKQVDLVR-AKEIAESEAKAKSTFVANMSHEL 376

Query: 541 QEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQYAQL 600
           + PLN +  + QL+ +R      E  ++      +G  L+  LI++IL ++K++     L
Sbjct: 377 RSPLNAIIGFSQLM-LRTKNLPMEQYENAGIIQRSGEYLLN-LINNILDFSKIEAGKTHL 434

Query: 601 TFT--DVQEVVDKALANLKQRIEESGAE---IEVGSMPA-VMADQIQLMQVFQNLIANGI 654
                D+  ++D     L  +    G E   I    +P  V  D+I+L Q+  NL++N I
Sbjct: 435 NRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIKLRQILLNLLSNAI 494

Query: 655 KFAGD-----------------------KSPKIKIWGDRQEDAWVFAVQDNGIGIDPQFF 691
           KF  +                         PK K W D       F ++D G GI     
Sbjct: 495 KFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLD-------FTIKDTGKGISEVEL 547

Query: 692 ERIFVIFQRLHT-RDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744
             +F  F +  + R+  +GTG+GLAI ++ I+   G I + S   +G+TF FSI
Sbjct: 548 SHLFEAFSQTESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSI 601


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 146 RLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNH---GDVIAEDKRDDMEPYLGLH 202
           R+RQ  +L   ++ +V+E+R+    DRV++++F  ++    G+++AE      +P +   
Sbjct: 469 RIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSA 528

Query: 203 YPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLT 262
             E+       + +    I+VI D++                     +S LR    CH+ 
Sbjct: 529 IEETCFSNNYAQRYQQGRIQVIEDIH---------------------QSHLRQ---CHID 564

Query: 263 YLKNMGVGASLTISLIKDGHLWGLIACH 290
           +L  + V A+L + LI D  LWGL+  H
Sbjct: 565 FLARLQVRANLVLPLINDAILWGLLCIH 592


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 36/162 (22%)

Query: 141 NAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLG 200
           N     +RQ  NL    +  V EV+ +   DRV++YR  ++  G  I E    +    LG
Sbjct: 47  NQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVNANYPSILG 106

Query: 201 LHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCH 260
             + +   P    + +    +R I D+    + +                        C 
Sbjct: 107 RTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEI------------------------CL 142

Query: 261 LTYLKNMGVGASLTISLIKDG------------HLWGLIACH 290
             ++K  GV + L + +++              +LWGL+  H
Sbjct: 143 ADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITH 184


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,571
Number of Sequences: 78
Number of extensions: 3128
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 18
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 25
length of query: 748
length of database: 48,235
effective HSP length: 70
effective length of query: 678
effective length of database: 42,775
effective search space: 29001450
effective search space used: 29001450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-001777 slr0599 
         (535 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-001777 slr0599                                            807   0.0  
SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847...    52   3e-09

>SYNE-PCC-01-001777 slr0599
          Length = 535

 Score =  807 bits (2085), Expect = 0.0
 Identities = 420/535 (78%), Positives = 420/535 (78%)

Query: 1   MVTPLKLLNNRYRIIETLGRGGFGETFLAQDTHMPSARKCVIKHLKPVLENPEIPSWLRE 60
           MVTPLKLLNNRYRIIETLGRGGFGETFLAQDTHMPSARKCVIKHLKPVLENPEIPSWLRE
Sbjct: 1   MVTPLKLLNNRYRIIETLGRGGFGETFLAQDTHMPSARKCVIKHLKPVLENPEIPSWLRE 60

Query: 61  RFHREAATLEELGENHPQIPQLYAYFSEGEDFYLVQEWIPGLTLTQAHAQKGNFSSTAVE 120
           RFHREAATLEELGENHPQIPQLYAYFSEGEDFYLVQEWIPGLTLTQAHAQKGNFSSTAVE
Sbjct: 61  RFHREAATLEELGENHPQIPQLYAYFSEGEDFYLVQEWIPGLTLTQAHAQKGNFSSTAVE 120

Query: 121 ELLLGILPVLEFIHQRRIIHRDIKPDNIILREADGKPILIDFGIIKETMGTLVNPDGRSA 180
           ELLLGILPVLEFIHQRRIIHRDIKPDNIILREADGKPILIDFGIIKETMGTLVNPDGRSA
Sbjct: 121 ELLLGILPVLEFIHQRRIIHRDIKPDNIILREADGKPILIDFGIIKETMGTLVNPDGRSA 180

Query: 181 YSVALGTPGYMASEQAAGRPVFSSDLYSLGLTAIFLLTGKTPQYLTSDSRTGEILWRQGA 240
           YSVALGTPGYMASEQAAGRPVFSSDLYSLGLTAIFLLTGKTPQYLTSDSRTGEILWRQGA
Sbjct: 181 YSVALGTPGYMASEQAAGRPVFSSDLYSLGLTAIFLLTGKTPQYLTSDSRTGEILWRQGA 240

Query: 241 PQVSPTLAKVIDQAVRYHPRERFNSATAMAQTLQGNFSNVPMTKGDRPGNTVANGKTKSN 300
           PQVSPTLAKVIDQAVRYHPRERFNSATAMAQTLQGNFSNVPMTKGDRPGNTVANGKTKSN
Sbjct: 241 PQVSPTLAKVIDQAVRYHPRERFNSATAMAQTLQGNFSNVPMTKGDRPGNTVANGKTKSN 300

Query: 301 HQPTAPTLVVGTPYNANDTQATKVYTQEFTGYTETQEGSPLMKWVVMPLVVLLVIGGGMA 360
           HQPTAPTLVVGTPYNANDTQATKVYTQEFTGYTETQEGSPLMKWVVMPLVVLLVIGGGMA
Sbjct: 301 HQPTAPTLVVGTPYNANDTQATKVYTQEFTGYTETQEGSPLMKWVVMPLVVLLVIGGGMA 360

Query: 361 AGFWVTSQRRNNXXXXXXXXXXXXXXXXXXXXXRPNLFXXXXXXXXXXXXXXXXXXXXXX 420
           AGFWVTSQRRNN                     RPNLF                      
Sbjct: 361 AGFWVTSQRRNNPPPAVEEPTEETPIPLPSLEPRPNLFETPSPIPTPATPSPEPTPSPSP 420

Query: 421 XXXXXXXXXXXXXXXMEPEPSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
                          MEPEPSLD                                     
Sbjct: 421 SPETTSSPTEDTITPMEPEPSLDEPAPIPEPKPSPSPTISPQPSPTISIPVTPAPVPKPS 480

Query: 481 XXXXXXXXXXXXXXXXXXXXNTVPVIPPPENPSAETEPNLPAPPVGEKPIDPEQN 535
                               NTVPVIPPPENPSAETEPNLPAPPVGEKPIDPEQN
Sbjct: 481 PSPTPKPTVPPQISPTPQPSNTVPVIPPPENPSAETEPNLPAPPVGEKPIDPEQN 535


>SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847,
           reverse complement
          Length = 513

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 41/227 (18%)

Query: 76  HPQIPQLYAYFSEGEDF-----YLVQEWIPGLTLTQAHAQKGNFSSTAVEELLLGILPVL 130
           HP I  L   F E         YLV E I    L +   +K        + L   +L  L
Sbjct: 257 HPNIVNLLDSFVEPISKSQIQKYLVLEKIDDGELFERIVRKTCLRQDESKALFKQLLTGL 316

Query: 131 EFIHQRRIIHRDIKPDNIILR------------------EADGKPILIDFGIIKETMGTL 172
           +++H++ IIHRDIKP+NI+L                   E D +  + DFG+ K T    
Sbjct: 317 KYLHEQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEIDIQVKIADFGLAKFT---- 372

Query: 173 VNPDGRSAYSVAL-GTPGYMASEQAAGRPVFSS-DLYSLGLTAIFLLTGKTP--QYLTSD 228
               G   ++  L GTP Y+A E    +   S  DL+S G+     L G  P    L   
Sbjct: 373 ----GEMQFTNTLCGTPSYVAPEVLTKKGYTSKVDLWSAGVILYVCLCGFPPFSDQLGPP 428

Query: 229 SRTGEILWRQGA------PQVSPTLAKVIDQAVRYHPRERFNSATAM 269
           S   +IL  + A       ++  ++  +I   +  +P ER+N   A+
Sbjct: 429 SLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEAL 475


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.316    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,543
Number of Sequences: 78
Number of extensions: 1741
Number of successful extensions: 9
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 535
length of database: 48,235
effective HSP length: 67
effective length of query: 468
effective length of database: 43,009
effective search space: 20128212
effective search space used: 20128212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 95 (41.2 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002033 slr0947 
         (234 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002033 slr0947                                            459   e-132
SYNE-PCC-01-001461 slr0115                                            180   3e-48
SYNE-PCC-01-000414 sll0649                                            177   3e-47
SYNE-PCC-01-001437 slr0081                                            161   2e-42
SYNE-PCC-01-000242 sll0396                                            159   6e-42
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  145   1e-37
SYNE-PCC-01-002486 slr1584                                            133   4e-34
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   126   5e-32
SYNE-PCC-01-000877 sll1330                                            125   1e-31
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   124   2e-31
SYNE-PCC-01-002672 slr1837                                            117   3e-29
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...   114   2e-28
SYNE-PCC-01-000518 sll0789                                            114   4e-28
SYNE-PCC-01-002731 slr1909                                            103   4e-25
SYNE-PCC-01-002086 slr1042                                             96   1e-22
SYNE-PCC-01-000523 sll0797                                             94   4e-22
SYNE-PCC-01-001133 sll1673                                             93   9e-22
SYNE-PCC-01-002489 slr1588                                             89   2e-20
SYNE-PCC-01-002635 slr1783                                             87   4e-20
SYNE-PCC-01-001306 sll1905                                             84   4e-19
SYNE-PCC-01-002618 slr1760                                             78   3e-17
SYNE-PCC-01-002788 slr1982                                             75   2e-16
SYNE-PCC-01-000800 sll1228                                             67   5e-14
SYNE-PCC-01-001132 sll1672                                             62   2e-12
SYNE-PCC-01-002617 slr1759                                             59   1e-11
SYNE-PCC-01-002879 slr2104                                             59   2e-11
SYNE-PCC-01-002221 slr1213                                             58   3e-11
SYNE-PCC-01-001575 slr0312                                             55   2e-10
SYNE-PCC-01-001075 sll1592                                             53   8e-10
SYNE-PCC-01-002873 slr2098                                             53   1e-09
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    51   3e-09
SYNE-PCC-01-001160 sll1708                                             49   1e-08
SYNE-PCC-01-000608 sll0921                                             46   1e-07
SYNE-PCC-01-001517 slr0222                                             43   8e-07

>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  459 bits (1180), Expect = e-132
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120
           ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP
Sbjct: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120

Query: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180
           GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW
Sbjct: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180

Query: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPGEEP 234
           GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPGEEP
Sbjct: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPGEEP 234


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  180 bits (457), Expect = 3e-48
 Identities = 95/234 (40%), Positives = 143/234 (61%), Gaps = 6/234 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           ++DD+ +I  ++   L M GY+V  A DG +  A   +  PDL++LD+M+PK+DG+ VCQ
Sbjct: 6   IIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTVCQ 65

Query: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
            LR++   +DIP++MLTALG + D+I G + GADDY+ KPF  +E+ AR+R++LRR D+ 
Sbjct: 66  RLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTDRI 125

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQ 177
                  S +L    + +   + +     + I+LT +EF LL  L+ R G+  S S+IL+
Sbjct: 126 PQ-AAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDILR 184

Query: 178 EVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPG 231
           EVWGY P+  ++T  + VHI  LR KLE +P  P  I T  G GY  +   E G
Sbjct: 185 EVWGYEPDDDIET--IRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEEG 236


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  177 bits (449), Expect = 3e-47
 Identities = 97/232 (41%), Positives = 144/232 (62%), Gaps = 12/232 (5%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+D+  I +++   L    +  +   DGE  +  F E  PDL+VLD+M+PKLDG  VC 
Sbjct: 16  IVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEVCT 75

Query: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
            +R++    D  I+MLTA G+  DRI GL  GADDY+VKPFSP+EL AR+R++LRR  + 
Sbjct: 76  RIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQLRQ 135

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQV--YKGD--ERIRLTGMEFSLLELLVSRSGEPFSRS 173
           G    P   + +    ++D ++ Q   Y+GD  E + LTG+EF+LL   +S  G  ++R+
Sbjct: 136 GQ---PVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192

Query: 174 EILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225
           ++++++WG   +   D RVVD HI RLR K+E DP+NP  I T  G GY F+
Sbjct: 193 QLIEKLWG--NDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  161 bits (408), Expect = 2e-42
 Identities = 93/232 (40%), Positives = 139/232 (59%), Gaps = 13/232 (5%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHE--SDP-----DLVVLDVMMPKL 53
           +V+DE SIR  +   L   GYEV    DG +A+A   E   DP     DL++LD+M+P++
Sbjct: 35  VVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLPQV 94

Query: 54  DGYGVCQELRKESD-IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112
           +G  VC+ LR   D  PI++++A G   +++TGLE+GADDY+ KPFS KEL AR R+++R
Sbjct: 95  NGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAMIR 154

Query: 113 RVDKNGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSR 172
           R    G+ G   +   +   + +   + +V    E + L   EF LLEL +S     +SR
Sbjct: 155 R---QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211

Query: 173 SEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224
            ++++ +WG   +   D++ VDVHI  LR KLE+DPS PE ++T RG GY F
Sbjct: 212 EQLIEHIWGI--DFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  159 bits (403), Expect = 6e-42
 Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 10/226 (4%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V++E  + R +E  L   GY+V  A DG +      E  PDL++++  +P + G  +C+
Sbjct: 7   VVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCR 66

Query: 61  ELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119
            LR+  S IPII++TA  DV +R+ GL+ GADDY+VKPF+  E  ARIR  LRR      
Sbjct: 67  RLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHTT-- 124

Query: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179
               S  VLQ A +R + + R++ +GD  I LT  EF LL+ L+S + +  +R +IL+ V
Sbjct: 125 ----SDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERV 180

Query: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225
           WGY  +   D+ +++V+I  LR KLE     P LI T RG GY+ +
Sbjct: 181 WGY--DFMGDSNIIEVYIRYLRLKLEA-AGEPRLIQTVRGVGYVLR 223


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  145 bits (366), Expect = 1e-37
 Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD+  +  +L T L + G++V TA +G EA+   +ES   LV+LDVMMPKL+G    +
Sbjct: 6   LVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIETLK 64

Query: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120
           E+RK S++P++MLTA G+  DR+ GLELGADD + KPF+ +EL ARI+++LRR   +   
Sbjct: 65  EIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRR-SASPSN 123

Query: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180
            I +  +L    I +  +       +E + LT  EF +L LL+   G   SR E+  EV 
Sbjct: 124 NISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSLEVM 183

Query: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 222
              P    D R +D+HIS LR KL +  + P    T RG GY
Sbjct: 184 -EKPLTPFD-RSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  133 bits (335), Expect = 4e-34
 Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+D+  +   L   LS   Y V  A D   A       + DLV+LDVM+P+LDG  +CQ
Sbjct: 5   LVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITLCQ 64

Query: 61  ELRKESDI-PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119
           + R  S + PI+M+TA   + D+ITGL+ GADDYVVKP    EL AR+R++LRR      
Sbjct: 65  KWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCATCQ 124

Query: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179
           P      VL+   IR+D +  +V   +E + LT  E+S+LELL+       SRS I+  +
Sbjct: 125 P------VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSI 178

Query: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILE 229
           W        DT  V VH+  LR KL+    + + I T  G GY    + E
Sbjct: 179 WKLESPPEEDT--VKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTE 226


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  126 bits (317), Expect = 5e-32
 Identities = 86/231 (37%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+DE +IR ++   LS   Y+V+ A+D + AI    E+ P L++LD M+P   G    Q
Sbjct: 7   IVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQFIQ 65

Query: 61  ELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
            ++K+     IPIIMLTA     D I  L  GADDY+ KPFSP+ L ARI +V RR+ + 
Sbjct: 66  YIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIYEQ 125

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQ 177
                  S  +QI  + ID N ++V+   + I L+  EF LL   +    + +SR ++L 
Sbjct: 126 ------QSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLN 179

Query: 178 EVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRIL 228
            +W    E  V+ R VD +I RLR  L         I T RG+GY F   L
Sbjct: 180 RIWHNDLE--VEYRTVDSYIRRLRRNLAPFQCE-HYIQTVRGSGYRFSSYL 227


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  125 bits (314), Expect = 1e-31
 Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+    +R +L   L   GY V   +   +A   F+   P L V+D  +   DG  +C+
Sbjct: 8   VVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCR 67

Query: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120
            L ++    I +L+A     D + GL+ GADDY+ KPF  +E  ARI  ++RRV     P
Sbjct: 68  WLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTVAAP 127

Query: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180
            +   GVL+I  ++    +R  Y+G+  + LT  EFSLL +L    G   SR+E+L+  W
Sbjct: 128 LLLDYGVLKIDLVQ----RRVEYQGN-FVDLTPQEFSLLYVLTQAEGSALSRTELLRRAW 182

Query: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224
              PE   + R +D H+  LR K+E DP  P LI T R  GY F
Sbjct: 183 ---PEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRF 223


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  124 bits (312), Expect = 2e-31
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 14/228 (6%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +++D+  I   L+  L+ +G+ V    DG+  +A    +  D VVLD+ +PKLDG  V Q
Sbjct: 5   LIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQ 64

Query: 61  ELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119
           + R    D+P+++LTA   + +R+ GL+ GADDY+ KPF+  E+ AR+++++RR  + G 
Sbjct: 65  QWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR--RYGY 122

Query: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179
                  V++ A +++D N+R V+  ++ I LT  E+ LLEL +       SRS I +++
Sbjct: 123 ----HHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL 178

Query: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRI 227
             +  E  + +  +DVHI  LR KL       + I T  G GY   ++
Sbjct: 179 SSWDEE--ISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQV 219


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  117 bits (294), Expect = 3e-29
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDDE ++   L   L   G+ +  A  G+  +A       DL++LD M+P++ G  +C+
Sbjct: 6   LVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEICR 65

Query: 61  ELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK--- 116
           ++R      P++ LTA   + DR+ GL+ G DDY++KPF  +EL AR+R++LRR      
Sbjct: 66  QIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSHGET 125

Query: 117 -NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEI 175
                G   + +L +  + +D   +  Y   +RI L+  E +LL L +   G+  S  EI
Sbjct: 126 ITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHEEI 185

Query: 176 LQEVW-GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225
              +W G +P     + V+   +  LR K+E+ P+ P LI +  G GY F+
Sbjct: 186 YSHLWPGESPP---SSNVLAALVRLLRRKIEQ-PNAPRLINSVYGKGYCFE 232


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score =  114 bits (286), Expect = 2e-28
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 12/230 (5%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+DE   R  L+      GY+V  A +G E        + +LVV+D+ +P  +G  + +
Sbjct: 8   VVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLLAR 67

Query: 61  ELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120
           ELR+E  +P+I LT   +  D+I GLE+GADDY+ KPF+P+EL  R R++L R     MP
Sbjct: 68  ELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR----AMP 123

Query: 121 GIPSSGVL-----QIATIRIDTNKRQVYKGD-ERIRLTGMEFSLLELLVSRSGEPFSRSE 174
                        +    ++D N   +   + +  +L   EF  +       G+  +R E
Sbjct: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183

Query: 175 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224
           +L+++ G   E     R VDV I R+R   E+ P+ P +I+T  G GY F
Sbjct: 184 LLKKMTG--RELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  114 bits (284), Expect = 4e-28
 Identities = 84/229 (36%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHES--DPDLVVLDVMMPKLDGYGV 58
           +V+DE  +   LE  L    Y V    DG  A +   +   +  L + D M+P L G  +
Sbjct: 5   LVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGLEL 64

Query: 59  CQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
           CQ+LR + S +PI+MLTA   +ADR+ GL+ GADDY++KPF   EL AR+RS+ RR    
Sbjct: 65  CQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR---- 120

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDE-RIRLTGMEFSLLELLVSRSGEPFSRSEIL 176
             P +     LQ+    +D     V   ++ RI LT  EF LLE  +    +  S  +I 
Sbjct: 121 -SPELQPQ-QLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIK 178

Query: 177 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225
            ++W  + E    + VV   +  LR KLEE  S+  LI T  G GY FQ
Sbjct: 179 NQLWALSAES--TSNVVAAQVRLLRRKLEE-YSHGNLIETVYGLGYRFQ 224


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score =  103 bits (258), Expect = 4e-25
 Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 26/206 (12%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD+ ++  +++  L   GY+V TA +G EA+     + PD++V D+MMP++DGY   +
Sbjct: 12  LVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIE 71

Query: 61  ELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
           ++R+  D   IP++ L+A G   +R+ GL +GAD Y+ KPF P+EL A+++S LR+ D+ 
Sbjct: 72  QVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADR- 130

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQ 177
                    +LQ     ++ N R     D  + LT  E  +++L+     +  +  EI  
Sbjct: 131 ---------LLQHNNHPLEDNARVQVARD--VELTPTETKVIQLV----AQGLANREIAD 175

Query: 178 EVWGYTPERHVDTRVVDVHISRLRAK 203
            +        V  R V+ H+S +  K
Sbjct: 176 HL-------KVSQRTVESHVSNMLNK 194


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 95.9 bits (237), Expect = 1e-22
 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+D +S R ++   L   G++V  A DG EA+       PDLVVLD++MP+++GY VC+
Sbjct: 32  LVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCR 91

Query: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112
            ++   K  ++P+IM ++ G+  DR  G+  GAD Y+ KPF P EL   I+ +LR
Sbjct: 92  RIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 94.0 bits (232), Expect = 4e-22
 Identities = 75/236 (31%), Positives = 118/236 (50%), Gaps = 22/236 (9%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHE--SDPDLVVLDVMMPKLDGYGV 58
           +V+DE  +   ++  L    Y V    DG +A        ++  L ++D ++P L G  +
Sbjct: 5   LVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGLEL 64

Query: 59  CQELRKESD-IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
           CQ+LR + + +P++MLTALG+  +R+ GL+ GADDY+ KPF   EL AR+R++ RR    
Sbjct: 65  CQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR-SPQ 123

Query: 118 GMPGI---------PSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGE 168
             P I         PS+ +L + TI    N  +     + I LT  EF + + L+     
Sbjct: 124 FQPQILTLGNFSLDPSNNLLSV-TISEPLNLER-----QEIALTVREFQIFQYLMQNPER 177

Query: 169 PFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224
             S S+I Q++W    E    + VV   +  +R KL +  + P  I T  G GY F
Sbjct: 178 IISGSKIRQQLWDLDEEPM--SNVVAAQMRLIRRKLAQQ-NCPCPIKTVPGQGYRF 230


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 92.8 bits (229), Expect = 9e-22
 Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD  +  ++L   L  +GY V +   G+ A+ T     PDL++LD+ MP +DGY VC+
Sbjct: 13  LVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCE 72

Query: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARI 107
            ++KE    DIPII ++ALGD  D++   E G  DY+ KPF  +E+ ARI
Sbjct: 73  MIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-20
 Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 5/121 (4%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESD--PDLVVLDVMMPKLDGYGV 58
           +V+DEA IR ++   LS+  Y+++ A +G  A+   +  +  PDL++ DVMMP++DG+G+
Sbjct: 6   VVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGHGL 65

Query: 59  CQELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 115
              L+K +    IP I LTALG + D   G+  GADDY++KPF  ++L   + S L++  
Sbjct: 66  ITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQKQA 125

Query: 116 K 116
           K
Sbjct: 126 K 126


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 87.4 bits (215), Expect = 4e-20
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 1   MVDDEASIRRILETRLSMIG-YEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVC 59
           +VDDE  +R  ++  L   G ++V  AA+  EA        P LV+ D+MMP++DGY   
Sbjct: 60  LVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFL 119

Query: 60  QELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 116
           Q+LR+++    +P++ LTA G   DRI G + G D ++ KPF P ELEA +R++L R   
Sbjct: 120 QKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQA 179

Query: 117 NGMPGIPSSGVLQI 130
           +   G  S+ + +I
Sbjct: 180 SSDAGSESAKLQEI 193


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 84.0 bits (206), Expect = 4e-19
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD      ++   L   GY       G EA+    ++ PDL++LD+MMP +DG  VC 
Sbjct: 22  VVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCD 81

Query: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
            L+++    DIP+I LTA  +  D +     GA DYV KPFSP EL AR+++ L
Sbjct: 82  RLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135



 Score = 57.4 bits (137), Expect = 4e-11
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           + +D    +++ +  L  +GY V    +G+EA++   + D D+V++DV MP++DG    +
Sbjct: 744 LAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATE 803

Query: 61  ELRK---ESDIP-IIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIR 108
            +R+    S+ P II +TA     DR   L  G +DYV KP   + L+  ++
Sbjct: 804 HIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 77.8 bits (190), Expect = 3e-17
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD+  +R  L   L   G+ V  A +GEEA+  F E  P++V+LD +MP +DG+  CQ
Sbjct: 16  VVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFACCQ 75

Query: 61  ELRKESDIP---IIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
            L K    P   ++M+T L D A      E GA DYV KP     L  R++ +L
Sbjct: 76  ALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 74.7 bits (182), Expect = 2e-16
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+D    R +L  RL   GYEVV A DGE+A+       P L+++D+ +P +DG+   +
Sbjct: 9   LVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTATK 68

Query: 61  ELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
           +++   D   IPII LTA    +DR   +  G DDY  KP   K L  ++ +++
Sbjct: 69  QIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 67.0 bits (162), Expect = 5e-14
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD    R +L   L+ +G+ V  A +GE AIA +    P ++++D+ MP LDG    Q
Sbjct: 422 VVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQ 481

Query: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR-RVDK 116
           +++   +     II LTA     +R   L  G DD++ KPF P+EL A +   L   +  
Sbjct: 482 KIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPS 541

Query: 117 NGMPGIPSSGVLQIATIRIDTNKRQVYK 144
            G P  P+S +     I   +   Q+ K
Sbjct: 542 QGQP--PASPLRPFPVITAPSLSEQLAK 567


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD++  R++L   L+  G+E+  A++G+EAIA +   +P L+ +D+ MP +DGY   +
Sbjct: 634 VVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATK 693

Query: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPF 98
            ++   K +   ++ LTA     ++   L  G DD++ KPF
Sbjct: 694 YIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
            + +D    +++    L+ +GY V  A +G+E I    +   DLV++D+ MP +DG   C+
Sbjct: 1194 LAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACR 1253

Query: 61   ELRK----ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103
             +R+    E    I+ +TA     DR   L+ G D Y+ KP S  +L
Sbjct: 1254 HIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300



 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHES-DPDLVVLDVMMPKLDGYGVC 59
            +VDD  + RRIL+ +    G        GE A+  F    D D  +LD+ MP +DG  + 
Sbjct: 1038 IVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPNMDGITLA 1097

Query: 60   QELR---KESDIPIIMLTALGDVADRITGLELGADDYVV 95
              LR   +  D+PII+L+         +GL  GAD+  V
Sbjct: 1098 HHLRQFAQGKDLPIILLS---------SGLVAGADELSV 1127


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +V+D    R      L+  G  V  A +G+EA+     +  D +++D+ MP L+GY   +
Sbjct: 722 LVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATR 781

Query: 61  ELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSP 100
            +R++    ++PII +TA     D+   L+ G +D++ KP  P
Sbjct: 782 AIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP 824


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 1   MVDDEASIRRILETRLSMIGYEV-VTAADGEEAIATFHESDPDLVVLDVMMP-KLDGYGV 58
           +V+DE  + + +   L   GYE+ V A+DG  A+    E  PDLV+LD+ +  ++DG  V
Sbjct: 7   IVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGIEV 66

Query: 59  CQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103
            + ++    IPI+ LTA  D        +     YV+KPF  ++L
Sbjct: 67  AERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQL 111


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 9/118 (7%)

Query: 1   MVDDEASIRRILETRLSMIG--YEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGY-- 56
           + DD A  R+ L T ++       +  A +GE+AIA F E  PD+ ++D+ MP+++G   
Sbjct: 11  IADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAA 70

Query: 57  --GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112
              +C  ++      II+LT      D   GL+ GA  Y++K   P EL   IR+V R
Sbjct: 71  ISAICAIVKFAR---IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 1   MVDDEASIRRILETRLSMI-GYEVV-TAADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58
           +V+D+   R  L TRLS   G +V   A DGE AIA  ++   D+V+LDV +P + G   
Sbjct: 12  LVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGGIEA 71

Query: 59  CQELRK-ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSV 110
           C +++K    +P+++LT+    A     +E  A  Y VK  + + L   IRSV
Sbjct: 72  CHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSV 124


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
            +V+D    + +    L  +G+ V  AA+G  A+   + +   LV++D+ MP++DG     
Sbjct: 929  LVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEATI 988

Query: 61   ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103
             +R+    + +PI+ +TA     DR   L+ G +D++ KP  P+EL
Sbjct: 989  AIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPD-----LVVLDVMMPKLDG 55
           +VDD    R +++  L  + + V T   G EA+    E+D +     +V +D  MP +DG
Sbjct: 775 VVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDG 834

Query: 56  YGVCQELRK---ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111
             V + L+         I ++TA G     +    LG DD +VKP SP  L   +  VL
Sbjct: 835 LEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVL 893


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 1   MVDDEASIRRILETRLSMI-GYEVVT-AADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58
           ++DD   +RR ++  + +   +EVV   + G E I+   ++ PD+++LD+ M  L G   
Sbjct: 9   LIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGLDT 68

Query: 59  CQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSV 110
            + LR E  D  I++LT      D  T ++ GAD Y++K   P  L  +I+ +
Sbjct: 69  LKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 1   MVDDEASIRRILETRLSMIG-YEVVTAAD-GEEAIATFHESDPDLVVLDVMMPKLDGYGV 58
           +V+D+  ++  LE  L     +E++   D G  A+      +PDL+V+D+ +P LDG   
Sbjct: 21  IVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGIEA 80

Query: 59  CQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKN 117
            +++++ S  I I++LT+     + I  L  GAD Y VK  + + L   I +      ++
Sbjct: 81  TKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA-----QD 135

Query: 118 GMPGIPSSGVLQIATIRIDTNKRQVYKGDERI-RLTGMEFSLLELLVSRSGEPFSRSEIL 176
           G   +      QIA + ++  K  V +G   +  L+  E  +L+L+V    E  S  EI 
Sbjct: 136 GATYLDP----QIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIV----EGKSNQEIA 187

Query: 177 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTAR 218
           Q +       ++ T  +  H+  +  KL  D      ++  R
Sbjct: 188 QTL-------YLSTNTIKTHVRGIMNKLSVDDRVQAAVIALR 222


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 1   MVDDEASIRRILETRLSMI-GYEVV-TAADGEEAIATFHESDPDLVVLDVMMPKLDGYGV 58
           +++DE  IR+ L+  L+M   +E V  AA+G   +    ++ PD+V++D+ +P ++G  V
Sbjct: 8   LIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDV 67

Query: 59  CQELRK---ESDIPIIMLTALGDVADRITGLELGADDYVVK 96
            Q+L+K        +++LT        +     GAD Y +K
Sbjct: 68  TQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60
           +VDD+      L   L  +  E++TA  G+EAIAT   ++  L++L   M +LDG    +
Sbjct: 11  LVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGLNTAK 70

Query: 61  ELRK---ESDIPIIMLTALGDVADRITGLE-LGADDYVVKPFSPKELEARIRSVLR 112
            LR        PII L     +   +  +  LG  D++ +P +   L+ + +  L+
Sbjct: 71  ILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQPPNQNFLQVKAKLYLQ 126


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.139    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,410
Number of Sequences: 78
Number of extensions: 1007
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 38
length of query: 234
length of database: 48,235
effective HSP length: 60
effective length of query: 174
effective length of database: 43,555
effective search space:  7578570
effective search space used:  7578570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002086 slr1042 
         (147 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002086 slr1042                                            300   1e-84
SYNE-PCC-01-000414 sll0649                                            100   4e-24
SYNE-PCC-01-001306 sll1905                                             97   2e-23
SYNE-PCC-01-002033 slr0947                                             96   5e-23
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   96   5e-23
SYNE-PCC-01-002731 slr1909                                             96   7e-23
SYNE-PCC-01-002635 slr1783                                             91   2e-21
SYNE-PCC-01-001461 slr0115                                             91   2e-21
SYNE-PCC-01-001437 slr0081                                             90   4e-21
SYNE-PCC-01-001133 sll1673                                             86   4e-20
SYNE-PCC-01-000242 sll0396                                             79   7e-18
SYNE-PCC-01-002873 slr2098                                             74   2e-16
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    73   5e-16
SYNE-PCC-01-002489 slr1588                                             72   6e-16
SYNE-PCC-01-002788 slr1982                                             71   1e-15
SYNE-PCC-01-002879 slr2104                                             69   7e-15
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    69   7e-15
SYNE-PCC-01-002672 slr1837                                             68   2e-14
SYNE-PCC-01-002486 slr1584                                             67   3e-14
SYNE-PCC-01-002221 slr1213                                             67   4e-14
SYNE-PCC-01-000523 sll0797                                             65   1e-13
SYNE-PCC-01-001132 sll1672                                             61   1e-12
SYNE-PCC-01-000800 sll1228                                             61   2e-12
SYNE-PCC-01-002618 slr1760                                             60   3e-12
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    60   4e-12
SYNE-PCC-01-002617 slr1759                                             57   4e-11
SYNE-PCC-01-000518 sll0789                                             55   1e-10
SYNE-PCC-01-000877 sll1330                                             51   2e-09
SYNE-PCC-01-000608 sll0921                                             47   3e-08
SYNE-PCC-01-001575 slr0312                                             45   1e-07
SYNE-PCC-01-002778 slr1969                                             43   5e-07
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    43   5e-07
SYNE-PCC-01-001160 sll1708                                             39   8e-06

>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score =  300 bits (769), Expect = 1e-84
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MMENKPGRIRQFASDPGLQCQAERTFMNAVLLVEDSSSQREMISGILKDHGWQVTIACDG 60
           MMENKPGRIRQFASDPGLQCQAERTFMNAVLLVEDSSSQREMISGILKDHGWQVTIACDG
Sbjct: 1   MMENKPGRIRQFASDPGLQCQAERTFMNAVLLVEDSSSQREMISGILKDHGWQVTIACDG 60

Query: 61  VEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGM 120
           VEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGM
Sbjct: 61  VEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGM 120

Query: 121 RQGADAYIAKPFQPMELVGTIKQLLRN 147
           RQGADAYIAKPFQPMELVGTIKQLLRN
Sbjct: 121 RQGADAYIAKPFQPMELVGTIKQLLRN 147


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 99.8 bits (247), Expect = 4e-24
 Identities = 48/120 (40%), Positives = 73/120 (60%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           M  +L+VED     ++I   L+   +   +  DG   L   Q   PDL+VLD+++P+++G
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            EVC RI+  P +K+  ++M ++KGEE DR  G+  GAD Y+ KPF P ELV  ++ LLR
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 97.4 bits (241), Expect = 2e-23
 Identities = 44/113 (38%), Positives = 71/113 (62%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +L+V+D      +IS +L+  G+  T    G EAL+++    PDL++LD++MP M+G EV
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142
           C R+K DP+T+++PVI  ++  E+ D      +GA  Y+ KPF P EL+  +K
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132



 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +LL ED+   +++   +LK  G+ V +  +G EAL  L     D+V++D+ MP M+G   
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 90  CRRI-KSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQ 133
              I +S  +++   +I  ++   E DR   +  G + Y++KP +
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIR 846


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 95.9 bits (237), Expect = 5e-23
 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 3/115 (2%)

Query: 32  LVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCR 91
           +V+D +S R ++   L   G++V  A DG EA+       PDLVVLD++MP+++GY VC+
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 92  RIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            ++   K  ++P+IM ++ G+  DR  G+  GAD Y+ KPF P EL   I+ +LR
Sbjct: 61  ELR---KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLR 112


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 95.9 bits (237), Expect = 5e-23
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 4/120 (3%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           M+ +LLV+D     E++S +L+  G+ V  A +G+EAL+KL N S  LV+LD++MP++NG
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNG 59

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            E  + I+   K  NVPV+M +++GE+ DR  G+  GAD  + KPF   EL+  IK +LR
Sbjct: 60  IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 95.5 bits (236), Expect = 7e-23
 Identities = 46/117 (39%), Positives = 73/117 (62%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +LLV+D  +   ++   L+  G+QVT A +G EAL+ L    PD++V DI+MP M+GY  
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
             +++ +P    +PV+  S+KG+  +R  G+  GAD Y+AKPF+P EL   ++  LR
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR 126


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 90.5 bits (223), Expect = 2e-21
 Identities = 42/118 (35%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 29  AVLLVEDSSSQREMISGILKDHG-WQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGY 87
           ++LLV+D    RE +   L+D G ++V +A +  EA + LQ+  P LV+ DI+MP+++GY
Sbjct: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
           +  ++++ D + +++PV+  +++G   DR  G + G DA+++KPF P EL   ++ LL
Sbjct: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 90.5 bits (223), Expect = 2e-21
 Identities = 39/120 (32%), Positives = 76/120 (63%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           M  +L+++D  +  +++S  L+  G+ V  A DG++         PDL++LD+++P+++G
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           + VC+R++ D +T ++PV+M ++ G+  D+  G   GAD Y+ KPF   E++  ++ LLR
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 89.7 bits (221), Expect = 4e-21
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPD-------LVVLDIVMP 82
           +L+VED  S RE I   L++ G++V    DG +AL  LQ FS D       L++LDI++P
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 83  RMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142
           ++NG +VCR ++      N P+++ S+KG E ++  G+  GAD YI KPF   ELV   +
Sbjct: 93  QVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150

Query: 143 QLLR 146
            ++R
Sbjct: 151 AMIR 154


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 86.3 bits (212), Expect = 4e-20
 Identities = 44/113 (38%), Positives = 68/113 (60%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +LLV+D  +  +++S +L + G+ V     G  AL  LQ   PDL++LDI MP M+GY+V
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142
           C  IK + + +++P+I  S+ G+ FD+      G   YI KPFQ  E+V  I+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 79.0 bits (193), Expect = 7e-18
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           VL+VE+       +   LK  G+ V++A DG++   + Q F PDL++++  +P M+G E+
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           CRR++       +P+I+ ++K +  +R  G+  GAD YI KPF   E    I+  LR
Sbjct: 65  CRRLRE--MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR 119


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 36/108 (33%), Positives = 68/108 (62%)

Query: 30   VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
            +LLVED+   +E+ + +L+D G+ V +A +G+ ALE+L N +  LV++D+ MP M+G E 
Sbjct: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986

Query: 90   CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMEL 137
               I+ +P+   +P++  ++   + DR   ++ G + ++ KP +P EL
Sbjct: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 46.2 bits (108), Expect = 5e-08
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKL-----QNFSPDLVVLDIVMPRM 84
           VL+V+D+   R ++  +L+   + V     G EAL  L     +N    +V +D  MP M
Sbjct: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832

Query: 85  NGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144
           +G EV RR+K+        + + ++ G E         G D  + KP  P  L  ++ ++
Sbjct: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892

Query: 145 L 145
           L
Sbjct: 893 L 893


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 72.8 bits (177), Expect = 5e-16
 Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +L+VED    R  + GI +  G+ V  A +GVE    L N + +LVV+DI +P  NG  +
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
            R ++ +    ++P+I  + +  E D+  G+  GAD Y+ KPF P EL    + LL
Sbjct: 66  ARELREE---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLL 118


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 72.4 bits (176), Expect = 6e-16
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFS--PDLVVLDIVMPRM 84
           M+ +L+VED +  RE+I   L    +++  A +G  AL  L +    PDL++ D++MP M
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 85  NGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144
           +G+ +   ++ + KT  +P I  ++ G   D   GM  GAD Y+ KPF+  +L+  +   
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120

Query: 145 LR 146
           L+
Sbjct: 121 LQ 122


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 71.2 bits (173), Expect = 1e-15
 Identities = 38/119 (31%), Positives = 67/119 (56%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           M  VLLVED+   R+M+S  L   G++V IA DG +A+    + SP L+++D+ +P ++G
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
           +   ++IK  P   ++P+I  ++     DR   +  G D Y  KP +   L+  ++ L+
Sbjct: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 68.9 bits (167), Expect = 7e-15
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query: 29  AVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYE 88
           ++LLVED+   RE    +L   G +V +A +G EAL  L + + D +++DI MP +NGY+
Sbjct: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778

Query: 89  VCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTI 141
             R I+     +N+P+I  ++     D+   +  G + ++ KP +P  L  T+
Sbjct: 779 ATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 68.9 bits (167), Expect = 7e-15
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +L+VED  + REMI+  L    + V  A D   A+ K++  +P L++LD ++P  +G + 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQF 63

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            + IK       +P+IM ++K  E D    +  GAD YI KPF P  L+  I+ + R
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 67.8 bits (164), Expect = 2e-14
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           M  +LLV+D ++  E +S  L   G  + +A  G   L        DL++LD ++P+++G
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            E+CR+I+      + PV+  ++K    DR  G+  G D Y+ KPF+  EL+  ++ LLR
Sbjct: 61  LEICRQIRI--LGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLR 118


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 67.0 bits (162), Expect = 3e-14
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +LLVED     E ++  L D  + V IA D   A +       DLV+LD+++P ++G  +
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           C++ +S   +  +P++M +++    D+  G+  GAD Y+ KP    EL   ++ LLR
Sbjct: 63  CQKWRS--HSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 66.6 bits (161), Expect = 4e-14
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 9/122 (7%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQV-TIACDGVEALEKLQNFSPDLVVLDI-VMPRMNGY 87
           +L+VED     + I+ +LK  G+++  IA DG  AL+K+  F PDLV+LDI +   ++G 
Sbjct: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64

Query: 88  EVCRRIKSDPKTKNVPVIMCS--SKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
           EV  RIKS     ++P++  +  S GE  +R    +     Y+ KPF+  +L+ T+   +
Sbjct: 65  EVAERIKS---LYSIPIVYLTAFSDGETLER--AQKTNPQGYVIKPFRREQLLSTVAIAI 119

Query: 146 RN 147
            N
Sbjct: 120 AN 121


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 64.7 bits (156), Expect = 1e-13
 Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 4/119 (3%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPD--LVVLDIVMPRMNGY 87
           +LLVED +     I  +L    + V    DG +A + L+N   +  L ++D ++P ++G 
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           E+C+++++  +  ++PV+M ++ GE  +R  G+  GAD Y+ KPF   EL+  ++ L R
Sbjct: 63  ELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 30/104 (28%), Positives = 59/104 (56%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +L+V+D S  R+++  +L   G+++  A +G EA+   +++ P L+ +D+ MP M+GYE 
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQ 133
            + IK   K     V+  ++   E ++   +  G D ++ KPF+
Sbjct: 692 TKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFR 735


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 60.8 bits (146), Expect = 2e-12
 Identities = 31/116 (26%), Positives = 67/116 (57%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           VL+V+D    R ++  +L   G+ V  A +G  A+   +++ P ++++D+ MP ++G   
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
            ++IK+ P+ ++  +I  ++   E +R   +  G D +++KPF+P EL+  + + L
Sbjct: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHL 535


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 60.1 bits (144), Expect = 3e-12
 Identities = 35/116 (30%), Positives = 58/116 (50%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +L+V+D    R  +   L+  G +V +A +G EAL K     P++V+LD VMP M+G+  
Sbjct: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
           C+ +    +  +  V+M +   +E         GA  Y+ KP     L   +K+LL
Sbjct: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 59.7 bits (143), Expect = 4e-12
 Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           +LL+ED +     +   L   G+ V    DG   +  L +   D VVLD+ +P+++G EV
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
            ++ +S+ +  +VPV++ +++    +R  G++ GAD Y+ KPF   E+   ++ L+R
Sbjct: 63  LQQWRSNHQ--DVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIR 117


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 56.6 bits (135), Expect = 4e-11
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 30   VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
            +LL ED+   +++   +L + G+ V IA +G E ++ L+    DLV++D+ MP M+G   
Sbjct: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251

Query: 90   CRRIKSD-PKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMEL 137
            CR I+   P  +   ++  ++     DR   +  G D YI+KP    +L
Sbjct: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQN--FSPDLVVLDIVMPRMNGY 87
           +LLVED       +   L+   + V    DG  A   L     +  L + D ++P ++G 
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           E+C++++   +  ++P++M ++K +  DR  G+  GAD Y+ KPF   EL+  ++ L R
Sbjct: 63  ELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQR 119


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 51.2 bits (121), Expect = 2e-09
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89
           + +VE +   R ++S  L+  G+ V       +A +   N  P L V+D  +   +G E+
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
           CR +    ++    + + S+K  E D   G++ GAD Y+ KPF   E +  I+ L+R
Sbjct: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIR 119


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 47.0 bits (110), Expect = 3e-08
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 30  VLLVEDSSSQREMISGILK---DHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86
           + L+ED    R+ +   L       W V  A +G   L  +Q   PD+V++DI +P MNG
Sbjct: 6   IALIEDEDLIRQGLQDALTMEPSFEW-VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIK 142
            +V +++K  P      V++ +   +E         GADAY  K  +   L+  I+
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 45.1 bits (105), Expect = 1e-07
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 30  VLLVEDSSSQREMISGIL-KDHGWQVTIACD-GVEALEKLQNFSPDLVVLDIVMPRMNGY 87
           VL+ +D +  R+ ++ I+ +D   QV    + G +A+   +   PD+ ++D+ MP + G 
Sbjct: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGV 68

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146
                I +  K   + V+      E+  R  G++ GA  Y+ K  +P EL+  I+ + R
Sbjct: 69  AAISAICAIVKFARIIVLTTYDSDEDIYR--GLQAGAKGYLLKETEPDELLNAIRTVHR 125


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 42.7 bits (99), Expect = 5e-07
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 22  AERTFMNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVM 81
           A   F ++V+++E       +I  +L    +QV    D   AL++++   P L+++D   
Sbjct: 624 AAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDF 683

Query: 82  PRMNGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTI 141
             +   EV R IK   +   V V + S      +     ++G D Y+ KP QP  L+  +
Sbjct: 684 VDVT--EVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRV 741

Query: 142 KQL 144
           + +
Sbjct: 742 QSI 744


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 42.7 bits (99), Expect = 5e-07
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 30  VLLVEDSSSQREMISGI--LKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGY 87
           VLL++D    R  I  +  L D+   V     G E +      SPD+++LD+ M  ++G 
Sbjct: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144
           +  + ++++     + ++  S    + D +  +  GAD Y+ K  +P  L+  IK++
Sbjct: 67  DTLKGLRAEGVDARILILTVSD--AKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRI 121


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 38.9 bits (89), Expect = 8e-06
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 30  VLLVEDSSSQREMISGILKDHG-WQVTIACD-GVEALEKLQNFSPDLVVLDIVMPRMNGY 87
           +L+VED    +  +   L  H  +++    D G  A+++    +PDL+V+DI +P ++G 
Sbjct: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGI 78

Query: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAK 130
           E  ++IK    +  + +++ +S     +    +  GADAY  K
Sbjct: 79  EATKQIKQ--TSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,520
Number of Sequences: 78
Number of extensions: 539
Number of successful extensions: 58
Number of sequences better than 1.0e-05: 33
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 36
length of query: 147
length of database: 48,235
effective HSP length: 56
effective length of query: 91
effective length of database: 43,867
effective search space:  3991897
effective search space used:  3991897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002220 slr1212 
         (844 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002220 slr1212                                           1624   0.0  
SYNE-PCC-01-000542 sll0821                                            143   2e-36
SYNE-PCC-01-000983 sll1473                                            141   7e-36
SYNE-PCC-01-002617 slr1759                                            140   2e-35
SYNE-PCC-01-002778 slr1969                                            126   3e-31
SYNE-PCC-01-001517 slr0222                                            104   1e-24
SYNE-PCC-01-001690 slr0473                                             57   2e-10
SYNE-PCC-01-002879 slr2104                                             45   7e-07
SYNE-PCC-01-002873 slr2098                                             45   7e-07
SYNE-PCC-01-000891 sll1353                                             45   9e-07

>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score = 1624 bits (4205), Expect = 0.0
 Identities = 824/844 (97%), Positives = 824/844 (97%)

Query: 1   MAITAFTLGDFFQANSYIPHGHCYLWQTPLVWLHVSADFFTAIAYYSIPLTLLYFLRKRQ 60
           MAITAFTLGDFFQANSYIPHGHCYLWQTPLVWLHVSADFFTAIAYYSIPLTLLYFLRKRQ
Sbjct: 1   MAITAFTLGDFFQANSYIPHGHCYLWQTPLVWLHVSADFFTAIAYYSIPLTLLYFLRKRQ 60

Query: 61  DIPFPNIIFLFSTFILCCGTSHFFDIITLWYPIYWISGTVKASMAIVSIITVFELIQIVP 120
           DIPFPNIIFLFSTFILCCGTSHFFDIITLWYPIYWISGTVKASMAIVSIITVFELIQIVP
Sbjct: 61  DIPFPNIIFLFSTFILCCGTSHFFDIITLWYPIYWISGTVKASMAIVSIITVFELIQIVP 120

Query: 121 NALNLKSPTELATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQE 180
           NALNLKSPTELATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQE
Sbjct: 121 NALNLKSPTELATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQE 180

Query: 181 IEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMI 240
           IEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMI
Sbjct: 181 IEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMI 240

Query: 241 GSHXXXXXXXXXXXXXXXXXXXXRQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNV 300
           GSH                    RQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNV
Sbjct: 241 GSHITKLIPEELILEEDLIAECIRQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNV 300

Query: 301 VGASKIVRDITARLDVENALRESQYFIEKLANYSPQILYILDPIAWKNIYVNYQSFEILG 360
           VGASKIVRDITARLDVENALRESQYFIEKLANYSPQILYILDPIAWKNIYVNYQSFEILG
Sbjct: 301 VGASKIVRDITARLDVENALRESQYFIEKLANYSPQILYILDPIAWKNIYVNYQSFEILG 360

Query: 361 YTPEEFKNGGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRHKNGSWRWLRS 420
           YTPEEFKNGGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRHKNGSWRWLRS
Sbjct: 361 YTPEEFKNGGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRHKNGSWRWLRS 420

Query: 421 REVVFARDDYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIRQSLDLPTIF 480
           REVVFARDDYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIRQSLDLPTIF
Sbjct: 421 REVVFARDDYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIRQSLDLPTIF 480

Query: 481 NTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIEETCFSNNYAQ 540
           NTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIEETCFSNNYAQ
Sbjct: 481 NTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIEETCFSNNYAQ 540

Query: 541 RYQQGRIQVIEDIHQSHLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVW 600
           RYQQGRIQVIEDIHQSHLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVW
Sbjct: 541 RYQQGRIQVIEDIHQSHLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVW 600

Query: 601 EQTEIDLLKQITNQFEIAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRV 660
           EQTEIDLLKQITNQFEIAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRV
Sbjct: 601 EQTEIDLLKQITNQFEIAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRV 660

Query: 661 KNNLQIMSSLLYLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLANIDFSQYLKN 720
           KNNLQIMSSLLYLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLANIDFSQYLKN
Sbjct: 661 KNNLQIMSSLLYLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLANIDFSQYLKN 720

Query: 721 LTHNICQSYGCNTDSIKIKLLVEQVKVPLEQSIPLGLIIQELVSNALKHAFPTTEGEISI 780
           LTHNICQSYGCNTDSIKIKLLVEQVKVPLEQSIPLGLIIQELVSNALKHAFPTTEGEISI
Sbjct: 721 LTHNICQSYGCNTDSIKIKLLVEQVKVPLEQSIPLGLIIQELVSNALKHAFPTTEGEISI 780

Query: 781 KFTSMNSHYSLQVWDNGVGISRDIDLENTDSLGMQLIYSLTEQLQGELHYEYVGGAQFGL 840
           KFTSMNSHYSLQVWDNGVGISRDIDLENTDSLGMQLIYSLTEQLQGELHYEYVGGAQFGL
Sbjct: 781 KFTSMNSHYSLQVWDNGVGISRDIDLENTDSLGMQLIYSLTEQLQGELHYEYVGGAQFGL 840

Query: 841 EFSL 844
           EFSL
Sbjct: 841 EFSL 844


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score =  143 bits (361), Expect = 2e-36
 Identities = 71/180 (39%), Positives = 115/180 (63%), Gaps = 3/180 (1%)

Query: 450  EQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSV 509
            ++RL ++  +E L+ +I  +IR SL++  I  + V E+RQFL  DRVV+F+F+  S +S 
Sbjct: 914  KERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFN--SQWS- 970

Query: 510  GNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQVIEDIHQSHLRQCHIDFLARL 569
            G +V ES     + IIN  I++ CF  +Y + Y++GR++ + DI ++ L  CH + L   
Sbjct: 971  GQVVTESHNDFCRSIINDEIDDPCFKGHYLRLYREGRVRAVSDIEKADLADCHKELLRHY 1030

Query: 570  QVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFEIAIQQATLYEQAQ 629
            QV+ANLV+P++ +  LWGLL  H+C + R W++ ++ LL ++  Q  IAI Q  LYEQ +
Sbjct: 1031 QVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLLMELATQVAIAIHQGELYEQLE 1090



 Score = 70.1 bits (170), Expect = 3e-14
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 27/195 (13%)

Query: 460 ESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLA 519
           E  LR +  +  ++L L      +V+E R FL  DRV I++F+ D     G ++AE+V  
Sbjct: 8   EDFLRNVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFASDGS---GEVLAEAVNR 64

Query: 520 -----------PFKPIINSAIEET-----CFSNNYAQRYQQ-----GRIQVIEDI--HQS 556
                      P + I   A EE        + + A R ++     GRI   E    H +
Sbjct: 65  AALPSLLGLHFPVEDIPPQAREELGNQRKMIAVDVAHRRKKSHELSGRISPTEHSNGHYT 124

Query: 557 HLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFE 616
            +  CHI +L  + V ++L +P++ D  LWG++ +H     R  EQ E + +  ++ +  
Sbjct: 125 TVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHHSKPRRFTEQ-EWETMALLSKEVS 183

Query: 617 IAIQQATLYEQAQQE 631
           +AI Q+ L  Q  Q+
Sbjct: 184 LAITQSQLSRQVHQQ 198


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score =  141 bits (356), Expect = 7e-36
 Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 29/239 (12%)

Query: 450 EQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSV 509
           E  + +Q +RE  + +ITQ IRQSL+L T+ NT V E++  L+ DRV+I++   D     
Sbjct: 33  EISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDG---T 89

Query: 510 GNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQVIEDIHQSHLRQCHIDFLARL 569
           G+ + ESV A +  I+     +  F   Y Q Y +G+++ I DI Q  +  C  DF+ + 
Sbjct: 90  GSAITESVNANYPSILGRTFSDEVFPVEYHQAYTKGKVRAINDIDQDDIEICLADFVKQF 149

Query: 570 QVRANLVLPLIND------------AILWGLLCIHQCDSSRVWEQTEIDLLKQITNQFEI 617
            V++ LV+P++                LWGLL  HQC  +R W+  E++L+KQ+ NQ  I
Sbjct: 150 GVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPWEVELMKQLANQVAI 209

Query: 618 AIQQATLYEQAQ--------------QELASKNQLFVQLTNELEQKKVLLKEIHHRVKN 662
           AIQQ+ LYEQ Q              Q+LA+ NQ      +E ++ +  L+  +H +++
Sbjct: 210 AIQQSELYEQLQQLNKDLENRVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQS 268



 Score = 95.9 bits (237), Expect = 4e-22
 Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 128 PTELATLNLALNQEIKERQTAEI--ALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKT 185
           P E+  +    NQ     Q +E+   LQ+LN +LE RVE RT QLA  NQ L  EI ++ 
Sbjct: 194 PWEVELMKQLANQVAIAIQQSELYEQLQQLNKDLENRVEKRTQQLAATNQSLRMEISERQ 253

Query: 186 RAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMIGSHXX 245
           + +  L      L  L A   +S   I +  L   I  WN +AER+FG+T  E+I +H  
Sbjct: 254 KTEAALRHTNHTLQSLIA---ASPRGIFTLNLADQIQIWNPTAERIFGWTETEII-AHPE 309

Query: 246 XXXXXXXXXXXXXXXXXXRQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNVVGASK 305
                               G    + E + Q+KDG+ I++ L+ +P+ D  +N+ G   
Sbjct: 310 LLTSNILLEDYQQFKQKVLSGMVSPSLELKCQKKDGSWIEIVLSAAPLLDSEENIAGLVA 369

Query: 306 IVRDITARLDVENALRESQYFIEKLANYSPQILYI----LDPIAWKNIYVNYQSFEILGY 361
           +V DIT +      +R  Q  +    N +  ++      +D    + +YVN    +I GY
Sbjct: 370 VVADITEQKRQAEQIRLLQSVV---VNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGY 426

Query: 362 TPEE 365
           T EE
Sbjct: 427 TAEE 430


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  140 bits (352), Expect = 2e-35
 Identities = 127/471 (26%), Positives = 212/471 (45%), Gaps = 18/471 (3%)

Query: 171 AKINQQLEQEIEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAER 230
           +K ++QL + I+ + + +E L+    +LA     ++ +    I+ T +G IT  N+    
Sbjct: 304 SKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDT-EGVITYVNDKFVE 362

Query: 231 LFGYTAEEMIGSHXXXXXXXXXXXXXXXXXXXXRQGQRINTYETQRQRKDGTKIDVALTI 290
           + GY+ EE+IG+                      +  ++   +   + K G    V  T+
Sbjct: 363 VSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQINNRAKAGNTYWVDSTV 422

Query: 291 SPIRDEHKNVVGASKIVRDITARLDVENALRESQYFIEKLANYSPQILYILDPIAWKNIY 350
            P  D++ N      I  +IT+    E +LRES+     +A+ SP +L++ D    K  +
Sbjct: 423 VPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDK-KMTF 481

Query: 351 VNYQSFEILGYTPEEFKNGGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRH 410
           VN    E  G T  E    G    L  +HPDD    +    + Q   + +    EYR R 
Sbjct: 482 VNQSWLEFRGATLAEESGNG---YLEGIHPDDKG--HYLGVYSQAFGDRRRFELEYRYRR 536

Query: 411 KNGSWRWLRSREVVFARDDYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRI 470
            +  +RW+ +  V    +D G+    +G+  DI+D K+ +  L ++  +  L+R+I+Q I
Sbjct: 537 VDQQYRWIVNVGVPRYLED-GKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEI 595

Query: 471 RQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIE 530
           R+SL    IF T  +++       R +I  +S  +   V  +VAE +   F  ++     
Sbjct: 596 RRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQVP-VVAEYLGGQFTSLLAG--- 651

Query: 531 ETCFSNNYAQRYQQG-RIQVIEDIHQSHLRQCHID-FLARLQVRANLVLPLINDAILWGL 588
           E      Y     QG R   + D+ Q  L   H   F  R QV++ L +         G+
Sbjct: 652 EIAVEQAYDPTIIQGDRAMAVVDLDQD-LNSTHTKAFYQRFQVKSFLAVRTSYQGKANGI 710

Query: 589 LCIHQCDSSRVWEQTEIDLLKQITNQFEIAIQQATLYE---QAQQELASKN 636
           + +HQCD  RVW   EI+LL+ I  Q  IA+ QA L E   + ++ELA KN
Sbjct: 711 IALHQCDRQRVWTADEIELLEAIAEQMGIALAQAALLEKERERRRELAQKN 761


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  126 bits (316), Expect = 3e-31
 Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 60/399 (15%)

Query: 456 QGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQF-------------- 501
           Q  +  LL ++  +IRQSLDL  I N  V  +++FL  DR+VI+QF              
Sbjct: 155 QASQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQ 214

Query: 502 --SPDSDFSVGNIVAESVLAP-FKPIINSAIEETCFSN--NYAQRYQQGRIQVIEDIHQS 556
             +P      G +  E+  +P    ++    E  CFS   +Y Q+Y +G +  + DI   
Sbjct: 215 IPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENH 274

Query: 557 HLRQ-CHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQF 615
           +    C +  L R QVRA LV P+I +  LWGLL  HQC   R W  +E + L QI    
Sbjct: 275 YSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFLGQIGEHL 334

Query: 616 EIAIQQATLYEQAQQELASKNQLFVQLTNELEQ-----------KKVLLKEIHHRVKNNL 664
            +AI Q+ LY + Q++  +  +  ++ T EL             K   +  I H ++  L
Sbjct: 335 AVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPL 394

Query: 665 Q--IMSSLLYLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLAN--IDFSQYLKN 720
              I  S   L++     ++    ++Y      +  I E   +  D  N  I  SQ    
Sbjct: 395 TSIIGLSATLLRWFDHPASLPPAKQQYY-----LLNIQENGKKLLDQINSIIQLSQLESG 449

Query: 721 LTHNICQSYGCNT------DSIKIKLLVEQVKVPLEQSIPLG------------LIIQEL 762
            T   CQS+  +T       S+    + +Q+ + L+  I +G             I+ +L
Sbjct: 450 QTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQL 509

Query: 763 VSNALKHAFPTTEGEISIKFTSMNSHYSLQVWDNGVGIS 801
           ++NALK  F   EG + ++    ++    QV D G+GI+
Sbjct: 510 LNNALK--FTPAEGTVILRIWKESNQAIFQVEDTGIGIN 546


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  104 bits (260), Expect = 1e-24
 Identities = 159/692 (22%), Positives = 278/692 (40%), Gaps = 118/692 (17%)

Query: 141  EIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAKEDLEKNKDQLAQ 200
            +I ER+ AEI L+ +N NLE  +E+RT++L   N QL QEI +K +    L     Q A+
Sbjct: 496  DITERKLAEIQLKTINENLEVLIEERTSELESSNSQLLQEIIEKEQVSITL---TTQEAK 552

Query: 201  LAAIVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMIGSHXXXXXXXX--XXXXXXX 258
              A+V  + DAII  T+D  +   N  A  L GY  EE+IG                   
Sbjct: 553  YRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFYAQQRH 612

Query: 259  XXXXXRQGQRINTYETQRQRKDGTKIDVALTISPIRDEHKNVVGASKIVRDITARLDVEN 318
                 ++ Q     + +  +K G  I V ++ S I  E+ ++V    IV DIT +  ++ 
Sbjct: 613  FWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQC--IVHDITLQKTIQA 670

Query: 319  ALRESQYF----IEKLAN-----YSPQILYILDPIAWKNIYVNYQSFEILGYTPEEFKN- 368
             L+   YF    +EK+       Y  +    L    W  +  N     I GY+ EE    
Sbjct: 671  QLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKN-----ITGYSQEEINQC 725

Query: 369  GGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRMRHKNGSWRWLRSREVVFARD 428
            G  E L +   P +   +         +    ++  E+++  ++G+   LR+ E+  A  
Sbjct: 726  GWYETLYSHGQPQEAVRV----RMKAVALGVDMVKEEWQIIRRDGA---LRTVEISTALI 778

Query: 429  DYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIRQSLDLPTIFNTVVQEIR 488
                 T +L   QDI+D K Q Q +      E+ LR I + +     + TI  +    I 
Sbjct: 779  TSNNQTNILAVIQDITDQKRQLQIIQ---NNEATLRCIVENLPIFFGMRTINFSNWYYIN 835

Query: 489  QFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSAIEETCFSNNYAQRYQQGRIQ 548
               E+    +  ++PD  +               P++   I        YA+  +Q R  
Sbjct: 836  PSFES----LTGYTPDEMYE-------------DPLLWQKIHR----EEYAENLEQARPN 874

Query: 549  VIEDIHQSHLRQCHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLL 608
            + E                                  W +  + + D +++W QT   L+
Sbjct: 875  LGE----------------------------------WTIFSMEKKDGTQIWAQTVEFLV 900

Query: 609  KQITNQFEIAIQQATLYEQAQQELASKNQLFVQLTNELEQKKVLLKEIHHRVKNNLQIM- 667
              +++   + +    + +  + E+ +   L V+     E K   +  + H  +  L  + 
Sbjct: 901  DDLSDTARVVVFGQDITDIKRAEIETLRSL-VKERELNEAKSQFVDIVSHEFRTPLTSII 959

Query: 668  --SSLLYLQFSKASPAIQQLSEEYQNRIQSMA-----LIHEQLYRSE--------DLANI 712
                LL   F + S    +  ++Y N IQ+ +     LI + L  S         +L NI
Sbjct: 960  GFGELLSKYFDRLS---TEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNI 1016

Query: 713  DFSQYLKNLTHNICQSYGCNTDSIKIKLLVEQVKVPLEQSIP----LGLIIQELVSNALK 768
            +    L+NL +++ +++ C   S     L   +K P E S+     L  I++ ++SNA+K
Sbjct: 1017 N----LRNLANDLIENFSCGLGSEHNFELNYHLK-PDEHSLVDVRLLRHILENILSNAIK 1071

Query: 769  HAFPTTEGEISIKFTSMNSHYSLQVWDNGVGI 800
            ++ P +   I++  +    H   QV D G+GI
Sbjct: 1072 YSAPGS--TITLDISKDEEHLLFQVRDEGIGI 1101


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 469 RIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSA 528
           R+RQ  +L   ++ +V+E+R+    DRV++++F  ++    G+++AE      +P +   
Sbjct: 146 RLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNH---GDVIAEDKRDDMEPYLGLH 202

Query: 529 IEETCFSNNYAQRYQQGRIQVIEDIH---------------------QSHLRQ---CHID 564
             E+       + +    I+VI D++                     +S LR    CH+ 
Sbjct: 203 YPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLT 262

Query: 565 FLARLQVRANLVLPLINDAILWGLLCIH 592
           +L  + V A+L + LI D  LWGL+  H
Sbjct: 263 YLKNMGVGASLTISLIKDGHLWGLIACH 290


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 131 LATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAKED 190
           L  L+    Q++ E Q A+I+L+ LN  LE+R+++RT +L    + L   +E K  A+  
Sbjct: 398 LPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTQELENSQESL---LEAKLVAEGA 454

Query: 191 LEKNKDQLAQLAAIVESSQDAIISKT---LDGNITSWNESAERLFGYTAEEMIG 241
            +   + LA ++  + +  +AII  +   L  ++TS   +  +   Y  E ++G
Sbjct: 455 TKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGELLLG 508


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 70/312 (22%), Positives = 123/312 (39%), Gaps = 51/312 (16%)

Query: 204 IVESSQDAIISKTLDGNITSWNESAERLFGYTAEEMIGSHXXXXXXXXXXXXXXXXXXXX 263
           I+E + + I+     GNI   N S E+LFGY+  E+IG                      
Sbjct: 275 IIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQTELIGQ---SIALLGLAELLQQSLHLL 331

Query: 264 RQGQRI--------NTYETQRQRKDGTK--IDVALTISPIRDEHKNVVGASKIVRDITAR 313
           ++G+ +          +E    R DG++  I+V+LT  P   + +  + AS  VRDI+AR
Sbjct: 332 QEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLSQREMNIFAS--VRDISAR 389

Query: 314 LDVENALRESQYFIEKLANYSPQILYILDPIAWKNIYVNYQSFEILGYTPEEFKNGGTEL 373
            + +  +   +  ++ + + +P  + I                 + G T  +F N     
Sbjct: 390 QEAQQQILRQREHLQSVLDSAPVGVAI----------------TVNGIT--QFANPHIGE 431

Query: 374 LLNIVHPDDIPTLYENKNFWQK-----SQEGQVLTTEYRMRHKNGSWRWLRSREVVFARD 428
           L+++   D    +Y +    Q+     +Q G+  +  Y+M +  G    +R     F   
Sbjct: 432 LVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGE---IRDILATFLAT 488

Query: 429 DYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQRIR------QSLDLPTIFNT 482
           DY     +LG   DI+  K  E  +    +R   L E   RI+       S ++ T  N 
Sbjct: 489 DYEGQKGILGWLADITPIKAAEAEM----KRAKELAEEASRIKADFLANMSHEIRTPMNA 544

Query: 483 VVQEIRQFLEAD 494
           V+      L+ D
Sbjct: 545 VIGMTHLALKTD 556


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score = 45.1 bits (105), Expect = 9e-07
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 129 TELATLNLALNQEIKERQTAEIALQELNNNLEKRVEDRTTQLAKINQQLEQEIEDKTRAK 188
           +E+ TLN   N+ +   Q     +++  +NLE RV +RT  L  IN+QL  EIE++ R +
Sbjct: 524 SEVITLNENFNEMLITLQNQFKIIKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIE 583

Query: 189 EDLEKNKDQLAQLAAIVESSQDAIIS 214
             L + K+  A+LA  V+S   A IS
Sbjct: 584 IKLREAKES-AELANRVKSEFLANIS 608


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,457
Number of Sequences: 78
Number of extensions: 3882
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 25
length of query: 844
length of database: 48,235
effective HSP length: 70
effective length of query: 774
effective length of database: 42,775
effective search space: 33107850
effective search space used: 33107850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002221 slr1213 
         (241 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002221 slr1213                                            474   e-136
SYNE-PCC-01-001306 sll1905                                             73   1e-15
SYNE-PCC-01-002086 slr1042                                             67   7e-14
SYNE-PCC-01-000414 sll0649                                             66   9e-14
SYNE-PCC-01-000242 sll0396                                             64   3e-13
SYNE-PCC-01-002489 slr1588                                             63   1e-12
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    61   3e-12
SYNE-PCC-01-001133 sll1673                                             60   8e-12
SYNE-PCC-01-002033 slr0947                                             58   3e-11
SYNE-PCC-01-001075 sll1592                                             57   5e-11
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   56   1e-10
SYNE-PCC-01-002618 slr1760                                             54   4e-10
SYNE-PCC-01-001160 sll1708                                             53   8e-10
SYNE-PCC-01-002672 slr1837                                             52   2e-09
SYNE-PCC-01-001575 slr0312                                             52   2e-09
SYNE-PCC-01-002788 slr1982                                             50   5e-09
SYNE-PCC-01-001461 slr0115                                             50   5e-09
SYNE-PCC-01-000523 sll0797                                             49   1e-08
SYNE-PCC-01-002731 slr1909                                             49   1e-08
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    47   6e-08
SYNE-PCC-01-001437 slr0081                                             47   7e-08
SYNE-PCC-01-000608 sll0921                                             43   8e-07
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    43   1e-06
SYNE-PCC-01-000800 sll1228                                             42   2e-06
SYNE-PCC-01-002879 slr2104                                             41   3e-06
SYNE-PCC-01-001132 sll1672                                             40   5e-06
SYNE-PCC-01-002617 slr1759                                             40   9e-06

>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score =  474 bits (1220), Expect = e-136
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60
           MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE
Sbjct: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60

Query: 61  IDGIEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120
           IDGIEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA
Sbjct: 61  IDGIEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120

Query: 121 NHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQKE 180
           NHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQKE
Sbjct: 121 NHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQKE 180

Query: 181 MGCSPYQFIIQQRVERAKAILLERELSISEVALRCGFSSHSQLNHHFRNLLGITPKEYRS 240
           MGCSPYQFIIQQRVERAKAILLERELSISEVALRCGFSSHSQLNHHFRNLLGITPKEYRS
Sbjct: 181 MGCSPYQFIIQQRVERAKAILLERELSISEVALRCGFSSHSQLNHHFRNLLGITPKEYRS 240

Query: 241 R 241
           R
Sbjct: 241 R 241


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 22/186 (11%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           IL+V+D +     I++LL+ +GY    + S G  AL+++ +  PDL+LLD+ + G +DG+
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTS-GPEALQRVTQAQPDLILLDLMMPG-MDGL 77

Query: 65  EVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIAN 121
           EV +R+K       IP+++LTA ++ + L +A       YV KPF   +LL+ V   +  
Sbjct: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLEL 137

Query: 122 HQ----------QQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTA 171
            Q          +Q +  E    TST        L  + +++  G+ +    G I +   
Sbjct: 138 KQTRDNLHHTLLEQARTAEALACTST-------RLGILVQNMQAGVLMTDAQGTIVVVNP 190

Query: 172 YFCRFF 177
            F R F
Sbjct: 191 EFARLF 196



 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           IL+ ED  +  Q    LLK  GY + V+ ++G  AL  +A+   D+VL+D+ +  E+DG+
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVV-NNGQEALSALAKGDYDVVLMDVEMP-EMDGL 799

Query: 65  EVAERIKSLYSIP----IVYLTAFSDGETLERAQKTNPQGYVIKPFRRE---QLLSTVAI 117
              E I+          I+ +TA+S     ER   +    YV KP R E   Q L   A 
Sbjct: 800 TATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAAT 859

Query: 118 AIANHQQQR 126
           A+ +  Q R
Sbjct: 860 ALQSTSQDR 868


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 66.6 bits (161), Expect = 7e-14
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 9/122 (7%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           +L+VED     + I+ +LK  G+++  IA DG  AL+K+  F PDLV+LDI +   ++G 
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQV-TIACDGVEALEKLQNFSPDLVVLDI-VMPRMNGY 87

Query: 65  EVAERIKS---LYSIPIVYLTAFSDGETLER--AQKTNPQGYVIKPFRREQLLSTVAIAI 119
           EV  RIKS     ++P++  +  S GE  +R    +     Y+ KPF+  +L+ T+   +
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCS--SKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145

Query: 120 AN 121
            N
Sbjct: 146 RN 147


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 66.2 bits (160), Expect = 9e-14
 Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 5/127 (3%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           ILIVED++ +AQ I + L+ + +  C++ +DG T L+   E  PDL++LD+ +  ++DG+
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFT-CIVTNDGETGLRIFQEQVPDLIVLDLMLP-KLDGL 71

Query: 65  EVAERIKSLYSIPIVY-LTAFSDGETLER--AQKTNPQGYVIKPFRREQLLSTVAIAIAN 121
           EV  RI+        Y L   + GE ++R     T    Y++KPF   +L++ V   +  
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 122 HQQQRKP 128
             +Q +P
Sbjct: 132 QLRQGQP 138


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60
           M  ++L+VE+E  +A+ +   LK +GY++ V A DG     +  EF PDL++++  + G 
Sbjct: 1   MSHRVLVVEEEEKLARFMELELKYEGYDVSV-ARDGLKGFTQAQEFPPDLIIVNGALPG- 58

Query: 61  IDGIEVAERIKSLYS-IPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAI 119
           + G+E+  R++ + S IPI+ +TA  D E            Y++KPF  ++  + + + +
Sbjct: 59  MSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQL 118


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 62.8 bits (151), Expect = 1e-12
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKI--AEFYPDLVLLDIRIKG 59
           ++ IL+VEDE ++ + I + L  + Y+I + A +GA AL  +   E  PDL++ D+ +  
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKI-LEAENGAVALGLLNSLEVMPDLIICDVMMP- 58

Query: 60  EIDG---IEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           E+DG   I   ++     +IP ++LTA    +   +   +    Y+IKPF++E LL+ V
Sbjct: 59  EMDGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 1   MVTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGE 60
           M  KILIVEDE  + + IA  L    Y++ + ASD  TA+ KI E  P L+LLD  + G 
Sbjct: 1   MTRKILIVEDECAIREMIALFLSQKYYDV-IEASDFKTAINKIKE-NPKLILLDWMLPGR 58

Query: 61  IDGIEVAERIK---SLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
             GI+  + IK   S  +IPI+ LTA S  E            Y+ KPF  + LL+ +
Sbjct: 59  -SGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARI 115


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 14/144 (9%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           IL+V+D     Q ++ LL + GY +  + S G  AL+ +    PDL+LLDI++  ++DG 
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTS-GKMALRTLQVKRPDLILLDIKMP-DMDGY 68

Query: 65  EVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV------ 115
           +V E IK    L  IPI++++A  D     +A +     Y+ KPF+ E++++ +      
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTI 128

Query: 116 ---AIAIANHQQQRKPEEDTLSTS 136
               IA+    ++R+  E+ L  S
Sbjct: 129 QRQRIALKREVRKRREAEEVLYQS 152


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 7   IVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGIEV 66
           +V+DE  + + +   L   GYE+ V A+DG  A+    E  PDLV+LD+ +  ++DG  V
Sbjct: 1   MVDDEASIRRILETRLSMIGYEV-VTAADGEEAIATFHESDPDLVVLDVMMP-KLDGYGV 58

Query: 67  AERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQL 111
            + ++    IPI+ LTA  D        +     YV+KPF  ++L
Sbjct: 59  CQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 4   KILIVEDERLVAQH-IAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
           +IL+VED+ L     + +L +  G ++   A DG TA+  + +   D+V+LD+ + G I 
Sbjct: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG-IG 67

Query: 63  GIEVAERIKSLY-SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           GIE   +IK ++  +P++ LT+ S    + R  +   QGY +K    E L+  +
Sbjct: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAI 121


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 55/237 (23%), Positives = 114/237 (48%), Gaps = 32/237 (13%)

Query: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61
           ++K+L+V+D+  + + ++ LL+ +G+++   A++G  AL+K+ E Y  LVLLD+ +  ++
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDV-ETANNGLEALQKLNESYK-LVLLDVMMP-KL 57

Query: 62  DGIEVAERIKSLYSIPIVYLTAFSDGETLER--AQKTNPQGYVIKPFRREQLLSTVAIAI 119
           +GIE  + I+ + ++P++ LTA   GE ++R    +      + KPF   +L++ +   +
Sbjct: 58  NGIETLKEIRKVSNVPVMMLTA--RGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115

Query: 120 ANHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQK 179
              ++   P  +              +  +E     GIT+ F  G           + ++
Sbjct: 116 ---RRSASPSNN--------------ISNVEILSFDGITLHFSHG--------IATYNEE 150

Query: 180 EMGCSPYQFIIQQRVERAKAILLERELSISEVALRCGFSSHSQLNHHFRNLLGITPK 236
            +  + Y+F I   + ++K  ++ RE    EV  +        L+ H  NL    PK
Sbjct: 151 NLNLTDYEFKILCLLLKSKGNVVSREELSLEVMEKPLTPFDRSLDMHISNLRRKLPK 207


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 54.3 bits (129), Expect = 4e-10
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63
           KIL+V+D+  +   +   L+ +G+ +  +A++G  AL K AE  P++VLLD  +   +DG
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRV-ELATNGEEALTKFAEIKPEVVLLD-AVMPVMDG 70

Query: 64  IEVAERIKSLYSIP---IVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120
               + +  +Y  P   ++ +T   D  +++RA +     YV KP     L   V   + 
Sbjct: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130

Query: 121 NHQQQRKPE 129
            ++ Q + E
Sbjct: 131 QNRLQHQLE 139


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)

Query: 4   KILIVEDERLVAQHIAQLLKS-DGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
           KILIVED+ L+   + Q L + + +EI     +G  A+++ A   PDL+++DI + G +D
Sbjct: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPG-LD 76

Query: 63  GIEVAERIKSLY-SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIA 118
           GIE  ++IK     I IV LT+ +    +  A  +    Y +K    E+L+  +A A
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAAA 133


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61
           +  IL+V+DE  + + +++ L   G+ I V A  G T L        DL++LD  +  ++
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDV-ADQGKTGLAMAIAGQYDLLILDWMLP-QV 58

Query: 62  DGIEVAERIKSL-YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120
            G+E+  +I+ L +S P+++LTA    +            Y+IKPF   +LL+ V  A+ 
Sbjct: 59  SGLEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVR-ALL 117

Query: 121 NHQQQRKPEEDTL 133
             Q   +   +TL
Sbjct: 118 RRQSHGETITETL 130


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 4   KILIVEDERLVAQHIAQLLKSD-GYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
           ++LI +D  +  Q +A ++  D   ++   A +G  A+    E  PD+ L+D+R+  E++
Sbjct: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMP-EVE 66

Query: 63  GIEVAERIKSLYSIP-IVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           G+     I ++     I+ LT +   E + R  +   +GY++K    ++LL+ +
Sbjct: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAI 120


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61
           + K+L+VED  +    +++ L   GYE+ VIA DG  A+       P L+L+D+ +   I
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEV-VIAVDGEQAVTMAISESPQLILMDMSLP-II 61

Query: 62  DGIEVAERIKSLYS---IPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIA 118
           DG    ++IK       IPI+ LTA +     ERA       Y  KP   ++LL  +   
Sbjct: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121

Query: 119 I 119
           I
Sbjct: 122 I 122


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63
           +ILI++D+  ++  ++  L+  GY++   A DG        +  PDL++LD+ +  ++DG
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQ-AVDGIKGQALAVQLQPDLIMLDLMLP-KVDG 60

Query: 64  IEVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
             V +R++       IP++ LTA    +   +   +    Y+ KPF  E++L+ V
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARV 115


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 49.3 bits (116), Expect = 1e-08
 Identities = 37/160 (23%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPD--LVLLDIRIKGEI 61
           +IL+VEDE  +   I ++L S+ Y +  + +DG+ A   +   + +  L ++D  + G +
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWV-TDGSQAWDYLENQWTEYTLAIVDWLLPG-L 59

Query: 62  DGIEVAERIKSL-YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120
            G+E+ +++++   S+P++ LTA  + E            Y+ KPF   +LL+ +     
Sbjct: 60  SGLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRAL-- 117

Query: 121 NHQQQRKPEEDTLSTSTGHYRLQPTLDYIEEHLDQGITVE 160
              Q+R P+      + G++ L P+ + +   + + + +E
Sbjct: 118 ---QRRSPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLE 154


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 10/173 (5%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           +L+V+D+  +   +   L+  GY++   A +G  AL  +    PD+++ DI +  E+DG 
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTT-AGNGREALDLLTTTVPDMIVCDIMMP-EMDGY 67

Query: 65  EVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIAN 121
              E+++    +  IP+++L+A        +        Y+ KPF  E+L + V   +  
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ 127

Query: 122 H----QQQRKPEEDTLSTSTGH-YRLQPTLDYIEEHLDQGITVEFLAGAIGMS 169
                Q    P ED           L PT   + + + QG+    +A  + +S
Sbjct: 128 ADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS 180


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 47.0 bits (110), Expect = 6e-08
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63
           KIL+VEDE +    +  + +++GY++   A +G      +A    +LV++DI + G+ +G
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDV-FEAENGVEMHHILANHNINLVVMDINLPGK-NG 62

Query: 64  IEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQL 111
           + +A  ++   S+P+++LT   +        +     Y+ KPF   +L
Sbjct: 63  LLLARELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 14/120 (11%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYP-------DLVLLDIR 56
           +IL+VEDE  + + I   L+ +GYE+  +  DG  AL  + EF         DL++LDI 
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAV-DDGRDALALLQEFSEDPGQAAVDLIILDIM 90

Query: 57  IKGEIDGIEVAERIK-SLYSIPIVYLTAFSDGETLERAQ--KTNPQGYVIKPFRREQLLS 113
           +  +++G++V   ++    + PI+ ++A   G  +E+    +     Y+ KPF  ++L++
Sbjct: 91  LP-QVNGLDVCRSLRFGGDNTPILIVSA--KGSEMEKVTGLEVGADDYITKPFSLKELVA 147


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 43.1 bits (100), Expect = 8e-07
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 4   KILIVEDERLVAQHIAQLLKSD-GYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
           +I ++EDE L+ Q +   L  +  +E    A++G   L  + +  PD+V++DI +  +++
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP-DMN 63

Query: 63  GIEVAERIKS---LYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           GI+V +++K         +V LT     ET+  A       Y +K  R E L+  +
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAI 119


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 42.7 bits (99), Expect = 1e-06
 Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 4   KILIVEDERLVAQHIAQLLK-SDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
           K+L+++D  L+ + I QL++  D +E+    S G   +    +  PD+++LD+ +KG + 
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKG-LS 64

Query: 63  GIEVAERIKSL-YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           G++  + +++      I+ LT       +         GY++K    + LL  +
Sbjct: 65  GLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63
           K+L+V+D       + QLL S G+ +   A +G  A+     ++P ++L+D+++   +DG
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGF-VVQEAENGEMAIALWESWHPQVILMDMQMP-VLDG 476

Query: 64  IEVAERIKSL----YSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVA--I 117
               ++IK+     ++I I    +  +GE  E         ++ KPFR E+L++ +A  +
Sbjct: 477 RSTTQKIKASPQGQHTIIIALTASAFEGERAE-ILSAGCDDFLSKPFRPEELIALLAKHL 535

Query: 118 AIANHQQQRKP 128
           A+A   Q + P
Sbjct: 536 AVALPSQGQPP 546


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 41.2 bits (95), Expect = 3e-06
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 5   ILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGI 64
           IL+VED  +  +    LL S G  + V A++G  AL  +     D +L+DI++   ++G 
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQV-ANNGQEALTLLTSNTYDAILMDIQMP-MLNGY 777

Query: 65  EVAERIKSLY---SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIAN 121
           +    I+      ++PI+ +TA +     E+A       ++ KP + + L  T+A  I  
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPP 837

Query: 122 HQQQRK 127
           +  + K
Sbjct: 838 NSAREK 843


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 40.4 bits (93), Expect = 5e-06
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61
           V KIL+V+D+ +  Q + +LL   G+EI   AS+G  A+     + P L+ +D+R+   +
Sbjct: 629 VYKILVVDDKSVNRQLLIKLLAPFGFEI-EEASNGQEAIALWESWEPHLIFMDMRMP-VM 686

Query: 62  DGIEVAERIKSLY---SIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115
           DG E  + IK      +  +V LTA    E            ++ KPFR   +  ++
Sbjct: 687 DGYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSL 743


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 39.7 bits (91), Expect = 9e-06
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)

Query: 4    KILIVEDERLVAQHIA-QLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEID 62
            +IL+ ED  LV Q +A Q+L + GY +  IA++G   +  + + + DLVL+D+++   +D
Sbjct: 1191 QILLAEDN-LVNQKVAHQMLNNLGYPVA-IANNGQEVIDALEKKFYDLVLMDMQMP-VMD 1247

Query: 63   GIEVAERIKSLYSIP----IVYLTAFSDGETLERAQKTNPQGYVIKPFRREQL 111
            GI     I+    +     IV +TA +     +        GY+ KP    QL
Sbjct: 1248 GITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.322    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,040
Number of Sequences: 78
Number of extensions: 952
Number of successful extensions: 57
Number of sequences better than 1.0e-05: 27
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 28
length of query: 241
length of database: 48,235
effective HSP length: 60
effective length of query: 181
effective length of database: 43,555
effective search space:  7883455
effective search space used:  7883455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002486 slr1584 
         (234 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002486 slr1584                                            463   e-133
SYNE-PCC-01-000518 sll0789                                            162   7e-43
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   162   7e-43
SYNE-PCC-01-000242 sll0396                                            159   8e-42
SYNE-PCC-01-000523 sll0797                                            156   6e-41
SYNE-PCC-01-001461 slr0115                                            153   4e-40
SYNE-PCC-01-002672 slr1837                                            146   5e-38
SYNE-PCC-01-001437 slr0081                                            144   2e-37
SYNE-PCC-01-002033 slr0947                                            133   4e-34
SYNE-PCC-01-000414 sll0649                                            125   1e-31
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                  113   5e-28
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...   108   2e-26
SYNE-PCC-01-000877 sll1330                                            105   2e-25
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    91   3e-21
SYNE-PCC-01-002635 slr1783                                             77   4e-17
SYNE-PCC-01-002489 slr1588                                             71   4e-15
SYNE-PCC-01-002731 slr1909                                             69   1e-14
SYNE-PCC-01-002873 slr2098                                             67   4e-14
SYNE-PCC-01-002086 slr1042                                             67   5e-14
SYNE-PCC-01-001160 sll1708                                             65   1e-13
SYNE-PCC-01-002617 slr1759                                             64   4e-13
SYNE-PCC-01-001306 sll1905                                             62   1e-12
SYNE-PCC-01-002788 slr1982                                             62   2e-12
SYNE-PCC-01-001133 sll1673                                             61   3e-12
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    60   8e-12
SYNE-PCC-01-002618 slr1760                                             56   1e-10
SYNE-PCC-01-002879 slr2104                                             55   2e-10
SYNE-PCC-01-001075 sll1592                                             52   2e-09
SYNE-PCC-01-000608 sll0921                                             47   7e-08
SYNE-PCC-01-001575 slr0312                                             42   2e-06

>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  463 bits (1191), Expect = e-133
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60
           MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60

Query: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120
           TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180
           ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK
Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180

Query: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEKSLCQGKN 234
           LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEKSLCQGKN
Sbjct: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEKSLCQGKN 234


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  162 bits (411), Expect = 7e-43
 Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 4/223 (1%)

Query: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASR--LEYDLVILDVMLPELD 58
           MR+LLVED+  L   L +AL  + Y VD   D +LAW Y  +  + Y L I D M+P L 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118
           G+ LCQK R     +PILM+TA+D I D++ GLDAGADDY++KP  + EL AR+R+L RR
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 119 GCATCQPVLEWGPIRLDPSTYEVSYDNEV-LSLTRKEYSILELLLRNGRRVLSRSMIIDS 177
                   L+ G   LD  T+ V    +  ++LT KE+ +LE  +++ +++LS   I + 
Sbjct: 121 SPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 178 IWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220
           +W L +    + V   VR LR+KL+      + IETV+G+GYR
Sbjct: 181 LWALSAESTSNVVAAQVRLLRRKLEEYS-HGNLIETVYGLGYR 222


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  162 bits (411), Expect = 7e-43
 Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 5/224 (2%)

Query: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60
           MRILL+EDD  +   L   L+   + VD  TD        +   YD V+LD+ LP+LDG+
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120
            + Q+WRS+   +P+L++TARDT+++++ GL +GADDY+ KP  L E+ AR++AL+RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180
                V+E   ++LD +   V  +N+ +SLT +EY +LEL + N  RVLSRS I + +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANL 224
            +       + VH+ +LRQK     L    I TVHG+GY L  +
Sbjct: 181 WDEEISSGALDVHIYNLRQK-----LGKQFIRTVHGVGYALGQV 219


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  159 bits (402), Expect = 8e-42
 Identities = 81/220 (36%), Positives = 136/220 (61%), Gaps = 1/220 (0%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           R+L+VE++  LA  +   L  + Y V +A D    +  A     DL+I++  LP + G+ 
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121
           LC++ R     +PI+++TA+D + +++ GLDAGADDY+VKP +  E FAR+R  LRR   
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 122 TCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWKL 181
           T   VL++  +R + ST E+   + ++ LT KE+ +L+ LL + R+VL+R  I++ +W  
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183

Query: 182 ESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221
           +   + + ++V++R LR KL++AG     I+TV G+GY L
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEAAG-EPRLIQTVRGVGYVL 222


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  156 bits (394), Expect = 6e-41
 Identities = 90/230 (39%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASR--LEYDLVILDVMLPELD 58
           MRILLVED+  L   + + L  + Y VD  TD S AWDY      EY L I+D +LP L 
Sbjct: 1   MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60

Query: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118
           G+ LCQK R+    +P+LM+TA     +++ GLDAGADDY+ KP  + EL AR+RAL RR
Sbjct: 61  GLELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRR 120

Query: 119 GCATCQPVLEWGPIRLDPS--------TYEVSYDNEVLSLTRKEYSILELLLRNGRRVLS 170
                  +L  G   LDPS        +  ++ + + ++LT +E+ I + L++N  R++S
Sbjct: 121 SPQFQPQILTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180

Query: 171 RSMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220
            S I   +W L+  P  + V   +R +R+KL         I+TV G GYR
Sbjct: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPC-PIKTVPGQGYR 229


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  153 bits (387), Expect = 4e-40
 Identities = 89/233 (38%), Positives = 135/233 (57%), Gaps = 7/233 (3%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           RIL+++DD  +++ ++  L    Y V  A D       A +L+ DL++LD+MLP++DG T
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  LCQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119
           +CQ+ R       +P+LM+TA   I DKI G D+GADDY+ KP D+ E+ ARVRALLRR 
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 120 -----CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMI 174
                 A    +L  GP+ L P  +E  +  + + LT  E+ +L  LL+   + +S S I
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 IDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEK 227
           +  +W  E   + +T++VH+R LR KL+        I+TV+G GY L   TE+
Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEE 235


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  146 bits (369), Expect = 5e-38
 Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 11/227 (4%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           ILLV+D+  L E L++AL  Q +T+D+A         A   +YDL+ILD MLP++ G+ +
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 63  CQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC-- 120
           C++ R   +  P+L +TA+DT++D++ GLDAG DDY++KP +L EL ARVRALLRR    
Sbjct: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSHG 123

Query: 121 --------ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRS 172
                   A    +L    + LD +        + ++L+ KE ++L L L+   ++LS  
Sbjct: 124 ETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHE 183

Query: 173 MIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGY 219
            I   +W  ESPP  + +   VR LR+K++    +   I +V+G GY
Sbjct: 184 EIYSHLWPGESPPSSNVLAALVRLLRRKIEQPN-APRLINSVYGKGY 229


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  144 bits (364), Expect = 2e-37
 Identities = 87/229 (37%), Positives = 137/229 (59%), Gaps = 10/229 (4%)

Query: 2   RILLVEDDLPLAETLAEALSDQ---LYTVDIATDA-SLAWDYAS---RLEYDLVILDVML 54
           RIL+VED++ + ET+  +L ++   +Y VD   DA +L  +++    +   DL+ILD+ML
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 55  PELDGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRA 114
           P+++G+ +C+  R      PIL+++A+ +  +K+TGL+ GADDY+ KP  L EL AR RA
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 115 LLRR-GCA--TCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSR 171
           ++RR G A     P  ++  + L P    V    E +SL  KE+ +LEL +   RRV SR
Sbjct: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211

Query: 172 SMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220
             +I+ IW ++   +  TV VH+R LR+KL+      + + TV G GYR
Sbjct: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYR 260


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score =  133 bits (335), Expect = 4e-34
 Identities = 88/230 (38%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 5   LVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITLCQ 64
           +V+D+  +   L   LS   Y V  A D   A       + DLV+LDVM+P+LDG  +CQ
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  KWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCATCQ 124
           + R  S + PI+M+TA   + D+ITGL+ GADDYVVKP    EL AR+R++LRR      
Sbjct: 61  ELRKESDI-PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 125 P------VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSI 178
           P      VL+   IR+D +  +V   +E + LT  E+S+LELL+       SRS I+  +
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 179 WKLESPPEEDT--VKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTE 226
           W        DT  V VH+  LR KL+    + + I T  G GY    + E
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILE 229


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score =  125 bits (314), Expect = 1e-31
 Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           IL+VEDD  +A+ + E L  + +T  +  D             DL++LD+MLP+LDG+ +
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 63  CQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120
           C + R    S    ILM+TA+    D+I GL  GADDY+VKP    EL ARVRALLRR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 121 ATCQPV---LEWGPIRLDPSTYEVSY----DNEVLSLTRKEYSILELLLRNGRRVLSRSM 173
              QPV         ++D   ++ S       E L LT  E+++L   +    RV +R+ 
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 174 IIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220
           +I+ +W  +   +E  V  H+R LR+K++    +   I+TV G+GY+
Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK 240


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score =  113 bits (283), Expect = 5e-28
 Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           ++LLV+DD+ L E L+  L  + + V+ A +   A    +   Y LV+LDVM+P+L+GI 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGIE 61

Query: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121
             ++ R  S + P++M+TAR    D++ GL+ GADD + KP +  EL AR++A+LRR  +
Sbjct: 62  TLKEIRKVSNV-PVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSAS 120

Query: 122 TCQ-----PVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIID 176
                    +L +  I L  S    +Y+ E L+LT  E+ IL LLL++   V+SR  +  
Sbjct: 121 PSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSL 180

Query: 177 SIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221
            + +    P + ++ +H+ +LR+KL          +T+ G GY L
Sbjct: 181 EVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYAL 225


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score =  108 bits (270), Expect = 2e-26
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           +IL+VED+  + E +A  LS + Y V  A+D   A +        L++LD MLP   GI 
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62

Query: 62  LCQ--KWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119
             Q  K +     +PI+M+TA+ T  D I  L+AGADDY+ KP     L AR+ A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 120 CATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIW 179
                  ++   + +D +   V +  + ++L+  E+ +L   +R+  +V SR  +++ IW
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 180 KLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLAN 223
             +   E  TV  ++R LR+ L +       I+TV G GYR ++
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNL-APFQCEHYIQTVRGSGYRFSS 225


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score =  105 bits (261), Expect = 2e-25
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 5/190 (2%)

Query: 47  LVILDVMLPELDGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLG 106
           L ++D  L + DGI LC +W    +   I +++A+DT  D + GL AGADDY+ KP  + 
Sbjct: 50  LAVIDSDLTDGDGIELC-RWLYQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQ 108

Query: 107 ELFARVRALLRRGCATCQP-VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNG 165
           E  AR+  L+RR      P +L++G +++D     V Y    + LT +E+S+L +L +  
Sbjct: 109 EFLARIECLIRRVRTVAAPLLLDYGVLKIDLVQRRVEYQGNFVDLTPQEFSLLYVLTQAE 168

Query: 166 RRVLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLAN-- 223
              LSR+ ++   W  E+     T+  HV SLR+K+++       I+TV  +GYR  +  
Sbjct: 169 GSALSRTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNSSI 227

Query: 224 LTEKSLCQGK 233
           L EK +   K
Sbjct: 228 LEEKKVVAEK 237


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 90.9 bits (224), Expect = 3e-21
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 9/227 (3%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           +IL+VED++    TL      + Y V  A +        +    +LV++D+ LP  +G+ 
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 62  LCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCA 121
           L ++ R    L P++ +T RD   DKI GL+ GADDY+ KP +  EL  R R LL R   
Sbjct: 65  LARELREELSL-PLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMP 123

Query: 122 TCQPVLEWG-------PIRLDPSTYE-VSYDNEVLSLTRKEYSILELLLRNGRRVLSRSM 173
             +    +G         +LD +++  ++ + +   L R E+  +     N  ++ +R  
Sbjct: 124 HQEKENTFGREFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTREE 183

Query: 174 IIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYR 220
           ++  +   E  P++ TV V +R +R+  +    + + I T+HG GYR
Sbjct: 184 LLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYR 230


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 77.4 bits (189), Expect = 4e-17
 Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 3   ILLVEDDLPLAETLAEALSDQL-YTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           +LLV+D+  + E++   L D   + VD+A +A+ AWDY       LVI D+M+P++DG  
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 62  LCQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118
             QK R  +    +P++ +TAR    D+I G   G D ++ KP D  EL A VR LL R
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 70.9 bits (172), Expect = 4e-15
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEY--DLVILDVMLPELDG- 59
           IL+VED+  + E + E LS + Y +  A + ++A    + LE   DL+I DVM+PE+DG 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 60  --ITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117
             IT  QK  + +  +P + +TA  T+ D   G+++GADDY++KP    +L   V + L+
Sbjct: 64  GLITALQK-NAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQ 122

Query: 118 R 118
           +
Sbjct: 123 K 123


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 55/200 (27%), Positives = 103/200 (51%), Gaps = 17/200 (8%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           +LLV+DD  L   + + L  Q Y V  A +   A D  +    D+++ D+M+PE+DG   
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 63  CQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120
            ++ R +  +  +P++ ++A+   ++++ GL+ GAD Y+ KP +  EL A+V++ LR+  
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQAD 129

Query: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180
              Q      P+  D +  +V+ D E   LT  E  +++L+ +     L+   I D +  
Sbjct: 130 RLLQH--NNHPLE-DNARVQVARDVE---LTPTETKVIQLVAQG----LANREIADHL-- 177

Query: 181 LESPPEEDTVKVHVRSLRQK 200
                 + TV+ HV ++  K
Sbjct: 178 ---KVSQRTVESHVSNMLNK 194


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 18/148 (12%)

Query: 2    RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI- 60
            RILLVED+    E  AE L D  + VD+A +  +A +  +   Y LV++D+ +PE+DGI 
Sbjct: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 61   -TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119
             T+  +       +PI+ MTA     D+   L AG +D++ KP++  EL+ +        
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNK-------- 1037

Query: 120  CATCQPVLEWGPI--RLDPSTYEVSYDN 145
                  +L W P+   L P T E S  N
Sbjct: 1038 ------LLHWIPVDSPLAPETIEESAIN 1059


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 67.0 bits (162), Expect = 5e-14
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           +LLVED     E ++  L D  + V IA D   A +       DLV+LD+++P ++G  +
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 63  CQKWRS--HSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117
           C++ +S   +  +P++M +++    D+  G+  GAD Y+ KP    EL   ++ LLR
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 65.5 bits (158), Expect = 1e-13
 Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 35/214 (16%)

Query: 1   MRILLVEDDLPLAETLAEALS--DQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58
           M+IL+VEDD  +   L +AL   ++   +    +   A   A+ L  DL+++D+ LP LD
Sbjct: 17  MKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLD 76

Query: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118
           GI   ++ +  S  + I+++T+    N+ I  L +GAD Y VK   L  L   + A    
Sbjct: 77  GIEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA---- 132

Query: 119 GCATCQPVLEWGPIRLDPSTYEVSYDN----------EVLSLTRKEYSILELLLR-NGRR 167
                    + G   LDP    V  +N          +V SL+ +E  +L+L++     +
Sbjct: 133 --------AQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQ 184

Query: 168 VLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKL 201
            +++++ + +          +T+K HVR +  KL
Sbjct: 185 EIAQTLYLST----------NTIKTHVRGIMNKL 208


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 63.9 bits (154), Expect = 4e-13
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 1    MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60
            ++ILL ED+L   +   + L++  Y V IA +     D   +  YDLV++D+ +P +DGI
Sbjct: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGI 1249

Query: 61   TLCQKWRSHSYL---MPILMMTARDTINDKITGLDAGADDYVVKPVDLGEL 108
            T C+  R    L     I+ MTA     D+   LDAG D Y+ KP+ + +L
Sbjct: 1250 TACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 62.4 bits (150), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           IL+V+D       ++E L  + Y+    T    A    ++ + DL++LD+M+P +DG+ +
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 63  CQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116
           C + +       +P++ +TA +   D +     GA DYV KP    EL ARV+  L
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135



 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 5/112 (4%)

Query: 1   MRILLVEDDLPLAETLAEALSDQL-YTVDIATDASLAWDYASRLEYDLVILDVMLPELDG 59
           + ILL ED+L + + +A+ L  +L Y VD+  +   A    ++ +YD+V++DV +PE+DG
Sbjct: 740 LTILLAEDNL-INQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDG 798

Query: 60  ITLCQKWR---SHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGEL 108
           +T  +  R     S    I+ +TA     D+   L +G +DYV KP+ L  L
Sbjct: 799 LTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEAL 850


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           ++LLVED+    + L+  L  + Y V IA D   A   A      L+++D+ LP +DG T
Sbjct: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65

Query: 62  LCQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116
             ++ + H     +PI+ +TA    +D+   + AG DDY  KP+++  L  ++ AL+
Sbjct: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 4   LLVEDDLPL-AETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           +L+ DDLP   + L++ L +  YTV   T   +A         DL++LD+ +P++DG  +
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 63  CQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARV 112
           C+  +    L  +PI+ ++A     DK+   + G  DY+ KP  + E+ AR+
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARI 122


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 59.7 bits (143), Expect = 8e-12
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)

Query: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWD---YASRLEYDLVILDVMLPEL 57
           +++LL+ DD PL     + L +     ++  D S   +    A +   D++ILD+ +  L
Sbjct: 5   LKVLLI-DDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGL 63

Query: 58  DGITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117
            G+   +  R+      IL++T  D  ND  T +DAGAD Y++K  +   L  +++ + +
Sbjct: 64  SGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQ 123

Query: 118 RGCATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDS 177
                   +       L   T+E   DN + SLT +E  +L  +       LS   I   
Sbjct: 124 GEVILSDSIKN----LLLERTHE---DNPLDSLTDREMGVLRQIATG----LSNKQIAAQ 172

Query: 178 IWKLESPPEEDTVKVHVRSLRQKL 201
           ++       E+TVKVH+R+L +KL
Sbjct: 173 LF-----ISEETVKVHIRNLLRKL 191


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%)

Query: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61
           +IL+V+DD  +   L   L  + + V++AT+   A    + ++ ++V+LD ++P +DG  
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 62  LCQK----WRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116
            CQ     +++ S L  +LM+T  D         +AGA DYV KP+    L  RV+ LL
Sbjct: 73  CCQALMKIYQNPSPL--VLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62
           ILLVED+    E   + L+ +   V +A +   A    +   YD +++D+ +P L+G   
Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779

Query: 63  CQKWRSHSY--LMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELF 109
            +  R   Y   +PI+ MTA     D+   LDAG +D++ KP+    LF
Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 30/216 (13%)

Query: 1   MRILLVEDDLPLAETLAEALSDQ--LYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58
           +RILLVEDD      L   LS +  L     A D   A  Y ++  +D+VILDV LP + 
Sbjct: 8   IRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIG 67

Query: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118
           GI  C + +     +P+L++T+          ++A A  Y VK V    L   +R++   
Sbjct: 68  GIEACHQIKKIHPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRSV--- 124

Query: 119 GCATCQPVLEWGPI---RLDPSTYEVSYDNEVL---------SLTRKEYSILELLLRNGR 166
                     W  I    +  +    S    VL          LT++E  IL L+ +   
Sbjct: 125 ----AAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGENPLTKRELEILSLVAKG-- 178

Query: 167 RVLSRSMIIDSIWKLESPPEEDTVKVHVRSLRQKLK 202
              S   I D ++         TV+VHV ++ +KL+
Sbjct: 179 --KSNQEIADELYIAPG-----TVRVHVHTILRKLE 207


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 19/223 (8%)

Query: 1   MRILLVEDDLPLAETLAEALSDQ--LYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58
           +RI L+ED+  + + L +AL+ +     V  A +  L      +   D+VI+D+ LP+++
Sbjct: 4   IRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMN 63

Query: 59  GITLCQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116
           GI + Q+ +    +    ++++T  D     +    AGAD Y +K      L   ++A  
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA-T 122

Query: 117 RRGCATCQP-----VLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSR 171
             G A   P     VL   P          S  +    LT +E  +L+L++       S 
Sbjct: 123 HGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQLIVDG----CSN 178

Query: 172 SMIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETV 214
           + I + ++         TVK HVR++  KL +   +  A+  +
Sbjct: 179 ADIAEKLYITVG-----TVKTHVRNILNKLCANDRTQAAVRAI 216


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 1   MRILLVEDDLPLAETLAEALS--DQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELD 58
           +R+L+ +D     + LA  ++    +  +  A +   A       + D+ ++D+ +PE++
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66

Query: 59  GITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117
           G+       +      I+++T  D+  D   GL AGA  Y++K  +  EL   +R + R
Sbjct: 67  GVAAISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,671
Number of Sequences: 78
Number of extensions: 811
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 30
Number of HSP's better than  0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 33
length of query: 234
length of database: 48,235
effective HSP length: 60
effective length of query: 174
effective length of database: 43,555
effective search space:  7578570
effective search space used:  7578570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002489 slr1588 
         (421 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002489 slr1588                                            816   0.0  
SYNE-PCC-01-000542 sll0821                                            176   1e-46
SYNE-PCC-01-002731 slr1909                                             96   3e-22
SYNE-PCC-01-001461 slr0115                                             96   3e-22
SYNE-PCC-01-002033 slr0947                                             89   3e-20
SYNE-PCC-01-000414 sll0649                                             82   2e-18
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    82   4e-18
SYNE-PCC-01-002635 slr1783                                             74   1e-15
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   73   1e-15
SYNE-PCC-01-001437 slr0081                                             73   2e-15
SYNE-PCC-01-001306 sll1905                                             73   2e-15
SYNE-PCC-01-002086 slr1042                                             72   2e-15
SYNE-PCC-01-002672 slr1837                                             71   7e-15
SYNE-PCC-01-002486 slr1584                                             71   7e-15
SYNE-PCC-01-001575 slr0312                                             67   8e-14
SYNE-PCC-01-001133 sll1673                                             67   8e-14
SYNE-PCC-01-002873 slr2098                                             66   2e-13
SYNE-PCC-01-001132 sll1672                                             66   2e-13
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    64   7e-13
SYNE-PCC-01-000518 sll0789                                             64   9e-13
SYNE-PCC-01-002221 slr1213                                             63   2e-12
SYNE-PCC-01-000242 sll0396                                             63   2e-12
SYNE-PCC-01-002879 slr2104                                             62   3e-12
SYNE-PCC-01-000800 sll1228                                             60   1e-11
SYNE-PCC-01-000523 sll0797                                             59   2e-11
SYNE-PCC-01-002788 slr1982                                             59   4e-11
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    57   1e-10
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    56   2e-10
SYNE-PCC-01-002618 slr1760                                             55   3e-10
SYNE-PCC-01-000608 sll0921                                             54   9e-10
SYNE-PCC-01-002778 slr1969                                             46   2e-07
SYNE-PCC-01-000877 sll1330                                             44   9e-07
SYNE-PCC-01-002617 slr1759                                             42   5e-06
SYNE-PCC-01-001160 sll1708                                             42   5e-06

>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score =  816 bits (2107), Expect = 0.0
 Identities = 410/421 (97%), Positives = 410/421 (97%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
           DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120

Query: 121 LQKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQVFLFYQP 180
           LQKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQVFLFYQP
Sbjct: 121 LQKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQVFLFYQP 180

Query: 181 KVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAEKTGFISVVGEWVIETVLRQCQQWQ 240
           KVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAEKTGFISVVGEWVIETVLRQCQQWQ
Sbjct: 181 KVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAEKTGFISVVGEWVIETVLRQCQQWQ 240

Query: 241 YQGLDPIQVAINISARQFHGEDLICILRLGTHKYDVSPQQXXXXXXXXXXXKNVQDSIKQ 300
           YQGLDPIQVAINISARQFHGEDLICILRLGTHKYDVSPQQ           KNVQDSIKQ
Sbjct: 241 YQGLDPIQVAINISARQFHGEDLICILRLGTHKYDVSPQQLEVELTETLLVKNVQDSIKQ 300

Query: 301 LNELRAEGFSVAIDDFGTGYSSLSYLQQFPFDVLKIDQSFVRHIDKNAKNKTITASIINL 360
           LNELRAEGFSVAIDDFGTGYSSLSYLQQFPFDVLKIDQSFVRHIDKNAKNKTITASIINL
Sbjct: 301 LNELRAEGFSVAIDDFGTGYSSLSYLQQFPFDVLKIDQSFVRHIDKNAKNKTITASIINL 360

Query: 361 AHELELRVTAEGVETWAEYDTIAHMGCDELQGYLFSRPLPVADFTELLSRGTDVPILPLR 420
           AHELELRVTAEGVETWAEYDTIAHMGCDELQGYLFSRPLPVADFTELLSRGTDVPILPLR
Sbjct: 361 AHELELRVTAEGVETWAEYDTIAHMGCDELQGYLFSRPLPVADFTELLSRGTDVPILPLR 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score =  176 bits (446), Expect = 1e-46
 Identities = 98/249 (39%), Positives = 142/249 (57%), Gaps = 10/249 (4%)

Query: 157 DEAEIWRDLEVGLNTGQVFLFYQPKVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAE 216
           D   +  DL   L   +  L++QP+V++    L G EAL+RW HPR G V+P +FIP+AE
Sbjct: 606 DRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFIPLAE 665

Query: 217 KTGFISVVGEWVIETVLRQCQQWQYQGLDPIQVAINISARQFHGED-----LICILRLGT 271
           + G I+ +G+WV+ET     Q +  +    +++A+NISARQF  E      L C+ R G 
Sbjct: 666 ELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECLKRTG- 724

Query: 272 HKYDVSPQQXXXXXXXXXXXKNVQDSIKQLNELRAEGFSVAIDDFGTGYSSLSYLQQFPF 331
               + P+            ++++ ++  L+ LR EG  VAIDDFGTGYSSLS L+Q P 
Sbjct: 725 ----MPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPI 780

Query: 332 DVLKIDQSFVRHIDKNAKNKTITASIINLAHELELRVTAEGVETWAEYDTIAHMGCDELQ 391
             LKID+SFV  +     +  I   +I+LA+ L L   AEG+E+ A+   +  MGC   Q
Sbjct: 781 HRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQ 840

Query: 392 GYLFSRPLP 400
           GY  +RPLP
Sbjct: 841 GYFLTRPLP 849


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 95.5 bits (236), Expect = 3e-22
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           +L+V+D+  +  L+ + L  + Y++  A NG  AL LL +   +PD+I+CD+MMPEMDG+
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTT--TVPDMIVCDIMMPEMDGY 67

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
             I  +++N   + IP +FL+A G   +  KG+N GAD Y+ KPF+ E+L   V S L++
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ 127

Query: 124 QAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174
             +L       +  +   +  R        LTP E ++ + +  GL   ++
Sbjct: 128 ADRLLQHNNHPLEDNARVQVARD-----VELTPTETKVIQLVAQGLANREI 173


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 95.5 bits (236), Expect = 3e-22
 Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 13/163 (7%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           M  IL+++D+  I +L+   L +  Y + +A +G     L  ++++ PDLI+ D+M+P++
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQAL--AVQLQPDLIMLDLMLPKV 58

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
           DG  +   L+++ +TA IP + LTALG +QD  +G +SGADDYL KPF  E++L  V + 
Sbjct: 59  DGFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRAL 118

Query: 121 LQKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAE-IW 162
           L++  ++    Q +  S +  +       G  TL P+  E IW
Sbjct: 119 LRRTDRIP---QAAKHSEILNQ-------GPLTLVPERFEAIW 151


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 88.6 bits (218), Expect = 3e-20
 Identities = 47/121 (38%), Positives = 76/121 (62%), Gaps = 5/121 (4%)

Query: 6   VVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGHGL 65
           +V+DEA IR ++   LS+  Y+++ A +G  A+   +  +  PDL++ DVMMP++DG+G+
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESD--PDLVVLDVMMPKLDGYGV 58

Query: 66  ITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQKQA 125
              L+K +    IP I LTALG + D   G+  GADDY++KPF  ++L   + S L++  
Sbjct: 59  CQELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVD 115

Query: 126 K 126
           K
Sbjct: 116 K 116


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 82.4 bits (202), Expect = 2e-18
 Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           M  IL+VED+  I +LI ETL  E +  +   +G   L +    E +PDLI+ D+M+P++
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQ--EQVPDLIVLDLMLPKL 68

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
           DG  + T +++   +     + LTA G   D   G+++GADDYL+KPF   +L+  V + 
Sbjct: 69  DGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRAL 128

Query: 121 LQKQAK 126
           L++Q +
Sbjct: 129 LRRQLR 134


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 81.6 bits (200), Expect = 4e-18
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           IL+VEDE  IRE+I   LS + Y ++EA +   A+   N ++  P LI+ D M+P   G 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAI---NKIKENPKLILLDWMLPGRSGI 61

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119
             I  ++K    AAIP I LTA  T +D    +N+GADDY+ KPF  + LL  + +
Sbjct: 62  QFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEA 117


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 73.6 bits (179), Expect = 1e-15
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 21/200 (10%)

Query: 3   TILVVEDEAIIRELIGETLSLE-NYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61
           ++L+V+DE  +RE +   L    ++K+  A N   A   L     +P L+I D+MMP++D
Sbjct: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQ--HHLPALVISDIMMPQVD 114

Query: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121
           G+  +  L+++A+  ++P +FLTA G   D  +G  +G D +L KPF  ++L   V + L
Sbjct: 115 GYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174

Query: 122 QKQ----------AKLSAFYQGSISSSLTERPRRSGTIGTPT-----LTPDEAEIWRDLE 166
            +Q          AKL   YQ  I +   +  + SG   TP+      TP E  +   + 
Sbjct: 175 ARQQASSDAGSESAKLQEIYQ-EIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVS 233

Query: 167 VGLNTGQVFLFYQPKVSIHN 186
            GL   ++    Q K S+ N
Sbjct: 234 QGLMNKEIAA--QLKTSVRN 251


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 73.2 bits (178), Expect = 1e-15
 Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 6/128 (4%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           MS +L+V+D+  + EL+   L LE + +  A NG  AL  LN       L++ DVMMP++
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESY---KLVLLDVMMPKL 57

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
           +G   I  L++  K + +P + LTA G   D   G+  GADD L KPF   +L+  + + 
Sbjct: 58  NG---IETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAI 114

Query: 121 LQKQAKLS 128
           L++ A  S
Sbjct: 115 LRRSASPS 122


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 7/126 (5%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMP-----DLIICDVMMP 58
           ILVVEDE  IRE I  +L  E Y++   ++G  AL LL      P     DLII D+M+P
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 59  EMDGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVN 118
           +++G  +  +L+        P + ++A G+  +   G+  GADDY+ KPF  ++L+    
Sbjct: 93  QVNGLDVCRSLRFGGDNT--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150

Query: 119 SRLQKQ 124
           + +++Q
Sbjct: 151 AMIRRQ 156


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           ILVV+D      +I E L  E Y      +G  AL  +   +  PDLI+ D+MMP MDG 
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVT--QAQPDLILLDLMMPGMDGL 77

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQ 122
            +   L+++ +T  IP IFLTA    QD  +    GA DY+ KPF   +LL  V + L+
Sbjct: 78  EVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLE 136



 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 3   TILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDG 62
           TIL+ ED  I +++    L    Y +    NG  AL  L   +   D+++ DV MPEMDG
Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDY--DVVLMDVEMPEMDG 798

Query: 63  HGLITALQKNAKTAAIPFIF-LTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117
                 ++++   +  P+I  +TA     D  + + SG +DY+ KP + E L  A+
Sbjct: 799 LTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQAL 854


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 72.4 bits (176), Expect = 2e-15
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           M+ +L+VED +  RE+I   L    +++  A +G  AL  L +    PDL++ D++MP M
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFS--PDLVVLDIVMPRM 84

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
           +G+ +   ++ + KT  +P I  ++ G   D   GM  GAD Y+ KPF+  +L+  +   
Sbjct: 85  NGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144

Query: 121 LQ 122
           L+
Sbjct: 145 LR 146


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 70.9 bits (172), Expect = 7e-15
 Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           M+ IL+V+DE  + E + + L  + + I  A+ G    GL  ++    DL+I D M+P++
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKT--GLAMAIAGQYDLLILDWMLPQV 58

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120
            G  L    Q      + P +FLTA  T+ D   G+++G DDYLIKPF+  +LL  V + 
Sbjct: 59  SG--LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRAL 116

Query: 121 LQKQA 125
           L++Q+
Sbjct: 117 LRRQS 121


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 70.9 bits (172), Expect = 7e-15
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           IL+VED+  + E + E LS + Y +  A + ++A    + LE   DL+I DVM+PE+DG 
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEY--DLVILDVMLPELDG- 59

Query: 64  GLITALQK-NAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQ 122
             IT  QK  + +  +P + +TA  T+ D   G+++GADDY++KP    +L   V + L+
Sbjct: 60  --ITLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLR 117

Query: 123 K 123
           +
Sbjct: 118 R 118


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 67.4 bits (163), Expect = 8e-14
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 4   ILVVEDEAIIRELIGETLSLEN--YKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61
           +L+ +D AI R+ +   ++ +     I +AENG  A+ L    E  PD+ + D+ MPE++
Sbjct: 9   VLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFE--EHQPDVTLMDLRMPEVE 66

Query: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121
           G   I+A+    K A I  I LT   + +D  +G+ +GA  YL+K  + ++LLNA+ +  
Sbjct: 67  GVAAISAICAIVKFARI--IVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVH 124

Query: 122 QKQAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174
           + Q     +    + + L +R      +  P L+  E E+   L  G++   +
Sbjct: 125 RGQ----KYIPPDVGAKLVQR------LSNPELSERELEVLGSLAQGMSNADI 167


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 67.4 bits (163), Expect = 8e-14
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           IL+V+D     +L+ + L    Y +    +G +AL  L      PDLI+ D+ MP+MDG+
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKR--PDLILLDIKMPDMDGY 68

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            +   ++K  +   IP IF++ALG   D  K    G  DY+ KPF+ E+++  +  +   
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTI 128

Query: 124 Q 124
           Q
Sbjct: 129 Q 129


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 4    ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
            IL+VED  I +E+  E L    + +  A NG +AL  LN+      L++ D+ MPEMDG 
Sbjct: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYA--LVLMDMQMPEMDGI 984

Query: 64   GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLN 115
                A+++N + A +P + +TA     D  + + +G +D+L KP + E+L N
Sbjct: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWN 1036



 Score = 41.6 bits (96), Expect = 5e-06
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSL--EVMP-DLIICDVMMPEM 60
           +LVV+D    R ++ + L    + +   E+G  AL  L     E  P  ++  D  MP M
Sbjct: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117
           DG  +   L+            +TA G  + F K  + G DD L+KP     L +++
Sbjct: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSL 889


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           ILVV+D+++ R+L+ + L+   ++I EA NG  A+ L  S E  P LI  D+ MP MDG+
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWE--PHLIFMDMRMPVMDGY 689

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121
                ++   K  A   + LTA    ++    +++G DD+L KPF++  + +++   L
Sbjct: 690 EATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSLTKHL 747


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 64.3 bits (155), Expect = 7e-13
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 9/131 (6%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           ILVVEDE + R  +      E Y + EAENG     +L +  +  +L++ D+ +P  +G 
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNI--NLVVMDINLPGKNGL 63

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLL----NAVNS 119
            L   L++     ++P IFLT      D   G+  GADDYL KPF   +L     N ++ 
Sbjct: 64  LLARELREEL---SLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120

Query: 120 RLQKQAKLSAF 130
            +  Q K + F
Sbjct: 121 AMPHQEKENTF 131


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 63.9 bits (154), Expect = 9e-13
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           +L+VEDE  +   + + L  ENY +   ++G +A   L+   V   L I D M+P + G 
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            L   L+   + +++P + LTA   + D  +G+++GADDYLIKPF   +LL  + S  ++
Sbjct: 63  ELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 124 QAKL 127
             +L
Sbjct: 121 SPEL 124


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKI-LEAENGAVALGLLNSLEVMPDLIICDVMMP- 58
           ++ IL+VEDE ++ + I + L  + Y+I + A +GA AL  +   E  PDL++ D+ +  
Sbjct: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKI--AEFYPDLVLLDIRIKG 59

Query: 59  EMDGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117
           E+DG   I   ++     +IP ++LTA    +   +   +    Y+IKPF++E LL+ V
Sbjct: 60  EIDG---IEVAERIKSLYSIPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTV 115


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           +LVVE+E  +   +   L  E Y +  A +G    G   + E  PDLII +  +P M G 
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLK--GFTQAQEFPPDLIIVNGALPGMSGL 62

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            L   L++    + IP I +TA   +++   G+++GADDY++KPF  ++    +  +L++
Sbjct: 63  ELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 2   STILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61
           ++IL+VED  I RE   + L+ +  ++  A NG  AL LL S     D I+ D+ MP ++
Sbjct: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTY--DAILMDIQMPMLN 775

Query: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117
           G+    A+++      +P I +TA     D  K +++G +D+L KP K + L   +
Sbjct: 776 GYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 60.1 bits (144), Expect = 1e-11
 Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           +LVV+D    R L+ + L+   + + EAENG +A+ L  S    P +I+ D+ MP +DG 
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWH--PQVILMDMQMPVLDGR 477

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLL 114
                ++ + +      I LTA     +  + +++G DD+L KPF+ E+L+
Sbjct: 478 STTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELI 528


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           IL+VEDE  +   I + L  E Y +    +G+ A   L +      L I D ++P + G 
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            L   L+    +  +P + LTALG  ++  +G+++GADDYL KPF   +LL    +RL+ 
Sbjct: 63  ELCQKLRTQGNS--LPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELL----ARLRA 116

Query: 124 QAKLSAFYQGSI 135
             + S  +Q  I
Sbjct: 117 LQRRSPQFQPQI 128


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 58.5 bits (140), Expect = 4e-11
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60
           M+ +L+VED  + R+++   L  + Y+++ A +G  A+ +  ++   P LI+ D+ +P +
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTM--AISESPQLILMDMSLPII 61

Query: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119
           DG      ++ +   A IP I LTA     D  + + +G DDY  KP + + LL  + +
Sbjct: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           +L+++D  ++R  I + + L++   + A+  +   G+  +L+  PD+II D+ M  + G 
Sbjct: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
             +  L+     A I  + LT      D    +++GAD YL+K  + + LL  +    Q 
Sbjct: 67  DTLKGLRAEGVDARI--LILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIAQG 124

Query: 124 QAKLSAFYQGSISSSLTERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174
           +  LS     SI + L ER      +   +LT  E  + R +  GL+  Q+
Sbjct: 125 EVILS----DSIKNLLLERTHEDNPL--DSLTDREMGVLRQIATGLSNKQI 169


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           IL++ED+ +I   +   L+   + +    +G   +  L S     D ++ D+ +P++DG 
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPY--DAVVLDLTLPKLDGL 60

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            ++   + N +   +P + LTA  T+ +  KG+ SGADDYL KPF     L  V +RLQ 
Sbjct: 61  EVLQQWRSNHQD--VPVLILTARDTLDERVKGLQSGADDYLCKPF----ALAEVAARLQA 114

Query: 124 QAKLSAFYQGSI 135
             +    Y  S+
Sbjct: 115 LIRRRYGYHHSV 126


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 55.5 bits (132), Expect = 3e-10
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           ILVV+D+  +R  +   L  E +++  A NG  AL      E+ P++++ D +MP MDG 
Sbjct: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEAL--TKFAEIKPEVVLLDAVMPVMDGF 71

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPF--------------- 108
               AL K  +  +   + +T L       +   +GA DY+ KP                
Sbjct: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ 131

Query: 109 -KQEDLLNAVNSRLQKQAKLSAFYQ 132
            + +  L +VN  L++ AK+    Q
Sbjct: 132 NRLQHQLESVNQMLERLAKVDQLTQ 156


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 53.9 bits (128), Expect = 9e-10
 Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 4   ILVVEDEAIIRELIGETLSLE-NYK-ILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61
           I ++EDE +IR+ + + L++E +++ + EA NG   LGL+   +  PD++I D+ +P+M+
Sbjct: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGR--LGLVMMQQTRPDVVIIDIGLPDMN 63

Query: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119
           G  +   L+K         + LT     +      ++GAD Y +K  + E L+ A+ +
Sbjct: 64  GIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 2   STILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61
           S+++V+E +  I  LI E L++ NY+++   +   AL  +  L+  P LII D     +D
Sbjct: 630 SSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQ--PGLIIVDGDF--VD 685

Query: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121
              +   ++K+ + + +    L+   +  +++     G DDYL+KP + E LL  V S  
Sbjct: 686 VTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRVQSIQ 745

Query: 122 QK 123
           Q+
Sbjct: 746 QE 747


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 43.9 bits (102), Expect = 9e-07
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
           I VVE    +R L+   L    Y + +      A    N+   +P L + D  + + DG 
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQ--LPTLAVIDSDLTDGDGI 63

Query: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQK 123
            L   L +  ++       L+A  T +D   G+ +GADDYL KPF  ++ L  +   +++
Sbjct: 64  ELCRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRR 120

Query: 124 QAKLSA 129
              ++A
Sbjct: 121 VRTVAA 126


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 41.6 bits (96), Expect = 5e-06
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 4    ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63
            IL+ ED  + +++  + L+   Y +  A NG   +  L   +   DL++ D+ MP MDG 
Sbjct: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALE--KKFYDLVLMDMQMPVMDG- 1248

Query: 64   GLITALQKNAKTAAIP----FIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDL 113
              ITA +   +T  +      + +TA     D ++ +++G D Y+ KP     L
Sbjct: 1249 --ITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 41.6 bits (96), Expect = 5e-06
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 10/118 (8%)

Query: 4   ILVVEDEAIIRELIGETLSL-ENYKIL-EAENGAVALGLLNSLEVM-PDLIICDVMMPEM 60
           IL+VED+ +++  + + L   E ++I+   +NG    G +    V+ PDLI+ D+ +P +
Sbjct: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNG---YGAVQQAAVLNPDLIVMDIGLPGL 75

Query: 61  DGHGLITALQKNAKTA-AIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117
           DG   I A ++  +T+  I  + LT+     +    ++SGAD Y +K    E L+ A+
Sbjct: 76  DG---IEATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAI 130


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,144
Number of Sequences: 78
Number of extensions: 1591
Number of successful extensions: 78
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 39
length of query: 421
length of database: 48,235
effective HSP length: 65
effective length of query: 356
effective length of database: 43,165
effective search space: 15366740
effective search space used: 15366740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002617 slr1759 
         (1462 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002617 slr1759                                           2740   0.0  
SYNE-PCC-01-001306 sll1905                                            371   e-104
SYNE-PCC-01-002873 slr2098                                            352   5e-99
SYNE-PCC-01-002879 slr2104                                            274   2e-75
SYNE-PCC-01-001132 sll1672                                            200   2e-53
SYNE-PCC-01-000891 sll1353                                            197   3e-52
SYNE-PCC-01-001280 sll1871                                            184   2e-48
SYNE-PCC-01-001294 sll1888                                            182   5e-48
SYNE-PCC-01-000800 sll1228                                            180   3e-47
SYNE-PCC-01-000295 sll0474                                            155   8e-40
SYNE-PCC-01-002778 slr1969                                            146   4e-37
SYNE-PCC-01-001509 slr0210                                            127   2e-31
SYNE-PCC-01-001517 slr0222                                            121   2e-29
SYNE-PCC-01-002220 slr1212                                            105   8e-25
SYNE-PCC-01-000985 sll1475                                             80   3e-17
SYNE-PCC-01-002788 slr1982                                             79   8e-17
SYNE-PCC-01-001690 slr0473                                             79   1e-16
SYNE-PCC-01-002635 slr1783                                             64   3e-12
SYNE-PCC-01-002486 slr1584                                             64   3e-12
SYNE-PCC-01-001133 sll1673                                             61   3e-11
SYNE-PCC-01-000414 sll0649                                             60   4e-11
SYNE-PCC-01-002033 slr0947                                             59   8e-11
SYNE-PCC-01-000523 sll0797                                             57   3e-10
SYNE-PCC-01-002086 slr1042                                             57   5e-10
SYNE-PCC-01-002731 slr1909                                             56   9e-10
SYNE-PCC-01-002672 slr1837                                             55   1e-09
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   53   8e-09
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    52   1e-08
SYNE-PCC-01-001160 sll1708                                             52   2e-08
SYNE-PCC-01-001437 slr0081                                             50   4e-08
SYNE-PCC-01-001461 slr0115                                             49   9e-08
SYNE-PCC-01-002618 slr1760                                             49   1e-07
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    48   2e-07
SYNE-PCC-01-001075 sll1592                                             47   4e-07
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    47   4e-07
SYNE-PCC-01-001575 slr0312                                             46   9e-07
SYNE-PCC-01-000242 sll0396                                             46   9e-07
SYNE-PCC-01-000518 sll0789                                             45   2e-06
SYNE-PCC-01-000983 sll1473                                             44   4e-06

>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 2740 bits (7103), Expect = 0.0
 Identities = 1388/1462 (94%), Positives = 1388/1462 (94%)

Query: 1    MVISATVISMKXXXXXXXXXXXXXXXXGAGLSVMTVHTWLFLYNQVQERLKQVLTNRLTN 60
            MVISATVISMK                GAGLSVMTVHTWLFLYNQVQERLKQVLTNRLTN
Sbjct: 1    MVISATVISMKSPLRRLLLSPVLPILIGAGLSVMTVHTWLFLYNQVQERLKQVLTNRLTN 60

Query: 61   IHEQIENQLNIHVRQLEQMAGRWERSPTGTEQTDWRLDARAQAEGFDGYQTIQWVDPKFV 120
            IHEQIENQLNIHVRQLEQMAGRWERSPTGTEQTDWRLDARAQAEGFDGYQTIQWVDPKFV
Sbjct: 61   IHEQIENQLNIHVRQLEQMAGRWERSPTGTEQTDWRLDARAQAEGFDGYQTIQWVDPKFV 120

Query: 121  VRWVEPLPDDEHDIDYANQYPHQIQSLELAARQKNTILSGVVDLDQGEKGFLVYVPLFIG 180
            VRWVEPLPDDEHDIDYANQYPHQIQSLELAARQKNTILSGVVDLDQGEKGFLVYVPLFIG
Sbjct: 121  VRWVEPLPDDEHDIDYANQYPHQIQSLELAARQKNTILSGVVDLDQGEKGFLVYVPLFIG 180

Query: 181  DRFDGFVVGVFQLDQFIGSVRPLSGNKPDQDSGLRSFGLRIFEGNQLIYNDVPDDWEQDI 240
            DRFDGFVVGVFQLDQFIGSVRPLSGNKPDQDSGLRSFGLRIFEGNQLIYNDVPDDWEQDI
Sbjct: 181  DRFDGFVVGVFQLDQFIGSVRPLSGNKPDQDSGLRSFGLRIFEGNQLIYNDVPDDWEQDI 240

Query: 241  VVTQELAWANSLPQAEAMTSRWQLQLVPGPILLDQYGSSQWILFSGLLMAWAVAIAVYYL 300
            VVTQELAWANSLPQAEAMTSRWQLQLVPGPILLDQYGSSQWILFSGLLMAWAVAIAVYYL
Sbjct: 241  VVTQELAWANSLPQAEAMTSRWQLQLVPGPILLDQYGSSQWILFSGLLMAWAVAIAVYYL 300

Query: 301  QKSSKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDTEGVITYVNDKF 360
            QKSSKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDTEGVITYVNDKF
Sbjct: 301  QKSSKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDTEGVITYVNDKF 360

Query: 361  VEVSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQINNRAKAGNTYWVDS 420
            VEVSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQINNRAKAGNTYWVDS
Sbjct: 361  VEVSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQINNRAKAGNTYWVDS 420

Query: 421  TVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMT 480
            TVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMT
Sbjct: 421  TVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKMT 480

Query: 481  FVNQSWLEFRGATLAEESGNGYLEGIHPDDKGHYLGVYSQAFGDXXXXXXXXXXXXVDQQ 540
            FVNQSWLEFRGATLAEESGNGYLEGIHPDDKGHYLGVYSQAFGD            VDQQ
Sbjct: 481  FVNQSWLEFRGATLAEESGNGYLEGIHPDDKGHYLGVYSQAFGDRRRFELEYRYRRVDQQ 540

Query: 541  YRWIVNVGVPRYLEDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQ 600
            YRWIVNVGVPRYLEDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQ
Sbjct: 541  YRWIVNVGVPRYLEDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQ 600

Query: 601  PTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYD 660
            PTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYD
Sbjct: 601  PTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYD 660

Query: 661  PTIIQGDRAMAVVDLDQDLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQR 720
            PTIIQGDRAMAVVDLDQDLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQR
Sbjct: 661  PTIIQGDRAMAVVDLDQDLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQR 720

Query: 721  VWTADXXXXXXXXXXQMGIXXXXXXXXXXXXXXXXXXXXXNLELEKATWAAEAANRAKGE 780
            VWTAD          QMGI                     NLELEKATWAAEAANRAKGE
Sbjct: 721  VWTADEIELLEAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGE 780

Query: 781  FLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIE 840
            FLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIE
Sbjct: 781  FLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIE 840

Query: 841  ADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSN 900
            ADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSN
Sbjct: 841  ADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSN 900

Query: 901  LIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDR 960
            LIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDR
Sbjct: 901  LIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDR 960

Query: 961  LFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAP 1020
            LFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAP
Sbjct: 961  LFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAP 1020

Query: 1021 ALAEADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLD 1080
            ALAEADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLD
Sbjct: 1021 ALAEADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLD 1080

Query: 1081 AAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAGADELSVFQTVLNKPVRQSL 1140
            AAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAGADELSVFQTVLNKPVRQSL
Sbjct: 1081 AAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAGADELSVFQTVLNKPVRQSL 1140

Query: 1141 IFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLV 1200
            IFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLV
Sbjct: 1141 IFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLV 1200

Query: 1201 NQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLP 1260
            NQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLP
Sbjct: 1201 NQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLP 1260

Query: 1261 LERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSALITSPQAREDI 1320
            LERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSALITSPQAREDI
Sbjct: 1261 LERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSALITSPQAREDI 1320

Query: 1321 VTLGDKITVVEEQTMVKPTDVTESPLDPTAIAFLRDDLCGGDLTLFGEMVACYCQESQKL 1380
            VTLGDKITVVEEQTMVKPTDVTESPLDPTAIAFLRDDLCGGDLTLFGEMVACYCQESQKL
Sbjct: 1321 VTLGDKITVVEEQTMVKPTDVTESPLDPTAIAFLRDDLCGGDLTLFGEMVACYCQESQKL 1380

Query: 1381 IEELVQGLEVDDFAVIRRTAHXXXXXXXXXXXXXXXTFCQQLEKNAGSGNLGLGSPPQLV 1440
            IEELVQGLEVDDFAVIRRTAH               TFCQQLEKNAGSGNLGLGSPPQLV
Sbjct: 1381 IEELVQGLEVDDFAVIRRTAHSLKSSSASLGAQQLSTFCQQLEKNAGSGNLGLGSPPQLV 1440

Query: 1441 DRCRQLHIAVVEALAPFTIPSP 1462
            DRCRQLHIAVVEALAPFTIPSP
Sbjct: 1441 DRCRQLHIAVVEALAPFTIPSP 1462


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  371 bits (952), Expect = e-104
 Identities = 260/680 (38%), Positives = 357/680 (52%), Gaps = 67/680 (9%)

Query: 761  NLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIR 820
            N EL  AT AAEAANR+K EFLA MSHEIRTPMN +IGMT LL+ TDL  QQ  + QTIR
Sbjct: 304  NQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLTTQQKYFAQTIR 363

Query: 821  QSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGID 880
             SGETLLT+INDILDFSKIEA KL LE   F+L   +E  L++  P AR K L L     
Sbjct: 364  NSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFL 423

Query: 881  PQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSH 940
               P  + GD  RLRQIL NL+ NA+KFTE G+V +TV+    D A+            +
Sbjct: 424  TPIPPNLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKG----------EY 473

Query: 941  RICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVT 1000
            +ICF ++DTGIGI  ++Q  LF++FSQ +SS TR++GGTGLGL I  RLT +MGG +   
Sbjct: 474  QICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAE 533

Query: 1001 SEPGV----------------GSNFRFCILTTAQAPALAEADSVQQ--MKGKQVLIVDDN 1042
            S   V                GS F F +  T          +++     G+ VL+ D +
Sbjct: 534  SNGCVVGNPPELWQIGQPTIEGSTFYFTVNLTVLPSCAYSVHNLRHSLFIGRSVLVADYD 593

Query: 1043 ETNRRILQDQCQAWGLVCHCFTSGESAL---DWFARCPDLDAAILDLQMPNMDGITLAHH 1099
            E     +++   +W L     T    A    D  +R    +   L L  P  +G      
Sbjct: 594  EGRGTRMRNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEG--RGKQ 651

Query: 1100 LRQFAQGK---------DLPIILLSSGLVAGADELSVFQTVLNKPVRQSLIFDSLVNIFQ 1150
               F  GK         D+P+++ +   ++  +  S  +  +   ++  +  D L N   
Sbjct: 652  FTDFDLGKITTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLV 711

Query: 1151 GSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQP----ALQILLAEDNLVNQKVAH 1206
              +G         Q + P  V       TE  +  L P     L ILLAEDNL+NQ+VA 
Sbjct: 712  DVLG---------QTEPPTLV------STEAISGPLFPYSSSNLTILLAEDNLINQQVAK 756

Query: 1207 QMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPR 1266
             +L  LGYPV + NNGQE + AL K  YD+VLMD++MP MDG+TA  HIR++     +P 
Sbjct: 757  LLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPW 816

Query: 1267 IVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ-DTSALITSPQAREDIVTLGD 1325
            I+A+TA +M GDR+ CL +GM+ Y+SKPI +  L++ LQ   +AL ++ Q R   V+   
Sbjct: 817  IIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAATALQSTSQDRMATVSCVS 876

Query: 1326 KITVVEEQTMVKPTD---VTESPLDPTAIAFLRD-DLCGGDLTLFGEMVACYCQESQKLI 1381
                    +   P D    T  P+D   I  LRD D   G L L  E++  YCQ + +L+
Sbjct: 877  AFEAKPSPSSPCPEDPAGTTLPPIDQDIICSLRDLDRENGQLIL-REIIDIYCQTAPELL 935

Query: 1382 EELVQGLEVDDFAVIRRTAH 1401
            + +   +   D+  +   AH
Sbjct: 936  QRIKLAIANQDWGNLSSAAH 955



 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 1183 ATSLQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQ 1242
            AT    +  IL+ +D   N  V  ++L   GY      +G E +  + +   DL+L+D+ 
Sbjct: 11   ATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLM 70

Query: 1243 MPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            MP MDG+  C  ++Q  P  R   ++ +TA+    D  +    G   Y++KP S  +L
Sbjct: 71   MPGMDGLEVCDRLKQD-PQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127



 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 1036 VLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARC-PDLDAAILDLQMPNMDGI 1094
            +L+VDD + N  ++ +  +  G      TSG  AL    +  PDL   +LDL MP MDG+
Sbjct: 20   ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDL--ILLDLMMPGMDGL 77

Query: 1095 TLAHHLRQFAQGKDLPIILLSS 1116
             +   L+Q  Q +D+P+I L++
Sbjct: 78   EVCDRLKQDPQTRDIPVIFLTA 99


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  352 bits (903), Expect = 5e-99
 Identities = 246/658 (37%), Positives = 345/658 (52%), Gaps = 64/658 (9%)

Query: 763  ELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQS 822
            E+++A   AE A+R K +FLA MSHEIRTPMN VIGMT L + TDL  +Q +Y+  IR S
Sbjct: 512  EMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFS 571

Query: 823  GETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQ 882
            G+ LL +INDILDFSKIEA KL +E+  F+L  +++ V  +    A  K LEL + ID  
Sbjct: 572  GQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRN 631

Query: 883  TPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRI 942
             P   +GD +RL QIL N   NA+KFTE+G++ + V+ + +        +L L       
Sbjct: 632  LPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEY---RDQDVVLYLA------ 682

Query: 943  CFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSE 1002
               ++DTGIGI  +    LF SF Q DSSTTR +GGTGLGL I +R+ ++MGG + V SE
Sbjct: 683  ---VKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESE 739

Query: 1003 PGVGSNF--RFCILTTAQAPALAEADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVC 1060
             G GS F  + C+  +   P        + ++GK+VL+VDDN+  R +++D  +    V 
Sbjct: 740  YGQGSTFWAKVCLQKSNVIPHRLVLS--KDLEGKRVLVVDDNDHARLVMKDLLEQMKFVV 797

Query: 1061 HCFTSGESALDWFARCP----DLDAAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSS 1116
                SG  AL++ A             +D QMPNMDG+ +A  L+         I ++++
Sbjct: 798  ETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTA 857

Query: 1117 GLVAGADELSV------FQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEF 1170
                G +EL V         VL KP+  S++FDSL  +      LA    Q         
Sbjct: 858  ---YGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQ--------- 905

Query: 1171 VPDGDGLPTEDNATSLQPAL---QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVID 1227
                 G+  ED A      +   +ILL EDN +NQ+VA ++L ++G+ V +A NG   ++
Sbjct: 906  ---SSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALE 962

Query: 1228 ALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGM 1287
             L    Y LVLMDMQMP MDGI A   IRQ  P   Q  IVAMTAN M GDR+ CL AGM
Sbjct: 963  RLNNNAYALVLMDMQMPEMDGIEATIAIRQN-PRYAQLPIVAMTANVMQGDRERCLQAGM 1021

Query: 1288 DGYISKPISINQL-RKVLQDTSALITSPQAREDIVTLGDKITVVEEQTMVKPTDVTESPL 1346
            + ++ KPI   +L  K+L      + SP A E I           E++ +  +D   S  
Sbjct: 1022 NDHLGKPIEPEELWNKLLHWIP--VDSPLAPETI-----------EESAINTSDPEIS-- 1066

Query: 1347 DPTAIAFLRDD---LCGGDLTLFGEMVACYCQESQKLIEELVQGLEVDDFAVIRRTAH 1401
             P       DD      G  +L+ +M+  +       + E+ Q L   D+    R AH
Sbjct: 1067 IPHIPGLNSDDGLRRVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAH 1124


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  274 bits (700), Expect = 2e-75
 Identities = 157/403 (38%), Positives = 242/403 (60%), Gaps = 32/403 (7%)

Query: 764  LEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSG 823
            L +A   AE A +AK EFLA MSHEIRTPMN +IGM+EL++ TDL  QQ +Y+Q ++ +G
Sbjct: 444  LLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAG 503

Query: 824  ETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQT 883
            E LL IIN+ILDFSK+EA KL LE + F +  ++  +  + G  A AK L L + +DP+ 
Sbjct: 504  ELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRI 563

Query: 884  PARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRIC 943
            P  ++GD++RL QIL NL  NA+KFT +GE+  T++G+          +L   +   ++ 
Sbjct: 564  PPILVGDRLRLSQILINLGNNAVKFTNQGEI--TIRGQ----------LLKTENEQTKLQ 611

Query: 944  FNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEP 1003
            F++ DTGIG+  D+Q +LF+ F+Q ++ST+R+YGGTGLGL IS+ LT++MGG + + S  
Sbjct: 612  FSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVV 671

Query: 1004 GVGSNFRFCILTTAQAPALAE----------------ADSVQQMKGKQVLIVDDNETNRR 1047
            G GS F F +     +PA+A+                  ++ Q++G  +L+V+DNE NR 
Sbjct: 672  GQGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINRE 731

Query: 1048 ILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGK 1107
               D   + GL      +G+ AL         DA ++D+QMP ++G      +RQ    +
Sbjct: 732  FAHDLLTSKGLRVQVANNGQEALT-LLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHR 790

Query: 1108 DLPIILLSSGLVAGADELSV---FQTVLNKPVRQSLIFDSLVN 1147
            +LPII +++  +AG  E ++       L KP++  L+F +L +
Sbjct: 791  NLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAH 833



 Score =  106 bits (264), Expect = 6e-25
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 1149 FQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLVNQKVAHQM 1208
            F  ++ L   +P   Q  L   V   +  P+   A +      ILL EDN +N++ AH +
Sbjct: 677  FHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDL 736

Query: 1209 LNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPRIV 1268
            L + G  V +ANNGQE +  L    YD +LMD+QMP+++G  A R IRQ     R   I+
Sbjct: 737  LTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQ-EYHRNLPII 795

Query: 1269 AMTANAMPGDRQECLDAGMDGYISKPISINQLRKVL 1304
            AMTANAM GD+++ LDAGM+ +++KPI  + L + L
Sbjct: 796  AMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  200 bits (509), Expect = 2e-53
 Identities = 140/407 (34%), Positives = 223/407 (54%), Gaps = 35/407 (8%)

Query: 762  LELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMT-DLNLQQLDYVQTIR 820
            ++L +A   AE+  +AK  F+A MSHE+R+P+N +IG ++L++ T +L ++Q +    I+
Sbjct: 349  VDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQ 408

Query: 821  QSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGID 880
            +SGE LL +IN+ILDFSKIEA K  L    F+L  L++ + +M    A  + +EL +  D
Sbjct: 409  RSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRD 468

Query: 881  PQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTI----LNLP 936
               P  + GD+++LRQIL NL+ NA+KFT +GEVVLT     F  AE    I       P
Sbjct: 469  HDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLT---SNFRNAEQQEVINPETSTEP 525

Query: 937  HPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGV 996
               + + F ++DTG GI       LF++FSQ +S    +  GTGLGL I+++  ++MGG 
Sbjct: 526  KNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGD 584

Query: 997  LTVTSEPGVGSNFRFCILTTAQAPALA-EADSVQQMKG-------KQVLIVDDNETNRRI 1048
            + V+S    G+ F F IL       L+ E +S +++          ++L+VDD   NR++
Sbjct: 585  INVSSVVDQGTTFSFSILVDLGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQL 644

Query: 1049 LQDQCQAWGLVCHCFTSGESALD-WFARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGK 1107
            L      +G      ++G+ A+  W +  P L    +D++MP MDG     +++   +G 
Sbjct: 645  LIKLLAPFGFEIEEASNGQEAIALWESWEPHL--IFMDMRMPVMDGYEATKYIKGQVKGN 702

Query: 1108 DLPIILLSSG---------LVAGADELSVFQTVLNKPVRQSLIFDSL 1145
               ++ L++          L AG D+       L KP R++ IFDSL
Sbjct: 703  ATAVVALTASVLEEEKAIVLSAGCDDF------LRKPFRENTIFDSL 743



 Score = 71.2 bits (173), Expect = 2e-14
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 1187 QPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVM 1246
            QP  +IL+ +D  VN+++  ++L   G+ +  A+NGQE I   E     L+ MDM+MPVM
Sbjct: 627  QPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVM 686

Query: 1247 DGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            DG  A ++I+  +       +VA+TA+ +  ++   L AG D ++ KP   N +
Sbjct: 687  DGYEATKYIKGQVK-GNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTI 739


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  197 bits (500), Expect = 3e-52
 Identities = 114/249 (45%), Positives = 157/249 (63%), Gaps = 9/249 (3%)

Query: 762  LELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLD-YVQTIR 820
            ++L +A  +AE ANR K EFLA +SHEIRTPMN ++G  +LL+  DL+L Q   Y+  I 
Sbjct: 584  IKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIG 643

Query: 821  QSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGID 880
             S + LL +I+DILD SKIEA KLV+  +  +LR +I  + ++F   A +K L LT  ID
Sbjct: 644  SSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQID 703

Query: 881  PQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSH 940
                  I  D VRLRQIL NL+GNALKFTE+G+V + +  E      S  T ++L     
Sbjct: 704  ETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQ-VRSQGTYISL----- 757

Query: 941  RICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVT 1000
                 + DTGIGI  + Q ++F  F+Q    +TRKYGGTGLGL I++RLT ++GG ++++
Sbjct: 758  --AIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLS 815

Query: 1001 SEPGVGSNF 1009
            S  G GS F
Sbjct: 816  SRLGEGSTF 824


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  184 bits (467), Expect = 2e-48
 Identities = 111/269 (41%), Positives = 165/269 (61%), Gaps = 23/269 (8%)

Query: 764  LEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLI--MTDLNLQQL-DYVQTIR 820
            LE A+  AEAAN  K  FLA MSHE+RTP+N +IG +E+LI    DL+ ++L   +  I 
Sbjct: 424  LELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKIL 483

Query: 821  QSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGID 880
            +SG++LL +IND+LD SKIEA K+ L  + F L+ LI  +L+   P+ +  + +L   I 
Sbjct: 484  RSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEIS 543

Query: 881  PQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSH 940
             ++   + GD ++LRQ + NL+ NA KFT+ G +   V+    D  +             
Sbjct: 544  LESE-EVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDW------------ 590

Query: 941  RICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVT 1000
             + F ++DTGIG+  ++  +LF+ F+Q DSSTTRKYGGTGLGL I+++  QMMGG + +T
Sbjct: 591  -LSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLT 649

Query: 1001 SEPGVGSNFRFCILTTAQAPALAEADSVQ 1029
            SE GVGS+F      T + P  A+ +S +
Sbjct: 650  SEIGVGSSF------TIKLPKYAQLNSAK 672


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  182 bits (463), Expect = 5e-48
 Identities = 140/463 (30%), Positives = 221/463 (47%), Gaps = 43/463 (9%)

Query: 559  MGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRR-SLQPTLIFQTAARQVGNVFA 617
            MG      + T R  + D L   +  I  +  I++ IRR SL    I+Q A   +G+   
Sbjct: 1    MGQPSDLTESTLRFSSLDPLHPPV--ISQLTAIAKRIRRNSLHLPTIWQEAVDSIGSTLG 58

Query: 618  VSRCLIHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYDPTIIQGDRAMAVVDLDQ 677
            VSRCL+    +  +  + + AE+     T+  A  +  E      + +  + + + ++  
Sbjct: 59   VSRCLLLT-KDFQSRHLQIEAEFCQPTVTAFAALIVPEESEIWRQLFEQHQPITLYNVQ- 116

Query: 678  DLNSTHTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCD-RQRVWTADXXXXXXXXXXQ 736
                      +Q   +       T YQ +ANG + L Q       W  +          Q
Sbjct: 117  ----------FQGEDLGGLWIFPTLYQDQANGYLCLQQVGPAPGPWHPETEALLQELAEQ 166

Query: 737  MGIXXXXXXXXXXXXXXXXXXXXXNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGV 796
             G                        EL +AT AAE A+R K EFLA  +HE+RTP+NG+
Sbjct: 167  TGTAIAHATLYQ--------------ELTQATKAAEEASRLKSEFLASTTHELRTPLNGI 212

Query: 797  IGMTELLI--MTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELR 854
            IG   L++  M D   ++ ++V+   QS   LL +INDILD +KIEA ++ +E +  +  
Sbjct: 213  IGFLRLILDDMADSEAEKHEFVEEAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFS 272

Query: 855  PLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEV 914
             +++       P A+ K L        Q P  + G+Q  L Q++ N++GNA+KFT +G +
Sbjct: 273  EVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGI 332

Query: 915  VLTVKGEPFDPAESYHTIL--NLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSST 972
             + V+  P        T+L   +  P   +  ++ DTGIG+ L++Q +LFK F Q+D S 
Sbjct: 333  TVAVEVMP-------RTVLWEGVQKPG-LLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSH 384

Query: 973  TRKYGGTGLGLVISQRLTQMMGG-VLTVTSEPGVGSNFRFCIL 1014
            ++ YGGTGLGLVISQ+L + MGG V   +   G+GS   F +L
Sbjct: 385  SKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVTFTVL 427


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  180 bits (456), Expect = 3e-47
 Identities = 136/387 (35%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 764  LEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSG 823
            L +A  AA+AANRAK EFLA +SHE+RTP+N +IG ++LL            +  I +SG
Sbjct: 149  LTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSG 208

Query: 824  ETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQT 883
            E LL +INDIL+ SKIEA +  L  +  +   L++ +  +F   A+ K L L     P+ 
Sbjct: 209  EHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEV 268

Query: 884  PARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVK---GEPFDPAESYHTILNLPHPSH 940
            P  I  D  +LRQ+L NL+ NA+KFT +G V L VK       D  +     L+      
Sbjct: 269  PEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLH------ 322

Query: 941  RICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVT 1000
               F + DTG GI     D LF  F+Q ++   +   G GLGL ISQ+  Q+MGG + V 
Sbjct: 323  ---FLVSDTGPGIAAHEMDELFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVR 378

Query: 1001 SEPGVGSNFRFCI-LTTAQAPALAEADSVQQMK-----GKQVLIVDDNETNRRILQDQCQ 1054
            S+   GS F F I +    AP      S   +       ++VL+VDD   +R +L+    
Sbjct: 379  SKVDQGSAFFFAIPVQVMAAPKPTPETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLT 438

Query: 1055 AWGLVCHCFTSGESALD-WFARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGKDLPIIL 1113
            + G V     +GE A+  W +  P +   ++D+QMP +DG +    ++   QG+   II 
Sbjct: 439  SLGFVVQEAENGEMAIALWESWHPQV--ILMDMQMPVLDGRSTTQKIKASPQGQHTIIIA 496

Query: 1114 LSSGLVAG--ADELSV-FQTVLNKPVR 1137
            L++    G  A+ LS      L+KP R
Sbjct: 497  LTASAFEGERAEILSAGCDDFLSKPFR 523



 Score = 76.6 bits (187), Expect = 5e-16
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 1180 EDNATSLQPALQ----ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYD 1235
            E +A +L P  Q    +L+ +D   ++ +  Q+L +LG+ V  A NG+  I   E     
Sbjct: 404  ETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQ 463

Query: 1236 LVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPI 1295
            ++LMDMQMPV+DG +  + I+ + P  +   I+A+TA+A  G+R E L AG D ++SKP 
Sbjct: 464  VILMDMQMPVLDGRSTTQKIKAS-PQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPF 522

Query: 1296 SINQLRKVLQDTSALITSPQAR 1317
               +L  +L    A+    Q +
Sbjct: 523  RPEELIALLAKHLAVALPSQGQ 544


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  155 bits (392), Expect = 8e-40
 Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 18/247 (7%)

Query: 774  ANRAKGEFLAMMSHEIRTPMNGVIGMTELL---IMTDLNLQQLDYVQTIRQSGETLLTII 830
            A + K EFLA MSHE+RTP+N ++GM E L   +   LN +Q+  ++ +  SG  LL++I
Sbjct: 414  ATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVENSGRHLLSLI 473

Query: 831  NDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGD 890
            NDILD SKIEA ++ L+     +  L+   L      A  K + L+  I P  P  +L D
Sbjct: 474  NDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEIIPNLPD-VLVD 532

Query: 891  QVRLRQILSNLIGNALKFTEKGEVVLT----VKGEPFDPAESYHTILNLPHPSHRICFNL 946
            + RL Q+L NL+ NA+KFT +G  V+     +K +  + ++S            ++ F +
Sbjct: 533  KRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQS----------PPQLSFTV 582

Query: 947  RDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVG 1006
             DTGIGI  DR + +F+ F Q+DS+  R+Y GTGLGL + +++ ++ GG +TVTS+   G
Sbjct: 583  FDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEG 642

Query: 1007 SNFRFCI 1013
            S F+  I
Sbjct: 643  SRFKITI 649


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  146 bits (369), Expect = 4e-37
 Identities = 132/510 (25%), Positives = 218/510 (42%), Gaps = 61/510 (11%)

Query: 575  QDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQV 634
            QD LQ   +Q+ L+ ++  +IR+SL  + I   A   V     V R +I+ +  +     
Sbjct: 151  QDSLQA--SQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLT 208

Query: 635  PVVAEYLGGQFTSLLAGEIAVEQAYDPTI-----------------------IQGDRAMA 671
            P+    +         GE+  E    P I                       ++G   +A
Sbjct: 209  PLEENQIPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKG-AVVA 267

Query: 672  VVDLDQDLNSTHTKA-FYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADXXXXX 730
            V D++   +S++      QR+QV++ L      +G+  G++  HQC   R W        
Sbjct: 268  VSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFL 327

Query: 731  XXXXXQMGIXXXXXXXXXXXXXXXXXXXXXNL----ELEKATWAAEAANRAKGEFLAMMS 786
                  + +                      +    EL     AA+AAN  K +F+  +S
Sbjct: 328  GQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNIS 387

Query: 787  HEIRTPMNGVIGMTELLI------MTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIE 840
            HE+RTP+  +IG++  L+       +    +Q  Y+  I+++G+ LL  IN I+  S++E
Sbjct: 388  HELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLE 447

Query: 841  ADKLVLETQAFELRPLIETVLEMFGPIA--RAKHLELTYGIDPQTPARILGDQVRLRQIL 898
            + +  L  Q+F L  L +TV+     +A  +  +LEL Y I+     +   DQ RL QIL
Sbjct: 448  SGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQD-QFCADQERLDQIL 506

Query: 899  SNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQ 958
            + L+ NALKFT               PAE    IL +   S++  F + DTGIGI   + 
Sbjct: 507  TQLLNNALKFT---------------PAEG-TVILRIWKESNQAIFQVEDTGIGINEQQL 550

Query: 959  DRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI----- 1013
              LF++F     S T  Y   G+GL ++++L ++ GG + V S PG G+ F   I     
Sbjct: 551  PVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNF 610

Query: 1014 LTTAQAPALAEADSVQQMKGKQVLIVDDNE 1043
              T +     + D+        ++I  D E
Sbjct: 611  PPTTKGQVQDKLDAAMPFNSSVIVIEQDEE 640


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  127 bits (320), Expect = 2e-31
 Identities = 87/231 (37%), Positives = 118/231 (51%), Gaps = 21/231 (9%)

Query: 782  LAMMSHEIRTPMNGVIGMTELL---IMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSK 838
            L+ + HE RTP+  +IG   +L   +   LN +Q  YVQ    S E LL+++ND LD SK
Sbjct: 190  LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 839  IEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQIL 898
            I+A    L  +   +  L   V+ M    A+ K L L   ID       + DQ R +QIL
Sbjct: 250  IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308

Query: 899  SNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQ 958
             NL+ N +KFT KG V L VK                      + F++ DTGIGI  + Q
Sbjct: 309  INLLSNGVKFTPKGSVTLAVKAT-----------------DKALIFSVIDTGIGIDPEDQ 351

Query: 959  DRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNF 1009
              LF+ F Q+    +    GTGLGL +S+RL Q+ GG + +TS PGVGS F
Sbjct: 352  RDLFQPFKQISHPPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCF 402


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  121 bits (303), Expect = 2e-29
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 24/237 (10%)

Query: 775  NRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNL---QQLDYVQTIRQSGETLLTIIN 831
            N AK +F+ ++SHE RTP+  +IG  ELL      L   ++  Y+  I+ S + L  +I+
Sbjct: 937  NEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLID 996

Query: 832  DILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKH-LELTYGIDPQTPARILGD 890
            D+L  S+ +A+K+ +E     LR L   ++E F     ++H  EL Y + P   + +  D
Sbjct: 997  DVLSISRYDANKIEIELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLV--D 1054

Query: 891  QVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTG 950
               LR IL N++ NA+K++  G  +                 L++      + F +RD G
Sbjct: 1055 VRLLRHILENILSNAIKYSAPGSTIT----------------LDISKDEEHLLFQVRDEG 1098

Query: 951  IGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGS 1007
            IGIPL  Q++LF++F +  +S      GTGLGL I +R  +  GG + V S PG G+
Sbjct: 1099 IGIPLQDQEKLFEAFHR--ASNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGT 1153



 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 304 SKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDTEGVITYVNDKFVEV 363
           S +S+ L E I+++Q     +  T QE   +    D    + +   + ++  VN + VE+
Sbjct: 527 SSNSQLLQEIIEKEQVS---ITLTTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVEL 583

Query: 364 SGYSREELIGNTHRLVSSGYHSPEFFQQ---FWQTIRAGKVWH-GQINNRAKAGNTYWVD 419
           SGY +EELIG  H L+     +PEF+ Q   FW+T++  ++     +    K+G    VD
Sbjct: 584 SGYDQEELIG--HSLLDLRLLTPEFYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVD 641

Query: 420 STVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDKKM 479
            +      +N +  Q   I  +IT  K  +  L+      R + +     L+V  + ++ 
Sbjct: 642 ISASVITYENHSIVQ--CIVHDITLQKTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQF 699

Query: 480 TFV 482
            F+
Sbjct: 700 PFL 702


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score =  105 bits (263), Expect = 8e-25
 Identities = 111/434 (25%), Positives = 191/434 (44%), Gaps = 19/434 (4%)

Query: 304 SKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAITDT-EGVITYVNDKFVE 362
           +K ++QL + I+ + + +E L+    +LA     ++ +    I+ T +G IT  N+    
Sbjct: 171 AKINQQLEQEIEDKTRAKEDLEKNKDQLAQLAAIVESSQDAIISKTLDGNITSWNESAER 230

Query: 363 VSGYSREELIGN-THRLVSSGYHSPEFFQQFWQTIRAG-KVWHGQINNRAKAGNTYWVDS 420
           + GY+ EE+IG+   +L+       E      + IR G ++   +   + K G    V  
Sbjct: 231 LFGYTAEEMIGSHITKLIPEELILEE--DLIAECIRQGQRINTYETQRQRKDGTKIDVAL 288

Query: 421 TVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARFRMMADTSPIMLWVADQDK-KM 479
           T+ P  D++ N      I  +IT+    E +LRES+     +A+ SP +L++ D    K 
Sbjct: 289 TISPIRDEHKNVVGASKIVRDITARLDVENALRESQYFIEKLANYSPQILYILDPIAWKN 348

Query: 480 TFVNQSWLEFRGATLAEESGNG---YLEGIHPDDKG--HYLGVYSQAFGDXXXXXXXXXX 534
            +VN    E  G T  E    G    L  +HPDD    +    + Q   +          
Sbjct: 349 IYVNYQSFEILGYTPEEFKNGGTELLLNIVHPDDIPTLYENKNFWQKSQEGQVLTTEYRM 408

Query: 535 XXVDQQYRWIVNVGVPRYLED-GKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQ 593
              +  +RW+ +  V    +D G+    +G+  DI+D K+ +  L ++  +  L+R+I+Q
Sbjct: 409 RHKNGSWRWLRSREVVFARDDYGQVTKVLGTAQDISDSKEQEQRLYEQGRRESLLREITQ 468

Query: 594 EIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQV-PVVAEYLGGQFTSLLAG- 651
            IR+SL    IF T  +++       R +I  +S  +   V  +VAE +   F  ++   
Sbjct: 469 RIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQFSPDSDFSVGNIVAESVLAPFKPIINSA 528

Query: 652 --EIAVEQAYDPTIIQGDRAMAVVDLDQD-LNSTHTKAFYQRFQVKSFLAVRTSYQGKAN 708
             E      Y     QG R   + D+ Q  L   H   F  R QV++ L +         
Sbjct: 529 IEETCFSNNYAQRYQQG-RIQVIEDIHQSHLRQCHID-FLARLQVRANLVLPLINDAILW 586

Query: 709 GIIALHQCDRQRVW 722
           G++ +HQCD  RVW
Sbjct: 587 GLLCIHQCDSSRVW 600


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 80.5 bits (197), Expect = 3e-17
 Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 24/255 (9%)

Query: 763  ELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLD----YVQT 818
            E+  A    +  +R K  F +M SHE RTP++  +   +LL  +++     D     +  
Sbjct: 54   EVRLALEREKELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHR 113

Query: 819  IRQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYG 878
            I+ S + ++ +++DIL  ++ EA KL       +L+ L +  +E    ++ +      + 
Sbjct: 114  IQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEI-QLSVSDQYYFDFI 172

Query: 879  IDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHP 938
               Q   + L D+  +R ILSNL+ NA+K++  G  +                 + L   
Sbjct: 173  CSAQ-DTKALVDERLVRSILSNLLSNAIKYSPGGGQIK----------------IALSLD 215

Query: 939  SHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLT 998
            S +I F + D GIGI  + Q ++F+ F +      R   GTGLGL+++++   +  G + 
Sbjct: 216  SEQIIFEVTDQGIGISPEDQKQIFEPFHR--GKNVRNITGTGLGLMVAKKCVDLHSGSIL 273

Query: 999  VTSEPGVGSNFRFCI 1013
            + S    G+    C+
Sbjct: 274  LKSAVDQGTTVTICL 288


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 79.3 bits (194), Expect = 8e-17
 Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 4/126 (3%)

Query: 1186 LQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPV 1245
            ++   ++LL EDN +N+ +  + L   GY V IA +G++ +     +   L+LMDM +P+
Sbjct: 1    MESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPI 60

Query: 1246 MDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305
            +DG TA + I+   P      I+A+TA+AM  DR+  + AG D Y +KPI   +++++LQ
Sbjct: 61   IDGWTATKQIKGH-PDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPI---EIKRLLQ 116

Query: 1306 DTSALI 1311
               ALI
Sbjct: 117  KMEALI 122


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 79.0 bits (193), Expect = 1e-16
 Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 26/254 (10%)

Query: 763  ELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMT---DLNLQQLDYVQTI 819
            EL +     E +N    +F  + SH+++ P+N V    +LL M     L+    D++   
Sbjct: 514  ELAQLARNLERSNADLKKFAYIASHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFA 573

Query: 820  RQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGI 879
                  + T+I+DIL ++K++     L     +++ +++  L            E+  G 
Sbjct: 574  VTGVSLMQTLIDDILTYAKVDTQYAQLTFT--DVQEVVDKALANLKQRIEESGAEIEVGS 631

Query: 880  DPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPS 939
             P     ++ DQ++L Q+  NLI N +KF       + + G+  + A             
Sbjct: 632  MPA----VMADQIQLMQVFQNLIANGIKFAGDKSPKIKIWGDRQEDAW------------ 675

Query: 940  HRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTV 999
                F ++D GIGI     +R+F  F ++   T  +Y GTG+GL I +++ +   G + +
Sbjct: 676  ---VFAVQDNGIGIDPQFFERIFVIFQRLH--TRDEYKGTGMGLAICKKIIEGHQGQIWL 730

Query: 1000 TSEPGVGSNFRFCI 1013
             S PG GS F F I
Sbjct: 731  ESNPGEGSTFYFSI 744


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 64.3 bits (155), Expect = 3e-12
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 1177 LPTEDNATSLQPALQILLAEDNLVNQKVAHQMLNNLG-YPVAIANNGQEVIDALEKKFYD 1235
            LP  D  T++   + +LL +D    ++     L + G + V +A N  E  D L+     
Sbjct: 43   LPLHDCITAMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPA 102

Query: 1236 LVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPI 1295
            LV+ D+ MP +DG    + +R+    +  P +V +TA  M GDR +    G D ++SKP 
Sbjct: 103  LVISDIMMPQVDGYQFLQKLREDARFQSLP-VVFLTARGMTGDRIQGYQTGCDAFLSKPF 161

Query: 1296 SINQLRKVLQDTSALITSPQARED-------IVTLGDKITVVEEQTMVKPTDVTESPLDP 1348
              ++L  ++++   L+   QA  D       +  +  +I  ++EQ + +P+ +  +P  P
Sbjct: 162  DPDELEAIVRN---LLARQQASSDAGSESAKLQEIYQEIRALKEQ-IGQPSGIHTTP-SP 216

Query: 1349 TAIAFLRDDLCGGDLT---LFGEMVACYCQESQKLIEELVQGL 1388
              + F   +    DL    L  + +A   + S + +E+ V  L
Sbjct: 217  IKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRL 259


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGI 1249
            ++ILL ED+L   +   + L++  Y V IA +     D   +  YDLV++D+ +P +DGI
Sbjct: 1    MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60

Query: 1250 TACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            T C+  R    L     I+ MTA     D+   LDAG D Y+ KP+ + +L
Sbjct: 61   TLCQKWRSHSYL---MPILMMTARDTINDKITGLDAGADDYVVKPVDLGEL 108


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 60.8 bits (146), Expect = 3e-11
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251
            ILL +D   N ++   +L NLGY V    +G+  +  L+ K  DL+L+D++MP MDG   
Sbjct: 11   ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            C  I++   L+  P I+ ++A     D+ +  + G   YI+KP  I ++
Sbjct: 71   CEMIKKEEELQDIP-IIFISALGDTFDKVKAFECGGVDYITKPFQIEEV 118



 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 1026 DSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWF-ARCPDLDAAIL 1084
            ++  + KG  +L+VDD   N ++L D     G      TSG+ AL     + PDL   +L
Sbjct: 2    ENTDEKKGN-ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDL--ILL 58

Query: 1085 DLQMPNMDGITLAHHLRQFAQGKDLPIILLSS 1116
            D++MP+MDG  +   +++  + +D+PII +S+
Sbjct: 59   DIKMPDMDGYQVCEMIKKEEELQDIPIIFISA 90


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 60.5 bits (145), Expect = 4e-11
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 1182 NATSLQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDM 1241
            N T       IL+ ED+    ++  + L    +   + N+G+  +   +++  DL+++D+
Sbjct: 4    NRTEFIAMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDL 63

Query: 1242 QMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
             +P +DG+  C  IRQ  P  + P I+ +TA     DR   L  G D Y+ KP S  +L
Sbjct: 64   MLPKLDGLEVCTRIRQQ-PGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREL 121



 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 12/102 (11%)

Query: 1036 VLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFA-RCPDLDAAILDLQMPNMDGI 1094
            +LIV+D++   +++++  +     C     GE+ L  F  + PDL   +LDL +P +DG+
Sbjct: 14   ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDL--IVLDLMLPKLDGL 71

Query: 1095 TLAHHLRQFAQGKDLPIILLSS---------GLVAGADELSV 1127
             +   +RQ    KD  I++L++         GL  GAD+  V
Sbjct: 72   EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLV 113


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 59.3 bits (142), Expect = 8e-11
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 1194 LAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACR 1253
            + +D    +++    L+ +GY V  A +G+E I    +   DLV++D+ MP +DG   C+
Sbjct: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 1254 HIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
             +R+    E    I+ +TA     DR   L+ G D Y+ KP S  +L
Sbjct: 61   ELRK----ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103



 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 1038 IVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPNMDGITLA 1097
            +VDD  + RRIL+ +    G        GE A+  F    D D  +LD+ MP +DG  + 
Sbjct: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHES-DPDLVVLDVMMPKLDGYGVC 59

Query: 1098 HHLRQFAQGKDLPIILLS---------SGLVAGADELSV 1127
              LR   +  D+PII+L+         +GL  GAD+  V
Sbjct: 60   QELR---KESDIPIIMLTALGDVADRITGLELGADDYVV 95


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 13/141 (9%)

Query: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF--YDLVLMDMQMPVMD 1247
            ++ILL ED         ++L +  Y V    +G +  D LE ++  Y L ++D  +P + 
Sbjct: 1    MRILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLS 60

Query: 1248 GITACRHIR---QTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVL 1304
            G+  C+ +R    +LP      ++ +TA   P +R E LDAG D Y++KP  + +L   L
Sbjct: 61   GLELCQKLRTQGNSLP------VLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARL 114

Query: 1305 QDTSALITSPQAREDIVTLGD 1325
            +       SPQ +  I+TLG+
Sbjct: 115  RALQR--RSPQFQPQILTLGN 133


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 56.6 bits (135), Expect = 5e-10
 Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251
            +LL ED+   +++   +L + G+ V IA +G E ++ L+    DLV++D+ MP M+G   
Sbjct: 30   VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            CR I+   P  +   ++  ++     DR   +  G D YI+KP    +L
Sbjct: 90   CRRIKSD-PKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMEL 137


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251
            +LL +D+     +    L   GY V  A NG+E +D L     D+++ D+ MP MDG   
Sbjct: 10   LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305
               +RQ   +   P ++ ++A     +R + L+ G D Y++KP    +L   +Q
Sbjct: 70   IEQVRQNPDISWIP-VMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQ 122


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251
            ILL +D     +   + L + G+ + +A+ G+  +       YDL+++D  +P + G+  
Sbjct: 4    ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSALI 1311
            CR IR    L     ++ +TA     DR   LDAG D Y+ KP    +LR++L    AL+
Sbjct: 64   CRQIR---ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF---ELRELLARVRALL 117

Query: 1312 TSPQAREDIV-TLG 1324
                  E I  TLG
Sbjct: 118  RRQSHGETITETLG 131


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 52.8 bits (125), Expect = 8e-09
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250
            ++LL +D++   ++   +L   G+ V  ANNG E +  L +  Y LVL+D+ MP ++GI 
Sbjct: 3    KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNES-YKLVLLDVMMPKLNGIE 61

Query: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
              + IR+   +     ++ +TA     DR   L+ G D  + KP +  +L
Sbjct: 62   TLKEIRKVSNVP----VMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
            (arcA)
          Length = 236

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250
            +IL+ ED +V +     +    GY V  A NG E+   L     +LV+MD+ +P  +G+ 
Sbjct: 5    KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
              R +R+ L L     ++ +T      D+   L+ G D Y++KP +  +L
Sbjct: 65   LARELREELSLP----LIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 1179 TEDNATSLQPAL--QILLAEDNLVNQKVAHQML--NNLGYPVAIANNGQEVIDALEKKFY 1234
            T  +   ++P L  +IL+ ED+ + Q    Q L  +     +   +NG   +        
Sbjct: 4    TSPHRVKIEPCLPMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNP 63

Query: 1235 DLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKP 1294
            DL++MD+ +P +DGI A + I+QT P   Q  IV +T++ +P +    L +G D Y  K 
Sbjct: 64   DLIVMDIGLPGLDGIEATKQIKQTSP---QIHIVVLTSHTLPNEIIAALSSGADAYCVKG 120

Query: 1295 ISINQL 1300
             ++ +L
Sbjct: 121  ATLERL 126


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 10/122 (8%)

Query: 1186 LQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEK-------KFYDLVL 1238
            + P+ +IL+ ED +  ++     L   GY V   ++G++ +  L++          DL++
Sbjct: 27   IPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLII 86

Query: 1239 MDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISIN 1298
            +D+ +P ++G+  CR +R     +  P I+ ++A     ++   L+ G D YI+KP S+ 
Sbjct: 87   LDIMLPQVNGLDVCRSLR--FGGDNTP-ILIVSAKGSEMEKVTGLEVGADDYITKPFSLK 143

Query: 1299 QL 1300
            +L
Sbjct: 144  EL 145


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250
            +IL+ +D+     +    L   GY V  A +G +      +   DL+++D+ +P +DG T
Sbjct: 3    RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL----RKVLQD 1306
             C+ +R+       P ++ +TA     D+ +  D+G D Y++KP  + ++    R +L+ 
Sbjct: 63   VCQRLRRDERTADIP-VLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121

Query: 1307 TSALITSPQA--REDIVTLGDKITVVEEQ 1333
            T  +   PQA    +I+  G  +T+V E+
Sbjct: 122  TDRI---PQAAKHSEILNQG-PLTLVPER 146


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 1189 ALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDG 1248
            A +IL+ +D+   +      L   G+ V +A NG+E +    +   ++VL+D  MPVMDG
Sbjct: 11   AAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70

Query: 1249 ITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRK 1302
               C+ + + +     P ++ +T            +AG   Y++KPI    LR+
Sbjct: 71   FACCQALMK-IYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQ 123


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (ygiX)
          Length = 221

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)

Query: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251
            +L+ +DNL+   +    L  LG+ V    +G+  + AL    YD V++D+ +P +DG+  
Sbjct: 4    LLIEDDNLIGNGLQIG-LTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305
             +  R      +   ++ +TA     +R + L +G D Y+ KP ++ ++   LQ
Sbjct: 63   LQQWRSN---HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQ 113


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 1189 ALQILLAEDN-LVNQKVAHQMLNNLGYPVA-IANNGQEVIDALEKKFYDLVLMDMQMPVM 1246
            +++ILL ED+ L    +  ++    G  VA  A +G+  I  + ++ +D+V++D+ +P +
Sbjct: 7    SIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGI 66

Query: 1247 DGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQD 1306
             GI AC  I++  P   Q  ++ +T+++ P      ++A   GY  K ++   L   ++ 
Sbjct: 67   GGIEACHQIKKIHP---QLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123

Query: 1307 TSA 1309
             +A
Sbjct: 124  VAA 126


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
            regulatory protein (phoB)
          Length = 231

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250
            +IL+ ED    +++    L+   Y V  A++ +  I+ + K+   L+L+D  +P   GI 
Sbjct: 4    KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKI-KENPKLILLDWMLPGRSGIQ 62

Query: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPIS 1296
              ++I++       P I+ +TA +   D   CL+AG D YI+KP S
Sbjct: 63   FIQYIKKQESYAAIP-IIMLTAKSTEEDCIACLNAGADDYITKPFS 107


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 1190 LQILLAEDNLVNQKVAHQMLNNLG--YPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMD 1247
            +++L+A+D+ + ++    ++N       +A A NG++ I   E+   D+ LMD++MP ++
Sbjct: 7    IRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVE 66

Query: 1248 GITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305
            G+ A   I     + +  RI+ +T      D    L AG  GY+ K    ++L   ++
Sbjct: 67   GVAA---ISAICAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIR 121


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 1191 QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGIT 1250
            ++L+ E+     +     L   GY V++A +G +     ++   DL++++  +P M G+ 
Sbjct: 4    RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 1251 ACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQ 1299
             CR +R+   +  +  I+ +TA     +R   LDAG D YI KP + ++
Sbjct: 64   LCRRLRE---MGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDE 109


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 1190 LQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF--YDLVLMDMQMPVMD 1247
            +++LL ED         + L    Y V    +G      L++ +  Y L + D  +P + 
Sbjct: 1    MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 1248 GITACRHIR---QTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQL 1300
            G+  C+ +R    +LP      I+ +TA     DR E LDAG D Y+ KP  + +L
Sbjct: 61   GLELCQKLRGQRSSLP------ILMLTAKDQIADRVEGLDAGADDYLIKPFGMAEL 110


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 18/168 (10%)

Query: 570 DRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEA 629
           +R++ +  ++++  +   + +I+Q IR+SL    +  T   +V  +  V R LI+   + 
Sbjct: 28  ERRRIEISIKQQTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQD 87

Query: 630 TTLQVPVVAEYLGGQFTSLLAGEIAVEQ---AYDPTIIQGDRAMAVVDLDQDLNSTHTKA 686
            T     + E +   + S+L    + E     Y     +G +  A+ D+DQD        
Sbjct: 88  GTGSA--ITESVNANYPSILGRTFSDEVFPVEYHQAYTKG-KVRAINDIDQDDIEICLAD 144

Query: 687 FYQRFQVKSFLAVRTSYQGKAN------------GIIALHQCDRQRVW 722
           F ++F VKS L V      +A+            G++  HQC   R W
Sbjct: 145 FVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPW 192


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,545
Number of Sequences: 78
Number of extensions: 5738
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 39
Number of HSP's better than  0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 87
length of query: 1462
length of database: 48,235
effective HSP length: 75
effective length of query: 1387
effective length of database: 42,385
effective search space: 58787995
effective search space used: 58787995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002618 slr1760 
         (315 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002618 slr1760                                            630   0.0  
SYNE-PCC-01-001133 sll1673                                            188   2e-50
SYNE-PCC-01-000542 sll0821                                            177   5e-47
SYNE-PCC-01-002033 slr0947                                             78   4e-17
SYNE-PCC-01-001306 sll1905                                             75   3e-16
SYNE-PCC-01-001461 slr0115                                             73   1e-15
SYNE-PCC-01-000414 sll0649                                             65   2e-13
SYNE-PCC-01-002788 slr1982                                             63   1e-12
SYNE-PCC-01-000800 sll1228                                             62   2e-12
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   62   3e-12
SYNE-PCC-01-002879 slr2104                                             61   4e-12
SYNE-PCC-01-002086 slr1042                                             60   9e-12
SYNE-PCC-01-002731 slr1909                                             60   1e-11
SYNE-PCC-01-000242 sll0396                                             59   3e-11
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    57   8e-11
SYNE-PCC-01-001132 sll1672                                             57   1e-10
SYNE-PCC-01-002486 slr1584                                             56   2e-10
SYNE-PCC-01-002489 slr1588                                             55   2e-10
SYNE-PCC-01-002873 slr2098                                             55   3e-10
SYNE-PCC-01-002672 slr1837                                             55   3e-10
SYNE-PCC-01-001437 slr0081                                             55   3e-10
SYNE-PCC-01-001575 slr0312                                             55   4e-10
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    55   4e-10
SYNE-PCC-01-002221 slr1213                                             54   5e-10
SYNE-PCC-01-000523 sll0797                                             53   1e-09
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    53   1e-09
SYNE-PCC-01-000877 sll1330                                             52   3e-09
SYNE-PCC-01-000518 sll0789                                             50   1e-08
SYNE-PCC-01-002635 slr1783                                             49   2e-08
SYNE-PCC-01-002617 slr1759                                             49   2e-08
SYNE-PCC-01-000608 sll0921                                             48   5e-08
SYNE-PCC-01-001075 sll1592                                             47   6e-08
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    44   7e-07

>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score =  630 bits (1624), Expect = 0.0
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 1   MNLPQPIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVL 60
           MNLPQPIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVL
Sbjct: 1   MNLPQPIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVL 60

Query: 61  LDAVMPVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAV 120
           LDAVMPVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAV
Sbjct: 61  LDAVMPVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAV 120

Query: 121 LRQRVKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYP 180
           LRQRVKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYP
Sbjct: 121 LRQRVKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYP 180

Query: 181 FSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNT 240
           FSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNT
Sbjct: 181 FSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNT 240

Query: 241 DLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYL 300
           DLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYL
Sbjct: 241 DLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYL 300

Query: 301 YEAKAQGRNRLVSGR 315
           YEAKAQGRNRLVSGR
Sbjct: 301 YEAKAQGRNRLVSGR 315


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score =  188 bits (478), Expect = 2e-50
 Identities = 93/189 (49%), Positives = 129/189 (68%)

Query: 125 VKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYPFSIL 184
           V+ +  + R++ +L++ NQ L+ LA +D LT +ANRR+ + +L  EW    REQ P S++
Sbjct: 264 VRDITDRKRMELELQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLI 323

Query: 185 LCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNTDLQG 244
           L DIDYFK YND YGHQ GDDCLQ+VA  L  +  R  DL ARYGGEEF+IVLPNT+ Q 
Sbjct: 324 LVDIDYFKAYNDLYGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQD 383

Query: 245 AIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAK 304
           A+ + E++   I  LAIPH  S+++ +VT+SIG +S IP       +++  ADQ LY AK
Sbjct: 384 ALAMAENMLQAIAALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAK 443

Query: 305 AQGRNRLVS 313
           +QGRNR ++
Sbjct: 444 SQGRNRAIA 452



 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 3/141 (2%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73
           IL+VDD       L   L   G+ V   T+G+ AL      +P+++LLD  MP MDG+  
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQNR 133
           C+ + K  +     ++ I+ L D     +AFE G +DY+TKP     + + V R+  Q  
Sbjct: 71  CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ---IEEVVARIEGQFT 127

Query: 134 LQHQLESVNQMLERLAKVDQL 154
           +Q Q  ++ + + +  + +++
Sbjct: 128 IQRQRIALKREVRKRREAEEV 148


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score =  177 bits (448), Expect = 5e-47
 Identities = 90/190 (47%), Positives = 123/190 (64%), Gaps = 1/190 (0%)

Query: 121  LRQRVKRLLYQNRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYP 180
            L  +V   ++Q  L  QLE+ N  L++++ +D LTQ+ NR   +  L+ EW    R + P
Sbjct: 1072 LATQVAIAIHQGELYEQLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREP 1131

Query: 181  FSILLCDIDYFKNYNDHYGHQGGDDCLQQVAKALTRVVHRPKDLAARYGGEEFLIVLPNT 240
             ++LLCD+D+FK +ND+YGH  GD CL+++A A+ +V  RP DL ARYGGEEF I+L  T
Sbjct: 1132 LALLLCDVDFFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSET 1191

Query: 241  DLQGAIHIGEDIQAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYL 300
             L+GAI++ E +Q E+  LAIPH  S    HVTLSIG A   P    +   LV AAD  L
Sbjct: 1192 SLEGAINVTEALQVEVANLAIPHTVSG-TGHVTLSIGIAVYTPERHINPNALVKAADLAL 1250

Query: 301  YEAKAQGRNR 310
            YEAKA+GRN+
Sbjct: 1251 YEAKAKGRNQ 1260



 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 16/177 (9%)

Query: 141 VNQMLERLAKVDQLTQLAN----RRQLELFLDTEWSEAIREQYPFSILLCDIDYFKNYND 196
           V +++ +    D LTQL N     RQL L L     +A+ E     +L+  +D FK  N+
Sbjct: 423 VTRLITQQTAYDPLTQLPNWIIFNRQLTLAL----LDALYEGKMVGVLVIAMDRFKRINE 478

Query: 197 HYGHQGGDDCLQQVAKALTRVVH---RPKDLAARYGGEEFLIVLPN-TDLQGAIHIGEDI 252
            +GH+ GD  LQ+VA  L + +        L +R+ G+ F I+L   +D Q  I + E +
Sbjct: 479 SFGHKTGDGLLQEVADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERL 538

Query: 253 QAEITRLAIPHVQSAIADHVTLSIGCASTIPRLGSDWGKLVGAADQYLYEAKAQGRN 309
              ++    P        ++T S+G  ST P  G     L+  A+  L  AK QG+N
Sbjct: 539 ---LSTFQEPFFLQGQPIYLTASMG-ISTAPYDGETAESLLKFAEIALTRAKCQGKN 591


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 77.8 bits (190), Expect = 4e-17
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 16  VVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFACCQ 75
           +VDD+  +R  L   L   G+ V  A +GEEA+  F E  P++V+LD +MP +DG+  CQ
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 76  ALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
            L K    P   ++M+T L D A      E GA DYV KP     L  R++ +L
Sbjct: 61  ELRKESDIP---IIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 75.1 bits (183), Expect = 3e-16
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73
           ILVVDD       +   L+ EG+     T+G EAL +  + +P+++LLD +MP MDG   
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL---- 129
           C  L +  Q     V+ +T  +++  + +AF  GA+DYVTKP     L  RVK  L    
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELKQ 139

Query: 130 YQNRLQHQLESVNQMLERLA 149
            ++ L H L    +  E LA
Sbjct: 140 TRDNLHHTLLEQARTAEALA 159



 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Query: 6   PIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVM 65
           P  ++   IL+ +D+   +   ++ L+K G+ V++  NG+EAL+  A+   +VVL+D  M
Sbjct: 734 PYSSSNLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEM 793

Query: 66  PVMDGFACCQALMKIY-QNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQ- 123
           P MDG    + + +   ++  P ++ +T    E   +R   +G  DYV+KPI    L+Q 
Sbjct: 794 PEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQA 853

Query: 124 -RVKRLLYQNRLQHQLESVN 142
            +V     Q+  Q ++ +V+
Sbjct: 854 LQVAATALQSTSQDRMATVS 873


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 37/117 (31%), Positives = 67/117 (57%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           +IL++DDD  +   + + L+  G+ V+ A +G +      +++P++++LD ++P +DGF 
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
            CQ L +  +     VLM+T L       + F++GA DY+TKP     +  RV+ LL
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 65.5 bits (158), Expect = 2e-13
 Identities = 39/128 (30%), Positives = 63/128 (49%)

Query: 10  AAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMD 69
           A   IL+V+DD  +   +R  L++E     +  +GE  L  F E  P++++LD ++P +D
Sbjct: 10  AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69

Query: 70  GFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
           G   C  + +   +  P +LM+T   +E         GA DY+ KP     L  RV+ LL
Sbjct: 70  GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129

Query: 130 YQNRLQHQ 137
            +   Q Q
Sbjct: 130 RRQLRQGQ 137


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71
           AK+L+V+D+   R  L   L ++G+ V +A +GE+A+T      P+++L+D  +P++DG+
Sbjct: 5   AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64

Query: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
              + +          ++ +T     +  +RA  AG  DY TKPI    L Q+++ L+
Sbjct: 65  TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 62.4 bits (150), Expect = 2e-12
 Identities = 36/110 (32%), Positives = 56/110 (50%)

Query: 6   PIETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVM 65
           P++    K+LVVDD    R+ LR  L   G  V+ A NGE A+  +    P+V+L+D  M
Sbjct: 412 PLDQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQM 471

Query: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKP 115
           PV+DG +  Q +    Q    +++ +T    E        AG  D+++KP
Sbjct: 472 PVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKP 521


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 61.6 bits (148), Expect = 3e-12
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71
           +K+L+VDDD  +   L   L+ EG  VE A NG EAL K  E   ++VLLD +MP ++G 
Sbjct: 2   SKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNE-SYKLVLLDVMMPKLNGI 60

Query: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
              + + K+   P   V+M+T   ++       E GA D + KP +   L  R+K +L
Sbjct: 61  ETLKEIRKVSNVP---VMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 61.2 bits (147), Expect = 4e-12
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 15/221 (6%)

Query: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71
           A IL+V+D+   R      L  +G RV++A NG+EALT       + +L+D  MP+++G+
Sbjct: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777

Query: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ 131
              +A+ +   + +  ++ +T        ++A +AG  D++TKPI   +L Q +   +  
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPP 837

Query: 132 NRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYPFSILLCDIDYF 191
           N  + + ++ +  L+       +T +  +  ++   + E    +  ++         D +
Sbjct: 838 NSAREK-KNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFG--------DRY 888

Query: 192 KNYNDHY-GHQGGDDCLQQVAKALTRVVHRPKDLAARYGGE 231
            N+ D +   Q  DD       A TR  H  K  AA  G E
Sbjct: 889 SNFADQFRTEQASDD-----PTAATRYAHSIKGAAALLGIE 924


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 60.1 bits (144), Expect = 9e-12
 Identities = 35/116 (30%), Positives = 58/116 (50%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73
           +L+V+D    R  +   L+  G +V +A +G EAL K     P++V+LD VMP M+G+  
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
           C+ +    +  +  V+M +   +E         GA  Y+ KP     L   +K+LL
Sbjct: 90  CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73
           +L+VDDD  + + ++ YL+ +G++V  A NG EAL       P++++ D +MP MDG+A 
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 74  CQALMKIYQNPSPL---VLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130
            +   ++ QNP      V+ ++      +  +    GA  Y+ KP     L  +V+  L 
Sbjct: 70  IE---QVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR 126

Query: 131 Q--NRLQHQLESVNQMLERLAKV 151
           Q    LQH     N  LE  A+V
Sbjct: 127 QADRLLQHN----NHPLEDNARV 145


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 43/180 (23%), Positives = 91/180 (50%), Gaps = 23/180 (12%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           ++LVV+++  +   + + L+ EG+ V +A +G +  T+  E  P++++++  +P M G  
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIH----WAVLRQRVKRL 128
            C+ L ++       +++IT  DD        +AGA DY+ KP +    +A +R +++R 
Sbjct: 64  LCRRLREMGSRIP--IILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121

Query: 129 ------------LYQNRLQHQLESVNQMLERLAKVDQLTQ--LANRRQL---ELFLDTEW 171
                       L  NR   +++  +++++  AK  +L    L++ RQ+   E  L+  W
Sbjct: 122 HTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVW 181


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 57.0 bits (136), Expect = 8e-11
 Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 4/126 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           KIL+V+D+  +R  + ++L ++ + V  A++ + A+ K  E  P+++LLD ++P   G  
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKE-NPKLILLDWMLPGRSGIQ 62

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVK---RLL 129
             Q + K     +  ++M+T    E        AGA DY+TKP    +L  R++   R +
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 130 YQNRLQ 135
           Y+ + Q
Sbjct: 123 YEQQSQ 128


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           KILVVDD    R  L   L   G  +E A+NG+EA+  +   +P ++ +D  MPVMDG+ 
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 73  CCQALMKIYQNPSPLVLMITG--LDDEASVDRAFEAGAIDYVTKP 115
             + +    +  +  V+ +T   L++E ++     AG  D++ KP
Sbjct: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAI--VLSAGCDDFLRKP 733


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           +IL+V+DD  +   L   L  + + V++AT+   A    + ++ ++V+LD ++P +DG  
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 73  CCQALMK-IYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
            CQ      Y  P   +LM+T  D         +AGA DYV KP+    L  RV+ LL
Sbjct: 62  LCQKWRSHSYLMP---ILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEAL--TKFAEIKPEVVLLDAVMPVMDGF 71
           ILVV+D+  +R  +   L  E +++  A NG  AL      E+ P++++ D +MP MDG 
Sbjct: 4   ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ 131
               AL K  +  +   + +T L       +   +GA DY+ KP                
Sbjct: 64  GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPF--------------- 108

Query: 132 NRLQHQLESVNQMLERLAKVDQLTQ 156
            + +  L +VN  L++ AK+    Q
Sbjct: 109 -KQEDLLNAVNSRLQKQAKLSAFYQ 132


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPE-----VVLLDAVMPV 67
           ++LVVDD+   R+ ++  L++    VE   +G EAL   AE   E     +V +D  MP 
Sbjct: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 68  MDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKR 127
           MDG    + L  +  N  P + ++T    E    +A   G  D + KPI  +VL   + R
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891

Query: 128 LL 129
           +L
Sbjct: 892 VL 893



 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 12   AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71
            A+IL+V+D+   +      L+  G  V++A NG  AL +       +VL+D  MP MDG 
Sbjct: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984

Query: 72   ACCQALMKIYQNPS----PLVLMITGLDDEASVDRAFEAGAIDYVTKPI 116
               +A + I QNP     P+V M   +  +   +R  +AG  D++ KPI
Sbjct: 985  ---EATIAIRQNPRYAQLPIVAMTANV-MQGDRERCLQAGMNDHLGKPI 1029


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71
           A IL+VDD+  +   L   L  +GH +++A  G+  L      + ++++LD ++P + G 
Sbjct: 2   ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ 131
             C+ + +I  + +P VL +T  D         +AG  DY+ KP     L  RV+ LL  
Sbjct: 62  EICRQI-RILGHSTP-VLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALL-- 117

Query: 132 NRLQHQLESVNQML 145
            R Q   E++ + L
Sbjct: 118 -RRQSHGETITETL 130


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 9/129 (6%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKP-------EVVLLDAVM 65
           +ILVV+D+  +R  + + LQ+EG+ V    +G +AL    E          ++++LD ++
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRV 125
           P ++G   C++L   +   +  +L+++    E       E GA DY+TKP     L  R 
Sbjct: 92  PQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 126 KRLLYQNRL 134
           + ++ +  L
Sbjct: 150 RAMIRRQGL 158


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 8   ETAAAKILVVDDDGFMRMQLRVYLQKEGHR--VELATNGEEALTKFAEIKPEVVLLDAVM 65
           +    ++L+ DD    R  L   + ++     +  A NGE+A+  F E +P+V L+D  M
Sbjct: 3   QATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRM 62

Query: 66  PVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTK 114
           P ++G A   A+  I +     ++++T  D +  + R  +AGA  Y+ K
Sbjct: 63  PEVEGVAAISAICAIVK--FARIIVLTTYDSDEDIYRGLQAGAKGYLLK 109


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 4/125 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           KILVV+D+   R  L+   + EG+ V  A NG E     A     +V++D  +P  +G  
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQN 132
             + L +    P   ++ +TG D+E       E GA DY+TKP +   L  R + LL++ 
Sbjct: 65  LARELREELSLP---LIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR- 120

Query: 133 RLQHQ 137
            + HQ
Sbjct: 121 AMPHQ 125


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 54.3 bits (129), Expect = 5e-10
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRV-ELATNGEEALTKFAEIKPEVVLLD-AVMPVMDG 70
           KIL+V+D+  +   +   L+ +G+ +  +A++G  AL K AE  P++VLLD  +   +DG
Sbjct: 4   KILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDG 63

Query: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130
               + +  +Y  P   ++ +T   D  +++RA +     YV KP     L   V   + 
Sbjct: 64  IEVAERIKSLYSIP---IVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIA 120

Query: 131 QNRLQHQLE 139
            ++ Q + E
Sbjct: 121 NHQQQRKPE 129


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVL--LDAVMPVMDG 70
           +IL+V+D+  + M ++  L  E + V+  T+G +A         E  L  +D ++P + G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRL 128
              CQ L    Q  S  VLM+T L +  +     +AGA DY+TKP   A L  R++ L
Sbjct: 62  LELCQKLRT--QGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRAL 117


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           +IL+++DD  +   L++ L K G  V+  T+G+  +        + V+LD  +P +DG  
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129
             Q     +Q+    VL++T  D      +  ++GA DY+ KP   A +  R++ L+
Sbjct: 62  VLQQWRSNHQDVP--VLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALI 116


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFAC 73
           I VV+ +  +R  L  +LQ+ G+ V+  +   +A   F    P + ++D+ +   DG   
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 74  CQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQNR 133
           C+ L   YQ    ++ +++  D E  +    +AGA DY+TKP        R++ L+ + R
Sbjct: 66  CRWL---YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVR 122


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAE--IKPEVVLLDAVMPVMDG 70
           ++L+V+D+  + M L   L++E + V+   +G  A +   +  +   + + D ++P + G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130
              CQ L    Q  S  +LM+T  D  A      +AGA DY+ KP   A L  R++ L  
Sbjct: 62  LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQR 119

Query: 131 QN-RLQHQLESVNQ 143
           ++  LQ Q   V Q
Sbjct: 120 RSPELQPQQLQVGQ 133


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 14  ILVVDDDGFMRMQLRVYLQKEGH-RVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72
           +L+VDD+  +R  ++ +L+  G  +V+LA N  EA        P +V+ D +MP +DG+ 
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQN 132
             Q L +  +  S  V+ +T         + ++ G   +++KP     L   V+ LL + 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177

Query: 133 RLQHQLESVNQMLERL 148
           +      S +  L+ +
Sbjct: 178 QASSDAGSESAKLQEI 193


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 11   AAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70
            A +IL+ +D+   +      L   G+ V +A NG+E +    +   ++VL+D  MPVMDG
Sbjct: 1189 ALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDG 1248

Query: 71   FACCQALMK-IYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQ 123
               C+ + + +     P ++ +T            +AG   Y++KPI    LR+
Sbjct: 1249 ITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRK 1302



 Score = 40.4 bits (93), Expect = 7e-06
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 13   KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKP-EVVLLDAVMPVMDGF 71
            ++L+VDD+   R  L+   Q  G      T+GE AL  FA     +  +LD  MP MDG 
Sbjct: 1035 QVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFARCPDLDAAILDLQMPNMDGI 1094

Query: 72   ACCQALMKIYQNPS-PLVLMITGL---DDEASV 100
                 L +  Q    P++L+ +GL    DE SV
Sbjct: 1095 TLAHHLRQFAQGKDLPIILLSSGLVAGADELSV 1127


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 47.8 bits (112), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEG--HRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDG 70
           +I +++D+  +R  L+  L  E     V  A NG   L    + +P+VV++D  +P M+G
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVK 126
               Q L K   N    V+++T  D E +V  AF AGA  Y  K     +L + ++
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 47.4 bits (111), Expect = 6e-08
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 7   IETAAAKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPE---VVLLDA 63
           I   + +IL+V+DD   R+ L   L +E   +++A   E+  T  A +  +   VV+LD 
Sbjct: 3   ISPTSIRILLVEDDELFRLGLVTRLSQEPG-LDVAGEAEDGETAIAYVNQQLFDVVILDV 61

Query: 64  VMPVMDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPI 116
            +P + G   C  + KI+  P   VL++T     A ++R  EA A  Y  K +
Sbjct: 62  GLPGIGGIEACHQIKKIH--PQLPVLILTSHSQPALINRLIEAQAQGYCVKGV 112


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 43.9 bits (102), Expect = 7e-07
 Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELA--TNGEEALTKFAEIKPEVVLLDAVMPVMDG 70
           K+L++DD   MR  ++  ++ + +   +A  ++G E ++   +  P+V++LD  M  + G
Sbjct: 6   KVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSG 65

Query: 71  FACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLY 130
               + L    +     +L++T  D +  +    +AGA  Y+ K      L +++KR+  
Sbjct: 66  LDTLKGLRA--EGVDARILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQIKRIA- 122

Query: 131 QNRLQHQLESVNQMLERLAKVDQLTQLANR 160
           Q  +       N +LER  + + L  L +R
Sbjct: 123 QGEVILSDSIKNLLLERTHEDNPLDSLTDR 152


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.322    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,246
Number of Sequences: 78
Number of extensions: 1170
Number of successful extensions: 65
Number of sequences better than 1.0e-05: 33
Number of HSP's better than  0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 38
length of query: 315
length of database: 48,235
effective HSP length: 63
effective length of query: 252
effective length of database: 43,321
effective search space: 10916892
effective search space used: 10916892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002635 slr1783 
         (282 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002635 slr1783                                            556   e-161
SYNE-PCC-01-002731 slr1909                                            147   4e-38
SYNE-PCC-01-001461 slr0115                                             93   8e-22
SYNE-PCC-01-002086 slr1042                                             91   5e-21
SYNE-PCC-01-002033 slr0947                                             87   5e-20
SYNE-PCC-01-002873 slr2098                                             77   5e-17
SYNE-PCC-01-002486 slr1584                                             77   5e-17
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    74   4e-16
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   74   4e-16
SYNE-PCC-01-002489 slr1588                                             74   7e-16
SYNE-PCC-01-000414 sll0649                                             72   2e-15
SYNE-PCC-01-001575 slr0312                                             72   3e-15
SYNE-PCC-01-000523 sll0797                                             71   4e-15
SYNE-PCC-01-000518 sll0789                                             70   6e-15
SYNE-PCC-01-001306 sll1905                                             70   1e-14
SYNE-PCC-01-001133 sll1673                                             70   1e-14
SYNE-PCC-01-000800 sll1228                                             70   1e-14
SYNE-PCC-01-002879 slr2104                                             68   4e-14
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    67   5e-14
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    65   3e-13
SYNE-PCC-01-002617 slr1759                                             64   4e-13
SYNE-PCC-01-002672 slr1837                                             63   9e-13
SYNE-PCC-01-001437 slr0081                                             63   9e-13
SYNE-PCC-01-002951 ssl0564                                             60   1e-11
SYNE-PCC-01-000242 sll0396                                             60   1e-11
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    60   1e-11
SYNE-PCC-01-001132 sll1672                                             55   2e-10
SYNE-PCC-01-002788 slr1982                                             52   2e-09
SYNE-PCC-01-002618 slr1760                                             49   2e-08
SYNE-PCC-01-000877 sll1330                                             46   2e-07
SYNE-PCC-01-001075 sll1592                                             42   2e-06
SYNE-PCC-01-001039 sll1544                                             41   5e-06

>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score =  556 bits (1433), Expect = e-161
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MGLSLLRPRLVFLEFIPRDRLMGGGISQSGNLLRSPPTKPPYLPLHDCITAMAEPISLLL 60
           MGLSLLRPRLVFLEFIPRDRLMGGGISQSGNLLRSPPTKPPYLPLHDCITAMAEPISLLL
Sbjct: 1   MGLSLLRPRLVFLEFIPRDRLMGGGISQSGNLLRSPPTKPPYLPLHDCITAMAEPISLLL 60

Query: 61  VDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFLQ 120
           VDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFLQ
Sbjct: 61  VDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFLQ 120

Query: 121 KLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQAS 180
           KLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQAS
Sbjct: 121 KLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQAS 180

Query: 181 SDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKE 240
           SDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKE
Sbjct: 181 SDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKE 240

Query: 241 IAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGLTE 282
           IAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGLTE
Sbjct: 241 IAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGLTE 282


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score =  147 bits (371), Expect = 4e-38
 Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 20/227 (8%)

Query: 54  EPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQV 113
           E   LLLVDD+P +   V+ +LE  G ++V  A N  EA D L   +P +++ DIMMP++
Sbjct: 6   ENYHLLLVDDDPNLLLLVKDYLEYQG-YQVTTAGNGREALDLLTTTVPDMIVCDIMMPEM 64

Query: 114 DGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNL 173
           DGY F++++R++     +PV+FL+A+G + +R++G   G D +++KPF+P+EL A V++ 
Sbjct: 65  DGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSC 124

Query: 174 LARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVS 233
           L  +QA       +  L++        + Q+ +            ++ TP E  V+ LV+
Sbjct: 125 L--RQADRLLQHNNHPLED------NARVQVAR-----------DVELTPTETKVIQLVA 165

Query: 234 QGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280
           QGL N+EIA  LK S R VE +VS +  KTG ++RTEL R+A+Q  +
Sbjct: 166 QGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 93.2 bits (230), Expect = 8e-22
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L++DD+P + + V   LE +G + V  A +  +         P L++ D+M+P+VDG+ 
Sbjct: 4   ILIIDDDPAISDLVSINLEMAG-YDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177
             Q+LR D R   +PV+ LTA G   D+IQG+ +G D +L+KPFD +E+ A VR LL R 
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 178 QASSDAGSESAKLQE 192
                A   S  L +
Sbjct: 123 DRIPQAAKHSEILNQ 137


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 90.5 bits (223), Expect = 5e-21
 Identities = 42/118 (35%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116
           ++LLV+D    RE +   L+D G ++V +A +  EA + LQ+  P LV+ DI+MP+++GY
Sbjct: 29  AVLLVEDSSSQREMISGILKDHG-WQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGY 87

Query: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174
           +  ++++ D + +++PV+  +++G   DR  G + G DA+++KPF P EL   ++ LL
Sbjct: 88  EVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 87.4 bits (215), Expect = 5e-20
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 4/134 (2%)

Query: 60  LVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFL 119
           +VDDE  +R  ++  L   G ++V  AA+  EA        P LV+ D+MMP++DGY   
Sbjct: 1   MVDDEASIRRILETRLSMIG-YEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVC 59

Query: 120 QKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQA 179
           Q+LR+++    +P++ LTA G   DRI G + G D ++ KPF P ELEA +R++L R   
Sbjct: 60  QELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 116

Query: 180 SSDAGSESAKLQEI 193
           +   G  S+ + +I
Sbjct: 117 NGMPGIPSSGVLQI 130


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 77.4 bits (189), Expect = 5e-17
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 58   LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
            +LLV+D    +E     L D G F VD+AAN   A + L ++  ALV+ D+ MP++DG +
Sbjct: 927  ILLVEDNEINQEVAAELLRDVG-FNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985

Query: 118  FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDEL 166
                +R++ R+  LP+V +TA  M GDR +  Q G +  L KP +P+EL
Sbjct: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034



 Score = 44.3 bits (103), Expect = 4e-07
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 27/197 (13%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYL-----QHHLPALVISDIMMPQ 112
           +L+VDD    R  ++  LE    F V+   +  EA ++L     ++H  ++V  D  MP 
Sbjct: 773 VLVVDDNDHARLVMKDLLEQM-KFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831

Query: 113 VDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRN 172
           +DG +  ++L+         +  +TA G     ++    G D  L KP  P    +++ +
Sbjct: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISP----SVLFD 887

Query: 173 LLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLV 232
            LAR                +  +  AL +++ Q SGI      ++     R   +L LV
Sbjct: 888 SLAR----------------VLGDPTALAQEMRQSSGIGAEDLALEKLRRIRGARIL-LV 930

Query: 233 SQGLMNKEIAAQLKTSV 249
               +N+E+AA+L   V
Sbjct: 931 EDNEINQEVAAELLRDV 947


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 77.4 bits (189), Expect = 5e-17
 Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 3/119 (2%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +LLV+D+  + E++   L D   + VD+A +A+ AWDY       LVI D+M+P++DG  
Sbjct: 3   ILLVEDDLPLAETLAEALSDQL-YTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176
             QK R  +    +P++ +TAR    D+I G   G D ++ KP D  EL A VR LL R
Sbjct: 62  LCQKWRSHSYL--MPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRR 118


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 74.3 bits (181), Expect = 4e-16
 Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L+V+DE   R +++   E  G + V  A N  E    L +H   LV+ DI +P  +G  
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEG-YDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176
             ++LRE+    SLP++FLT R    D+I G + G D +L+KPF+P EL    RNLL R
Sbjct: 65  LARELREEL---SLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 74.3 bits (181), Expect = 4e-16
 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 5/125 (4%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           LLLVDD+  + E +   LE  G F V+ A N  EA   L      LV+ D+MMP+++G +
Sbjct: 4   LLLVDDDIELTELLSTLLELEG-FDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIE 61

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177
            L+++R   +  ++PV+ LTARG   DR+ G + G D  L KPF+  EL A ++ +L R 
Sbjct: 62  TLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118

Query: 178 QASSD 182
            + S+
Sbjct: 119 ASPSN 123


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 73.6 bits (179), Expect = 7e-16
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 21/200 (10%)

Query: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQ--HHLPALVISDIMMPQVD 114
           ++L+V+DE  +RE +   L    ++K+  A N   A   L     +P L+I D+MMP++D
Sbjct: 3   TILVVEDEAIIRELIGETLSLE-NYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61

Query: 115 GYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174
           G+  +  L+++A+  ++P +FLTA G   D  +G  +G D +L KPF  ++L   V + L
Sbjct: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRL 121

Query: 175 ARQQASSDAGSESAKLQEIYQ-EIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVS 233
            +Q          AKL   YQ  I +   +  + SG   TP+      TP E  +   + 
Sbjct: 122 QKQ----------AKLSAFYQGSISSSLTERPRRSGTIGTPT-----LTPDEAEIWRDLE 166

Query: 234 QGLMNKEIAA--QLKTSVRN 251
            GL   ++    Q K S+ N
Sbjct: 167 VGLNTGQVFLFYQPKVSIHN 186


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 72.4 bits (176), Expect = 2e-15
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116
           ++L+V+D+  + + ++  LE    F   +  +        Q  +P L++ D+M+P++DG 
Sbjct: 13  NILIVEDDQEIAQLIRETLERE-QFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71

Query: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176
           +   ++R+    +   ++ LTA+G   DRI G  TG D +L KPF P EL A VR LL R
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 177 Q 177
           Q
Sbjct: 132 Q 132


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 71.6 bits (174), Expect = 3e-15
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 29/232 (12%)

Query: 51  AMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAA-NATEAWDYLQHHLPALVISDIM 109
           + A  I +L+ DD    R+ +   +    D +V   A N  +A    + H P + + D+ 
Sbjct: 2   SQATTIRVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLR 61

Query: 110 MPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAI 169
           MP+V+G   +  +    +F    ++ LT      D  +G Q G   +L K  +PDEL   
Sbjct: 62  MPEVEGVAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNA 119

Query: 170 VRNLLARQQ-ASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSV 228
           +R +   Q+    D G++             L +++  P            + + RE  V
Sbjct: 120 IRTVHRGQKYIPPDVGAK-------------LVQRLSNP------------ELSERELEV 154

Query: 229 LDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280
           L  ++QG+ N +IA  L      V+ +V+R+  K     RT+ V  A++ G+
Sbjct: 155 LGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 70.9 bits (172), Expect = 4e-15
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLP--ALVISDIMMPQVDG 115
           +LLV+DE  +  +++  L  S  + VD   + ++AWDYL++      L I D ++P + G
Sbjct: 3   ILLVEDETDLGMAIKKVLV-SEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175
            +  QKLR      SLPV+ LTA G   +R++G   G D +L+KPF   EL A +R L  
Sbjct: 62  LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQR 119

Query: 176 R 176
           R
Sbjct: 120 R 120


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 70.5 bits (171), Expect = 6e-15
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 37/220 (16%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLP--ALVISDIMMPQVDG 115
           LLLV+DEP +  +++  L    ++ VD   +   AW YL        L I D M+P + G
Sbjct: 3   LLLVEDEPDLGMALEKALRRE-NYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175
            +  QKLR   +  SLP++ LTA+    DR++G   G D +L KPF   EL A +R+L  
Sbjct: 62  LELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQR 119

Query: 176 RQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLD----- 230
           R          S +LQ   Q+++  +  +   +    TP   ++  T +E  +L+     
Sbjct: 120 R----------SPELQP--QQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKH 167

Query: 231 ----LVSQGLMNK-----------EIAAQLKTSVRNVEKY 255
               L S+ + N+            +AAQ++   R +E+Y
Sbjct: 168 PQQILSSEQIKNQLWALSAESTSNVVAAQVRLLRRKLEEY 207


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 69.7 bits (169), Expect = 1e-14
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 41  PYLPLHDCITAMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHL 100
           P  P     T   E   +L+VDD       +   LE  G +      +  EA   +    
Sbjct: 3   PSQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEG-YSTTFVTSGPEALQRVTQAQ 61

Query: 101 PALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKP 160
           P L++ D+MMP +DG +   +L++D + + +PV+FLTA     D +Q +  G   +++KP
Sbjct: 62  PDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKP 121

Query: 161 FDPDELEAIVRNLLARQQ 178
           F P EL A V+  L  +Q
Sbjct: 122 FSPPELLARVKTHLELKQ 139



 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 38  TKPPYLPLHDCITAMAEPIS-----LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEA 92
           T+PP L   + I+    P S     +LL +D    ++  +  L+  G + VD+  N  EA
Sbjct: 717 TEPPTLVSTEAISGPLFPYSSSNLTILLAEDNLINQQVAKLLLKKLG-YPVDVVNNGQEA 775

Query: 93  WDYLQHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLP-VVFLTARGMTGDRIQGYQT 151
              L      +V+ D+ MP++DG    + +R        P ++ +TA  M GDR +   +
Sbjct: 776 LSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLAS 835

Query: 152 GCDAFLSKPFDPDELEAIVRNLLARQQASS 181
           G + ++SKP   + L+  ++      Q++S
Sbjct: 836 GMNDYVSKPIRLEALQQALQVAATALQSTS 865


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-14
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116
           ++LLVDD P   + +   L + G + V    +   A   LQ   P L++ DI MP +DGY
Sbjct: 10  NILLVDDLPNNLQLLSDLLINLG-YTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGY 68

Query: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176
           Q  + ++++   Q +P++F++A G T D+++ ++ G   +++KPF  +E+ A +      
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTI 128

Query: 177 QQASSDAGSESAK---LQEIYQEIRALKEQI 204
           Q+       E  K    +E+  + RAL   +
Sbjct: 129 QRQRIALKREVRKRREAEEVLYQSRALLSSV 159


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 69.7 bits (169), Expect = 1e-14
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L+VDD P  R  ++  L   G F V  A N   A    +   P +++ D+ MP +DG  
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLG-FVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175
             QK++   + Q   ++ LTA    G+R +    GCD FLSKPF P+EL A++   LA
Sbjct: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLA 536


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 67.8 bits (164), Expect = 4e-14
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 54  EPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQV 113
           E  S+LLV+D    RE     L   G  +V +A N  EA   L  +    ++ DI MP +
Sbjct: 716 EGASILLVEDNEINREFAHDLLTSKG-LRVQVANNGQEALTLLTSNTYDAILMDIQMPML 774

Query: 114 DGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNL 173
           +GY   + +R+    ++LP++ +TA  M GD+ +    G +  L+KP  PD L   + + 
Sbjct: 775 NGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHW 834

Query: 174 LARQQASSDAG-SESAKLQEIYQEIRALKEQIG 205
           +    A      S + K    +  +  + +QIG
Sbjct: 835 IPPNSAREKKNPSSNLKADLSFSSMTGINQQIG 867


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 67.4 bits (163), Expect = 5e-14
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 18/223 (8%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L+V+DE  +RE +  FL     + V  A++   A + ++ + P L++ D M+P   G Q
Sbjct: 5   ILIVEDECAIREMIALFLSQKY-YDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR- 176
           F+Q +++   + ++P++ LTA+    D I     G D +++KPF P  L A +  +  R 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 177 -QQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQG 235
            +Q S     +   + E  Q +   +++I     + +T   +   F    + V     + 
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEI----NLSSTEFKLLHFFMRHPEKVYS--REQ 176

Query: 236 LMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQH 278
           L+N+     L+   R V+ Y+ RL        R  L  F  +H
Sbjct: 177 LLNRIWHNDLEVEYRTVDSYIRRL--------RRNLAPFQCEH 211


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 64.7 bits (156), Expect = 3e-13
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 29/221 (13%)

Query: 52  MAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDL-AANATEAWDYLQHHLPALVISDIMM 110
           M + + +LL+DD P +R  ++  +E   +F+V    ++ TE         P ++I D+ M
Sbjct: 1   MQDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNM 60

Query: 111 PQVDGYQFLQKLRE---DARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELE 167
             + G   L+ LR    DAR     ++ LT      D       G D +L K  +PD L 
Sbjct: 61  KGLSGLDTLKGLRAEGVDAR-----ILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLL 115

Query: 168 AIVRNLLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQS 227
             ++ +   +   SD+  ++  L+  +++                  +P+    T RE  
Sbjct: 116 EQIKRIAQGEVILSDS-IKNLLLERTHED------------------NPLD-SLTDREMG 155

Query: 228 VLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSR 268
           VL  ++ GL NK+IAAQL  S   V+ ++  L  K   +SR
Sbjct: 156 VLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSR 196


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 64.3 bits (155), Expect = 4e-13
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 43   LPLHDCITAMAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPA 102
            LP  D  T++   + +LL +D    ++     L + G + V +A N  E  D L+     
Sbjct: 1177 LPTEDNATSLQPALQILLAEDNLVNQKVAHQMLNNLG-YPVAIANNGQEVIDALEKKFYD 1235

Query: 103  LVISDIMMPQVDGYQFLQKLREDARFQSLP-VVFLTARGMTGDRIQGYQTGCDAFLSKPF 161
            LV+ D+ MP +DG    + +R+    +  P +V +TA  M GDR +    G D ++SKP 
Sbjct: 1236 LVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPI 1295

Query: 162  DPDELEAIVRN---LLARQQASSDAGSESAKLQEIYQEIRALKEQ-IGQPSGIHTTP-SP 216
              ++L  ++++   L+   QA  D       +  +  +I  ++EQ + +P+ +  +P  P
Sbjct: 1296 SINQLRKVLQDTSALITSPQARED-------IVTLGDKITVVEEQTMVKPTDVTESPLDP 1348

Query: 217  IKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRL 259
              + F   +    DL    L  + +A   + S + +E+ V  L
Sbjct: 1349 TAIAFLRDDLCGGDLT---LFGEMVACYCQESQKLIEELVQGL 1388


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 63.2 bits (152), Expect = 9e-13
 Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116
           ++LLVDDE  + E +   L   G   +D+A                L+I D M+PQV G 
Sbjct: 3   NILLVDDENALTEPLSKALGHQGH-TIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176
           +  +++R      S PV+FLTA+    DR+ G   G D +L KPF+  EL A VR LL R
Sbjct: 62  EICRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRR 119

Query: 177 Q 177
           Q
Sbjct: 120 Q 120


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 63.2 bits (152), Expect = 9e-13
 Identities = 43/153 (28%), Positives = 80/153 (52%), Gaps = 13/153 (8%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPA-------LVISDIMM 110
           +L+V+DE  +RE++   L++ G ++V    +  +A   LQ            L+I DIM+
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEG-YEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 111 PQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIV 170
           PQV+G    + LR      + P++ ++A+G   +++ G + G D +++KPF   EL A  
Sbjct: 92  PQVNGLDVCRSLRFGG--DNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 171 RNLLARQQASSDAGSESAKLQEIY---QEIRAL 200
           R ++ RQ  + +  +   K +++    QE R L
Sbjct: 150 RAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVL 182


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 224 REQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHG 279
           RE  +LDLV+ GL N+E++ +L+ S R V+ +VS + TKT T +R ELVR+ALQ G
Sbjct: 15  RELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L+V++E  +   ++  L+  G + V +A +  + +   Q   P L+I +  +P + G +
Sbjct: 5   VLVVEEEEKLARFMELELKYEG-YDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177
             ++LRE      +P++ +TA+    +R+ G   G D ++ KPF+ DE  A +R  L R 
Sbjct: 64  LCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRT 121

Query: 178 QASSDAGSESAKLQ 191
             +SD   + A L+
Sbjct: 122 HTTSDEVLQFADLR 135


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +LL++D+  +   +Q  L   G F VD   +       L       V+ D+ +P++DG +
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLG-FAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177
            LQ+ R +   Q +PV+ LTAR    +R++G Q+G D +L KPF   E+ A ++ L+ R+
Sbjct: 62  VLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 55.5 bits (132), Expect = 2e-10
 Identities = 32/108 (29%), Positives = 54/108 (50%)

Query: 54  EPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQV 113
           +P+  +LV D+  V   +   L     F+++ A+N  EA    +   P L+  D+ MP +
Sbjct: 627 QPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVM 686

Query: 114 DGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPF 161
           DGY+  + ++   +  +  VV LTA  +  ++      GCD FL KPF
Sbjct: 687 DGYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 52.0 bits (123), Expect = 2e-09
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 52  MAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMP 111
           M     +LLV+D    R+ +   L   G ++V +A +  +A        P L++ D+ +P
Sbjct: 1   MESMAKVLLVEDNEMNRDMLSRRLIRKG-YEVVIAVDGEQAVTMAISESPQLILMDMSLP 59

Query: 112 QVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVR 171
            +DG+   ++++       +P++ LTA  M  DR +    GCD + +KP +       ++
Sbjct: 60  IIDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIE-------IK 112

Query: 172 NLLARQQA 179
            LL + +A
Sbjct: 113 RLLQKMEA 120


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117
           +L+VDD+  +R  ++ +L+  G  +V+LA N  EA        P +V+ D +MP +DG+ 
Sbjct: 14  ILVVDDDGFMRMQLRVYLQKEGH-RVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFA 72

Query: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177
             Q L +  +  S  V+ +T         + ++ G   +++KP     L   V+ LL + 
Sbjct: 73  CCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQN 132

Query: 178 QASSDAGSESAKLQEI 193
           +      S +  L+ +
Sbjct: 133 RLQHQLESVNQMLERL 148


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 55  PISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVD 114
           P+ + +V+  P +R  +   L+ SG + V   +   +A     + LP L + D  +   D
Sbjct: 3   PVYISVVEGNPHLRSLLSWHLQQSG-YLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGD 61

Query: 115 GYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLL 174
           G +  + L +  + QS+ +  L+A+    D + G + G D +L+KPF   E  A +  L+
Sbjct: 62  GIELCRWLYQ--QHQSM-IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLI 118

Query: 175 AR 176
            R
Sbjct: 119 RR 120


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 42.0 bits (97), Expect = 2e-06
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 56  ISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATE---AWDYLQHHLPALVISDIMMPQ 112
           I +LLV+D+   R  +   L  S +  +D+A  A +   A  Y+   L  +VI D+ +P 
Sbjct: 8   IRILLVEDDELFRLGLVTRL--SQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPG 65

Query: 113 VDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRN 172
           + G +   ++++      LPV+ LT+        +  +     +  K    + L   +R+
Sbjct: 66  IGGIEACHQIKKI--HPQLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLVLAIRS 123

Query: 173 LLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLV 232
           + A         S+  ++Q  +Q   +    +         P       T RE  +L LV
Sbjct: 124 VAAGAFWWDAIASQ--EIQTAFQHSSSTGAVLPLADADGENP------LTKRELEILSLV 175

Query: 233 SQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280
           ++G  N+EIA +L  +   V  +V  +  K     RT+    A++  L
Sbjct: 176 AKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIERRL 223


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 40.8 bits (94), Expect = 5e-06
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 27/200 (13%)

Query: 82  KVDLAANATEAWDYL-QHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPVVFLTARG 140
           KV +    +EA  Y  Q   P +V+    +    G   L++L+  AR     ++ L    
Sbjct: 51  KVKIFTLQSEALTYFEQQPEPLVVVICQRLEDGSGLDLLKQLKAHARSPQCLLLLLNDHA 110

Query: 141 MTGDRIQGYQTGCDA-FLSKPFDPDELEAIVRNLLARQQASSDAGSESAKLQEIYQEIRA 199
              +  Q Y  G DA FL       E+   V  LL  +          ++L+ I    ++
Sbjct: 111 AIVEEAQQY--GADAIFLESSLGNGEINLAVECLLQGRTYID------SRLEAIADYRKS 162

Query: 200 LKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRL 259
            K+++                 T RE ++L LV++G  N EI  +L  +   V +YV  +
Sbjct: 163 QKDEL-----------------TQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTI 205

Query: 260 FTKTGTNSRTELVRFALQHG 279
             K     RT      L+ G
Sbjct: 206 MRKLNARDRTSAAIAGLREG 225


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,533
Number of Sequences: 78
Number of extensions: 1125
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 32
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 38
length of query: 282
length of database: 48,235
effective HSP length: 62
effective length of query: 220
effective length of database: 43,399
effective search space:  9547780
effective search space used:  9547780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002672 slr1837 
         (234 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002672 slr1837                                            385   e-110
SYNE-PCC-01-000518 sll0789                                            124   2e-31
SYNE-PCC-01-000523 sll0797                                            112   1e-27
SYNE-PCC-01-000242 sll0396                                            110   5e-27
SYNE-PCC-01-001437 slr0081                                            107   3e-26
SYNE-PCC-01-002486 slr1584                                            107   3e-26
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...   104   2e-25
SYNE-PCC-01-001461 slr0115                                            104   3e-25
SYNE-PCC-01-000414 sll0649                                             98   3e-23
SYNE-PCC-01-002033 slr0947                                             86   1e-19
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   83   9e-19
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    82   2e-18
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    74   4e-16
SYNE-PCC-01-000877 sll1330                                             67   4e-14
SYNE-PCC-01-002731 slr1909                                             63   1e-12
SYNE-PCC-01-002489 slr1588                                             62   1e-12
SYNE-PCC-01-002788 slr1982                                             61   4e-12
SYNE-PCC-01-001133 sll1673                                             61   4e-12
SYNE-PCC-01-001306 sll1905                                             59   1e-11
SYNE-PCC-01-002879 slr2104                                             59   2e-11
SYNE-PCC-01-002086 slr1042                                             59   2e-11
SYNE-PCC-01-001132 sll1672                                             57   7e-11
SYNE-PCC-01-002635 slr1783                                             52   1e-09
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    52   1e-09
SYNE-PCC-01-002617 slr1759                                             50   5e-09
SYNE-PCC-01-002873 slr2098                                             50   6e-09
SYNE-PCC-01-002618 slr1760                                             49   2e-08
SYNE-PCC-01-001160 sll1708                                             47   7e-08
SYNE-PCC-01-000800 sll1228                                             46   1e-07
SYNE-PCC-01-001075 sll1592                                             45   2e-07
SYNE-PCC-01-000608 sll0921                                             45   2e-07
SYNE-PCC-01-001517 slr0222                                             45   2e-07

>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score =  385 bits (990), Expect = e-110
 Identities = 197/234 (84%), Positives = 197/234 (84%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 61  LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQ 120
           LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF               Q
Sbjct: 61  LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQ 120

Query: 121 SHGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQIL 180
           SHGETITETLGAVK           DVANQVAYCQGQRIALSEKEVALLTLFLQAPGQIL
Sbjct: 121 SHGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQIL 180

Query: 181 SHEEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGYCFEAN 234
           SHEEIYSHLWPGESPPSSN           KIEQPNAPRLINSVYGKGYCFEAN
Sbjct: 181 SHEEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGYCFEAN 234


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score =  124 bits (312), Expect = 2e-31
 Identities = 81/231 (35%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAG--QYDLLILDWMLPQVSGL 61
           +LLV+DE  L   L KAL  + + +D    G    +    G   Y L I DWM+P +SGL
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQS 121
           E+C+++R    S P+L LTAKD + DRV GLDAG DDYLIKPF                 
Sbjct: 63  ELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRSP 122

Query: 122 HGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181
             +     +G              + A         RI L+ KE  LL  F++ P QILS
Sbjct: 123 ELQPQQLQVGQWWLDYGTFAVVTPEQA---------RITLTAKEFQLLEYFMKHPQQILS 173

Query: 182 HEEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGYCFE 232
            E+I + LW   +  +SN           K+E+ +   LI +VYG GY F+
Sbjct: 174 SEQIKNQLWALSAESTSNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRFQ 224


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score =  112 bits (279), Expect = 1e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 4/230 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAG--QYDLLILDWMLPQVSGL 61
           ILLV+DE  L   + K L  + + +D    G            +Y L I+DW+LP +SGL
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQS 121
           E+C+++R  G+S PVL LTA    ++RV GLDAG DDYL KPF                 
Sbjct: 63  ELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRSP 122

Query: 122 HGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181
             +    TLG                 ++    + Q IAL+ +E  +    +Q P +I+S
Sbjct: 123 QFQPQILTLG--NFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIIS 180

Query: 182 HEEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGYCF 231
             +I   LW  +  P SN           K+ Q N P  I +V G+GY F
Sbjct: 181 GSKIRQQLWDLDEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGYRF 230


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score =  110 bits (274), Expect = 5e-27
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           +L+V++E  L   +   L ++G+ + VA  G  G   A     DL+I++  LP +SGLE+
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64

Query: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQSHG 123
           CR++R +G   P++ +TAKD +++RV GLDAG DDY++KPF                   
Sbjct: 65  CRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLR----- 119

Query: 124 ETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQR-IALSEKEVALLTLFLQAPGQILSH 182
            T T +   ++           ++       +G R I L+ KE  LL   L    Q+L+ 
Sbjct: 120 RTHTTSDEVLQFADLRFNRSTREIQ------RGDRLIDLTAKEFELLDYLLSHARQVLTR 173

Query: 183 EEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGY 229
           E+I   +W  +    SN           K+E    PRLI +V G GY
Sbjct: 174 EQILERVWGYDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGY 220


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score =  107 bits (268), Expect = 3e-26
 Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 23/240 (9%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIA-----GQ--YDLLILDWMLP 56
           IL+V+DE ++ E +  +L  +G+ +   D G+  LA+        GQ   DL+ILD MLP
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 57  QVSGLEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXX 116
           QV+GL++CR +R  G +TP+L ++AK +  ++V GL+ G DDY+ KPF            
Sbjct: 93  QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152

Query: 117 XXXQSHGETITETLGAVKXXXXXXXXXXXDVANQVAYC----QGQRIALSEKEVALLTLF 172
              Q            +            D+      C    +G+ ++L+ KE  LL LF
Sbjct: 153 IRRQ-----------GLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELF 201

Query: 173 LQAPGQILSHEEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQ-PNAPRLINSVYGKGYCF 231
           +  P ++ S E++  H+W  +    S            K+EQ P+ P  + +V G GY F
Sbjct: 202 MSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score =  107 bits (267), Expect = 3e-26
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 11/227 (4%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           ILLV+D+  L E L++AL  Q +T+D+A         A   +YDL+ILD MLP++ G+ +
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62

Query: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQSHG 123
           C++ R   +  P+L +TA+DT++D++ GLDAG DDY++KP                    
Sbjct: 63  CQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCAT 122

Query: 124 ETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHE 183
                  G ++               +V+Y   + ++L+ KE ++L L L+   ++LS  
Sbjct: 123 CQPVLEWGPIRLDPSTY---------EVSY-DNEVLSLTRKEYSILELLLRNGRRVLSRS 172

Query: 184 EIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPN-APRLINSVYGKGY 229
            I   +W  ESPP  +           K++    +   I +V+G GY
Sbjct: 173 MIIDSIWKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGY 219


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score =  104 bits (260), Expect = 2e-25
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 16/227 (7%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           ILL++D+N +   L   L   G  +D    GKTG+A   +  YD ++LD  LP++ GLE+
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQ-SH 122
            +Q R      PVL LTA+DTLD+RV GL +G DDYL KPF               +  +
Sbjct: 63  LQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGY 122

Query: 123 GETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182
             ++ E  G              D   +  +   Q I+L+ +E  LL LF+    ++LS 
Sbjct: 123 HHSVIEQAGV-----------KLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSR 171

Query: 183 EEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGY 229
             I   L   +   SS             + Q    + I +V+G GY
Sbjct: 172 SSIEEKLSSWDEEISSG----ALDVHIYNLRQKLGKQFIRTVHGVGY 214


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score =  104 bits (259), Expect = 3e-25
 Identities = 76/250 (30%), Positives = 110/250 (44%), Gaps = 38/250 (15%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           M  IL++DD+ A+++ +S  L   G+ +  A  G  G A+A+  Q DL++LD MLP+V G
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 61  LEICRQIRILGHST--PVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXX 118
             +C+++R    +   PVL LTA   + D++ G D+G DDYL KPF              
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPF-------------- 106

Query: 119 XQSHGETITETLGAVKXXXXXX-----XXXXXDVANQ----------VAYCQGQRIALSE 163
                  + E L  V+                ++ NQ           A   G+ I L+ 
Sbjct: 107 ------DVEEMLARVRALLRRTDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTH 160

Query: 164 KEVALLTLFLQAPGQILSHEEIYSHLWPGESPPSSNXXXXXXXXXXXKIE-QPNAPRLIN 222
            E  LL   LQ  GQ +S  +I   +W  E                 K+E  P  PR I 
Sbjct: 161 LEFELLHCLLQRHGQTVSPSDILREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIK 220

Query: 223 SVYGKGYCFE 232
           +VYG GYC E
Sbjct: 221 TVYGAGYCLE 230


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 97.8 bits (242), Expect = 3e-23
 Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           M NIL+V+D+  + + + + L  +  T  V + G+TGL +      DL++LD MLP++ G
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70

Query: 61  LEICRQIRIL-GHSTP-VLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXX 118
           LE+C +IR   G   P +L LTAK    DR+ GL  G DDYL+KPF              
Sbjct: 71  LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130

Query: 119 XQSHGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQ 178
            Q       + +G +              A++    + + + L+  E  LL  F+  PG+
Sbjct: 131 RQLRQ---GQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGR 187

Query: 179 ILSHEEIYSHLWPGESPPSSNXXXXXXXXXXXKIE-QPNAPRLINSVYGKGYCFE 232
           + +  ++   LW  +                 KIE  P  P  I +V G GY FE
Sbjct: 188 VWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 85.5 bits (210), Expect = 1e-19
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 12/232 (5%)

Query: 6   LVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEICR 65
           +VDDE ++   L   L   G+ +  A  G+  +A       DL++LD M+P++ G  +C+
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 66  QIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFX-XXXXXXXXXXXXXXQSHGE 124
           ++R      P++ LTA   + DR+ GL+ G DDY++KPF                  +G 
Sbjct: 61  ELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 125 TITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHEE 184
               + G ++           D   +  Y   +RI L+  E +LL L +   G+  S  E
Sbjct: 120 PGIPSSGVLQ-----IATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSE 174

Query: 185 IYSHLWPGESPP---SSNXXXXXXXXXXXKIEQ-PNAPRLINSVYGKGYCFE 232
           I   +W G +P     +            K+E+ P+ P LI +  G GY F+
Sbjct: 175 ILQEVW-GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 82.8 bits (203), Expect = 9e-19
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 14/233 (6%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           M+ +LLVDD+  LTE LS  L  +G  ++ A+ G   L   +   Y L++LD M+P+++G
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEAL-QKLNESYKLVLLDVMMPKLNG 59

Query: 61  LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF---XXXXXXXXXXXXX 117
           +E  ++IR + +  PV+ LTA+    DRV GL+ G DD L KPF                
Sbjct: 60  IETLKEIRKVSN-VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRS 118

Query: 118 XXQSHGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPG 177
              S+  +  E L                 ++ +A    + + L++ E  +L L L++ G
Sbjct: 119 ASPSNNISNVEIL--------SFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKG 170

Query: 178 QILSHEEIYSHLWPGESPPSSNXXXXXXXXXXXKI-EQPNAPRLINSVYGKGY 229
            ++S EE+   +      P              K+ ++ N P    ++ GKGY
Sbjct: 171 NVVSREELSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGY 223


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 82.0 bits (201), Expect = 2e-18
 Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           IL+V+DE A+ E ++  L  + + +  A   KT +   I     L++LDWMLP  SG++ 
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINK-IKENPKLILLDWMLPGRSGIQF 63

Query: 64  CRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQS 121
            + I+      + P++ LTAK T +D +A L+AG DDY+ KPF                 
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARI-------- 115

Query: 122 HGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181
             E +   +   +           D   Q  + Q Q I LS  E  LL  F++ P ++ S
Sbjct: 116 --EAVWRRIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYS 173

Query: 182 HEEIYSHLWPGESPPSSNXXXXXXXXXXXKIEQPNAPRLINSVYGKGYCFEA 233
            E++ + +W  +                  +        I +V G GY F +
Sbjct: 174 REQLLNRIWHNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRFSS 225


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 4/229 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           IL+V+DE      L      +G+ +  A+ G     +      +L+++D  LP  +GL +
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXXXXXXXXXXXXXXQSHG 123
            R++R    S P++FLT +D   D++ GL+ G DDYL KPF                   
Sbjct: 66  ARELRE-ELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAMPH 124

Query: 124 ETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHE 183
           +    T G  +             ++ +   +GQ   L   E   +  F + PG++ + E
Sbjct: 125 QEKENTFG--REFYRFNGWKLDLNSHSLITPEGQEFKLPRSEFRAMLHFCENPGKLQTRE 182

Query: 184 EIYSHLWPGESPPSSNXXXXXXXXXXXKIE-QPNAPRLINSVYGKGYCF 231
           E+   +   E  P                E  PN P +I +++G+GY F
Sbjct: 183 ELLKKMTGRELKPQDRTVDVTIRRIRKHFEDHPNTPNIIMTIHGEGYRF 231


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 14/189 (7%)

Query: 48  LLILDWMLPQVSGLEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFXXX 107
           L ++D  L    G+E+CR +    H + +  L+AKDT  D V GL AG DDYL KPF   
Sbjct: 50  LAVIDSDLTDGDGIELCRWL-YQQHQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFGMQ 108

Query: 108 XXXXXXX-XXXXXQSHGETITETLGAVKXXXXXXXXXXXDVANQVAYCQGQRIALSEKEV 166
                        ++    +    G +K           D+  +    QG  + L+ +E 
Sbjct: 109 EFLARIECLIRRVRTVAAPLLLDYGVLK----------IDLVQRRVEYQGNFVDLTPQEF 158

Query: 167 ALLTLFLQAPGQILSHEEIYSHLWPGESPPSSNXXXXXXXXXXXKIE-QPNAPRLINSVY 225
           +LL +  QA G  LS  E+    WP E+  +             KIE  P  P LI +V 
Sbjct: 159 SLLYVLTQAEGSALSRTELLRRAWP-EAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVR 217

Query: 226 GKGYCFEAN 234
             GY F ++
Sbjct: 218 NVGYRFNSS 226


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 62.8 bits (151), Expect = 1e-12
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 3   NILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLE 62
           ++LLVDD+  L   +   L +QG+ +  A  G+  L +      D+++ D M+P++ G  
Sbjct: 9   HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68

Query: 63  ICRQIRILGHST--PVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
              Q+R     +  PV+FL+AK    +RV GL+ G D Y+ KPF
Sbjct: 69  FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPF 112


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 62.4 bits (150), Expect = 1e-12
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKT--GLAMAIAGQYDLLILDWMLPQV 58
           M+ IL+V+DE  + E + + L  + + I  A+ G    GL  ++    DL+I D M+P++
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 59  SG--LEICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
            G  L    Q      + P +FLTA  T+ D   G+++G DDYLIKPF
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPF 108


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           MA +LLV+D     + LS+ L  +G+ + +A  G+  + MAI+    L+++D  LP + G
Sbjct: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63

Query: 61  LEICRQIRILGH----STPVLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
               +QI+  GH      P++ LTA     DR   + AG DDY  KP
Sbjct: 64  WTATKQIK--GHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 3   NILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLE 62
           NILLVDD     + LS  L + G+T+     GK  L      + DL++LD  +P + G +
Sbjct: 10  NILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQ 69

Query: 63  ICRQIRILG--HSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
           +C  I+        P++F++A     D+V   + GG DY+ KPF
Sbjct: 70  VCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPF 113


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 59.3 bits (142), Expect = 1e-11
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           IL+VDD       +S+ L  +G++      G   L      Q DL++LD M+P + GLE+
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 64  CRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
           C +++        PV+FLTA +   D +     G  DY+ KPF
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPF 122



 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 5   LLVDDENALTEPLSKALGHQ-GHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           +L+ ++N + + ++K L  + G+ +DV + G+  L+    G YD++++D  +P++ GL  
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 64  CRQI-RILGHSTP--VLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
              I R  G S    ++ +TA     DR   L +G +DY+ KP
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKP 844


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 2   ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           A+ILLV+D     E     L  +G  + VA+ G+  L +  +  YD +++D  +P ++G 
Sbjct: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777

Query: 62  EICRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
           +  R IR   +  + P++ +TA     D+   LDAG +D+L KP
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           M  +LLV+D ++  E +S  L   G  + +A  G   L        DL++LD ++P+++G
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 61  LEICRQIRI--LGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
            E+CR+I+      + PV+  ++K    DR  G+  G D Y+ KPF
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPF 132


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 56.6 bits (135), Expect = 7e-11
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           IL+VDD++   + L K L   G  I+ A  G+  +A+  + +  L+ +D  +P + G E 
Sbjct: 632 ILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEA 691

Query: 64  CRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
            + I+  + G++T V+ LTA    +++   L AG DD+L KPF
Sbjct: 692 TKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 3   NILLVDDENALTEPLSKALGHQGH-TIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           ++LLVDDE  + E +   L   G   +D+A                L+I D M+PQV G 
Sbjct: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGY 116

Query: 62  EICRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
           +  +++R      S PV+FLTA+    DR+ G   G D +L KPF
Sbjct: 117 QFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPF 161


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVAD--QGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           +LL+DD   +   + + +    +   VAD   G  G+++A+    D++ILD  +  +SGL
Sbjct: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66

Query: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIK 102
           +  + +R  G    +L LT  D  +D    +DAG D YL+K
Sbjct: 67  DTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLK 107


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 50.4 bits (119), Expect = 5e-09
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 4    ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
            ILL +D     +   + L + G+ + +A+ G+  +       YDL+++D  +P + G+  
Sbjct: 1192 ILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITA 1251

Query: 64   CRQIR---ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
            CR IR    L     ++ +TA     DR   LDAG D Y+ KP
Sbjct: 1252 CRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKP 1294


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 2    ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
            A ILLV+D     E  ++ L   G  +DVA  G   L       Y L+++D  +P++ G+
Sbjct: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984

Query: 62   EICRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
            E    IR        P++ +TA     DR   L AG +D+L KP
Sbjct: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKP 1028



 Score = 44.7 bits (104), Expect = 3e-07
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQ-----YDLLILDWMLPQV 58
           +L+VDD +     +   L      ++  + G   L            + ++ +DW +P +
Sbjct: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832

Query: 59  SGLEICRQIRILG--HSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
            GLE+ R+++ +G  H   +  +TA    +  V     G DD L+KP
Sbjct: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKP 879


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 48.5 bits (114), Expect = 2e-08
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 2   ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           A IL+VDD+  +   L   L  +GH +++A  G+  L      + ++++LD ++P + G 
Sbjct: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71

Query: 62  EICRQI-RILGHSTP-VLFLTAKDTLDDRVAGLDAGGDDYLIKP 103
             C+ + +I  + +P VL +T  D         +AG  DY+ KP
Sbjct: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKP 115


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 46.6 bits (109), Expect = 7e-08
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 4   ILLVDDENALTEPLSKALG--HQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           IL+V+D+  +   L +ALG   +   I   D G   +  A     DL+++D  LP + G+
Sbjct: 19  ILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDGI 78

Query: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIK 102
           E  +QI+       ++ LT+    ++ +A L +G D Y +K
Sbjct: 79  EATKQIKQTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVK 119


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           +L+VDD       L + L   G  +  A+ G+  +A+  +    ++++D  +P + G   
Sbjct: 420 VLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRST 479

Query: 64  CRQIRIL--GHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPF 104
            ++I+    G  T ++ LTA     +R   L AG DD+L KPF
Sbjct: 480 TQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPF 522


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVA---DQGKTGLAMAIAGQYDLLILDWMLPQVSG 60
           ILLV+D+      L   L  Q   +DVA   + G+T +A      +D++ILD  LP + G
Sbjct: 10  ILLVEDDELFRLGLVTRLS-QEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68

Query: 61  LEICRQIRILGHSTPVLFLT--AKDTLDDRVAGLDAGGDDYLIK 102
           +E C QI+ +    PVL LT  ++  L +R+  ++A    Y +K
Sbjct: 69  IEACHQIKKIHPQLPVLILTSHSQPALINRL--IEAQAQGYCVK 110


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 4   ILLVDDENALTEPLSKALGHQG--HTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61
           I L++DE+ + + L  AL  +     +  A  G+ GL M    + D++I+D  LP ++G+
Sbjct: 6   IALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGI 65

Query: 62  EICRQIR--ILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIK 102
           ++ +Q++   L     V+ LT  D  +  +A   AG D Y +K
Sbjct: 66  DVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMK 108


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 45.1 bits (105), Expect = 2e-07
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
           +LLVDD+      LS+AL      I  A+ G+  +A A   ++ L+IL   + ++ GL  
Sbjct: 9   VLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGLNT 68

Query: 64  CRQIRI--LGHSTPVLFLTAKDTLDDRVAGLD-AGGDDYLIKP 103
            + +R   L   TP++FL  ++ +   +A ++  G  D+L +P
Sbjct: 69  AKILRSFPLAEQTPIIFLARQEIITKAMAEINILGLVDFLAQP 111


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.317    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,087
Number of Sequences: 78
Number of extensions: 674
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 32
Number of HSP's better than  0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 42
length of query: 234
length of database: 48,235
effective HSP length: 60
effective length of query: 174
effective length of database: 43,555
effective search space:  7578570
effective search space used:  7578570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002731 slr1909 
         (213 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002731 slr1909                                            389   e-111
SYNE-PCC-01-002635 slr1783                                            134   3e-34
SYNE-PCC-01-002033 slr0947                                             97   5e-23
SYNE-PCC-01-002086 slr1042                                             89   1e-20
SYNE-PCC-01-001461 slr0115                                             89   1e-20
SYNE-PCC-01-002489 slr1588                                             88   2e-20
SYNE-PCC-01-000608 sll0921                                             84   5e-19
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   83   8e-19
SYNE-PCC-01-001575 slr0312                                             82   2e-18
SYNE-PCC-01-001306 sll1905                                             82   2e-18
SYNE-PCC-01-000414 sll0649                                             81   3e-18
SYNE-PCC-01-001133 sll1673                                             78   3e-17
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    74   4e-16
SYNE-PCC-01-001437 slr0081                                             73   6e-16
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    72   1e-15
SYNE-PCC-01-002672 slr1837                                             71   2e-15
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    69   1e-14
SYNE-PCC-01-001160 sll1708                                             68   3e-14
SYNE-PCC-01-002951 ssl0564                                             67   3e-14
SYNE-PCC-01-000242 sll0396                                             65   1e-13
SYNE-PCC-01-002873 slr2098                                             64   4e-13
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    63   9e-13
SYNE-PCC-01-002788 slr1982                                             62   1e-12
SYNE-PCC-01-002879 slr2104                                             62   2e-12
SYNE-PCC-01-002486 slr1584                                             60   4e-12
SYNE-PCC-01-001075 sll1592                                             59   1e-11
SYNE-PCC-01-000800 sll1228                                             57   5e-11
SYNE-PCC-01-000523 sll0797                                             55   2e-10
SYNE-PCC-01-002617 slr1759                                             54   4e-10
SYNE-PCC-01-000518 sll0789                                             52   1e-09
SYNE-PCC-01-002618 slr1760                                             50   4e-09
SYNE-PCC-01-000877 sll1330                                             50   6e-09
SYNE-PCC-01-001132 sll1672                                             48   2e-08
SYNE-PCC-01-000511 sll0782                                             45   2e-07
SYNE-PCC-01-002221 slr1213                                             44   4e-07
SYNE-PCC-01-001039 sll1544                                             42   2e-06

>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score =  389 bits (1000), Expect = e-111
 Identities = 197/213 (92%), Positives = 197/213 (92%)

Query: 1   MSQSKENYHXXXXXXXXXXXXXXXXYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIM 60
           MSQSKENYH                YLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIM
Sbjct: 1   MSQSKENYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIM 60

Query: 61  MPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQ 120
           MPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQ
Sbjct: 61  MPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQ 120

Query: 121 VQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS 180
           VQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS
Sbjct: 121 VQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS 180

Query: 181 QRTVESHVSNMLNKTGLHNRTELARWAIQKSIA 213
           QRTVESHVSNMLNKTGLHNRTELARWAIQKSIA
Sbjct: 181 QRTVESHVSNMLNKTGLHNRTELARWAIQKSIA 213


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score =  134 bits (336), Expect = 3e-34
 Identities = 75/207 (36%), Positives = 124/207 (59%), Gaps = 20/207 (9%)

Query: 26  YLEYQG-YQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPV 84
           +LE  G ++V  A N  EA D L   +P +++ DIMMP++DGY F++++R++     +PV
Sbjct: 74  FLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQFLQKLREDARFQSLPV 133

Query: 85  MFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCL--RQADRLLQHNNHPLED- 141
           +FL+A+G + +R++G   G D +++KPF+P+EL A V++ L  +QA       +  L++ 
Sbjct: 134 VFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQQASSDAGSESAKLQEI 193

Query: 142 -----NARVQVAR-----------DVELTPTETKVIQLVAQGLANREIADHLKVSQRTVE 185
                  + Q+ +            ++ TP E  V+ LV+QGL N+EIA  LK S R VE
Sbjct: 194 YQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLMNKEIAAQLKTSVRNVE 253

Query: 186 SHVSNMLNKTGLHNRTELARWAIQKSI 212
            +VS +  KTG ++RTEL R+A+Q  +
Sbjct: 254 KYVSRLFTKTGTNSRTELVRFALQHGL 280


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 96.7 bits (239), Expect = 5e-23
 Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 26/187 (13%)

Query: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
           GY+V TA +G EA+     + PD++V D+MMP++DGY   +++R+  DI   P++ L+A 
Sbjct: 20  GYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQELRKESDI---PIIMLTAL 76

Query: 91  GQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADR----------LLQHNNHPLE 140
           G   +R+ GL +GAD Y+ KPF P+EL A+++S LR+ D+          +LQ     ++
Sbjct: 77  GDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMPGIPSSGVLQIATIRID 136

Query: 141 DNARVQVARD--VELTPTETKVIQLV----AQGLANREIADHL-------KVSQRTVESH 187
            N R     D  + LT  E  +++L+     +  +  EI   +        V  R V+ H
Sbjct: 137 TNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWGYTPERHVDTRVVDVH 196

Query: 188 VSNMLNK 194
           +S +  K
Sbjct: 197 ISRLRAK 203


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 89.0 bits (219), Expect = 1e-20
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           L+  G+QVT A +G EAL+ L    PD++V DI+MP M+GY    +++ +P    +PV+ 
Sbjct: 47  LKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM 106

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR 126
            S+KG+  +R  G+  GAD Y+AKPF+P EL   ++  LR
Sbjct: 107 CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 88.6 bits (218), Expect = 1e-20
 Identities = 42/111 (37%), Positives = 72/111 (64%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           LE  GY V  A +G +   L     PD+I+ D+M+P++DG+   +++R++   + IPV+ 
Sbjct: 21  LEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTVCQRLRRDERTADIPVLM 80

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNH 137
           L+A GQ  ++++G + GAD Y+ KPF+ EE+ A+V++ LR+ DR+ Q   H
Sbjct: 81  LTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTDRIPQAAKH 131


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 88.2 bits (217), Expect = 2e-20
 Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 7/154 (4%)

Query: 27  LEYQGYQVTTAGNGREALDLLTT--TVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPV 84
           L  + Y++  A NG  AL LL +   +PD+I+CD+MMPEMDG+  I  +++N   + IP 
Sbjct: 21  LSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGHGLITALQKNAKTAAIPF 80

Query: 85  MFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNAR 144
           +FL+A G   +  KG+N GAD Y+ KPF+ E+L   V S L++  +L       +  +  
Sbjct: 81  IFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSRLQKQAKLSAFYQGSISSSLT 140

Query: 145 VQVARD-----VELTPTETKVIQLVAQGLANREI 173
            +  R        LTP E ++ + +  GL   ++
Sbjct: 141 ERPRRSGTIGTPTLTPDEAEIWRDLEVGLNTGQV 174


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 83.6 bits (205), Expect = 5e-19
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 10/189 (5%)

Query: 34  VTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQS 93
           V  A NGR  L ++  T PD+++ DI +P+M+G    +Q+++ P      V+ L+   Q 
Sbjct: 32  VGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQE 91

Query: 94  HNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ--------ADRLLQH--NNHPLEDNA 143
              +   + GAD Y  K    E L   +Q+            A  +L H     P E ++
Sbjct: 92  ETVLAAFSAGADAYCMKDSRTELLIEAIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSS 151

Query: 144 RVQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTEL 203
             + +    LT  E +V+QL+  G +N +IA+ L ++  TV++HV N+LNK   ++RT+ 
Sbjct: 152 PSRTSLSYGLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQA 211

Query: 204 ARWAIQKSI 212
           A  AI+  +
Sbjct: 212 AVRAIRSGL 220


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 82.8 bits (203), Expect = 8e-19
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 32/192 (16%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           LE +G+ V TA NG EAL  L  +   +++ D+MMP+++G   ++++R+   +S +PVM 
Sbjct: 21  LELEGFDVETANNGLEALQKLNESYK-LVLLDVMMPKLNGIETLKEIRK---VSNVPVMM 76

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA---------------DRL 131
           L+A+G+  +RV GL +GAD  + KPF   EL A++++ LR++               D +
Sbjct: 77  LTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRRSASPSNNISNVEILSFDGI 136

Query: 132 LQHNNHPLEDNARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVS---------QR 182
             H +H +          ++ LT  E K++ L+ +   N    + L +           R
Sbjct: 137 TLHFSHGI----ATYNEENLNLTDYEFKILCLLLKSKGNVVSREELSLEVMEKPLTPFDR 192

Query: 183 TVESHVSNMLNK 194
           +++ H+SN+  K
Sbjct: 193 SLDMHISNLRRK 204


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 34  VTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQS 93
           +  A NG +A+ L     PD+ + D+ MPE++G A I  +     + +  ++ L+     
Sbjct: 35  IAQAENGEQAIALFEEHQPDVTLMDLRMPEVEGVAAISAICAI--VKFARIIVLTTYDSD 92

Query: 94  HNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNAR-VQVARDVE 152
            +  +GL  GA  Y+ K  EP+EL   +++  R    +      P +  A+ VQ   + E
Sbjct: 93  EDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGQKYI------PPDVGAKLVQRLSNPE 146

Query: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKSI 212
           L+  E +V+  +AQG++N +IA  L + + TV+SHV+ +LNK  + +RT+    A+++ I
Sbjct: 147 LSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 1/122 (0%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           LE +GY  T   +G EAL  +T   PD+I+ D+MMP MDG    ++++Q+P    IPV+F
Sbjct: 37  LEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIF 96

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNARVQ 146
           L+A  +  + ++    GA  Y+ KPF P EL A+V++ L +  +   + +H L + AR  
Sbjct: 97  LTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL-ELKQTRDNLHHTLLEQARTA 155

Query: 147 VA 148
            A
Sbjct: 156 EA 157



 Score = 52.8 bits (125), Expect = 9e-10
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIP-VM 85
           L+  GY V    NG+EAL  L     D+++ D+ MPEMDG    E +R++   S  P ++
Sbjct: 759 LKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWII 818

Query: 86  FLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQ 122
            ++A     +R + L  G + Y++KP   E L   +Q
Sbjct: 819 AVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 80.9 bits (198), Expect = 3e-18
 Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 32/195 (16%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           LE + +      +G   L +    VPD+IV D+M+P++DG     ++RQ P      ++ 
Sbjct: 31  LEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEVCTRIRQQPGSKDPYILM 90

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADR------LLQHNNHPLE 140
           L+AKG+  +R+ GL+ GAD Y+ KPF P EL A+V++ LR+  R       +   NH   
Sbjct: 91  LTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQLRQGQPVGQIYRTNHFQV 150

Query: 141 DNARVQVAR-------DVELTPTETKVI--------------QLVAQGLANREIADHLKV 179
           D  + Q +R       ++ELT  E  ++              QL+ +   N    D    
Sbjct: 151 DLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQLIEKLWGNDFFGD---- 206

Query: 180 SQRTVESHVSNMLNK 194
            +R V++H+  +  K
Sbjct: 207 -ERVVDTHIRRLRKK 220


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 77.8 bits (190), Expect = 3e-17
 Identities = 35/92 (38%), Positives = 58/92 (63%)

Query: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
           GY V +  +G+ AL  L    PD+I+ DI MP+MDGY   E +++  ++  IP++F+SA 
Sbjct: 32  GYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQVCEMIKKEEELQDIPIIFISAL 91

Query: 91  GQSHNRVKGLNVGADIYMAKPFEPEELAAQVQ 122
           G + ++VK    G   Y+ KPF+ EE+ A+++
Sbjct: 92  GDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 48/181 (26%), Positives = 94/181 (51%), Gaps = 16/181 (8%)

Query: 26  YLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVM 85
           +L  + Y V  A + + A++ +    P +I+ D M+P   G  FI+ +++    + IP++
Sbjct: 21  FLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQFIQYIKKQESYAAIPII 79

Query: 86  FLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLR----QADRLLQHNNHPLED 141
            L+AK    + +  LN GAD Y+ KPF P+ L A++++  R    Q  + +Q +   +++
Sbjct: 80  MLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRIYEQQSQFIQIDELSIDE 139

Query: 142 NAR--VQVARDVELTPTETKVIQLV---------AQGLANREIADHLKVSQRTVESHVSN 190
           NA+      +++ L+ TE K++             + L NR   + L+V  RTV+S++  
Sbjct: 140 NAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIWHNDLEVEYRTVDSYIRR 199

Query: 191 M 191
           +
Sbjct: 200 L 200


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 73.2 bits (178), Expect = 6e-16
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 27  LEYQGYQVTTAGNGREALDLLTT-------TVPDMIVCDIMMPEMDGYAFIEQVRQNPDI 79
           L+ +GY+V    +GR+AL LL            D+I+ DIM+P+++G      +R   D 
Sbjct: 50  LQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFGGDN 109

Query: 80  SWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPL 139
           +  P++ +SAKG    +V GL VGAD Y+ KPF  +EL A+ ++ +R+    L  NN   
Sbjct: 110 T--PILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAMIRRQG--LAGNN--- 162

Query: 140 EDNARVQVARDVELTPTETKVI 161
              A  +  RD+ L P E +V+
Sbjct: 163 --IAPFRKFRDLVLYPQECRVL 182


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 72.4 bits (176), Expect = 1e-15
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)

Query: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
           G+ V    +G+  +  LT+   D +V D+ +P++DG   ++Q R N     +PV+ L+A+
Sbjct: 24  GFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQD--VPVLILTAR 81

Query: 91  GQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA----DRLLQHNNHPLEDNARVQ 146
                RVKGL  GAD Y+ KPF   E+AA++Q+ +R+       +++     L+ N R  
Sbjct: 82  DTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSV 141

Query: 147 VARD--VELTPTETKVIQLVA----QGLANREIADHL-----KVSQRTVESHVSNMLNKT 195
              +  + LT  E K+++L      + L+   I + L     ++S   ++ H+ N+  K 
Sbjct: 142 WLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKL 201

Query: 196 G 196
           G
Sbjct: 202 G 202


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 71.2 bits (173), Expect = 2e-15
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 22/182 (12%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           L +QG+ +  A  G+  L +      D+++ D M+P++ G     Q+R     +  PV+F
Sbjct: 21  LGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEICRQIRILGHST--PVLF 78

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ--------------ADRLL 132
           L+AK    +RV GL+ G D Y+ KPFE  EL A+V++ LR+               + LL
Sbjct: 79  LTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQSHGETITETLGAVKNNLL 138

Query: 133 QHNNHPLEDNARVQVARDVELTPTETKV------IQLVAQGLANREIADHLKVSQRTVES 186
             NN  L+   +V   +   +  +E +V      +Q   Q L++ EI  HL   +    S
Sbjct: 139 SVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSHEEIYSHLWPGESPPSS 198

Query: 187 HV 188
           +V
Sbjct: 199 NV 200


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 68.9 bits (167), Expect = 1e-14
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 27/179 (15%)

Query: 34  VTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLS-AKGQ 92
           V    +G E + +   T PD+I+ D+ M  + G   ++ +R     + I ++ +S AK  
Sbjct: 33  VADVSSGTEGISVALQTSPDVIILDLNMKGLSGLDTLKGLRAEGVDARILILTVSDAKND 92

Query: 93  SHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQ-----------HNNHPLED 141
            +  +   + GAD Y+ K  EP+ L  Q++  + Q + +L            H ++PL+ 
Sbjct: 93  IYTLI---DAGADGYLLKDTEPDTLLEQIKR-IAQGEVILSDSIKNLLLERTHEDNPLDS 148

Query: 142 NARVQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNR 200
                      LT  E  V++ +A GL+N++IA  L +S+ TV+ H+ N+L K  +H+R
Sbjct: 149 -----------LTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSR 196


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 67.8 bits (164), Expect = 3e-14
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 12/181 (6%)

Query: 39  NGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVK 98
           NG  A+       PD+IV DI +P +DG    +Q++Q      I ++ L++    +  + 
Sbjct: 50  NGYGAVQQAAVLNPDLIVMDIGLPGLDGIEATKQIKQTSP--QIHIVVLTSHTLPNEIIA 107

Query: 99  GLNVGADIYMAKPFEPEELAAQVQSCLR-------QADRLLQHNNHPLEDNARVQVARDV 151
            L+ GAD Y  K    E L   + +          Q  R++  N  P     +  V+   
Sbjct: 108 ALSSGADAYCVKGATLERLILAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVS--- 164

Query: 152 ELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQKS 211
            L+  E  V++L+ +G +N+EIA  L +S  T+++HV  ++NK  + +R + A  A++  
Sbjct: 165 SLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSG 224

Query: 212 I 212
           +
Sbjct: 225 L 225


>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score = 67.4 bits (163), Expect = 3e-14
 Identities = 29/57 (50%), Positives = 44/57 (77%)

Query: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQ 209
           L+  E +++ LVA GL N+E+++ L++S+RTV++HVSN+L KT   NR EL RWA+Q
Sbjct: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 65.5 bits (158), Expect = 1e-13
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           L+Y+GY V+ A +G +         PD+I+ +  +P M G     ++R+    S IP++ 
Sbjct: 22  LKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLELCRRLREMG--SRIPIIL 79

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ----ADRLLQHNNHPLEDN 142
           ++AK     RV GL+ GAD Y+ KPF  +E  A+++  LR+    +D +LQ  +     +
Sbjct: 80  ITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHTTSDEVLQFADLRFNRS 139

Query: 143 ARVQVARDVELTPTETKVIQLVAQGLAN-REIADHLKVSQR 182
            R ++ R   L     K  +L+   L++ R++    ++ +R
Sbjct: 140 TR-EIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILER 179


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 63.9 bits (154), Expect = 4e-13
 Identities = 31/87 (35%), Positives = 49/87 (56%)

Query: 31   GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
            G+ V  A NG  AL+ L      +++ D+ MPEMDG      +RQNP  + +P++ ++A 
Sbjct: 948  GFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTAN 1007

Query: 91   GQSHNRVKGLNVGADIYMAKPFEPEEL 117
                +R + L  G + ++ KP EPEEL
Sbjct: 1008 VMQGDRERCLQAGMNDHLGKPIEPEEL 1034


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 62.8 bits (151), Expect = 9e-13
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 28  EYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFL 87
           E +GY V  A NG E   +L     +++V DI +P  +G     ++R+   +   P++FL
Sbjct: 24  EAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLLARELREELSL---PLIFL 80

Query: 88  SAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128
           + +    +++ GL +GAD Y+ KPF P EL  + ++ L +A
Sbjct: 81  TGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRA 121


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 62.0 bits (149), Expect = 1e-12
 Identities = 27/96 (28%), Positives = 58/96 (60%)

Query: 30  QGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSA 89
           +GY+V  A +G +A+ +  +  P +I+ D+ +P +DG+   +Q++ +PD + IP++ L+A
Sbjct: 27  KGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTATKQIKGHPDGAHIPIIALTA 86

Query: 90  KGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCL 125
              + +R + +  G D Y  KP E + L  ++++ +
Sbjct: 87  HAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 31/91 (34%), Positives = 53/91 (58%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           L  +G +V  A NG+EAL LLT+   D I+ DI MP ++GY     +RQ      +P++ 
Sbjct: 737 LTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIA 796

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEEL 117
           ++A   + ++ K L+ G + ++ KP +P+ L
Sbjct: 797 MTANAMAGDQEKALDAGMNDHLTKPIKPDLL 827


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 60.5 bits (145), Expect = 4e-12
 Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 27  LEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMF 86
           L  Q Y V  A +   A D  +    D+++ D+M+PE+DG    ++ R +  +  +P++ 
Sbjct: 20  LSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITLCQKWRSHSYL--MPILM 77

Query: 87  LSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQH--NNHPLE-DNA 143
           ++A+   ++++ GL+ GAD Y+ KP +  EL A+V++ LR+     Q      P+  D +
Sbjct: 78  MTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCATCQPVLEWGPIRLDPS 137

Query: 144 RVQVARDVE---LTPTETKVIQLVAQG----LANREIADHL-----KVSQRTVESHVSNM 191
             +V+ D E   LT  E  +++L+ +     L+   I D +        + TV+ HV ++
Sbjct: 138 TYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWKLESPPEEDTVKVHVRSL 197

Query: 192 LNK 194
             K
Sbjct: 198 RQK 200


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 37  AGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQ-NPDISWIPVMFLSAKGQSHN 95
           A +G  A+  +   + D+++ D+ +P + G     Q+++ +P +   PV+ L++  Q   
Sbjct: 39  AEDGETAIAYVNQQLFDVVILDVGLPGIGGIEACHQIKKIHPQL---PVLILTSHSQPAL 95

Query: 96  RVKGLNVGADIYMAKPFEPEELAAQVQSCL-----------RQADRLLQHNNHPLEDNAR 144
             + +   A  Y  K    E L   ++S             ++     QH++        
Sbjct: 96  INRLIEAQAQGYCVKGVAAETLVLAIRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPL 155

Query: 145 VQVARDVELTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELA 204
                +  LT  E +++ LVA+G +N+EIAD L ++  TV  HV  +L K  + +RT+ A
Sbjct: 156 ADADGENPLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAA 215

Query: 205 RWAIQKSI 212
             AI++ +
Sbjct: 216 LLAIERRL 223


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
           G+ V  A NG  A+ L  +  P +I+ D+ MP +DG +  ++++ +P      ++ L+A 
Sbjct: 441 GFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTAS 500

Query: 91  GQSHNRVKGLNVGADIYMAKPFEPEELAA 119
                R + L+ G D +++KPF PEEL A
Sbjct: 501 AFEGERAEILSAGCDDFLSKPFRPEELIA 529


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 4/99 (4%)

Query: 32  YQVTTAGNGREALDLLTT--TVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSA 89
           Y V    +G +A D L    T   + + D ++P + G    +++R   +   +PV+ L+A
Sbjct: 25  YVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGLELCQKLRTQGNS--LPVLMLTA 82

Query: 90  KGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128
            G+  NRV+GL+ GAD Y+ KPF   EL A++++  R++
Sbjct: 83  LGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRS 121


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 53.9 bits (128), Expect = 4e-10
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 31   GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIP-VMFLSA 89
            GY V  A NG+E +D L     D+++ D+ MP MDG      +RQ   +   P ++ ++A
Sbjct: 1213 GYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPRIVAMTA 1272

Query: 90   KGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQ 122
                 +R + L+ G D Y++KP    +L   +Q
Sbjct: 1273 NAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 54  MIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFE 113
           + + D M+P + G    +++R     S +P++ L+AK Q  +RV+GL+ GAD Y+ KPF 
Sbjct: 49  LAIFDWMVPGLSGLELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKPFG 106

Query: 114 PEELAAQVQSCLRQADRL 131
             EL A+++S  R++  L
Sbjct: 107 MAELLARLRSLQRRSPEL 124


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 50.4 bits (119), Expect = 4e-09
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 26  YLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIE---QVRQNPDISWI 82
           YL+ +G++V  A NG EAL       P++++ D +MP MDG+A  +   ++ QNP     
Sbjct: 30  YLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGFACCQALMKIYQNPSPL-- 87

Query: 83  PVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHN----NHP 138
            V+ ++      +  +    GA  Y+ KP     L  +V+  L Q    LQH     N  
Sbjct: 88  -VLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ--NRLQHQLESVNQM 144

Query: 139 LEDNARV 145
           LE  A+V
Sbjct: 145 LERLAKV 151


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 50.1 bits (118), Expect = 6e-09
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 18/184 (9%)

Query: 26  YLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVM 85
           +L+  GY V       +A       +P + V D  + + DG      + Q        + 
Sbjct: 22  HLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIELCRWLYQQHQSM---IF 78

Query: 86  FLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ-----ADRLLQHNNHPLE 140
            LSAK    + V GL  GAD Y+ KPF  +E  A+++  +R+     A  LL +    ++
Sbjct: 79  ILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLIRRVRTVAAPLLLDYGVLKID 138

Query: 141 -DNARVQVARD-VELTPTETKVIQLVAQGLAN--------REIADHLKVSQRTVESHVSN 190
               RV+   + V+LTP E  ++ ++ Q   +        R        + RT+++HV +
Sbjct: 139 LVQRRVEYQGNFVDLTPQEFSLLYVLTQAEGSALSRTELLRRAWPEAIDNPRTIDTHVLS 198

Query: 191 MLNK 194
           +  K
Sbjct: 199 LRKK 202


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 43/82 (52%)

Query: 31  GYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAK 90
           G+++  A NG+EA+ L  +  P +I  D+ MP MDGY   + ++     +   V+ L+A 
Sbjct: 653 GFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKGNATAVVALTAS 712

Query: 91  GQSHNRVKGLNVGADIYMAKPF 112
                +   L+ G D ++ KPF
Sbjct: 713 VLEEEKAIVLSAGCDDFLRKPF 734


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 44.7 bits (104), Expect = 2e-07
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNR 200
           L+  E +++ L+AQGL +R+IA+ L +S+ TV+ HV+  L+K    NR
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNR 356


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 43.9 bits (102), Expect = 4e-07
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 27  LEYQGYQVTT-AGNGREALDLLTTTVPDMIVCDIMMP-EMDGYAFIEQVRQNPDISWIPV 84
           L+  GY++   A +G  AL  +    PD+++ DI +  E+DG    E+++    +  IP+
Sbjct: 22  LKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEIDGIEVAERIKS---LYSIPI 78

Query: 85  MFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNAR 144
           ++L+A        +        Y+ KPF  E+L + V   +       Q    P ED   
Sbjct: 79  VYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIAIANH----QQQRKPEEDTLS 134

Query: 145 VQVARDVELTPTETKVIQLVAQGLANREIADHLKVS 180
                   L PT   + + + QG+    +A  + +S
Sbjct: 135 TSTGH-YRLQPTLDYIEEHLDQGITVEFLAGAIGMS 169


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 103 GAD-IYMAKPFEPEELAAQVQSCLRQADRLLQHNNHPLEDNARVQVARDVELTPTETKVI 161
           GAD I++       E+   V+ CL Q    +      + D  + Q  +D ELT  E  ++
Sbjct: 120 GADAIFLESSLGNGEINLAVE-CLLQGRTYIDSRLEAIADYRKSQ--KD-ELTQREVAIL 175

Query: 162 QLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELA 204
           +LVA+G  N EI   L ++  TV  +V  ++ K    +RT  A
Sbjct: 176 RLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAA 218


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,166
Number of Sequences: 78
Number of extensions: 728
Number of successful extensions: 64
Number of sequences better than 1.0e-05: 36
Number of HSP's better than  0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 39
length of query: 213
length of database: 48,235
effective HSP length: 59
effective length of query: 154
effective length of database: 43,633
effective search space:  6719482
effective search space used:  6719482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002778 slr1969 
         (750 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002778 slr1969                                           1407   0.0  
SYNE-PCC-01-002617 slr1759                                            171   1e-44
SYNE-PCC-01-000295 sll0474                                            152   3e-39
SYNE-PCC-01-000800 sll1228                                            147   1e-37
SYNE-PCC-01-001517 slr0222                                            136   3e-34
SYNE-PCC-01-001280 sll1871                                            135   4e-34
SYNE-PCC-01-002879 slr2104                                            134   1e-33
SYNE-PCC-01-001132 sll1672                                            130   1e-32
SYNE-PCC-01-002873 slr2098                                            129   3e-32
SYNE-PCC-01-002220 slr1212                                            126   3e-31
SYNE-PCC-01-001509 slr0210                                            121   9e-30
SYNE-PCC-01-001306 sll1905                                            118   7e-29
SYNE-PCC-01-000891 sll1353                                            115   6e-28
SYNE-PCC-01-000985 sll1475                                            109   3e-26
SYNE-PCC-01-000983 sll1473                                            100   2e-23
SYNE-PCC-01-000542 sll0821                                             99   5e-23
SYNE-PCC-01-001294 sll1888                                             96   3e-22
SYNE-PCC-01-001690 slr0473                                             74   1e-15

>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 1407 bits (3642), Expect = 0.0
 Identities = 724/750 (96%), Positives = 724/750 (96%)

Query: 1   MLPAFSPIFRRLLPAVTFERLLRFWRTLAQQTGDGVQCFVGDXXXXXXXXXXXXXXEAEV 60
           MLPAFSPIFRRLLPAVTFERLLRFWRTLAQQTGDGVQCFVGD              EAEV
Sbjct: 1   MLPAFSPIFRRLLPAVTFERLLRFWRTLAQQTGDGVQCFVGDLPSSLKPPPGPSVLEAEV 60

Query: 61  DHRFALLVSPGQWALLEGEQISPHHYAVSITFAQGIIEDFIQKQNLPVVAEAMPHRPETP 120
           DHRFALLVSPGQWALLEGEQISPHHYAVSITFAQGIIEDFIQKQNLPVVAEAMPHRPETP
Sbjct: 61  DHRFALLVSPGQWALLEGEQISPHHYAVSITFAQGIIEDFIQKQNLPVVAEAMPHRPETP 120

Query: 121 SGPTIAEQLTLGLLEILNSDSTSFSPEPSLQDSLQASQVKLLSQVIAQIRQSLDLSEILN 180
           SGPTIAEQLTLGLLEILNSDSTSFSPEPSLQDSLQASQVKLLSQVIAQIRQSLDLSEILN
Sbjct: 121 SGPTIAEQLTLGLLEILNSDSTSFSPEPSLQDSLQASQVKLLSQVIAQIRQSLDLSEILN 180

Query: 181 NAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQIPAPRPRQQYGEVTYEARRSPEIDTM 240
           NAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQIPAPRPRQQYGEVTYEARRSPEIDTM
Sbjct: 181 NAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQIPAPRPRQQYGEVTYEARRSPEIDTM 240

Query: 241 LGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIV 300
           LGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIV
Sbjct: 241 LGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIV 300

Query: 301 EGQLWGLLIAHQCHHPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIE 360
           EGQLWGLLIAHQCHHPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIE
Sbjct: 301 EGQLWGLLIAHQCHHPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIE 360

Query: 361 RTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQ 420
           RTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQ
Sbjct: 361 RTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQ 420

Query: 421 YYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQI 480
           YYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQI
Sbjct: 421 YYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQI 480

Query: 481 NLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVED 540
           NLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVED
Sbjct: 481 NLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVED 540

Query: 541 TGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTI 600
           TGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTI
Sbjct: 541 TGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTI 600

Query: 601 FTTVIPQQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLI 660
           FTTVIPQQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLI
Sbjct: 601 FTTVIPQQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLI 660

Query: 661 DTTNALQQVELLQPGLIIVDGDFVDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALS 720
           DTTNALQQVELLQPGLIIVDGDFVDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALS
Sbjct: 661 DTTNALQQVELLQPGLIIVDGDFVDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALS 720

Query: 721 QKGIDDYXXXXXXXXXXXXRVQSIQQEPLR 750
           QKGIDDY            RVQSIQQEPLR
Sbjct: 721 QKGIDDYLLKPLQPELLLQRVQSIQQEPLR 750


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  171 bits (432), Expect = 1e-44
 Identities = 139/510 (27%), Positives = 235/510 (46%), Gaps = 61/510 (11%)

Query: 151  QDSLQA--SQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLT 208
            QD LQ   +Q+ L+ ++  +IR+SL  + I   A   V     V R +I+ +  +     
Sbjct: 575  QDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAARQVGNVFAVSRCLIHNYSEATTLQV 634

Query: 209  PLEENQIPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKG-AVVA 267
            P+    +         GE+  E    P I                       ++G   +A
Sbjct: 635  PVVAEYLGGQFTSLLAGEIAVEQAYDPTI-----------------------IQGDRAMA 671

Query: 268  VSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFL 327
            V D++   +S++      QR+QV++ L      +G+  G++  HQC   R W   E   L
Sbjct: 672  VVDLDQDLNSTHTKA-FYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEIELL 730

Query: 328  GQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNIS 387
              I E + +A+ Q+ L  + ++++    + + ++  EL     AA+AAN  K +F+  +S
Sbjct: 731  EAIAEQMGIALAQAALLEKERERR----RELAQKNLELEKATWAAEAANRAKGEFLAMMS 786

Query: 388  HELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLE 447
            HE+RTP+  +IG++  L+    +       +Q  Y+  I+++G+ LL  IN I+  S++E
Sbjct: 787  HEIRTPMNGVIGMTELLIMTDLN------LQQLDYVQTIRQSGETLLTIINDILDFSKIE 840

Query: 448  SGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQD-QFCADQERLDQIL 506
            + +  L  Q+F L  L +TV+     +A  +  +LEL Y I+     +   DQ RL QIL
Sbjct: 841  ADKLVLETQAFELRPLIETVLEMFGPIARAK--HLELTYGIDPQTPARILGDQVRLRQIL 898

Query: 507  TQLLNNALKFT---------------PAEGT-VILRIWKESNQAIFQVEDTGIGINEQQL 550
            + L+ NALKFT               PAE    IL +   S++  F + DTGIGI   + 
Sbjct: 899  SNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQ 958

Query: 551  PVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNF 610
              LF++F     S T  Y   G+GL ++++L ++ GG + V S PG G+ F   I     
Sbjct: 959  DRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCI----- 1013

Query: 611  PPTTKGQVQDKLDAAMPFNSSVIVIEQDEE 640
              T +     + D+        ++I  D E
Sbjct: 1014 LTTAQAPALAEADSVQQMKGKQVLIVDDNE 1043


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  152 bits (385), Expect = 3e-39
 Identities = 107/318 (33%), Positives = 165/318 (51%), Gaps = 20/318 (6%)

Query: 355 EKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASL 414
           E +  E   +L + ++A   A  LK +F+ N+SHELRTPL SI+G+  TL      P + 
Sbjct: 396 EIKKAEEQLKLSNKILAK--ATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLN- 452

Query: 415 PPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGV 474
              KQ   L  ++ +G+ LL  IN I+ LS++E+G+  L+    S+  L    +  +   
Sbjct: 453 --GKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQF 510

Query: 475 AIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRI------W 528
           AI++QINL  +   N+       D+ RL Q+L  LLNNA+KFTP  G V+++        
Sbjct: 511 AIQKQINLSSEIIPNL--PDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQG 568

Query: 529 KESNQA----IFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVEL 584
           KE++Q+     F V DTGIGI   +L  +FE F     +    Y+  G+GL+L K++VEL
Sbjct: 569 KENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVEL 628

Query: 585 HGGYIEVESSPGQGTIFTTVIP---QQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEI 641
           HGG + V S   +G+ F   IP   Q    P  +GQ+ +  +   P    + +I ++   
Sbjct: 629 HGGSVTVTSKLNEGSRFKITIPCVFQDKDGPRHRGQLVEVTNHGSPTPIIITLISKNSAY 688

Query: 642 ATLICELLTVANYQVIWL 659
           AT +        YQ+ WL
Sbjct: 689 ATTLSSYFRAKGYQMQWL 706


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  147 bits (371), Expect = 1e-37
 Identities = 138/477 (28%), Positives = 218/477 (45%), Gaps = 42/477 (8%)

Query: 266 VAVSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKN 325
           V V D+E     +      LQ   V++ LV P++ + Q+ G +     H    W   E N
Sbjct: 68  VLVRDVEQMPPEAEMDKVSLQFDLVKSILVVPMVKDAQVLGYISMVHLHDNYGWNPEELN 127

Query: 326 FLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINN 385
               +G+ LA+A            Q  +  +  + + KE      AA AAN  K++F+ +
Sbjct: 128 LAKLVGQFLAIA------------QARHQAETTLTQAKE------AADAANRAKTEFLAS 169

Query: 386 ISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQ 445
           ISHELRTPL +IIG S  L R      SL P +    ++N   +G+ LL+ IN I+++S+
Sbjct: 170 ISHELRTPLNAIIGFSQLLHR----DPSLAPHRPTLDIIN--RSGEHLLELINDILEMSK 223

Query: 446 LESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQI 505
           +E+G+T LN +    H L   +       A ++Q+ L+++    V  +    D  +L Q+
Sbjct: 224 IEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEV-PEWIKTDGGKLRQV 282

Query: 506 LTQLLNNALKFTPAEGTVILRI------WKESNQAI-----FQVEDTGIGINEQQLPVLF 554
           L  LL NA+KFT A+G V L++        +  Q       F V DTG GI   ++  LF
Sbjct: 283 LINLLANAIKFT-AQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDELF 341

Query: 555 EAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNF--PP 612
             F        S  +  G+GL ++++ V+L GG I+V S   QG+ F   IP Q    P 
Sbjct: 342 VPFAQTETGLKS-CQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAAPK 400

Query: 613 TTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELL 672
            T       L     +N  V+V++   E   L+ +LLT   + V    +   A+   E  
Sbjct: 401 PTPETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESW 460

Query: 673 QPGLIIVDGDF--VDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDY 727
            P +I++D     +D    T+ IK S +     +  L+ S    E   +   G DD+
Sbjct: 461 HPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDF 517


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  136 bits (342), Expect = 3e-34
 Identities = 85/244 (34%), Positives = 130/244 (53%), Gaps = 7/244 (2%)

Query: 368  TLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQ 427
            +L+  +  N  KSQF++ +SHE RTPLTSIIG    L ++FD    L   K+Q Y+ NIQ
Sbjct: 929  SLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDR---LSTEKKQQYINNIQ 985

Query: 428  ENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQ 487
             + ++L   I+ ++ +S+ ++ +  +   + +L  LA  +I +     +  + N EL+Y 
Sbjct: 986  NSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLANDLIEN-FSCGLGSEHNFELNYH 1044

Query: 488  INVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINE 547
            +   +     D   L  IL  +L+NA+K++    T+ L I K+    +FQV D GIGI  
Sbjct: 1045 LKPDEHSL-VDVRLLRHILENILSNAIKYSAPGSTITLDISKDEEHLLFQVRDEGIGIPL 1103

Query: 548  QQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQ 607
            Q    LFEAF  A  S        G+GL++ K+ VE  GG IEV S PG+GT     +P 
Sbjct: 1104 QDQEKLFEAFHRA--SNVGDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPL 1161

Query: 608  QNFP 611
               P
Sbjct: 1162 NPAP 1165


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  135 bits (340), Expect = 4e-34
 Identities = 93/264 (35%), Positives = 153/264 (57%), Gaps = 17/264 (6%)

Query: 355 EKRVIERTKELRDTLMA-------AQAANLLKSQFINNISHELRTPLTSIIGLSATLLRW 407
           E++V +RT+EL +T+ A       A+AAN  KS F+ N+SHELRTPL +IIG S  L+  
Sbjct: 407 EEKVQQRTEELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLI-- 464

Query: 408 FDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTV 467
            +    L   +    L  I  +GK LL  IN ++ +S++E+G+  L  ++F+L  L   +
Sbjct: 465 -EEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGI 523

Query: 468 IHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTV--IL 525
           + ++    + +  N +L+ +I++  ++   D  +L Q +  LL+NA KFT  +G +  I+
Sbjct: 524 LDTIS--PLLKNNNNKLEVEISLESEEVYGDLIKLRQGILNLLSNASKFTK-DGIISFIV 580

Query: 526 RIWK--ESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVE 583
             +K  E +   FQV+DTGIG+ E+Q+  LF+ F  A  S T  Y   G+GLA+T++  +
Sbjct: 581 EEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQ 640

Query: 584 LHGGYIEVESSPGQGTIFTTVIPQ 607
           + GG I + S  G G+ FT  +P+
Sbjct: 641 MMGGDIYLTSEIGVGSSFTIKLPK 664


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  134 bits (336), Expect = 1e-33
 Identities = 95/261 (36%), Positives = 147/261 (56%), Gaps = 24/261 (9%)

Query: 355 EKRVIERTKELRDTL-------MAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRW 407
           E+R+ ERT+EL ++        + A+ A   KS+F+ N+SHE+RTP+ +IIG+S  +L+ 
Sbjct: 427 EQRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQ- 485

Query: 408 FDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTV 467
                +   ++Q+ YL  +Q  G+ LL  IN+I+  S++E+G+  L  + FS+  +    
Sbjct: 486 -----TDLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGN- 539

Query: 468 IHSLLGVAIKQQ---INLELDYQINVGQDQFCADQERLDQILTQLLNNALKFT-PAEGTV 523
           +HS+LG+  + +   +N  LD +I         D+ RL QIL  L NNA+KFT   E T+
Sbjct: 540 LHSILGIQAEAKGLTLNFHLDPRI---PPILVGDRLRLSQILINLGNNAVKFTNQGEITI 596

Query: 524 ---ILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQ 580
              +L+   E  +  F V DTGIG+   Q   LF+ F     S +  Y   G+GLA++K 
Sbjct: 597 RGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKS 656

Query: 581 LVELHGGYIEVESSPGQGTIF 601
           L EL GG I +ES  GQG+ F
Sbjct: 657 LTELMGGDIWLESVVGQGSTF 677


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  130 bits (327), Expect = 1e-32
 Identities = 119/415 (28%), Positives = 199/415 (47%), Gaps = 38/415 (9%)

Query: 343 LYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLL------KSQFINNISHELRTPLTS 396
           LY + + ++   EK +IE  + L+  +   +A  +       KS F+ N+SHELR+PL +
Sbjct: 323 LYQQRELERAQREKILIEYNESLQKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNA 382

Query: 397 IIGLSATLLRWFDHPASLPPAKQQYYLLN-IQENGKKLLDQINSIIQLSQLESGQTALNC 455
           IIG S  +LR  + P       +QY     IQ +G+ LL+ IN+I+  S++E+G+T LN 
Sbjct: 383 IIGFSQLMLRTKNLP------MEQYENAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNR 436

Query: 456 QSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALK 515
            +F L+ L   +   L   A  + I L      ++ +  +  D+ +L QIL  LL+NA+K
Sbjct: 437 HNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVY-GDEIKLRQILLNLLSNAIK 495

Query: 516 FTPAEGTVILRIWKESNQ-----------------AIFQVEDTGIGINEQQLPVLFEAFK 558
           FT     V+   ++ + Q                   F ++DTG GI+E +L  LFEAF 
Sbjct: 496 FTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFS 555

Query: 559 VAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTI--FTTVIPQQNFPPTTKG 616
              +S  +  E  G+GLA+T+Q ++L GG I V S   QGT   F+ ++       + + 
Sbjct: 556 QT-ESGRNAQEGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFSILVDLGEITLSREP 614

Query: 617 QVQDKLDAAMPFNS--SVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQP 674
               K+ A  P      ++V++       L+ +LL    +++    +   A+   E  +P
Sbjct: 615 NSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEP 674

Query: 675 GLIIVD--GDFVDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDY 727
            LI +D     +D  E T+ IK   + +   V  L+ S+   E   +   G DD+
Sbjct: 675 HLIFMDMRMPVMDGYEATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDF 729


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  129 bits (324), Expect = 3e-32
 Identities = 107/380 (28%), Positives = 185/380 (48%), Gaps = 30/380 (7%)

Query: 359 IERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAK 418
           ++R KEL      A+ A+ +K+ F+ N+SHE+RTP+ ++IG++   L+       L P +
Sbjct: 513 MKRAKEL------AEEASRIKADFLANMSHEIRTPMNAVIGMTHLALK-----TDLTP-R 560

Query: 419 QQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQ 478
           Q+ YL  I+ +G+ LL  IN I+  S++E+G+  +    F L  +   V   +   A  +
Sbjct: 561 QREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNK 620

Query: 479 QINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTP-AEGTVILRIWKESNQAI-- 535
            + L  D   N+ +  F  D  RL QIL    NNA+KFT   + T+++R+ +  +Q +  
Sbjct: 621 GLELLFDIDRNLPR-HFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVL 679

Query: 536 -FQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESS 594
              V+DTGIGI  + +  LF +F+ A  S T  +   G+GLA+ K++ EL GG + VES 
Sbjct: 680 YLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESE 739

Query: 595 PGQGTIFTTVIPQQNFPPTTKGQVQDKLDAAMPFNSSVIVIEQDEEIATLIC-ELLTVAN 653
            GQG+ F   +  Q         +  +L  +       +++  D + A L+  +LL    
Sbjct: 740 YGQGSTFWAKVCLQK-----SNVIPHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMK 794

Query: 654 YQVIWLIDTTNALQQV-----ELLQPGLIIVDGDF--VDVTEVTRGIKKSRRISKVTVFL 706
           + V  +     AL  +     E     ++ +D     +D  EV R +K      + ++F+
Sbjct: 795 FVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFI 854

Query: 707 LSESLSSAEWQALSQKGIDD 726
           ++       +      GIDD
Sbjct: 855 VTAYGREELFVKAKSLGIDD 874


>SYNE-PCC-01-002220 slr1212
          Length = 844

 Score =  126 bits (316), Expect = 3e-31
 Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 60/399 (15%)

Query: 155 QASQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQ 214
           Q  +  LL ++  +IRQSLDL  I N  V  +++FL  DR+VI+QF              
Sbjct: 456 QGRRESLLREITQRIRQSLDLPTIFNTVVQEIRQFLEADRVVIFQF-------------- 501

Query: 215 IPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENH 274
             +P      G +  E+  +P    ++    E  CFS   +Y Q+Y +G +  + DI   
Sbjct: 502 --SPDSDFSVGNIVAESVLAP-FKPIINSAIEETCFSN--NYAQRYQQGRIQVIEDIHQS 556

Query: 275 YSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFLGQIGEHL 334
           +    C +  L R QVRA LV P+I +  LWGLL  HQC   R W  +E + L QI    
Sbjct: 557 HLRQ-CHIDFLARLQVRANLVLPLINDAILWGLLCIHQCDSSRVWEQTEIDLLKQITNQF 615

Query: 335 AVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPL 394
            +AI Q+ LY + Q++  +  +  ++ T EL             K   +  I H ++  L
Sbjct: 616 EIAIQQATLYEQAQQELASKNQLFVQLTNELEQ-----------KKVLLKEIHHRVKNNL 664

Query: 395 TSIIGLSATLLRWFDHPASLPPAKQQYY-----LLNIQENGKKLLDQINSIIQLSQLESG 449
              I  S   L++     ++    ++Y      +  I E   +  D  N  I  SQ    
Sbjct: 665 Q--IMSSLLYLQFSKASPAIQQLSEEYQNRIQSMALIHEQLYRSEDLAN--IDFSQYLKN 720

Query: 450 QTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQL 509
            T   CQS+  +T       S+    + +Q+ + L+  I +G             I+ +L
Sbjct: 721 LTHNICQSYGCNT------DSIKIKLLVEQVKVPLEQSIPLG------------LIIQEL 762

Query: 510 LNNALK--FTPAEGTVILRIWKESNQAIFQVEDTGIGIN 546
           ++NALK  F   EG + ++    ++    QV D G+GI+
Sbjct: 763 VSNALKHAFPTTEGEISIKFTSMNSHYSLQVWDNGVGIS 801


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  121 bits (303), Expect = 9e-30
 Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 383 INNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQ 442
           +++I HE RTPLT+IIG  A +LR  D        KQ  Y+     + + LL  +N  + 
Sbjct: 190 LSHIHHEFRTPLTAIIGF-ARMLR--DELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLD 246

Query: 443 LSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERL 502
           LS++++    L  +  ++  L   VI  +   A ++Q+ L L   I+ G D    DQ R 
Sbjct: 247 LSKIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLT--IDDGVDFCYVDQRRW 304

Query: 503 DQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGD 562
            QIL  LL+N +KFTP +G+V L +       IF V DTGIGI+ +    LF+ FK    
Sbjct: 305 KQILINLLSNGVKFTP-KGSVTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363

Query: 563 SYTSFYETG-GVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIP 606
              SF E G G+GLAL+++L +LHGG I++ S+PG G+ F+ ++P
Sbjct: 364 P-PSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  118 bits (295), Expect = 7e-29
 Identities = 88/259 (33%), Positives = 134/259 (51%), Gaps = 19/259 (7%)

Query: 347 VQKQKNNFEKRV----IERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSA 402
           +Q Q    E+R+     E+ +EL     AA+AAN  KS+F+  +SHE+RTP+ +IIG++ 
Sbjct: 285 IQGQSLEMERRMRQQLAEQNQELVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTG 344

Query: 403 TLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHT 462
            LL   D   +    +Q+Y+   I+ +G+ LL  IN I+  S++E+G+  L    F L  
Sbjct: 345 LLL---DTDLT---TQQKYFAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQ 398

Query: 463 LAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGT 522
             +  +  ++  A ++ + L   +   +       D  RL QIL  LL+NA+KFT A G 
Sbjct: 399 CLEEALDVVVPSARQKSLTLIRRFLTPI-PPNLQGDVTRLRQILVNLLSNAVKFTEA-GQ 456

Query: 523 VILRI-------WKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGL 575
           V + +        K   Q  F V+DTGIGI   Q   LF+AF     S T  +   G+GL
Sbjct: 457 VKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGL 516

Query: 576 ALTKQLVELHGGYIEVESS 594
           A+  +L  L GG I  ES+
Sbjct: 517 AICVRLTALMGGTIWAESN 535


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  115 bits (287), Expect = 6e-28
 Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 41/292 (14%)

Query: 347 VQKQKNNFEKRVIERTK---------------------ELRDTLMAAQAANLLKSQFINN 385
           +++ K+N E RV ERT                      +LR+   +A+ AN +KS+F+ N
Sbjct: 547 IKQAKDNLEMRVAERTHTLIVINKQLAGEIEERQRIEIKLREAKESAELANRVKSEFLAN 606

Query: 386 ISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQ 445
           ISHE+RTP+ +I+G    LL+       L  ++ + YL  I  + K LL  I+ I+ +S+
Sbjct: 607 ISHEIRTPMNAILGFCDLLLQ-----KDLSLSQTKKYLNAIGSSSKILLALIDDILDISK 661

Query: 446 LESGQTALNCQSFSLHTLAQTV--IHSLLGVAIKQQINLELDYQINVGQDQFCADQERLD 503
           +E+G+  ++ +   L  + + +  I      +    + +++D  +N        D  RL 
Sbjct: 662 IEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLN---QAIYFDAVRLR 718

Query: 504 QILTQLLNNALKFTPAEGTVILRIWKESNQA---------IFQVEDTGIGINEQQLPVLF 554
           QIL  L+ NALKFT  EG V + I  E  Q            +V DTGIGI  +    +F
Sbjct: 719 QILFNLVGNALKFTE-EGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIF 777

Query: 555 EAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIP 606
           + F  +    T  Y   G+GL +T++L  L GG I + S  G+G+ F    P
Sbjct: 778 DVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTFILHFP 829


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score =  109 bits (272), Expect = 3e-26
 Identities = 80/263 (30%), Positives = 138/263 (52%), Gaps = 10/263 (3%)

Query: 350 QKNNFEKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFD 409
           Q++  E+R   RT+E+R  L   +  + LK++F +  SHE RTPL++   L+A  L    
Sbjct: 43  QRDVTERR---RTEEVRLALEREKELSRLKTRFFSMASHEFRTPLST--ALAAAQLLENS 97

Query: 410 HPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIH 469
             A L P K+   L  IQ + K ++  ++ I+ +++ E+G+   N     L  L Q  I 
Sbjct: 98  EVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIE 157

Query: 470 SLLGVAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWK 529
            +  +++  Q     D+  +    +   D+  +  IL+ LL+NA+K++P  G + + +  
Sbjct: 158 EIQ-LSVSDQYYF--DFICSAQDTKALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSL 214

Query: 530 ESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYI 589
           +S Q IF+V D GIGI+ +    +FE F   G +  +   T G+GL + K+ V+LH G I
Sbjct: 215 DSEQIIFEVTDQGIGISPEDQKQIFEPFH-RGKNVRNITGT-GLGLMVAKKCVDLHSGSI 272

Query: 590 EVESSPGQGTIFTTVIPQQNFPP 612
            ++S+  QGT  T  + + N  P
Sbjct: 273 LLKSAVDQGTTVTICLKRYNHLP 295


>SYNE-PCC-01-000983 sll1473
          Length = 481

 Score =  100 bits (248), Expect = 2e-23
 Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 35/226 (15%)

Query: 155 QASQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSLTPLEENQ 214
           Q  + + ++Q+   IRQSL+L  +LN  V  V+  L VDR++IY+           E   
Sbjct: 39  QTQRERFINQITQHIRQSLNLETVLNTTVAEVKTLLQVDRVLIYRIWQDGTGSAITESVN 98

Query: 215 IPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVAVSDIENH 274
              P                    ++LG    ++ F     Y Q Y KG V A++DI+  
Sbjct: 99  ANYP--------------------SILGRTFSDEVFP--VEYHQAYTKGKVRAINDIDQD 136

Query: 275 YSSSYCLVGLLQRYQVRAKLVAPIIVEGQ------------LWGLLIAHQCHHPRQWLDS 322
                CL   ++++ V++KLV PI+   +            LWGLLI HQC   R W   
Sbjct: 137 -DIEICLADFVKQFGVKSKLVVPILQHNRASSLDNESEFPYLWGLLITHQCAFTRPWQPW 195

Query: 323 EKNFLGQIGEHLAVAIVQSLLYSEVQKQKNNFEKRVIERTKELRDT 368
           E   + Q+   +A+AI QS LY ++Q+   + E RV +RT++L  T
Sbjct: 196 EVELMKQLANQVAIAIQQSELYEQLQQLNKDLENRVEKRTQQLAAT 241


>SYNE-PCC-01-000542 sll0821
          Length = 1276

 Score = 99.0 bits (245), Expect = 5e-23
 Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 25/201 (12%)

Query: 150  LQDSLQASQVK--LLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQPSL 207
            L++ LQ   VK  L+ ++  +IR SL++++IL + VT V++FL  DR+V+++F+      
Sbjct: 913  LKERLQQRNVKEKLVLKIANKIRASLNINDILYSTVTEVRQFLNTDRVVLFKFN------ 966

Query: 208  TPLEENQIPAPRPRQQYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQKYLKGAVVA 267
                          Q  G+V  E+       +++    ++ CF     Y + Y +G V A
Sbjct: 967  -------------SQWSGQVVTESHND-FCRSIINDEIDDPCFKG--HYLRLYREGRVRA 1010

Query: 268  VSDIENHYSSSYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQWLDSEKNFL 327
            VSDIE    +  C   LL+ YQV+A LV P++    LWGLLIAH+C  PR W + +   L
Sbjct: 1011 VSDIEKADLAD-CHKELLRHYQVKANLVVPVVFNENLWGLLIAHECKTPRYWQEEDLQLL 1069

Query: 328  GQIGEHLAVAIVQSLLYSEVQ 348
             ++   +A+AI Q  LY +++
Sbjct: 1070 MELATQVAIAIHQGELYEQLE 1090



 Score = 52.8 bits (125), Expect = 4e-09
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 21/213 (9%)

Query: 145 SPEPSLQDSLQASQVKLLSQVIAQIRQSLDLSEILNNAVTAVQKFLFVDRLVIYQFHYSQ 204
           +P  SL+D L+         VI +  ++L L E L   V   + FL VDR+ IY+F  S 
Sbjct: 2   NPNRSLEDFLR--------NVINKFHRALTLRETLQVIVEEARIFLGVDRVKIYKFA-SD 52

Query: 205 PSLTPLEENQIPAPRPRQ-----QYGEVTYEARRSPEIDTMLGIMTENDCFSQVFSYEQK 259
            S   L E    A  P          ++  +AR   E+     ++  +    +  S+E  
Sbjct: 53  GSGEVLAEAVNRAALPSLLGLHFPVEDIPPQARE--ELGNQRKMIAVDVAHRRKKSHE-- 108

Query: 260 YLKGAVVAVSDIENHYSS-SYCLVGLLQRYQVRAKLVAPIIVEGQLWGLLIAHQCHHPRQ 318
            L G +        HY++   C +  L    V + L  P++ + QLWG++  H    PR+
Sbjct: 109 -LSGRISPTEHSNGHYTTVDSCHIQYLLAMGVLSSLTVPVMQDQQLWGIMAVHH-SKPRR 166

Query: 319 WLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQK 351
           + + E   +  + + +++AI QS L  +V +Q+
Sbjct: 167 FTEQEWETMALLSKEVSLAITQSQLSRQVHQQQ 199


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score = 96.3 bits (238), Expect = 3e-22
 Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 35/329 (10%)

Query: 295 VAPIIVEGQLWGLLIAHQCHH-PRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQKNN 353
           + P + + Q  G L   Q    P  W    +  L ++ E    AI  + LY         
Sbjct: 127 IFPTLYQDQANGYLCLQQVGPAPGPWHPETEALLQELAEQTGTAIAHATLY--------- 177

Query: 354 FEKRVIERTKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPAS 413
                    +EL     AA+ A+ LKS+F+ + +HELRTPL  IIG    +L   D  A 
Sbjct: 178 ---------QELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLIL---DDMAD 225

Query: 414 LPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLG 473
              A++  ++    ++   LL+ IN I+ L+++E+G+  +  +      + Q   +  L 
Sbjct: 226 -SEAEKHEFVEEAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQATENFALP 284

Query: 474 VAIKQQINLELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEG----------TV 523
            A  + ++  L    N G      +Q  L Q++  ++ NA+KFT   G          TV
Sbjct: 285 QAQNKGLSFNLTAP-NQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTV 343

Query: 524 ILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVE 583
           +    ++       V DTGIG++ +Q   LF+ F     S++  Y   G+GL ++++LVE
Sbjct: 344 LWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVE 403

Query: 584 LHGGYIEVES-SPGQGTIFTTVIPQQNFP 611
             GG +   S   G G+  T  +  +  P
Sbjct: 404 TMGGKVAFFSMGEGLGSTVTFTVLLEELP 432


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 74.3 bits (181), Expect = 1e-15
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 34/304 (11%)

Query: 315 HPRQWLDSEKNFLGQIGEHLAVAIVQSLLYSEVQKQ-----KNNFEKRVIERTKELRDTL 369
           HPRQ  D  K           +  +QSL +  V+ Q     K      ++ + +EL    
Sbjct: 470 HPRQSFDLWKE----------IVRLQSLPWQSVEIQSALALKKAIVNLILRQAEELAQLA 519

Query: 370 MAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQEN 429
              + +N    +F    SH+L+ PL  +      LL      A    AK     ++    
Sbjct: 520 RNLERSNADLKKFAYIASHDLQEPLNQVSNY-VQLLEMRYSEALDEDAKD---FIDFAVT 575

Query: 430 GKKLLDQ-INSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQI 488
           G  L+   I+ I+  +++++    L        T  Q V+   L   +KQ+I  E   +I
Sbjct: 576 GVSLMQTLIDDILTYAKVDTQYAQLT------FTDVQEVVDKALA-NLKQRIE-ESGAEI 627

Query: 489 NVGQ-DQFCADQERLDQILTQLLNNALKFTPAEGTVILRIW--KESNQAIFQVEDTGIGI 545
            VG      ADQ +L Q+   L+ N +KF   +   I +IW  ++ +  +F V+D GIGI
Sbjct: 628 EVGSMPAVMADQIQLMQVFQNLIANGIKFAGDKSPKI-KIWGDRQEDAWVFAVQDNGIGI 686

Query: 546 NEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVI 605
           + Q    +F  F+         Y+  G+GLA+ K+++E H G I +ES+PG+G+ F   I
Sbjct: 687 DPQFFERIFVIFQRLHTR--DEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744

Query: 606 PQQN 609
           P  N
Sbjct: 745 PIGN 748


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,606
Number of Sequences: 78
Number of extensions: 3121
Number of successful extensions: 94
Number of sequences better than 1.0e-05: 18
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 28
length of query: 750
length of database: 48,235
effective HSP length: 70
effective length of query: 680
effective length of database: 42,775
effective search space: 29087000
effective search space used: 29087000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002788 slr1982 
         (123 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002788 slr1982                                            241   5e-67
SYNE-PCC-01-002879 slr2104                                             97   1e-23
SYNE-PCC-01-000800 sll1228                                             92   8e-22
SYNE-PCC-01-002873 slr2098                                             89   4e-21
SYNE-PCC-01-001132 sll1672                                             88   1e-20
SYNE-PCC-01-001461 slr0115                                             86   3e-20
SYNE-PCC-01-001306 sll1905                                             81   1e-18
SYNE-PCC-01-002617 slr1759                                             79   4e-18
SYNE-PCC-01-002033 slr0947                                             75   1e-16
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    73   3e-16
SYNE-PCC-01-002672 slr1837                                             72   6e-16
SYNE-PCC-01-002086 slr1042                                             71   1e-15
SYNE-PCC-01-001133 sll1673                                             71   1e-15
SYNE-PCC-01-000414 sll0649                                             67   2e-14
SYNE-PCC-01-002731 slr1909                                             65   8e-14
SYNE-PCC-01-002618 slr1760                                             63   3e-13
SYNE-PCC-01-001160 sll1708                                             63   4e-13
SYNE-PCC-01-002486 slr1584                                             62   7e-13
SYNE-PCC-01-001437 slr0081                                             62   9e-13
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   61   1e-12
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    60   3e-12
SYNE-PCC-01-002489 slr1588                                             59   7e-12
SYNE-PCC-01-000242 sll0396                                             59   7e-12
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    52   5e-10
SYNE-PCC-01-002635 slr1783                                             52   7e-10
SYNE-PCC-01-000523 sll0797                                             51   1e-09
SYNE-PCC-01-002221 slr1213                                             50   2e-09
SYNE-PCC-01-001075 sll1592                                             50   3e-09
SYNE-PCC-01-000518 sll0789                                             47   2e-08
SYNE-PCC-01-000608 sll0921                                             46   5e-08
SYNE-PCC-01-001575 slr0312                                             43   4e-07
SYNE-PCC-01-001517 slr0222                                             43   4e-07
SYNE-PCC-01-000877 sll1330                                             42   9e-07
SYNE-PCC-01-002778 slr1969                                             41   1e-06

>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score =  241 bits (616), Expect = 5e-67
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPI 60
           MESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPI
Sbjct: 1   MESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPI 60

Query: 61  IDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120
           IDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA
Sbjct: 61  IDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120

Query: 121 LIN 123
           LIN
Sbjct: 121 LIN 123


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 97.4 bits (241), Expect = 1e-23
 Identities = 49/114 (42%), Positives = 78/114 (68%)

Query: 5   AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64
           A +LLVEDNE+NR+     L  KG  V +A +G++A+T+  S +   ILMD+ +P+++G+
Sbjct: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777

Query: 65  TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118
            AT+ I+      ++PIIA+TA+AMA D+E+A+ AG +D+ TKPI+   L Q +
Sbjct: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score = 91.7 bits (226), Expect = 8e-22
 Identities = 47/110 (42%), Positives = 70/110 (63%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           KVL+V+D   +R +L + L   G+ V  A +GE A+ +  S  PQ+ILMDM +P++DG +
Sbjct: 419 KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLL 115
            T++IK  P G H  IIALTA A   +R   ++AGCDD+ +KP   + L+
Sbjct: 479 TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELI 528


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 89.4 bits (220), Expect = 4e-21
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query: 5    AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64
            A++LLVEDNE+N+++ +  L   G+ V +A +G  A+    + +  L+LMDM +P +DG 
Sbjct: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984

Query: 65   TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118
             AT  I+ +P  A +PI+A+TA+ M  DRER + AG +D+  KPIE + L  K+
Sbjct: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score = 87.8 bits (216), Expect = 1e-20
 Identities = 41/103 (39%), Positives = 66/103 (64%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           K+L+V+D  +NR +L + L   G+E+  A +G++A+ +  S  P LI MDM +P++DG+ 
Sbjct: 631 KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108
           ATK IKG   G    ++ALTA  +  ++   ++AGCDD+  KP
Sbjct: 691 ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKP 733


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 86.3 bits (212), Expect = 3e-20
 Identities = 40/119 (33%), Positives = 73/119 (61%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           M ++L+++D+    D++S  L   GY+V  AVDG +   +A+   P LI++D+ LP +DG
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
           +T  ++++     A IP++ LTA     D+ +   +G DDY TKP +++ +L ++ AL+
Sbjct: 61  FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score = 80.9 bits (198), Expect = 1e-18
 Identities = 42/114 (36%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66
           +LL EDN +N+ +    L + GY V +  +G++A++        ++LMD+ +P +DG TA
Sbjct: 742 ILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLTA 801

Query: 67  TKQIKGHPDGAHIP-IIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119
           T+ I+     +  P IIA+TA++M  DRER +A+G +DY +KPI ++ L Q ++
Sbjct: 802 TEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855



 Score = 66.2 bits (160), Expect = 3e-14
 Identities = 37/113 (32%), Positives = 57/113 (50%)

Query: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66
           +L+V+D + N  ++S  L  +GY       G +A+       P LIL+D+ +P +DG   
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 67  TKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119
             ++K  P    IP+I LTA     D  +A A G  DY TKP     LL +++
Sbjct: 80  CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVK 132


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score = 79.3 bits (194), Expect = 4e-18
 Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 4/126 (3%)

Query: 1    MESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPI 60
            ++   ++LL EDN +N+ +  + L   GY V IA +G++ +     +   L+LMDM +P+
Sbjct: 1186 LQPALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPV 1245

Query: 61   IDGWTATKQIKGH-PDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPI---EIKRLLQ 116
            +DG TA + I+   P      I+A+TA+AM  DR+  + AG D Y +KPI   +++++LQ
Sbjct: 1246 MDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQ 1305

Query: 117  KMEALI 122
               ALI
Sbjct: 1306 DTSALI 1311



 Score = 41.2 bits (95), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 6    KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQL--ILMDMSLPIIDG 63
            +VL+V+DNE NR +L  +    G        GE A+    +  P L   ++D+ +P +DG
Sbjct: 1035 QVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDW-FARCPDLDAAILDLQMPNMDG 1093

Query: 64   WTATKQIKGHPDGAHIPIIALTAHAMASDRERAI 97
             T    ++    G  +PII L++  +A   E ++
Sbjct: 1094 ITLAHHLRQFAQGKDLPIILLSSGLVAGADELSV 1127


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 74.7 bits (182), Expect = 1e-16
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 9   LVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTATK 68
           +V+D    R +L  RL   GYEVV A DGE+A+       P L+++D+ +P +DG+   +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 69  QIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
           +++   D   IPII LTA    +DR   +  G DDY  KP   K L  ++ +++
Sbjct: 61  ELRKESD---IPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 73.2 bits (178), Expect = 3e-16
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           K+L+VED    R+M++  L +K Y+V+ A D + A+   I E+P+LIL+D  LP   G  
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINK-IKENPKLILLDWMLPGRSGIQ 62

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
             + IK     A IPII LTA +   D    + AG DDY TKP   + LL ++EA+
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAV 118


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 72.0 bits (175), Expect = 6e-16
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           MA +LLV+D     + LS+ L  +G+ + +A  G+  + MAI+    L+++D  LP + G
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSG 60

Query: 64  WTATKQIK--GHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
               +QI+  GH      P++ LTA     DR   + AG DDY  KP E++ LL ++ AL
Sbjct: 61  LEICRQIRILGH----STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRAL 116

Query: 122 I 122
           +
Sbjct: 117 L 117


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 71.2 bits (173), Expect = 1e-15
 Identities = 38/119 (31%), Positives = 67/119 (56%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           M  VLLVED+   R+M+S  L   G++V IA DG +A+    + SP L+++D+ +P ++G
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNG 86

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
           +   ++IK  P   ++P+I  ++     DR   +  G D Y  KP +   L+  ++ L+
Sbjct: 87  YEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 70.9 bits (172), Expect = 1e-15
 Identities = 40/118 (33%), Positives = 63/118 (53%)

Query: 2   ESMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPII 61
           E    +LLV+D   N  +LS  LI  GY V     G+ A+     + P LIL+D+ +P +
Sbjct: 6   EKKGNILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDM 65

Query: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKME 119
           DG+   + IK   +   IPII ++A     D+ +A   G  DY TKP +I+ ++ ++E
Sbjct: 66  DGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 67.4 bits (163), Expect = 2e-14
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query: 3   SMAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIID 62
           +M  +L+VED++    ++   L R+ +  ++  DGE  + +   + P LI++D+ LP +D
Sbjct: 10  AMPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLD 69

Query: 63  GWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
           G     +I+  P      I+ LTA     DR   ++ G DDY  KP   + L+ ++ AL+
Sbjct: 70  GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 65.1 bits (157), Expect = 8e-14
 Identities = 32/116 (27%), Positives = 68/116 (58%)

Query: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66
           +LLV+D+     ++   L  +GY+V  A +G +A+ +  +  P +I+ D+ +P +DG+  
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 67  TKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
            +Q++ +PD + IP++ L+A   + +R + +  G D Y  KP E + L  ++++ +
Sbjct: 70  IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCL 125


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 63.2 bits (152), Expect = 3e-13
 Identities = 35/118 (29%), Positives = 65/118 (55%)

Query: 5   AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64
           AK+L+V+D+   R  L   L ++G+ V +A +GE+A+T      P+++L+D  +P++DG+
Sbjct: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71

Query: 65  TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
              + +          ++ +T     +  +RA  AG  DY TKPI    L Q+++ L+
Sbjct: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLL 129


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 62.8 bits (151), Expect = 4e-13
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)

Query: 6   KVLLVEDNEMNRDMLSRRL-IRKGYEVVIAVD-GEQAVTMAISESPQLILMDMSLPIIDG 63
           K+L+VED+ + +  L + L   + +E++  VD G  AV  A   +P LI+MD+ LP +DG
Sbjct: 18  KILIVEDDPLMQLGLEQALGAHERFEIIGRVDNGYGAVQQAAVLNPDLIVMDIGLPGLDG 77

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120
             ATKQIK       I I+ LT+H + ++   A+++G D Y  K   ++RL+  + A
Sbjct: 78  IEATKQIK--QTSPQIHIVVLTSHTLPNEIIAALSSGADAYCVKGATLERLILAIAA 132


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 62.0 bits (149), Expect = 7e-13
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           ++LLVED+    + L+  L  + Y V IA D   A   A      L+++D+ LP +DG T
Sbjct: 2   RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGIT 61

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
             ++ + H     +PI+ +TA    +D+   + AG DDY  KP+++  L  ++ AL+
Sbjct: 62  LCQKWRSH--SYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALL 116


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 61.6 bits (148), Expect = 9e-13
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMA--ISESP-----QLILMDMSL 58
           ++L+VED    R+ +   L  +GYEV    DG  A+ +    SE P      LI++D+ L
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 59  PIIDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118
           P ++G    + ++    G + PI+ ++A     ++   +  G DDY TKP  +K L+ + 
Sbjct: 92  PQVNGLDVCRSLRF--GGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 119 EALI 122
            A+I
Sbjct: 150 RAMI 153


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 60.8 bits (146), Expect = 1e-12
 Identities = 36/119 (30%), Positives = 72/119 (60%), Gaps = 4/119 (3%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           M+K+LLV+D+    ++LS  L  +G++V  A +G +A+   ++ES +L+L+D+ +P ++G
Sbjct: 1   MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEAL-QKLNESYKLVLLDVMMPKLNG 59

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
               K+I+     +++P++ LTA     DR   +  G DD   KP   + L+ +++A++
Sbjct: 60  IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL 115


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-12
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           ++LL+ED+ +  + L   L + G+ V    DG+  +    S     +++D++LP +DG  
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 66  ATKQIKG-HPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
             +Q +  H D   +P++ LTA     +R + + +G DDY  KP  +  +  +++ALI
Sbjct: 62  VLQQWRSNHQD---VPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALI 116


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 58.5 bits (140), Expect = 7e-12
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTM--AISESPQLILMDMSLPII 61
           M+ +L+VED  + R+++   L  + Y+++ A +G  A+ +  ++   P LI+ D+ +P +
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120
           DG      ++ +   A IP I LTA     D  + + +G DDY  KP + + LL  + +
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNS 119


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 58.5 bits (140), Expect = 7e-12
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           +VL+VE+ E     +   L  +GY+V +A DG +  T A    P LI+++ +LP + G  
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKP 108
             ++++    G+ IPII +TA     +R   + AG DDY  KP
Sbjct: 64  LCRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKP 104


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-10
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
           K+L+VED  + R+ L      +GY+V  A +G +   +  + +  L++MD++LP  +G  
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 66  ATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALIN 123
             ++++   +   +P+I LT      D+   +  G DDY TKP   + L  +   L++
Sbjct: 65  LARELR---EELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLH 119


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 52.0 bits (123), Expect = 7e-10
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 1   MESMAKVLLVEDNEMNRDMLSRRLIRKG-YEVVIAVDGEQAVTMAISESPQLILMDMSLP 59
           M     +LLV+D    R+ +   L   G ++V +A +  +A        P L++ D+ +P
Sbjct: 52  MAEPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMP 111

Query: 60  IIDGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIE-------IK 112
            +DG+   ++++       +P++ LTA  M  DR +    GCD + +KP +       ++
Sbjct: 112 QVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVR 171

Query: 113 RLLQKMEA 120
            LL + +A
Sbjct: 172 NLLARQQA 179


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-09
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 4/118 (3%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQ--LILMDMSLPIIDG 63
           ++LLVED       + + L+ + Y V    DG QA     ++  +  L ++D  LP + G
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
               ++++    G  +P++ LTA     +R   + AG DDY TKP  +  LL ++ AL
Sbjct: 62  LELCQKLR--TQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRAL 117


>SYNE-PCC-01-002221 slr1213
          Length = 241

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 4   MAKVLLVEDNEMNRDMLSRRLIRKGYEV-VIAVDGEQAVTMAISESPQLILMDMSLP-II 61
           + K+L+VED  +    +++ L   GYE+ VIA DG  A+       P L+L+D+ +   I
Sbjct: 2   VTKILIVEDERLVAQHIAQLLKSDGYEICVIASDGATALKKIAEFYPDLVLLDIRIKGEI 61

Query: 62  DGWTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
           DG    ++IK       IPI+ LTA +     ERA       Y  KP   ++LL  +   
Sbjct: 62  DGIEVAERIKSLYS---IPIVYLTAFSDGETLERAQKTNPQGYVIKPFRREQLLSTVAIA 118

Query: 122 I 122
           I
Sbjct: 119 I 119


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 50.1 bits (118), Expect = 3e-09
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRK-GYEVV-IAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           ++LLVED+E+ R  L  RL ++ G +V   A DGE A+     +   ++++D+ LP I G
Sbjct: 9   RILLVEDDELFRLGLVTRLSQEPGLDVAGEAEDGETAIAYVNQQLFDVVILDVGLPGIGG 68

Query: 64  WTATKQIKG-HPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLL 115
             A  QIK  HP    +P++ LT+H+  +   R I A    Y  K +  + L+
Sbjct: 69  IEACHQIKKIHP---QLPVLILTSHSQPALINRLIEAQAQGYCVKGVAAETLV 118


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 47.4 bits (111), Expect = 2e-08
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISE--SPQLILMDMSLPIIDG 63
           ++LLVED       L + L R+ Y V    DG  A +       +  L + D  +P + G
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
               ++++G      +PI+ LTA    +DR   + AG DDY  KP  +  LL ++ +L
Sbjct: 62  LELCQKLRGQRSS--LPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSL 117


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 45.8 bits (107), Expect = 5e-08
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 6   KVLLVEDNEMNRDMLSRRL-IRKGYEVV-IAVDGEQAVTMAISESPQLILMDMSLPIIDG 63
           ++ L+ED ++ R  L   L +   +E V  A +G   + M     P ++++D+ LP ++G
Sbjct: 5   RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEA 120
              T+Q+K  P      ++ LT +        A +AG D Y  K    + L++ ++A
Sbjct: 65  IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQA 121


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 42.7 bits (99), Expect = 4e-07
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 6   KVLLVEDNEMNRDMLSRRLIRKGYEVVIAV--DGEQAVTMAISESPQLILMDMSLPIIDG 63
           +VL+ +D+ + R  L+  + R     VIA   +GEQA+ +     P + LMD+ +P ++G
Sbjct: 8   RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67

Query: 64  WTATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
             A   I      A   II LT +    D  R + AG   Y  K  E   LL  +  +
Sbjct: 68  VAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTV 123


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 42.7 bits (99), Expect = 4e-07
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query: 6  KVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWT 65
          KVLLV+D   N   LSR L     E++ A  G++A+  A +    L+++   +  +DG  
Sbjct: 8  KVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTEFALMILAQEMSELDGLN 67

Query: 66 ATKQIKGHPDGAHIPIIAL 84
            K ++  P     PII L
Sbjct: 68 TAKILRSFPLAEQTPIIFL 86


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 41.6 bits (96), Expect = 9e-07
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 7   VLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGWTA 66
           + +VE N   R +LS  L + GY V       QA     ++ P L ++D  L   DG   
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAFNNQLPTLAVIDSDLTDGDGIEL 65

Query: 67  TKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEALI 122
            + +          I  L+A     D    + AG DDY TKP  ++  L ++E LI
Sbjct: 66  CRWLYQQHQSM---IFILSAKDTEKDIVHGLKAGADDYLTKPFGMQEFLARIECLI 118


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score = 41.2 bits (95), Expect = 1e-06
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 5   AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64
           + V+++E +E    ++   L    Y+V+  +D   A+       P LI++D     +D  
Sbjct: 630 SSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVDGDF--VDVT 687

Query: 65  TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKMEAL 121
             T+ IK     + + +  L+    +++ +     G DDY  KP++ + LLQ+++++
Sbjct: 688 EVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQRVQSI 744


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,626
Number of Sequences: 78
Number of extensions: 400
Number of successful extensions: 60
Number of sequences better than 1.0e-05: 34
Number of HSP's better than  0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 37
length of query: 123
length of database: 48,235
effective HSP length: 54
effective length of query: 69
effective length of database: 44,023
effective search space:  3037587
effective search space used:  3037587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 88 (38.5 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002873 slr2098 
         (1261 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002873 slr2098                                           2350   0.0  
SYNE-PCC-01-002617 slr1759                                            351   9e-99
SYNE-PCC-01-001306 sll1905                                            298   5e-83
SYNE-PCC-01-002879 slr2104                                            296   2e-82
SYNE-PCC-01-001132 sll1672                                            235   7e-64
SYNE-PCC-01-000800 sll1228                                            200   3e-53
SYNE-PCC-01-000891 sll1353                                            187   1e-49
SYNE-PCC-01-000295 sll0474                                            169   6e-44
SYNE-PCC-01-001280 sll1871                                            164   1e-42
SYNE-PCC-01-001294 sll1888                                            145   8e-37
SYNE-PCC-01-002778 slr1969                                            138   9e-35
SYNE-PCC-01-001517 slr0222                                            137   2e-34
SYNE-PCC-01-001509 slr0210                                            130   3e-32
SYNE-PCC-01-000985 sll1475                                             93   6e-21
SYNE-PCC-01-002788 slr1982                                             89   6e-20
SYNE-PCC-01-001690 slr0473                                             85   2e-18
SYNE-PCC-01-002635 slr1783                                             77   3e-16
SYNE-PCC-01-002086 slr1042                                             74   2e-15
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   70   3e-14
SYNE-PCC-01-002731 slr1909                                             68   2e-13
SYNE-PCC-01-002486 slr1584                                             67   3e-13
SYNE-PCC-01-002489 slr1588                                             66   8e-13
SYNE-PCC-01-000523 sll0797                                             64   3e-12
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    63   5e-12
SYNE-PCC-01-000414 sll0649                                             62   8e-12
SYNE-PCC-01-001133 sll1673                                             62   1e-11
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    58   2e-10
SYNE-PCC-01-001461 slr0115                                             55   1e-09
SYNE-PCC-01-002618 slr1760                                             55   1e-09
SYNE-PCC-01-001575 slr0312                                             55   1e-09
SYNE-PCC-01-002672 slr1837                                             54   2e-09
SYNE-PCC-01-001437 slr0081                                             54   4e-09
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    53   5e-09
SYNE-PCC-01-002033 slr0947                                             53   7e-09
SYNE-PCC-01-000518 sll0789                                             50   4e-08
SYNE-PCC-01-000242 sll0396                                             47   3e-07
SYNE-PCC-01-000608 sll0921                                             47   5e-07
SYNE-PCC-01-000877 sll1330                                             42   9e-06

>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score = 2350 bits (6090), Expect = 0.0
 Identities = 1204/1261 (95%), Positives = 1204/1261 (95%)

Query: 1    MFWQPVSPLNADQLNYQGSYDPKLVLLSVAIAIFTAYMAFLMASSALSLPGRWSRKIALA 60
            MFWQPVSPLNADQLNYQGSYDPKLVLLSVAIAIFTAYMAFLMASSALSLPGRWSRKIALA
Sbjct: 1    MFWQPVSPLNADQLNYQGSYDPKLVLLSVAIAIFTAYMAFLMASSALSLPGRWSRKIALA 60

Query: 61   LSGTVMGLGIWAMHFIGMLGFELPCPISYDPLITFISVIPAIAASIYALNFLSFQAPTAK 120
            LSGTVMGLGIWAMHFIGMLGFELPCPISYDPLITFISVIPAIAASIYALNFLSFQAPTAK
Sbjct: 61   LSGTVMGLGIWAMHFIGMLGFELPCPISYDPLITFISVIPAIAASIYALNFLSFQAPTAK 120

Query: 121  NLMVGAIWFGLGIGTMHYSGMAALELHGNIYYELPLFVLSLVIAVMLAFVALLFRFHSAK 180
            NLMVGAIWFGLGIGTMHYSGMAALELHGNIYYELPLFVLSLVIAVMLAFVALLFRFHSAK
Sbjct: 121  NLMVGAIWFGLGIGTMHYSGMAALELHGNIYYELPLFVLSLVIAVMLAFVALLFRFHSAK 180

Query: 181  IFHTTHGPALGSSALVMGLSTSGMHYTAMTATHFICRPWGEFFIQGIDIQEVAIAVTISI 240
            IFHTTHGPALGSSALVMGLSTSGMHYTAMTATHFICRPWGEFFIQGIDIQEVAIAVTISI
Sbjct: 181  IFHTTHGPALGSSALVMGLSTSGMHYTAMTATHFICRPWGEFFIQGIDIQEVAIAVTISI 240

Query: 241  TLLTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIE 300
            TLLTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIE
Sbjct: 241  TLLTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIE 300

Query: 301  KLFGYSQTELIGXXXXXXXXXXXXXXXXXXXXXXEDVGPTCPLDQEEFEILGTRYDGSEF 360
            KLFGYSQTELIG                      EDVGPTCPLDQEEFEILGTRYDGSEF
Sbjct: 301  KLFGYSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEF 360

Query: 361  PIEVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNG 420
            PIEVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNG
Sbjct: 361  PIEVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNG 420

Query: 421  ITQFANPHIGELVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRD 480
            ITQFANPHIGELVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRD
Sbjct: 421  ITQFANPHIGELVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRD 480

Query: 481  ILATFLATDYEGQKGILGWLADITPIXXXXXXXXXXXXXXXXXSRIKADFLANMSHEIRT 540
            ILATFLATDYEGQKGILGWLADITPI                 SRIKADFLANMSHEIRT
Sbjct: 481  ILATFLATDYEGQKGILGWLADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRT 540

Query: 541  PMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDF 600
            PMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDF
Sbjct: 541  PMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDF 600

Query: 601  DLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQ 660
            DLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQ
Sbjct: 601  DLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQ 660

Query: 661  GDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGL 720
            GDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGL
Sbjct: 661  GDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGL 720

Query: 721  AICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKSNVIPHRLVLSKDLEGKRVLVVDDND 780
            AICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKSNVIPHRLVLSKDLEGKRVLVVDDND
Sbjct: 721  AICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKSNVIPHRLVLSKDLEGKRVLVVDDND 780

Query: 781  HARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARR 840
            HARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARR
Sbjct: 781  HARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARR 840

Query: 841  LKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALA 900
            LKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALA
Sbjct: 841  LKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALA 900

Query: 901  QEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIA 960
            QEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIA
Sbjct: 901  QEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIA 960

Query: 961  LERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAG 1020
            LERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAG
Sbjct: 961  LERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAG 1020

Query: 1021 MNDHLGKPIEPEELWNKLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNSDDGLR 1080
            MNDHLGKPIEPEELWNKLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNSDDGLR
Sbjct: 1021 MNDHLGKPIEPEELWNKLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNSDDGLR 1080

Query: 1081 RVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIGXXXXXX 1140
            RVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIG      
Sbjct: 1081 RVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIGAQELQQ 1140

Query: 1141 XXXXXXXXXXXXWPQPEVENLLTNLGDRLDNLIAQLTSNLPPEPATVAITLDQGQLEEIC 1200
                        WPQPEVENLLTNLGDRLDNLIAQLTSNLPPEPATVAITLDQGQLEEIC
Sbjct: 1141 EAAELEKAIKEQWPQPEVENLLTNLGDRLDNLIAQLTSNLPPEPATVAITLDQGQLEEIC 1200

Query: 1201 DHLAQLLGEDDAEAADLLQNHGDLLRQAFPDHYSAIAAGINNFDFEAALAALTTARQFSQ 1260
            DHLAQLLGEDDAEAADLLQNHGDLLRQAFPDHYSAIAAGINNFDFEAALAALTTARQFSQ
Sbjct: 1201 DHLAQLLGEDDAEAADLLQNHGDLLRQAFPDHYSAIAAGINNFDFEAALAALTTARQFSQ 1260

Query: 1261 P 1261
            P
Sbjct: 1261 P 1261


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  351 bits (900), Expect = 9e-99
 Identities = 244/656 (37%), Positives = 344/656 (52%), Gaps = 64/656 (9%)

Query: 524  SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDIL 583
            +R K +FLA MSHEIRTPMN VIGMT L + TDL  +Q +Y+  IR SG+ LL +INDIL
Sbjct: 775  NRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDIL 834

Query: 584  DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643
            DFSKIEA KL +E+  F+L  +++ V  +    A  K LEL + ID   P   +GD +RL
Sbjct: 835  DFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRL 894

Query: 644  GQILINYANNAVKFTEQGDITIVVRLQEY---RDQDVVLYLA---------VKDTGIGIK 691
             QIL N   NA+KFTE+G++ + V+ + +        +L L          ++DTGIGI 
Sbjct: 895  RQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIP 954

Query: 692  PEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVC 751
             +    LF SF Q DSSTTR +GGTGLGL I +R+ ++MGG + V SE G GS F  + C
Sbjct: 955  LDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNF--RFC 1012

Query: 752  LQKSNVIPHRLVLS--KDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNF 809
            +  +   P        + ++GK+VL+VDDN+  R +++D  +    V     SG  AL++
Sbjct: 1013 ILTTAQAPALAEADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDW 1072

Query: 810  LAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTA---YGREELFVK 866
             A             +D QMPNMDG+ +A  L+         I ++++    G +EL V 
Sbjct: 1073 FARCP----DLDAAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAGADELSV- 1127

Query: 867  AKSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQ------------SSGIGAEDL 914
                    VL KP+  S++FDSL  +      LA    Q              G+  ED 
Sbjct: 1128 -----FQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDN 1182

Query: 915  ALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLM 974
            A      +   +ILL EDN +NQ+VA ++L ++G+ V +A NG   ++ L    Y LVLM
Sbjct: 1183 ATSLQPAL---QILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKFYDLVLM 1239

Query: 975  DMQMPEMDGIEATIAIRQN-PRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEE 1033
            DMQMP MDGI A   IRQ  P   Q  IVAMTAN M GDR+ CL AGM+ ++ KPI   +
Sbjct: 1240 DMQMPVMDGITACRHIRQTLPLERQPRIVAMTANAMPGDRQECLDAGMDGYISKPISINQ 1299

Query: 1034 LWNKLLHWIP--VDSPLAPETI-----------EESAINTSDPEIS--IPHIPGLNSDDG 1078
            L  K+L      + SP A E I           E++ +  +D   S   P       DD 
Sbjct: 1300 L-RKVLQDTSALITSPQAREDIVTLGDKITVVEEQTMVKPTDVTESPLDPTAIAFLRDD- 1357

Query: 1079 LRRVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIG 1134
                 G  +L+ +M+  +       + E+ Q L   D+    R AH+LK  + ++G
Sbjct: 1358 --LCGGDLTLFGEMVACYCQESQKLIEELVQGLEVDDFAVIRRTAHSLKSSSASLG 1411


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  298 bits (764), Expect = 5e-83
 Identities = 229/670 (34%), Positives = 325/670 (48%), Gaps = 81/670 (12%)

Query: 524  SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDIL 583
            +R K++FLA MSHEIRTPMNA+IGMT L L TDLT +Q+ +   IR SG+ LL +INDIL
Sbjct: 318  NRSKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLTTQQKYFAQTIRNSGETLLTLINDIL 377

Query: 584  DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643
            DFSKIEAGKL +E   FDL + L+    ++   A  K L L+      +P +  GD  RL
Sbjct: 378  DFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRL 437

Query: 644  GQILINYANNAVKFTEQGDITIVVRLQEY--RDQDVVLYLAVKDTGIGIKPEHIANLFNS 701
             QIL+N  +NAVKFTE G + + V + ++     +  +  AV+DTGIGI P     LF +
Sbjct: 438  RQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQA 497

Query: 702  FQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVES------------EYGQ----GST 745
            F Q +SS TR FGGTGLGLAIC R+  LMGG +  ES            + GQ    GST
Sbjct: 498  FSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIEGST 557

Query: 746  FWAKV-------CLQKSNVIPHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVE 798
            F+  V       C    + + H L +     G+ VLV D ++     M++LL   +   E
Sbjct: 558  FYFTVNLTVLPSCAYSVHNLRHSLFI-----GRSVLVADYDEGRGTRMRNLLASWRLQAE 612

Query: 799  TVE-SGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVA----RRLKAMGLNHQ--PS 851
             +  S P  L    ++      +  + +    P   G +       ++       Q  P 
Sbjct: 613  QITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTDFDLGKITTWAPTEQDIPV 672

Query: 852  IFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGD---PTALAQEMRQSSG 908
            +     Y             +   +  PI+P  L ++L  VLG    PT ++ E      
Sbjct: 673  LVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVLGQTEPPTLVSTEAISGPL 732

Query: 909  IGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNA 968
                   L          ILL EDN INQ+VA  LL+ +G+ VDV  NG  AL  L    
Sbjct: 733  FPYSSSNL---------TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGD 783

Query: 969  YALVLMDMQMPEMDGIEATIAIRQNPRYAQLP-IVAMTANVMQGDRERCLQAGMNDHLGK 1027
            Y +VLMD++MPEMDG+ AT  IR++   ++ P I+A+TA  M+GDRERCL +GMND++ K
Sbjct: 784  YDVVLMDVEMPEMDGLTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSK 843

Query: 1028 PIEPEELWNKL-----------------------LHWIPVDSPLAPETIEESAINTSDPE 1064
            PI  E L   L                           P  S   PE    + +   D +
Sbjct: 844  PIRLEALQQALQVAATALQSTSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPIDQD 903

Query: 1065 ISIPHIPGLNSDDGLRRVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAH 1124
            I I  +  L+ ++G       + +  +++  +  +    L  I  A+  +D+G     AH
Sbjct: 904  I-ICSLRDLDRENG-------QLILREIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAH 955

Query: 1125 TLKGVAGNIG 1134
            TL   + N+G
Sbjct: 956  TLGSSSANLG 965



 Score = 69.3 bits (168), Expect = 7e-14
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986
            IL+V+D + N  V +ELL   G++     +G  AL+R+      L+L+D+ MP MDG+E 
Sbjct: 20   ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79

Query: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
               ++Q+P+   +P++ +TA+  + D  +    G  D++ KP  P EL
Sbjct: 80   CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPEL 127



 Score = 65.9 bits (159), Expect = 8e-13
 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 759 PHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENH 818
           PH  + + + E   +LVVDD      V+ +LLE   +    V SGPEAL  + +A  +  
Sbjct: 6   PHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPD-- 63

Query: 819 PHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVK 878
              ++ +D  MP MDGLEV  RLK         +  +TA   ++  ++A + G  D + K
Sbjct: 64  ---LILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTK 120

Query: 879 PISPSVLFDSLARV 892
           P SP  L   LARV
Sbjct: 121 PFSPPEL---LARV 131


>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score =  296 bits (759), Expect = 2e-82
 Identities = 168/405 (41%), Positives = 246/405 (60%), Gaps = 22/405 (5%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDIL 583
           ++ K++FLANMSHEIRTPMNA+IGM+ L L+TDLT +QR YL K++++G+ LLG+IN+IL
Sbjct: 455 TKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGELLLGIINNIL 514

Query: 584 DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643
           DFSK+EAGKL +E   F +++V+ N+ +++  +A  KGL L F +D  +P   +GD LRL
Sbjct: 515 DFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRL 574

Query: 644 GQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQ 703
            QILIN  NNAVKFT QG+ITI  +L +  ++   L  +V DTGIG+ P+  + LF  F 
Sbjct: 575 SQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFN 634

Query: 704 QADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCL-QKSNVIPHRL 762
           Q ++ST+R +GGTGLGLAI K + ELMGG++ +ES  GQGSTF   VCL   S  +    
Sbjct: 635 QGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTASPAVAQDY 694

Query: 763 VLSK---------------DLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEAL 807
           ++S+                LEG  +L+V+DN+  R    DLL      V+   +G EAL
Sbjct: 695 LVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEAL 754

Query: 808 NFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKA 867
             L      ++ +  + +D QMP ++G +  R ++    +    I  +TA        KA
Sbjct: 755 TLLT-----SNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKA 809

Query: 868 KSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQSSGIGAE 912
              G++D L KPI P +LF +LA  +  P +  ++   SS + A+
Sbjct: 810 LDAGMNDHLTKPIKPDLLFQTLAHWI-PPNSAREKKNPSSNLKAD 853



 Score =  162 bits (411), Expect = 5e-42
 Identities = 101/239 (42%), Positives = 140/239 (58%), Gaps = 7/239 (2%)

Query: 898  ALAQEMRQS--SGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAA 955
            A+AQ+   S  S + A+    + + ++ GA ILLVEDNEIN+E A +LL   G  V VA 
Sbjct: 689  AVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVAN 748

Query: 956  NGLIALERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRER 1015
            NG  AL  L +N Y  +LMD+QMP ++G +AT AIRQ   +  LPI+AMTAN M GD+E+
Sbjct: 749  NGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEK 808

Query: 1016 CLQAGMNDHLGKPIEPEELWNKLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNS 1075
             L AGMNDHL KPI+P+ L+  L HWIP +S  A E    S+   +D  +S   + G+N 
Sbjct: 809  ALDAGMNDHLTKPIKPDLLFQTLAHWIPPNS--AREKKNPSSNLKAD--LSFSSMTGINQ 864

Query: 1076 DDGLRRVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIG 1134
              G+ + +    LY ++L KF    S+F  +        D   A R AH++KG A  +G
Sbjct: 865  QIGM-QYIENVELYHRLLVKFGDRYSNFADQFRTEQASDDPTAATRYAHSIKGAAALLG 922


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  235 bits (599), Expect = 7e-64
 Identities = 148/416 (35%), Positives = 226/416 (54%), Gaps = 30/416 (7%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTP-RQREYLHKIRFSGQHLLGVINDI 582
           ++ K+ F+ANMSHE+R+P+NA+IG + L L+T   P  Q E    I+ SG++LL +IN+I
Sbjct: 362 AKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRSGEYLLNLINNI 421

Query: 583 LDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLR 642
           LDFSKIEAGK  +   +FDL  +LD++  ++  KA N+G+EL+F  D +LPR+  GD ++
Sbjct: 422 LDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHDLPRYVYGDEIK 481

Query: 643 LGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVV-------------LYLAVKDTGIG 689
           L QIL+N  +NA+KFT +G++ +    +    Q+V+             L   +KDTG G
Sbjct: 482 LRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYWLDFTIKDTGKG 541

Query: 690 IKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAK 749
           I    +++LF +F Q +S       GTGLGLAI ++  +LMGG++ V S   QG+TF   
Sbjct: 542 ISEVELSHLFEAFSQTESGRNAQ-EGTGLGLAITRQFIKLMGGDINVSSVVDQGTTFSFS 600

Query: 750 VCLQKSNVIPHR--------LVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVE 801
           + +    +   R        L L+      ++LVVDD    R ++  LL    F +E   
Sbjct: 601 ILVDLGEITLSREPNSAKKVLALTPGQPVYKILVVDDKSVNRQLLIKLLAPFGFEIEEAS 660

Query: 802 SGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGRE 861
           +G EA+      +    PH ++F+D +MP MDG E  + +K     +  ++  +TA   E
Sbjct: 661 NGQEAIALWESWE----PH-LIFMDMRMPVMDGYEATKYIKGQVKGNATAVVALTASVLE 715

Query: 862 ELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQSSGIGAEDLALE 917
           E      S G DD L KP   + +FDSL + LG       E   +     ED AL+
Sbjct: 716 EEKAIVLSAGCDDFLRKPFRENTIFDSLTKHLG--VTYVYESAPNKNDNHEDTALK 769



 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            +IL+V+D  +N+++  +LL   GF ++ A+NG  A+    +    L+ MDM+MP MDG E
Sbjct: 631  KILVVDDKSVNRQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYE 690

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIPVD 1045
            AT  I+   +     +VA+TA+V++ ++   L AG +D L KP     +++ L   + V 
Sbjct: 691  ATKYIKGQVKGNATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSLTKHLGV- 749

Query: 1046 SPLAPETIEESAINTSD 1062
                   + ESA N +D
Sbjct: 750  -----TYVYESAPNKND 761


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  200 bits (508), Expect = 3e-53
 Identities = 133/382 (34%), Positives = 199/382 (52%), Gaps = 18/382 (4%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDIL 583
           +R K +FLA++SHE+RTP+NA+IG + L  +       R  L  I  SG+HLL +INDIL
Sbjct: 160 NRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSGEHLLELINDIL 219

Query: 584 DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643
           + SKIEAG+  +     D  ++LDN+  L   +A  K L L  +    +P     D  +L
Sbjct: 220 EMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEWIKTDGGKL 279

Query: 644 GQILINYANNAVKFTEQGDITIVVR------LQEYRDQDVVLYLAVKDTGIGIKPEHIAN 697
            Q+LIN   NA+KFT QG +T+ V+        E +   + L+  V DTG GI    +  
Sbjct: 280 RQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPGIAAHEMDE 339

Query: 698 LFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQ---K 754
           LF  F Q ++   ++  G GLGL I ++  +LMGG++ V S+  QGS F+  + +Q    
Sbjct: 340 LFVPFAQTETG-LKSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFAIPVQVMAA 398

Query: 755 SNVIPHRLVLS---KDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLA 811
               P    ++    D   ++VLVVDD   +RL+++ LL  + FVV+  E+G  A+    
Sbjct: 399 PKPTPETSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAI---- 454

Query: 812 EADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLG 871
            A  E+    ++ +D QMP +DG    +++KA        I  +TA   E    +  S G
Sbjct: 455 -ALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTASAFEGERAEILSAG 513

Query: 872 IDDVLVKPISPSVLFDSLARVL 893
            DD L KP  P  L   LA+ L
Sbjct: 514 CDDFLSKPFRPEELIALLAKHL 535



 Score = 78.6 bits (192), Expect = 1e-16
 Identities = 44/122 (36%), Positives = 69/122 (56%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            ++L+V+D   ++ +  +LL  +GF V  A NG +A+    +    ++LMDMQMP +DG  
Sbjct: 419  KVLVVDDRPESRLLLRQLLTSLGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRS 478

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIPVD 1045
             T  I+ +P+     I+A+TA+  +G+R   L AG +D L KP  PEEL   L   + V 
Sbjct: 479  TTQKIKASPQGQHTIIIALTASAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVA 538

Query: 1046 SP 1047
             P
Sbjct: 539  LP 540


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  187 bits (476), Expect = 1e-49
 Identities = 103/228 (45%), Positives = 147/228 (64%), Gaps = 5/228 (2%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQ-REYLHKIRFSGQHLLGVINDI 582
           +R+K++FLAN+SHEIRTPMNA++G   L L+ DL+  Q ++YL+ I  S + LL +I+DI
Sbjct: 597 NRVKSEFLANISHEIRTPMNAILGFCDLLLQKDLSLSQTKKYLNAIGSSSKILLALIDDI 656

Query: 583 LDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLR 642
           LD SKIEAGKL +     DL  ++  +  +   KA +K L L   ID  L +    D +R
Sbjct: 657 LDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKAESKSLLLTIQIDETLNQAIYFDAVR 716

Query: 643 LGQILINYANNAVKFTEQGDITIVVRLQ--EYRDQDVVLYLAVK--DTGIGIKPEHIANL 698
           L QIL N   NA+KFTE+G + I + ++  + R Q   + LA++  DTGIGI PE  A +
Sbjct: 717 LRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKI 776

Query: 699 FNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTF 746
           F+ F Q+   +TR +GGTGLGL I +R+  L+GGE+ + S  G+GSTF
Sbjct: 777 FDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGEISLSSRLGEGSTF 824


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  169 bits (427), Expect = 6e-44
 Identities = 113/320 (35%), Positives = 168/320 (52%), Gaps = 22/320 (6%)

Query: 445 YVDLGDR-------QQMLEELTQFGRSQSRVYKMYNPRGEIRDILATFLATDYEGQK--G 495
           ++ LGDR       +Q LE+ T      S   ++    GEI   L        +G+    
Sbjct: 330 FIHLGDRPMFWQAIEQSLEDPTM---ELSTELRLEAANGEIYHCLLRGQIHQEQGEAFVK 386

Query: 496 ILGWLADITPIXXXXXXXXXXXXXXXXXSRIKADFLANMSHEIRTPMNAVIGMTHLALKT 555
           I+G +ADIT I                 +++K +FLANMSHE+RTP+N+++GM       
Sbjct: 387 IIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQ 446

Query: 556 DLTP---RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATL 612
              P   +Q + L  +  SG+HLL +INDILD SKIEAG++ ++     +  ++++  T 
Sbjct: 447 VYGPLNGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTF 506

Query: 613 ISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVV----- 667
           + + A  K + L  +I  NLP   + D  RL Q+LIN  NNA+KFT +G   +V      
Sbjct: 507 VQQFAIQKQINLSSEIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIK 565

Query: 668 -RLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRI 726
            + +E       L   V DTGIGI+ + + N+F  F Q DS+  R + GTGLGL++ K+I
Sbjct: 566 EQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKI 625

Query: 727 AELMGGEVGVESEYGQGSTF 746
            EL GG V V S+  +GS F
Sbjct: 626 VELHGGSVTVTSKLNEGSRF 645


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  164 bits (416), Expect = 1e-42
 Identities = 97/228 (42%), Positives = 143/228 (62%), Gaps = 7/228 (3%)

Query: 527 KADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREY---LHKIRFSGQHLLGVINDIL 583
           K+ FLANMSHE+RTP+NA+IG + + ++        E    L KI  SG+ LL +IND+L
Sbjct: 438 KSIFLANMSHELRTPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLL 497

Query: 584 DFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRL 643
           D SKIEAGK+ +    F+L +++  +   IS    N   +L  +I       + GD ++L
Sbjct: 498 DISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLESEEVY-GDLIKL 556

Query: 644 GQILINYANNAVKFTEQGDITIVVRLQEYR-DQDVVLYLAVKDTGIGIKPEHIANLFNSF 702
            Q ++N  +NA KFT+ G I+ +V  +E++ D+   L   VKDTGIG+  E ++ LF  F
Sbjct: 557 RQGILNLLSNASKFTKDGIISFIV--EEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614

Query: 703 QQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKV 750
            QADSSTTR +GGTGLGLAI ++  ++MGG++ + SE G GS+F  K+
Sbjct: 615 TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKL 662


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  145 bits (366), Expect = 8e-37
 Identities = 91/240 (37%), Positives = 132/240 (55%), Gaps = 9/240 (3%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALK--TDLTPRQREYLHKIRFSGQHLLGVIND 581
           SR+K++FLA+ +HE+RTP+N +IG   L L    D    + E++ +   S   LL +IND
Sbjct: 191 SRLKSEFLASTTHELRTPLNGIIGFLRLILDDMADSEAEKHEFVEEAYQSALLLLNLIND 250

Query: 582 ILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPL 641
           ILD +KIEAG++ +E    D  +VL         +A NKGL          P    G+  
Sbjct: 251 ILDLAKIEAGRVGIELEVVDFSEVLQATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQR 310

Query: 642 RLGQILINYANNAVKFTEQGDITIVVR------LQEYRDQDVVLYLAVKDTGIGIKPEHI 695
            L Q+++N   NA+KFT +G IT+ V       L E   +  +L ++V DTGIG+  E  
Sbjct: 311 WLLQVMLNIVGNAIKFTHEGGITVAVEVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQ 370

Query: 696 ANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVES-EYGQGSTFWAKVCLQK 754
           + LF  F Q D S ++ +GGTGLGL I +++ E MGG+V   S   G GST    V L++
Sbjct: 371 SKLFKKFVQIDGSHSKAYGGTGLGLVISQKLVETMGGKVAFFSMGEGLGSTVTFTVLLEE 430


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  138 bits (348), Expect = 9e-35
 Identities = 107/383 (27%), Positives = 187/383 (48%), Gaps = 24/383 (6%)

Query: 526 IKADFLANMSHEIRTPMNAVIGMTHLALK-----TDLTP-RQREYLHKIRFSGQHLLGVI 579
           +K+ F+ N+SHE+RTP+ ++IG++   L+       L P +Q+ YL  I+ +G+ LL  I
Sbjct: 378 LKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQYYLLNIQENGKKLLDQI 437

Query: 580 NDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPR-HFIG 638
           N I+  S++E+G+  +    F L  +   V   +   A  + + L  D   N+ +  F  
Sbjct: 438 NSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQINLELDYQINVGQDQFCA 497

Query: 639 DPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANL 698
           D  RL QIL    NNA+KFT   + T+++R+ +  +Q +     V+DTGIGI  + +  L
Sbjct: 498 DQERLDQILTQLLNNALKFTP-AEGTVILRIWKESNQAI---FQVEDTGIGINEQQLPVL 553

Query: 699 FNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQK---- 754
           F +F+ A  S T  +   G+GLA+ K++ EL GG + VES  GQG+ F   +  Q     
Sbjct: 554 FEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIFTTVIPQQNFPPT 613

Query: 755 -SNVIPHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEA 813
               +  +L  +       +++  D + A L+  +LL    + V  +     AL  +   
Sbjct: 614 TKGQVQDKLDAAMPFNSSVIVIEQDEEIATLIC-ELLTVANYQVIWLIDTTNALQQV--- 669

Query: 814 DRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGID 873
             E     ++ +D     +D  EV R +K      + ++F+++       +      GID
Sbjct: 670 --ELLQPGLIIVDGDF--VDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGID 725

Query: 874 DVLVKPISPSVLFDSLARVLGDP 896
           D L+KP+ P +L   +  +  +P
Sbjct: 726 DYLLKPLQPELLLQRVQSIQQEP 748


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score =  137 bits (345), Expect = 2e-34
 Identities = 153/625 (24%), Positives = 276/625 (44%), Gaps = 49/625 (7%)

Query: 162  VIAVMLAFVALLFRFHSAKIFHTTHGPALGSSALVMGLSTSGMHYTAMTATHFICRPWGE 221
            +I + + F+ L   + + ++        +G S L + L T   +       HF      E
Sbjct: 564  IILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFY---AQQRHFWRTLKRE 620

Query: 222  FFIQGIDIQEVA-----IAVTISITLLT---GGVMLFVLREISIQNQQQKILVATESWYR 273
               Q  D++ V      I+V IS +++T     ++  ++ +I++Q   Q  L     + R
Sbjct: 621  QISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQRENYFRR 680

Query: 274  QIIEYAPEGIMVLDAQGNI-----ILANTSIEKLFGYSQTELIGXXXXXXXXXXXXXXXX 328
            Q++E   EG+ V             + N  ++ + GYSQ E I                 
Sbjct: 681  QLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQEE-INQCGWYETLYSHGQPQE 739

Query: 329  XXXXXXEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLSQREMNIFASVRDISA 388
                  + V     + +EE++I+  R DG+   +E+S   + S +Q   NI A ++DI+ 
Sbjct: 740  AVRVRMKAVALGVDMVKEEWQII--RRDGALRTVEISTALITSNNQT--NILAVIQDITD 795

Query: 389  RQEAQQQILRQREHLQSVLDSAPVGVAITVNGITQ--FANPHIGELVDLKVGDSPQKIYV 446
            ++   Q I      L+ ++++ P+   +     +   + NP    L     G +P ++Y 
Sbjct: 796  QKRQLQIIQNNEATLRCIVENLPIFFGMRTINFSNWYYINPSFESLT----GYTPDEMYE 851

Query: 447  D-----LGDRQQMLEELTQF--GRSQSRVYKMYNPRG-EIRDILATFLATDYEGQKGILG 498
            D        R++  E L Q      +  ++ M    G +I      FL  D      ++ 
Sbjct: 852  DPLLWQKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQIWAQTVEFLVDDLSDTARVVV 911

Query: 499  WLADITPIXXXXXXXXXXXXXXXXXSRIKADFLANMSHEIRTPMNAVIGMTHLALKTD-- 556
            +  DIT I                 +  K+ F+  +SHE RTP+ ++IG   L  K    
Sbjct: 912  FGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFRTPLTSIIGFGELLSKYFDR 971

Query: 557  -LTPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615
              T ++++Y++ I+ S Q L  +I+D+L  S+ +A K+ +E  + +L  + ++   LI  
Sbjct: 972  LSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIEIELGNINLRNLAND---LIEN 1028

Query: 616  KATNKGLELLFDIDRNLP--RHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYR 673
             +   G E  F+++ +L    H + D   L  IL N  +NA+K++  G     + L   +
Sbjct: 1029 FSCGLGSEHNFELNYHLKPDEHSLVDVRLLRHILENILSNAIKYSAPGS---TITLDISK 1085

Query: 674  DQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGE 733
            D++ +L+  V+D GIGI  +    LF +F +A  S   +  GTGLGL+I KR  E  GG 
Sbjct: 1086 DEEHLLF-QVRDEGIGIPLQDQEKLFEAFHRA--SNVGDIPGTGLGLSIVKRYVEFQGGT 1142

Query: 734  VGVESEYGQGSTFWAKVCLQKSNVI 758
            + V S  G+G+T   K+ L  + +I
Sbjct: 1143 IEVISMPGKGTTMVIKLPLNPAPII 1167



 Score = 59.7 bits (143), Expect = 5e-11
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 33/228 (14%)

Query: 234 IAVTISITLLTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNII 293
           + + +    + GG+ L+  R+IS   ++++ +  +E+ +R I     +G++VLD    I 
Sbjct: 242 LLINLKKVAINGGIYLYSCRDISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYIC 301

Query: 294 LANTSIEKLFGYSQTELIGXXXXXXXXXXXXXXXXXXXXXXEDVGPTCPLDQEEFEILGT 353
            AN    KL   +  EL+G                             PL+  EF +L  
Sbjct: 302 YANAQAVKLLNCTLEELVGTIGS-------------------------PLEDTEFSLLVD 336

Query: 354 RYDGSEFPIEVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVG 413
             DG+ + ++VS+T +    Q       S+RDIS R+  + Q+   +     +L++   G
Sbjct: 337 --DGTIYTVDVSVTEITWYGQTAK--LVSLRDISDRKRMENQLRENQNKYYRLLENLDNG 392

Query: 414 VAI-TVNGITQFANPHIGE---LVDLKVGDSPQKIYVDLGDRQQMLEE 457
           V +   N    +ANP       L DL+  D   + ++      + LE+
Sbjct: 393 VIVHNANAEIVYANPKAESFLGLTDLEGRDIDDEYWMFFDKEGEKLEK 440



 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 14/119 (11%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           +VL+VDD     + +   L+ +   + T  SG EA+   A  +      +++ +  +M  
Sbjct: 8   KVLLVDDQRENLVALSRALDSLPVEIITANSGQEAIATAATTE-----FALMILAQEMSE 62

Query: 832 MDGLEVARRLKAMGLNHQ-PSIFIVTAYGREELFVKAKS----LGIDDVLVKPISPSVL 885
           +DGL  A+ L++  L  Q P IF+     R+E+  KA +    LG+ D L +P + + L
Sbjct: 63  LDGLNTAKILRSFPLAEQTPIIFL----ARQEIITKAMAEINILGLVDFLAQPPNQNFL 117


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  130 bits (326), Expect = 3e-32
 Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 531 LANMSHEIRTPMNAVIGMTHLA---LKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSK 587
           L+++ HE RTP+ A+IG   +    L   L P+Q +Y+     S +HLL ++ND LD SK
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 588 IEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQIL 647
           I+A    +      ++ +   V +++  KA  K L L   ID  +   ++ D  R  QIL
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308

Query: 648 INYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADS 707
           IN  +N VKFT +G +T+ V+       D  L  +V DTGIGI PE   +LF  F+Q   
Sbjct: 309 INLLSNGVKFTPKGSVTLAVKAT-----DKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363

Query: 708 STTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKS 755
             +    GTGLGLA+ +R+A+L GG++ + S  G GS F A + L+ S
Sbjct: 364 PPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTS 411


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 92.8 bits (229), Expect = 6e-21
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 18/242 (7%)

Query: 524 SRIKADFLANMSHEIRTPMNAVIGMTHLALKTD---LTPRQREY-LHKIRFSGQHLLGVI 579
           SR+K  F +  SHE RTP++  +    L   ++   L P +R   LH+I+ S ++++ ++
Sbjct: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLL 125

Query: 580 NDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFD-IDRNLPRHFIG 638
           +DIL  ++ EAGKL       DL  +       I E   +   +  FD I        + 
Sbjct: 126 DDILIINRAEAGKLEFNPNWLDLKLLFQQ---FIEEIQLSVSDQYYFDFICSAQDTKALV 182

Query: 639 DPLRLGQILINYANNAVKFTEQG-DITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIAN 697
           D   +  IL N  +NA+K++  G  I I + L    D + +++  V D GIGI PE    
Sbjct: 183 DERLVRSILSNLLSNAIKYSPGGGQIKIALSL----DSEQIIF-EVTDQGIGISPEDQKQ 237

Query: 698 LFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCLQKSNV 757
           +F  F +  +   RN  GTGLGL + K+  +L  G + ++S   QG+T    +CL++ N 
Sbjct: 238 IFEPFHRGKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT--VTICLKRYNH 293

Query: 758 IP 759
           +P
Sbjct: 294 LP 295


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 89.4 bits (220), Expect = 6e-20
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984
            A++LLVEDNE+N+++ +  L   G+ V +A +G  A+    + +  L+LMDM +P +DG 
Sbjct: 5    AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64

Query: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038
             AT  I+ +P  A +PI+A+TA+ M  DRER + AG +D+  KPIE + L  K+
Sbjct: 65   TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 18/221 (8%)

Query: 535 SHEIRTPMNAV---IGMTHLALKTDLTPRQREYLHKIRFSGQHLLGVINDILDFSKIEA- 590
           SH+++ P+N V   + +  +     L    ++++         +  +I+DIL ++K++  
Sbjct: 537 SHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQ 596

Query: 591 -GKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRHFIGDPLRLGQILIN 649
             +L    +   +DK L N+   I E           +I+       + D ++L Q+  N
Sbjct: 597 YAQLTFTDVQEVVDKALANLKQRIEESGA--------EIEVGSMPAVMADQIQLMQVFQN 648

Query: 650 YANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHIANLFNSFQQADSST 709
              N +KF   GD +  +++   R +D  ++ AV+D GIGI P+    +F  FQ+    T
Sbjct: 649 LIANGIKFA--GDKSPKIKIWGDRQEDAWVF-AVQDNGIGIDPQFFERIFVIFQRLH--T 703

Query: 710 TRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKV 750
              + GTG+GLAICK+I E   G++ +ES  G+GSTF+  +
Sbjct: 704 RDEYKGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSI 744


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 77.4 bits (189), Expect = 3e-16
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 927  ILLVEDNEINQEVAAELLRDVG-FNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            +LLV+D    +E     L D G F VD+AAN   A + L ++  ALV+ D+ MP++DG +
Sbjct: 58   LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
                +R++ R+  LP+V +TA  M GDR +  Q G +  L KP +P+EL
Sbjct: 118  FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDEL 166



 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 27/197 (13%)

Query: 773 VLVVDDNDHARLVMKDLLEQM-KFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           +L+VDD    R  ++  LE    F V+   +  EA ++L     ++H  ++V  D  MP 
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYL-----QHHLPALVISDIMMPQ 112

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISP----SVLFD 887
           +DG +  ++L+         +  +TA G     ++    G D  L KP  P    +++ +
Sbjct: 113 VDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRN 172

Query: 888 SLAR----------------VLGDPTALAQEMRQSSGIGAEDLALEKLRRIRGARIL-LV 930
            LAR                +  +  AL +++ Q SGI      ++     R   +L LV
Sbjct: 173 LLARQQASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLV 232

Query: 931 EDNEINQEVAAELLRDV 947
               +N+E+AA+L   V
Sbjct: 233 SQGLMNKEIAAQLKTSV 249


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 74.3 bits (181), Expect = 2e-15
 Identities = 36/108 (33%), Positives = 68/108 (62%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986
            +LLVED+   +E+ + +L+D G+ V +A +G+ ALE+L N +  LV++D+ MP M+G E 
Sbjct: 30   VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89

Query: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
               I+ +P+   +P++  ++   + DR   ++ G + ++ KP +P EL
Sbjct: 90   CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMEL 137



 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832
           VL+V+D+   R ++  +L+   + V     G EAL  L     +N    +V +D  MP M
Sbjct: 30  VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKL-----QNFSPDLVVLDIVMPRM 84

Query: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892
           +G EV RR+K+        + + ++ G E         G D  + KP  P  L  ++ ++
Sbjct: 85  NGYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQL 144

Query: 893 L 893
           L
Sbjct: 145 L 145


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-14
 Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984
            +++LLV+D+    E+ + LL   GF+V+ A NGL AL++L N +Y LVL+D+ MP+++GI
Sbjct: 2    SKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNGI 60

Query: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
            E    IR   + + +P++ +TA     DR   L+ G +D L KP    EL
Sbjct: 61   ETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDREL 107



 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           ++L+VDD+     ++  LLE   F VET  +G EAL  L      N  + +V +D  MP 
Sbjct: 3   KLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL------NESYKLVLLDVMMPK 56

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891
           ++G+E  + ++ +       + ++TA G +   V    LG DD L KP +   L   +  
Sbjct: 57  LNGIETLKEIRKVS---NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKA 113

Query: 892 VL 893
           +L
Sbjct: 114 IL 115


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 36/108 (33%), Positives = 59/108 (54%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986
            +LLV+D+     +  + L   G+ V  A NG  AL+ L      +++ D+ MPEMDG   
Sbjct: 10   LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYAF 69

Query: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
               +RQNP  + +P++ ++A     +R + L  G + ++ KP EPEEL
Sbjct: 70   IEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEEL 117



 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 764 LSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIV 823
           +S+  E   +L+VDD+ +  L++KD LE   + V T  +G EAL+ L     +     ++
Sbjct: 1   MSQSKENYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPD-----MI 55

Query: 824 FIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPS 883
             D  MP MDG     +++         +  ++A G+    VK  ++G D  + KP  P 
Sbjct: 56  VCDIMMPEMDGYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPE 115

Query: 884 VLFDSLARVLGDPTALAQ 901
            L   +   L     L Q
Sbjct: 116 ELAAQVQSCLRQADRLLQ 133


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 67.4 bits (163), Expect = 3e-13
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 18/148 (12%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            RILLVED+    E  AE L D  + VD+A +  +A +  +   Y LV++D+ +PE+DGI 
Sbjct: 2    RILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI- 60

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNK-------- 1037
             T+  +       +PI+ MTA     D+   L AG +D++ KP++  EL+ +        
Sbjct: 61   -TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRG 119

Query: 1038 ------LLHWIPVDSPLAPETIEESAIN 1059
                  +L W P+   L P T E S  N
Sbjct: 120  CATCQPVLEWGPI--RLDPSTYEVSYDN 145


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 65.9 bits (159), Expect = 8e-13
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYA--LVLMDMQMPEMDGI 984
            IL+VED  I +E+  E L    + +  A NG +AL  LN+      L++ D+ MPEMDG 
Sbjct: 4    ILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMDGH 63

Query: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWN 1036
                A+++N + A +P + +TA     D  + + +G +D+L KP + E+L N
Sbjct: 64   GLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLN 115


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 8/121 (6%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           R+L+V+D     + +K +L   K+VV+ V  G +A ++L     E   +++  +DW +P 
Sbjct: 2   RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTE---YTLAIVDWLLPG 58

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891
           + GLE+ ++L+  G N  P + ++TA G  E  V+    G DD L KP    V+ + LAR
Sbjct: 59  LSGLELCQKLRTQG-NSLP-VLMLTALGEPENRVEGLDAGADDYLTKPF---VMAELLAR 113

Query: 892 V 892
           +
Sbjct: 114 L 114



 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNN--AYALVLMDMQMPEMDG 983
            RILLVED         ++L    + VD   +G  A + L N    Y L ++D  +P + G
Sbjct: 2    RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61

Query: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038
            +E    +R       LP++ +TA     +R   L AG +D+L KP    EL  +L
Sbjct: 62   LELCQKLRTQGN--SLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARL 114


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
            regulatory protein (phoB)
          Length = 231

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 17/160 (10%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            +IL+VED    +E+ A  L    ++V  A++   A+ ++  N   L+L+D  +P   GI+
Sbjct: 4    KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQ 62

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEP-------EELWNKL 1038
                I++   YA +PI+ +TA   + D   CL AG +D++ KP  P       E +W ++
Sbjct: 63   FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 1039 L----HWIPVDSPLAPET-----IEESAINTSDPEISIPH 1069
                  +I +D     E       ++  IN S  E  + H
Sbjct: 123  YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLH 162



 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 771 KRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMP 830
           +++L+V+D    R ++   L Q  + V        A+N + E  +      ++ +DW +P
Sbjct: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENPK------LILLDWMLP 56

Query: 831 NMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLA 890
              G++  + +K         I ++TA   EE  +   + G DD + KP SP +L   LA
Sbjct: 57  GRSGIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQIL---LA 113

Query: 891 RVLGDPTALAQEMRQSSGIGAEDLALEKLRRIRGARILLVEDNEIN 936
           R+      + ++  QS  I  ++L++++      A+ +  +  EIN
Sbjct: 114 RIEAVWRRIYEQ--QSQFIQIDELSIDE-----NAQRVFFQQQEIN 152


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 62.4 bits (150), Expect = 8e-12
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832
           +L+V+D+     ++++ LE+ +F       G   L    E   +     ++ +D  +P +
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPD-----LIVLDLMLPKL 68

Query: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892
           DGLEV  R++    +  P I ++TA G E   +   S G DD LVKP SP  L   +ARV
Sbjct: 69  DGLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREL---VARV 125

Query: 893 LGDPTALAQEMRQSSGIG 910
                 L +++RQ   +G
Sbjct: 126 ---RALLRRQLRQGQPVG 140



 Score = 58.5 bits (140), Expect = 1e-10
 Identities = 35/108 (32%), Positives = 54/108 (50%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986
            IL+VED++   ++  E L    F   V  +G   L         L+++D+ +P++DG+E 
Sbjct: 14   ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
               IRQ P      I+ +TA   + DR   L  G +D+L KP  P EL
Sbjct: 74   CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPREL 121


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 62.0 bits (149), Expect = 1e-11
 Identities = 33/108 (30%), Positives = 62/108 (57%)

Query: 927  ILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEA 986
            ILLV+D   N ++ ++LL ++G+ V    +G +AL  L      L+L+D++MP+MDG + 
Sbjct: 11   ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70

Query: 987  TIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
               I++      +PI+ ++A     D+ +  + G  D++ KP + EE+
Sbjct: 71   CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEV 118



 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 14/139 (10%)

Query: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832
           +L+VDD  +   ++ DLL  + + V +V SG  AL  L    +   P  ++ +D +MP+M
Sbjct: 11  ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTL----QVKRP-DLILLDIKMPDM 65

Query: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892
           DG +V   +K         I  ++A G     VKA   G  D + KP     + + +AR+
Sbjct: 66  DGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ---IEEVVARI 122

Query: 893 LGDPT------ALAQEMRQ 905
            G  T      AL +E+R+
Sbjct: 123 EGQFTIQRQRIALKREVRK 141


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (ygiX)
          Length = 221

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            RILL+ED+ +        L  +GF VD   +G   +  L +  Y  V++D+ +P++DG+E
Sbjct: 2    RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038
                 R N  +  +P++ +TA     +R + LQ+G +D+L KP    E+  +L
Sbjct: 62   VLQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARL 112



 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           R+L+++D++     ++  L ++ F V+    G   +  L  A     P+  V +D  +P 
Sbjct: 2   RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSA-----PYDAVVLDLTLPK 56

Query: 832 MDGLEVARRLKAMGLNHQP-SIFIVTAYGREELFVKAKSLGIDDVLVKPIS 881
           +DGLEV ++ ++   NHQ   + I+TA    +  VK    G DD L KP +
Sbjct: 57  LDGLEVLQQWRS---NHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFA 104


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 28/109 (25%), Positives = 60/109 (55%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            RIL+++D+    ++ +  L   G++V  A +G+            L+++D+ +P++DG  
Sbjct: 3    RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
                +R++ R A +P++ +TA     D+ +   +G +D+L KP + EE+
Sbjct: 63   VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEM 111


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           ++LVVDD+   R+ ++  L++    VE   +G EAL   AE   E     +V +D  MP 
Sbjct: 13  KILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPE-----VVLLDAVMPV 67

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLAR 891
           MDG    + L  +  N  P + ++T    E    +A   G  D + KPI  +VL   + R
Sbjct: 68  MDGFACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKR 127

Query: 892 VL 893
           +L
Sbjct: 128 LL 129



 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984
            A+IL+V+D+   +      L+  G  V++A NG  AL +       +VL+D  MP MDG 
Sbjct: 12   AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71

Query: 985  ---EATIAIRQNPRYAQLPIVAMTANV-MQGDRERCLQAGMNDHLGKPI 1029
               +A + I QNP     P+V M   +  +   +R  +AG  D++ KPI
Sbjct: 72   ACCQALMKIYQNPS----PLVLMITGLDDEASVDRAFEAGAIDYVTKPI 116


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 926  RILLVEDNEI-NQEVAAELLRDVGFNVDVAA-NGLIALERLNNNAYALVLMDMQMPEMDG 983
            R+L+ +D+ I  Q +A  + RD    V   A NG  A+     +   + LMD++MPE++G
Sbjct: 8    RVLIADDHAIFRQGLATIINRDPDMQVIAQAENGEQAIALFEEHQPDVTLMDLRMPEVEG 67

Query: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWIP 1043
            + A  AI    ++A+  I+ +T      D  R LQAG   +L K  EP+EL N +     
Sbjct: 68   VAAISAICAIVKFAR--IIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHR 125

Query: 1044 VDSPLAPETIEESAINTSDPEISIPHIPGLNS 1075
                + P+   +     S+PE+S   +  L S
Sbjct: 126  GQKYIPPDVGAKLVQRLSNPELSERELEVLGS 157


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 925  ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984
            A ILLV+D     E  ++ L   G  +DVA  G   L       Y L+++D  +P++ G+
Sbjct: 2    ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 985  EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
            E    IR        P++ +TA     DR   L AG +D+L KP E  EL
Sbjct: 62   EICRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELREL 109



 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832
           +L+VDD +     +   L      ++  + G   L            + ++ +DW +P +
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQ-----YDLLILDWMLPQV 58

Query: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892
            GLE+ R+++ +G  H   +  +TA    +  V     G DD L+KP     L + LARV
Sbjct: 59  SGLEICRQIRILG--HSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFE---LRELLARV 113


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 759 PHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAE--ADRE 816
           PH L   +     R+LVV+D    R  +   L++  + V  V+ G +AL  L E   D  
Sbjct: 19  PHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPG 78

Query: 817 NHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVL 876
                ++ +D  +P ++GL+V R L+  G N    I IV+A G E   V    +G DD +
Sbjct: 79  QAAVDLIILDIMLPQVNGLDVCRSLRFGGDN--TPILIVSAKGSEMEKVTGLEVGADDYI 136

Query: 877 VKPIS 881
            KP S
Sbjct: 137 TKPFS 141



 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 9/116 (7%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNN-------NAYALVLMDMQM 978
            RIL+VED    +E     L++ G+ V    +G  AL  L          A  L+++D+ +
Sbjct: 32   RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 979  PEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
            P+++G++   ++R        PI+ ++A   + ++   L+ G +D++ KP   +EL
Sbjct: 92   PQVNGLDVCRSLRFGGD--NTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKEL 145


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
            (arcA)
          Length = 236

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            +IL+VED  + +     +    G++V  A NG+     L N+   LV+MD+ +P  +G+ 
Sbjct: 5    KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
                +R+      LP++ +T    + D+   L+ G +D+L KP  P EL
Sbjct: 65   LARELREE---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110



 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 12/116 (10%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           ++LVV+D    R  +K + E   + V   E+G E  + LA     NH  ++V +D  +P 
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILA-----NHNINLVVMDINLPG 59

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSL--GIDDVLVKPISPSVL 885
            +GL +AR L+      + S+ ++   GR+    K   L  G DD L KP +P  L
Sbjct: 60  KNGLLLARELR-----EELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 929  LVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIEATI 988
            +V+D    + +    L  +G+ V  AA+G  A+   + +   LV++D+ MP++DG     
Sbjct: 1    MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 989  AIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
             +R+    + +PI+ +TA     DR   L+ G +D++ KP  P+EL
Sbjct: 61   ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKEL 103



 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 775 VVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNMDG 834
           +VDD    R +++  L  + + V T   G EA+    E+D +     +V +D  MP +DG
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPD-----LVVLDVMMPKLDG 55

Query: 835 LEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARVL 893
             V + L+         I ++TA G     +    LG DD +VKP SP  L   +  VL
Sbjct: 56  YGVCQELRK---ESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVL 111


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 50.1 bits (118), Expect = 4e-08
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           R+L+V+D     + ++  L +  +VV+ V+ G  A ++L   D+    +++   DW +P 
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYL---DQGWVNYTLAIFDWMVPG 58

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSL 889
           + GLE+ ++L+  G      I ++TA  +    V+    G DD L+KP   + L   L
Sbjct: 59  LSGLELCQKLR--GQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARL 114



 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNN--AYALVLMDMQMPEMDG 983
            R+LLVED         + LR   + VD   +G +A   L+     Y L + D  +P + G
Sbjct: 2    RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038
            +E    +R   + + LPI+ +TA     DR   L AG +D+L KP    EL  +L
Sbjct: 62   LELCQKLRG--QRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARL 114


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 926  RILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGIE 985
            R+L+VE+ E         L+  G++V VA +GL    +       L++++  +P M G+E
Sbjct: 4    RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 986  ATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038
                +R+    +++PI+ +TA     +R   L AG +D++ KP   +E + ++
Sbjct: 64   LCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARI 114



 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 772 RVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPN 831
           RVLVV++ +     M+  L+   + V     G +          +  P  ++ ++  +P 
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFT-----QAQEFPPDLIIVNGALPG 58

Query: 832 MDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLF 886
           M GLE+ RRL+ MG   +  I ++TA    E  V     G DD +VKP +    F
Sbjct: 59  MSGLELCRRLREMG--SRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFF 111


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 31/201 (15%)

Query: 768 LEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDW 827
           +E  R+ +++D D  R  ++D L  M+   E V  G  A   L     +     +V ID 
Sbjct: 1   MEKIRIALIEDEDLIRQGLQDALT-MEPSFEWV--GEAANGRLGLVMMQQTRPDVVIIDI 57

Query: 828 QMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFD 887
            +P+M+G++V ++LK   LN Q  + I+T   +EE  + A S G D   +K     +L +
Sbjct: 58  GLPDMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIE 117

Query: 888 --------------SLARVL------GDPTALAQEMRQSSGIGAEDLALEKLRRIRGARI 927
                         ++AR++       +P+  +   R S   G  +  LE L+       
Sbjct: 118 AIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSYGLTERELEVLQ------- 170

Query: 928 LLVEDNEINQEVAAELLRDVG 948
            L+ D   N ++A +L   VG
Sbjct: 171 -LIVDGCSNADIAEKLYITVG 190



 Score = 45.8 bits (107), Expect = 8e-07
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 926  RILLVEDNE-INQEVAAELLRDVGFN-VDVAANGLIALERLNNNAYALVLMDMQMPEMDG 983
            RI L+ED + I Q +   L  +  F  V  AANG + L  +      +V++D+ +P+M+G
Sbjct: 5    RIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLPDMNG 64

Query: 984  IEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEEL 1034
            I+ T  +++ P   Q  +V +T N  +        AG + +  K    E L
Sbjct: 65   IDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELL 115


>SYNE-PCC-01-000877 sll1330
          Length = 250

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 773 VLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMPNM 832
           + VV+ N H R ++   L+Q  ++V+      +A          N   ++  ID  + + 
Sbjct: 6   ISVVEGNPHLRSLLSWHLQQSGYLVQQCSGFHQARQAF-----NNQLPTLAVIDSDLTDG 60

Query: 833 DGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLARV 892
           DG+E+ R L      HQ  IFI++A   E+  V     G DD L KP     + + LAR+
Sbjct: 61  DGIELCRWLYQQ---HQSMIFILSAKDTEKDIVHGLKAGADDYLTKPFG---MQEFLARI 114


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,695
Number of Sequences: 78
Number of extensions: 4710
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 38
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 84
length of query: 1261
length of database: 48,235
effective HSP length: 73
effective length of query: 1188
effective length of database: 42,541
effective search space: 50538708
effective search space used: 50538708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002879 slr2104 
         (950 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002879 slr2104                                           1822   0.0  
SYNE-PCC-01-002873 slr2098                                            287   1e-79
SYNE-PCC-01-002617 slr1759                                            262   4e-72
SYNE-PCC-01-001132 sll1672                                            240   1e-65
SYNE-PCC-01-001306 sll1905                                            224   9e-61
SYNE-PCC-01-000800 sll1228                                            219   4e-59
SYNE-PCC-01-000891 sll1353                                            190   2e-50
SYNE-PCC-01-001280 sll1871                                            181   9e-48
SYNE-PCC-01-000295 sll0474                                            172   4e-45
SYNE-PCC-01-001294 sll1888                                            149   3e-38
SYNE-PCC-01-002778 slr1969                                            132   5e-33
SYNE-PCC-01-001509 slr0210                                            124   1e-30
SYNE-PCC-01-001517 slr0222                                             99   5e-23
SYNE-PCC-01-002788 slr1982                                             97   2e-22
SYNE-PCC-01-000985 sll1475                                             89   8e-20
SYNE-PCC-01-001690 slr0473                                             79   6e-17
SYNE-PCC-01-002086 slr1042                                             69   7e-14
SYNE-PCC-01-001133 sll1673                                             69   7e-14
SYNE-PCC-01-002731 slr1909                                             68   1e-13
SYNE-PCC-01-002635 slr1783                                             68   1e-13
HINF-KW2-01-000816 HI0837  response regulator (cpxR)                   66   6e-13
SYNE-PCC-01-002489 slr1588                                             62   6e-12
HINF-KW2-01-001671 HI1708  transcriptional regulatory protein (y...    62   1e-11
SYNE-PCC-01-002618 slr1760                                             61   1e-11
HINF-KW2-01-000863 HI0884  aerobic respiration control protein A...    60   2e-11
SYNE-PCC-01-002672 slr1837                                             59   7e-11
SYNE-PCC-01-002033 slr0947                                             59   9e-11
SYNE-PCC-01-000414 sll0649                                             58   2e-10
SYNE-PCC-01-000608 sll0921                                             57   3e-10
SYNE-PCC-01-001461 slr0115                                             56   4e-10
SYNE-PCC-01-001437 slr0081                                             56   4e-10
HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional reg...    56   6e-10
SYNE-PCC-01-002486 slr1584                                             55   1e-09
SYNE-PCC-01-000242 sll0396                                             52   1e-08
SYNE-PCC-01-000523 sll0797                                             45   1e-06
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    44   2e-06
SYNE-PCC-01-001575 slr0312                                             43   4e-06
SYNE-PCC-01-000518 sll0789                                             43   5e-06

>SYNE-PCC-01-002879 slr2104
          Length = 950

 Score = 1822 bits (4719), Expect = 0.0
 Identities = 928/950 (97%), Positives = 928/950 (97%)

Query: 1   MKSFFLNTFSPLRSTARFWVLVALLTSMELSASQLRDTEQAVAIEESKCTDCVEGRGTGI 60
           MKSFFLNTFSPLRSTARFWVLVALLTSMELSASQLRDTEQAVAIEESKCTDCVEGRGTGI
Sbjct: 1   MKSFFLNTFSPLRSTARFWVLVALLTSMELSASQLRDTEQAVAIEESKCTDCVEGRGTGI 60

Query: 61  VRGESFAQVETVPTEAKVEQIKPMIERISPHLGLVGFGLAFIGVLWLTYLLKKDRQTKAQ 120
           VRGESFAQVETVPTEAKVEQIKPMIERISPHLGLVGFGLAFIGVLWLTYLLKKDRQTKAQ
Sbjct: 61  VRGESFAQVETVPTEAKVEQIKPMIERISPHLGLVGFGLAFIGVLWLTYLLKKDRQTKAQ 120

Query: 121 LAFQARRSDVLLELPQYADRLSEVEFLQRGQEFAEELTKSKIAFIHFVNDDEQTIELVAW 180
           LAFQARRSDVLLELPQYADRLSEVEFLQRGQEFAEELTKSKIAFIHFVNDDEQTIELVAW
Sbjct: 121 LAFQARRSDVLLELPQYADRLSEVEFLQRGQEFAEELTKSKIAFIHFVNDDEQTIELVAW 180

Query: 181 SRATLANYCRVVAASHYPVEEAGIWADALRLRRPVLINDYATHQGKKGLPEGHAYLARLI 240
           SRATLANYCRVVAASHYPVEEAGIWADALRLRRPVLINDYATHQGKKGLPEGHAYLARLI
Sbjct: 181 SRATLANYCRVVAASHYPVEEAGIWADALRLRRPVLINDYATHQGKKGLPEGHAYLARLI 240

Query: 241 SVPVIDDGKVVMLTGVGNKDVFYTDQDVETVQLISNEIWRIARSRRLVKKLTESENRYRL 300
           SVPVIDDGKVVMLTGVGNKDVFYTDQDVETVQLISNEIWRIARSRRLVKKLTESENRYRL
Sbjct: 241 SVPVIDDGKVVMLTGVGNKDVFYTDQDVETVQLISNEIWRIARSRRLVKKLTESENRYRL 300

Query: 301 AQAIAKIGNWELDYATNVLFWSPEVFNLFEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQ 360
           AQAIAKIGNWELDYATNVLFWSPEVFNLFEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQ
Sbjct: 301 AQAIAKIGNWELDYATNVLFWSPEVFNLFEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQ 360

Query: 361 CHLQKYQPYDIVHRLLMPDGRIKYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLE 420
           CHLQKYQPYDIVHRLLMPDGRIKYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLE
Sbjct: 361 CHLQKYQPYDIVHRLLMPDGRIKYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLE 420

Query: 421 HLNEKLEQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMS 480
           HLNEKLEQRIQERT            AKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMS
Sbjct: 421 HLNEKLEQRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMS 480

Query: 481 ELVLQTDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNL 540
           ELVLQTDLTSQQRNYLQKVQYAGE          DFSKMEAGKLELEQKPFSVEEVMGNL
Sbjct: 481 ELVLQTDLTSQQRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNL 540

Query: 541 HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQL 600
           HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQL
Sbjct: 541 HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQL 600

Query: 601 LKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTEL 660
           LKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTEL
Sbjct: 601 LKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTEL 660

Query: 661 MGGDIWLESVVGQGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASI 720
           MGGDIWLESVVGQGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASI
Sbjct: 661 MGGDIWLESVVGQGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASI 720

Query: 721 LLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDAT 780
           LLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDAT
Sbjct: 721 LLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDAT 780

Query: 781 RAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPPNSA 840
           RAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPPNSA
Sbjct: 781 RAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPPNSA 840

Query: 841 REKKNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFGDRYSNFADQFRTEQA 900
           REKKNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFGDRYSNFADQFRTEQA
Sbjct: 841 REKKNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFGDRYSNFADQFRTEQA 900

Query: 901 SDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSCREHESPEMIDRHL 950
           SDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSCREHESPEMIDRHL
Sbjct: 901 SDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSCREHESPEMIDRHL 950


>SYNE-PCC-01-002873 slr2098
          Length = 1261

 Score =  287 bits (734), Expect = 1e-79
 Identities = 166/413 (40%), Positives = 243/413 (58%), Gaps = 22/413 (5%)

Query: 447 AKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEXX 506
           AK +AE A++ K++FLANMSHEIRTPMNA+IGM+ L L+TDLT +QR YL K++++G+  
Sbjct: 516 AKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSGQHL 575

Query: 507 XXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPI 566
                   DFSK+EAGKL +E   F +++V+ N+ +++  +A  KGL L F +D  +P  
Sbjct: 576 LGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNLPRH 635

Query: 567 LVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQ 626
            +GD LRL QILIN  NNAVKFT QG+ITI  +L +  ++   L  +V DTGIG+ P+  
Sbjct: 636 FIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKPEHI 695

Query: 627 SKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTA 686
           + LF  F Q ++ST+R +GGTGLGLAI K + ELMGG++ +ES  GQGSTF   VCL   
Sbjct: 696 ANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCL-QK 754

Query: 687 SPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQV 746
           S  +    ++S+                LEG  +L+V+DN+  R    DLL      V+ 
Sbjct: 755 SNVIPHRLVLSK---------------DLEGKRVLVVDDNDHARLVMKDLLEQMKFVVET 799

Query: 747 ANNGQEALTLLT-----SNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANA 801
             +G EAL  L      ++ +  + +D QMP ++G +  R ++    +    I  +TA  
Sbjct: 800 VESGPEALNFLAEADRENHPHSIVFIDWQMPNMDGLEVARRLKAMGLNHQPSIFIVTAYG 859

Query: 802 MAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWI-PPNSAREKKNPSSNLKAD 853
                 KA   G++D L KPI P +LF +LA  +  P +  ++   SS + A+
Sbjct: 860 REELFVKAKSLGIDDVLVKPISPSVLFDSLARVLGDPTALAQEMRQSSGIGAE 912



 Score =  171 bits (432), Expect = 1e-44
 Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 7/256 (2%)

Query: 689  AVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVAN 748
            A+AQ+   S  S + A+    + + ++ GA ILLVEDNEIN+E A +LL   G  V VA 
Sbjct: 898  ALAQEMRQS--SGIGAEDLALEKLRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAA 955

Query: 749  NGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEK 808
            NG  AL  L +N Y  +LMD+QMP ++G +AT AIRQ   +  LPI+AMTAN M GD+E+
Sbjct: 956  NGLIALERLNNNAYALVLMDMQMPEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRER 1015

Query: 809  ALDAGMNDHLTKPIKPDLLFQTLAHWIPPNS--AREKKNPSSNLKAD--LSFSSMTGINQ 864
             L AGMNDHL KPI+P+ L+  L HWIP +S  A E    S+   +D  +S   + G+N 
Sbjct: 1016 CLQAGMNDHLGKPIEPEELWNKLLHWIPVDSPLAPETIEESAINTSDPEISIPHIPGLNS 1075

Query: 865  QIGM-QYIENVELYHRLLVKFGDRYSNFADQFRTEQASDDPTAATRYAHSIKGAAALLGI 923
              G+ + +    LY ++L KF    S+F  +        D   A R AH++KG A  +G 
Sbjct: 1076 DDGLRRVLGKKSLYLKMLHKFVASQSSFLPEITQALGEKDYGFAERLAHTLKGVAGNIGA 1135

Query: 924  ENVHHTAQQLEDSCRE 939
            + +   A +LE + +E
Sbjct: 1136 QELQQEAAELEKAIKE 1151


>SYNE-PCC-01-002617 slr1759
          Length = 1462

 Score =  262 bits (669), Expect = 4e-72
 Identities = 158/442 (35%), Positives = 246/442 (55%), Gaps = 35/442 (7%)

Query: 408  DVTELQEA---QISLEHLNEKLEQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLAN 464
            D  EL EA   Q+ +      L ++ +ER             A   AE A +AK EFLA 
Sbjct: 725  DEIELLEAIAEQMGIALAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAM 784

Query: 465  MSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKL 524
            MSHEIRTPMN +IGM+EL++ TDL  QQ +Y+Q ++ +GE          DFSK+EA KL
Sbjct: 785  MSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILDFSKIEADKL 844

Query: 525  ELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNN 584
             LE + F +  ++  +  + G  A AK L L + +DP+ P  ++GD++RL QIL NL  N
Sbjct: 845  VLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDPQTPARILGDQVRLRQILSNLIGN 904

Query: 585  AVKFTNQGEI--TIRGQ----------LLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQW 632
            A+KFT +GE+  T++G+          +L   +   ++ F++ DTGIG+  D+Q +LF+ 
Sbjct: 905  ALKFTEKGEVVLTVKGEPFDPAESYHTILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKS 964

Query: 633  FNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTASPAVAQ 692
            F+Q ++ST+R+YGGTGLGL IS+ LT++MGG + + S  G GS F F +     +PA+A+
Sbjct: 965  FSQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAPALAE 1024

Query: 693  DYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQE 752
                              ++ Q++G  +L+V+DNE NR    D   + GL      +G+ 
Sbjct: 1025 ----------------ADSVQQMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGES 1068

Query: 753  ALT-LLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALD 811
            AL         DA ++D+QMP ++G      +RQ    ++LPII +++  +AG  E ++ 
Sbjct: 1069 ALDWFARCPDLDAAILDLQMPNMDGITLAHHLRQFAQGKDLPIILLSSGLVAGADELSV- 1127

Query: 812  AGMNDHLTKPIKPDLLFQTLAH 833
                  L KP++  L+F +L +
Sbjct: 1128 --FQTVLNKPVRQSLIFDSLVN 1147



 Score =  112 bits (281), Expect = 4e-27
 Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 28/297 (9%)

Query: 677  FHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDL 736
            F  ++ L   +P   Q  L   V   +  P+   A +      ILL EDN +N++ AH +
Sbjct: 1149 FQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQPALQILLAEDNLVNQKVAHQM 1208

Query: 737  LTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQ-EYHRNLPII 795
            L + G  V +ANNGQE +  L    YD +LMD+QMP+++G  A R IRQ     R   I+
Sbjct: 1209 LNNLGYPVAIANNGQEVIDALEKKFYDLVLMDMQMPVMDGITACRHIRQTLPLERQPRIV 1268

Query: 796  AMTANAMAGDQEKALDAGMNDHLTKPIKPDLL---FQTLAHWIPPNSARE---------- 842
            AMTANAM GD+++ LDAGM+ +++KPI  + L    Q  +  I    ARE          
Sbjct: 1269 AMTANAMPGDRQECLDAGMDGYISKPISINQLRKVLQDTSALITSPQAREDIVTLGDKIT 1328

Query: 843  ------KKNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFGDRYSNFADQFR 896
                     P+   ++ L  +++  +   +      ++ L+  ++  +        ++  
Sbjct: 1329 VVEEQTMVKPTDVTESPLDPTAIAFLRDDL---CGGDLTLFGEMVACYCQESQKLIEELV 1385

Query: 897  TEQASDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSCRE-----HESPEMIDR 948
                 DD     R AHS+K ++A LG + +    QQLE +           P+++DR
Sbjct: 1386 QGLEVDDFAVIRRTAHSLKSSSASLGAQQLSTFCQQLEKNAGSGNLGLGSPPQLVDR 1442


>SYNE-PCC-01-001132 sll1672
          Length = 834

 Score =  240 bits (613), Expect = 1e-65
 Identities = 156/462 (33%), Positives = 258/462 (55%), Gaps = 42/462 (9%)

Query: 390 NTVFDKNNLPLLSRGTIQDV---TELQEAQ---ISLEHLNEKLEQRIQERTXXXXXXXXX 443
           N +F  N + +     +Q++    EL+ AQ   I +E+ NE L++++             
Sbjct: 304 NQLFTTNQILIEQNQKLQELYQQRELERAQREKILIEY-NESLQKQVD------------ 350

Query: 444 XXXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQT-DLTSQQRNYLQKVQYA 502
              AK +AE   KAKS F+ANMSHE+R+P+NAIIG S+L+L+T +L  +Q      +Q +
Sbjct: 351 LVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPMEQYENAGIIQRS 410

Query: 503 GEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPR 562
           GE          DFSK+EAGK  L +  F +  ++ +L  +L ++A  +G+ L F  D  
Sbjct: 411 GEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIELIFIRDHD 470

Query: 563 IPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTK------------- 609
           +P  + GD ++L QIL+NL +NA+KFT +GE+ +       E ++               
Sbjct: 471 LPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRNAEQQEVINPETSTEPKNKYW 530

Query: 610 LQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLES 669
           L F++ DTG G++  + S LF+ F+Q E+  + Q G TGLGLAI++   +LMGGDI + S
Sbjct: 531 LDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQEG-TGLGLAITRQFIKLMGGDINVSS 589

Query: 670 VVGQGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEIN 729
           VV QG+TF F++ +      ++++   ++  +L   P   Q + +     IL+V+D  +N
Sbjct: 590 VVDQGTTFSFSILVDLGEITLSREPNSAK-KVLALTPG--QPVYK-----ILVVDDKSVN 641

Query: 730 REFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYH 789
           R+    LL   G  ++ A+NGQEA+ L  S     I MD++MP+++GY+AT+ I+ Q   
Sbjct: 642 RQLLIKLLAPFGFEIEEASNGQEAIALWESWEPHLIFMDMRMPVMDGYEATKYIKGQVKG 701

Query: 790 RNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831
               ++A+TA+ +  ++   L AG +D L KP + + +F +L
Sbjct: 702 NATAVVALTASVLEEEKAIVLSAGCDDFLRKPFRENTIFDSL 743


>SYNE-PCC-01-001306 sll1905
          Length = 1014

 Score =  224 bits (571), Expect = 9e-61
 Identities = 174/522 (33%), Positives = 269/522 (51%), Gaps = 68/522 (13%)

Query: 393 FDKNNLPLLSRGTIQ-------DVTELQEAQISLEHLNEKLEQRIQERTXXXXXXXXXXX 445
           F+++ +P++   + Q       D+++ ++ ++ ++  + ++E+R++++            
Sbjct: 253 FERDYVPIMLGDSSQGHFWLYRDISQRKQVEM-IQGQSLEMERRMRQQLAEQNQELVAAT 311

Query: 446 XAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEX 505
            A   AE A ++KSEFLA MSHEIRTPMNAIIGM+ L+L TDLT+QQ+ + Q ++ +GE 
Sbjct: 312 TA---AEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLTTQQKYFAQTIRNSGET 368

Query: 506 XXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPP 565
                    DFSK+EAGKL+LE  PF + + +     ++   A  K LTL       IPP
Sbjct: 369 LLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPP 428

Query: 566 ILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLLKTENEQTKLQ--FSVTDTGIGLTP 623
            L GD  RL QIL+NL +NAVKFT  G++ +  +++  +  + + Q  F+V DTGIG+ P
Sbjct: 429 NLQGDVTRLRQILVNLLSNAVKFTEAGQVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAP 488

Query: 624 DQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLES---VVG-------- 672
           +QQ  LFQ F+QG +S +R++GGTGLGLAI   LT LMGG IW ES   VVG        
Sbjct: 489 NQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQI 548

Query: 673 -----QGSTFHFTVCLGTASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNE 727
                +GSTF+FTV L T  P+ A      R S+               G S+L+ + +E
Sbjct: 549 GQPTIEGSTFYFTVNL-TVLPSCAYSVHNLRHSL-------------FIGRSVLVADYDE 594

Query: 728 INREFAHDLLTSKGLRVQ------VANNGQEALTLLTSNTYDAILMDIQMPMLNG----- 776
                  +LL S  L+ +       A  G++  + LT   Y A+++    P   G     
Sbjct: 595 GRGTRMRNLLASWRLQAEQITFSSPAKLGEDLKSRLTQKNYGALILHCPYPEGRGKQFTD 654

Query: 777 YDATRAIRQQEYHRNLPIIAMTANAMA-GDQEKALDAGMNDHLTKPIKPDLLFQTLAHWI 835
           +D  +        +++P++  T   ++ G++       +   +  PI PD L  TL   +
Sbjct: 655 FDLGKITTWAPTEQDIPVLVATDIYLSPGERYSGDKPPVQAWIKSPINPDELENTLVDVL 714

Query: 836 ----PPN--SAREKKNP-----SSNLKADLSFSSMTGINQQI 866
               PP   S      P     SSNL   L+  ++  INQQ+
Sbjct: 715 GQTEPPTLVSTEAISGPLFPYSSSNLTILLAEDNL--INQQV 754



 Score =  108 bits (270), Expect = 8e-26
 Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 21/252 (8%)

Query: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778
           +ILL EDN IN++ A  LL   G  V V NNGQEAL+ L    YD +LMD++MP ++G  
Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLT 800

Query: 779 ATRAIRQQEYHRNLP-IIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL------ 831
           AT  IR+ +     P IIA+TA +M GD+E+ L +GMND+++KPI+ + L Q L      
Sbjct: 801 ATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAATA 860

Query: 832 ---------AHWIPPNSAREKKNPSSNLKADLSFSSMTGINQQIGMQY----IENVELYH 878
                    A     ++   K +PSS    D + +++  I+Q I         EN +L  
Sbjct: 861 LQSTSQDRMATVSCVSAFEAKPSPSSPCPEDPAGTTLPPIDQDIICSLRDLDRENGQLIL 920

Query: 879 RLLVK-FGDRYSNFADQFRTEQASDDPTAATRYAHSIKGAAALLGIENVHHTAQQLEDSC 937
           R ++  +         + +   A+ D    +  AH++  ++A LG   +   A+ LE+  
Sbjct: 921 REIIDIYCQTAPELLQRIKLAIANQDWGNLSSAAHTLGSSSANLGAVLLAQQAKTLENLT 980

Query: 938 REHESPEMIDRH 949
           R+ +S  M   H
Sbjct: 981 RQRDSRAMDPGH 992



 Score = 63.9 bits (154), Expect = 2e-12
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 704 AKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYD 763
           ++P    A  + E   IL+V+D + N     +LL  +G       +G EAL  +T    D
Sbjct: 4   SQPHPPIATFEPESFLILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPD 63

Query: 764 AILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIK 823
            IL+D+ MP ++G +    ++Q    R++P+I +TA+    D  +A   G  D++TKP  
Sbjct: 64  LILLDLMMPGMDGLEVCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFS 123

Query: 824 -PDLLFQTLAH 833
            P+LL +   H
Sbjct: 124 PPELLARVKTH 134


>SYNE-PCC-01-000800 sll1228
          Length = 633

 Score =  219 bits (557), Expect = 4e-59
 Identities = 145/412 (35%), Positives = 220/412 (53%), Gaps = 19/412 (4%)

Query: 447 AKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEXX 506
           AK  A+ A +AK+EFLA++SHE+RTP+NAIIG S+L+ +    +  R  L  +  +GE  
Sbjct: 152 AKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAPHRPTLDIINRSGEHL 211

Query: 507 XXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPI 566
                   + SK+EAG+  L +K      ++ NL ++  ++A+ K L L     P +P  
Sbjct: 212 LELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQLLLKVERSPEVPEW 271

Query: 567 LVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLL---KTENEQTK---LQFSVTDTGIG 620
           +  D  +L Q+LINL  NA+KFT QG +T++ + L   +T+  Q     L F V+DTG G
Sbjct: 272 IKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGASIWLHFLVSDTGPG 331

Query: 621 LTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFT 680
           +   +  +LF  F Q ET   +   G GLGL IS+   +LMGG I + S V QGS F F 
Sbjct: 332 IAAHEMDELFVPFAQTETGL-KSCQGNGLGLPISQKFVQLMGGQIQVRSKVDQGSAFFFA 390

Query: 681 VCLGT-ASPAVAQDYLVSRVSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTS 739
           + +   A+P    +             +VT          +L+V+D   +R     LLTS
Sbjct: 391 IPVQVMAAPKPTPE-----------TSAVTLPPLDQYNQKVLVVDDRPESRLLLRQLLTS 439

Query: 740 KGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTA 799
            G  VQ A NG+ A+ L  S     ILMD+QMP+L+G   T+ I+     ++  IIA+TA
Sbjct: 440 LGFVVQEAENGEMAIALWESWHPQVILMDMQMPVLDGRSTTQKIKASPQGQHTIIIALTA 499

Query: 800 NAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPPNSAREKKNPSSNLK 851
           +A  G++ + L AG +D L+KP +P+ L   LA  +      + + P+S L+
Sbjct: 500 SAFEGERAEILSAGCDDFLSKPFRPEELIALLAKHLAVALPSQGQPPASPLR 551


>SYNE-PCC-01-000891 sll1353
          Length = 998

 Score =  190 bits (482), Expect = 2e-50
 Identities = 109/265 (41%), Positives = 158/265 (59%), Gaps = 11/265 (4%)

Query: 422 LNEKLEQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSE 481
           +N++L   I+ER             AK  AE A + KSEFLAN+SHEIRTPMNAI+G  +
Sbjct: 568 INKQLAGEIEERQRIEIKLRE----AKESAELANRVKSEFLANISHEIRTPMNAILGFCD 623

Query: 482 LVLQTDLT-SQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNL 540
           L+LQ DL+ SQ + YL  +  + +          D SK+EAGKL +  +P  +  ++  +
Sbjct: 624 LLLQKDLSLSQTKKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREI 683

Query: 541 HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITI---- 596
             I   +AE+K L L   +D  +   +  D +RL QIL NL  NA+KFT +G++ I    
Sbjct: 684 KQIFDYKAESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGV 743

Query: 597 RGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKS 656
            G  ++++     L   VTDTGIG+ P+ Q+K+F  F Q +  ++R+YGGTGLGL I++ 
Sbjct: 744 EGIQVRSQGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRR 803

Query: 657 LTELMGGDIWLESVVGQGSTF--HF 679
           LT L+GG+I L S +G+GSTF  HF
Sbjct: 804 LTALLGGEISLSSRLGEGSTFILHF 828


>SYNE-PCC-01-001280 sll1871
          Length = 674

 Score =  181 bits (459), Expect = 9e-48
 Identities = 110/270 (40%), Positives = 160/270 (59%), Gaps = 5/270 (1%)

Query: 411 ELQEAQISLEHLNEKLEQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLANMSHEIR 470
           EL+ AQ  L   N  LE+++Q+RT            A   AE A   KS FLANMSHE+R
Sbjct: 391 ELELAQKQLAVANSCLEEKVQQRTEELENTVKALELASSEAEAANATKSIFLANMSHELR 450

Query: 471 TPMNAIIGMSELVLQT--DLTSQQR-NYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLELE 527
           TP+NAIIG SE++++   DL S++    L K+  +G+          D SK+EAGK+EL 
Sbjct: 451 TPLNAIIGYSEMLIEEAEDLDSEELVPDLDKILRSGKSLLALINDLLDISKIEAGKMELY 510

Query: 528 QKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVK 587
            + F+++E++  +   +    +     L   +      +  GD ++L Q ++NL +NA K
Sbjct: 511 LETFNLKELIAGILDTISPLLKNNNNKLEVEISLESEEVY-GDLIKLRQGILNLLSNASK 569

Query: 588 FTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGT 647
           FT  G I+   +  K + E+  L F V DTGIGLT +Q SKLFQ F Q ++ST+R+YGGT
Sbjct: 570 FTKDGIISFIVEEFKVD-EKDWLSFQVKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGT 628

Query: 648 GLGLAISKSLTELMGGDIWLESVVGQGSTF 677
           GLGLAI++   ++MGGDI+L S +G GS+F
Sbjct: 629 GLGLAITRKFCQMMGGDIYLTSEIGVGSSF 658


>SYNE-PCC-01-000295 sll0474
          Length = 806

 Score =  172 bits (436), Expect = 4e-45
 Identities = 137/442 (30%), Positives = 219/442 (49%), Gaps = 58/442 (13%)

Query: 266 QDVETVQLISNEIWRIARSRRLVKKLTESENRYRLAQAIAKIGNWELDYATNVLFWSPEV 325
           Q    +Q+   E   IA      +K  E   RY LA    ++  WE     +     P +
Sbjct: 258 QTFNQLQIYQREALEIAE-----RKYVEIAQRYELASQATRVWVWECQPKIHYFEVDPNL 312

Query: 326 FNL--FEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQCHLQK-YQPYDIVHRLLMPDGRI 382
                FE   +   G +      IH GDR +  +A +  L+          RL   +G I
Sbjct: 313 ITWLGFEQPLEPADGDF-----FIHLGDRPMFWQAIEQSLEDPTMELSTELRLEAANGEI 367

Query: 383 KYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLEHLNEKLEQRIQERTXXXXXXXX 442
            +   +     ++    +   GTI D+TE+++A+  L+  N+ L +              
Sbjct: 368 YHCLLRGQIHQEQGEAFVKIIGTIADITEIKKAEEQLKLSNKILAK-------------- 413

Query: 443 XXXXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKV 499
                      AT+ K EFLANMSHE+RTP+N+I+GM E +   +   L  +Q   L+ V
Sbjct: 414 -----------ATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIV 462

Query: 500 QYAGEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEA--KGLTLNF 557
           + +G           D SK+EAG+++L+  P SV  ++   HS+  +Q  A  K + L+ 
Sbjct: 463 ENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVN--HSLTFVQQFAIQKQINLSS 520

Query: 558 HLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQG-EITIRGQLLKT---ENEQT--KLQ 611
            + P +P +LV D+ RL Q+LINL NNA+KFT +G ++ ++  L+K    EN Q+  +L 
Sbjct: 521 EIIPNLPDVLV-DKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLS 579

Query: 612 FSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVV 671
           F+V DTGIG+  D+ + +F+ F Q +++ +R+Y GTGLGL++ K + EL GG + + S +
Sbjct: 580 FTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKL 639

Query: 672 GQGSTFHFTVCLGTASPAVAQD 693
            +GS F  T+      P V QD
Sbjct: 640 NEGSRFKITI------PCVFQD 655


>SYNE-PCC-01-001294 sll1888
          Length = 432

 Score =  149 bits (377), Expect = 3e-38
 Identities = 98/272 (36%), Positives = 150/272 (55%), Gaps = 12/272 (4%)

Query: 424 EKLEQRIQERTXXXXXXXXXX---XXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMS 480
           E L Q + E+T               A   AE A++ KSEFLA+ +HE+RTP+N IIG  
Sbjct: 157 EALLQELAEQTGTAIAHATLYQELTQATKAAEEASRLKSEFLASTTHELRTPLNGIIGFL 216

Query: 481 ELVLQ--TDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMG 538
            L+L    D  +++  ++++   +            D +K+EAG++ +E +     EV+ 
Sbjct: 217 RLILDDMADSEAEKHEFVEEAYQSALLLLNLINDILDLAKIEAGRVGIELEVVDFSEVLQ 276

Query: 539 NLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITI-- 596
              +    QA+ KGL+ N     + P ++ G++  L Q+++N+  NA+KFT++G IT+  
Sbjct: 277 ATENFALPQAQNKGLSFNLTAPNQGPLLVYGNQRWLLQVMLNIVGNAIKFTHEGGITVAV 336

Query: 597 ----RGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLA 652
               R  L +   +   L+ SV DTGIG++ +QQSKLF+ F Q + S S+ YGGTGLGL 
Sbjct: 337 EVMPRTVLWEGVQKPGLLKVSVGDTGIGVSLEQQSKLFKKFVQIDGSHSKAYGGTGLGLV 396

Query: 653 ISKSLTELMGGDIWLESV-VGQGSTFHFTVCL 683
           IS+ L E MGG +   S+  G GST  FTV L
Sbjct: 397 ISQKLVETMGGKVAFFSMGEGLGSTVTFTVLL 428


>SYNE-PCC-01-002778 slr1969
          Length = 750

 Score =  132 bits (332), Expect = 5e-33
 Identities = 115/416 (27%), Positives = 196/416 (47%), Gaps = 44/416 (10%)

Query: 427 EQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQ- 485
           E+R+ ERT              + A+ A   KS+F+ N+SHE+RTP+ +IIG+S  +L+ 
Sbjct: 355 EKRVIERTKELRDTL-------MAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRW 407

Query: 486 -----TDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLELEQKPFSVEEVMGN- 539
                +   ++Q+ YL  +Q  G+            S++E+G+  L  + FS+  +    
Sbjct: 408 FDHPASLPPAKQQYYLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTV 467

Query: 540 LHSILGIQAEAKGLTLNFHLDPRI---PPILVGDRLRLSQILINLGNNAVKFTNQGEITI 596
           +HS+LG+  + +   +N  LD +I         D+ RL QIL  L NNA+KFT   E T+
Sbjct: 468 IHSLLGVAIKQQ---INLELDYQINVGQDQFCADQERLDQILTQLLNNALKFT-PAEGTV 523

Query: 597 RGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKS 656
              +L+   E  +  F V DTGIG+   Q   LF+ F     S +  Y   G+GLA++K 
Sbjct: 524 ---ILRIWKESNQAIFQVEDTGIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQ 580

Query: 657 LTELMGGDIWLESVVGQGSTFHFTVCLGTASPAV---AQDYLVSRVSILEAKPSVTQAIT 713
           L EL GG I +ES  GQG+ F   +      P      QD L + +              
Sbjct: 581 LVELHGGYIEVESSPGQGTIFTTVIPQQNFPPTTKGQVQDKLDAAMPF------------ 628

Query: 714 QLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPM 773
               +S++++E +E       +LLT    +V    +   AL  +       I++D     
Sbjct: 629 ---NSSVIVIEQDEEIATLICELLTVANYQVIWLIDTTNALQQVELLQPGLIIVD--GDF 683

Query: 774 LNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQ 829
           ++  + TR I++      + +  ++ +  + + +     G++D+L KP++P+LL Q
Sbjct: 684 VDVTEVTRGIKKSRRISKVTVFLLSESLSSAEWQALSQKGIDDYLLKPLQPELLLQ 739


>SYNE-PCC-01-001509 slr0210
          Length = 417

 Score =  124 bits (311), Expect = 1e-30
 Identities = 87/228 (38%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 462 LANMSHEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSK 518
           L+++ HE RTP+ AIIG + ++   L   L  +Q  Y+Q    + E          D SK
Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSK 249

Query: 519 MEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQIL 578
           ++A   EL  +  +VE++   + S++  +A+ K L LN  +D  +    V D+ R  QIL
Sbjct: 250 IDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYV-DQRRWKQIL 308

Query: 579 INLGNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGET 638
           INL +N VKFT +G +T     L  +     L FSV DTGIG+ P+ Q  LFQ F Q   
Sbjct: 309 INLLSNGVKFTPKGSVT-----LAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISH 363

Query: 639 STSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTA 686
             S    GTGLGLA+S+ L +L GGDI L S  G GS F   + L T+
Sbjct: 364 PPSFAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPLKTS 411


>SYNE-PCC-01-001517 slr0222
          Length = 1178

 Score = 99.4 bits (246), Expect = 5e-23
 Identities = 87/285 (30%), Positives = 136/285 (47%), Gaps = 39/285 (13%)

Query: 407  QDVTELQEAQISLEHLNEKLEQRIQERTXXXXXXXXXXXXAKLVAEGATKAKSEFLANMS 466
            QD+T+++ A+I      E L   ++ER                      +AKS+F+  +S
Sbjct: 914  QDITDIKRAEI------ETLRSLVKEREL-------------------NEAKSQFVDIVS 948

Query: 467  HEIRTPMNAIIGMSELV---LQTDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGK 523
            HE RTP+ +IIG  EL+        T +++ Y+  +Q + +            S+ +A K
Sbjct: 949  HEFRTPLTSIIGFGELLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANK 1008

Query: 524  LELEQKPFSVEEVMGNL--HSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINL 581
            +E+E    ++  +  +L  +   G+ +E     LN+HL P     LV  RL L  IL N+
Sbjct: 1009 IEIELGNINLRNLANDLIENFSCGLGSE-HNFELNYHLKPD-EHSLVDVRL-LRHILENI 1065

Query: 582  GNNAVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTS 641
             +NA+K++  G  TI   + K E     L F V D GIG+    Q KLF+ F++   S  
Sbjct: 1066 LSNAIKYSAPGS-TITLDISKDEEH---LLFQVRDEGIGIPLQDQEKLFEAFHR--ASNV 1119

Query: 642  RQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLGTA 686
                GTGLGL+I K   E  GG I + S+ G+G+T    + L  A
Sbjct: 1120 GDIPGTGLGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPLNPA 1164


>SYNE-PCC-01-002788 slr1982
          Length = 123

 Score = 97.4 bits (241), Expect = 2e-22
 Identities = 49/114 (42%), Positives = 78/114 (68%)

Query: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777
           A +LLVEDNE+NR+     L  KG  V +A +G++A+T+  S +   ILMD+ +P+++G+
Sbjct: 5   AKVLLVEDNEMNRDMLSRRLIRKGYEVVIAVDGEQAVTMAISESPQLILMDMSLPIIDGW 64

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831
            AT+ I+      ++PIIA+TA+AMA D+E+A+ AG +D+ TKPI+   L Q +
Sbjct: 65  TATKQIKGHPDGAHIPIIALTAHAMASDRERAIAAGCDDYDTKPIEIKRLLQKM 118


>SYNE-PCC-01-000985 sll1475
          Length = 297

 Score = 88.6 bits (218), Expect = 8e-20
 Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 18/235 (7%)

Query: 455 TKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDLT-----SQQRNYLQKVQYAGEXXXXX 509
           ++ K+ F +  SHE RTP++  +  ++L+  +++       + RN L ++Q + +     
Sbjct: 66  SRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRN-LHRIQNSVKNMVQL 124

Query: 510 XXXXXDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVG 569
                  ++ EAGKLE       ++ +       + +    +    +F    +    LV 
Sbjct: 125 LDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSDQ-YYFDFICSAQDTKALVD 183

Query: 570 DRLRLSQILINLGNNAVKFT-NQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSK 628
           +RL +  IL NL +NA+K++   G+I I    L  ++EQ  + F VTD GIG++P+ Q +
Sbjct: 184 ERL-VRSILSNLLSNAIKYSPGGGQIKIA---LSLDSEQ--IIFEVTDQGIGISPEDQKQ 237

Query: 629 LFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCL 683
           +F+ F++G+    R   GTGLGL ++K   +L  G I L+S V QG+T   T+CL
Sbjct: 238 IFEPFHRGK--NVRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTT--VTICL 288


>SYNE-PCC-01-001690 slr0473
          Length = 748

 Score = 79.0 bits (193), Expect = 6e-17
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 10/220 (4%)

Query: 466 SHEIRTPMNAIIGMSELVLQTDLTSQQRNYLQKVQYAGEXXXXXXXXXXDFSKMEAGKLE 525
           SH+++ P+N +    +L+      +   +    + +A            D         +
Sbjct: 537 SHDLQEPLNQVSNYVQLLEMRYSEALDEDAKDFIDFAVTGVSLMQTLIDDILTYAKVDTQ 596

Query: 526 LEQKPFS-VEEVMGNLHSILGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNN 584
             Q  F+ V+EV+    + L  + E  G      ++    P ++ D+++L Q+  NL  N
Sbjct: 597 YAQLTFTDVQEVVDKALANLKQRIEESGA----EIEVGSMPAVMADQIQLMQVFQNLIAN 652

Query: 585 AVKFTNQGEITIRGQLLKTENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQY 644
            +KF       I+   +  + ++    F+V D GIG+ P    ++F  F +    T  +Y
Sbjct: 653 GIKFAGDKSPKIK---IWGDRQEDAWVFAVQDNGIGIDPQFFERIFVIFQR--LHTRDEY 707

Query: 645 GGTGLGLAISKSLTELMGGDIWLESVVGQGSTFHFTVCLG 684
            GTG+GLAI K + E   G IWLES  G+GSTF+F++ +G
Sbjct: 708 KGTGMGLAICKKIIEGHQGQIWLESNPGEGSTFYFSIPIG 747


>SYNE-PCC-01-002086 slr1042
          Length = 147

 Score = 68.9 bits (167), Expect = 7e-14
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778
           ++LLVED+   RE    +L   G +V +A +G EAL  L + + D +++DI MP +NGY+
Sbjct: 29  AVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYE 88

Query: 779 ATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831
             R I+     +N+P+I  ++     D+   +  G + ++ KP +P  L  T+
Sbjct: 89  VCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTI 141


>SYNE-PCC-01-001133 sll1673
          Length = 452

 Score = 68.9 bits (167), Expect = 7e-14
 Identities = 39/111 (35%), Positives = 64/111 (57%)

Query: 713 TQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMP 772
           T  +  +ILLV+D   N +   DLL + G  V+   +G+ AL  L     D IL+DI+MP
Sbjct: 4   TDEKKGNILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMP 63

Query: 773 MLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIK 823
            ++GY     I+++E  +++PII ++A     D+ KA + G  D++TKP +
Sbjct: 64  DMDGYQVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQ 114


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 37/112 (33%), Positives = 62/112 (55%)

Query: 716 EGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLN 775
           E   +LLV+D+        D L  +G +V  A NG+EAL LLT+   D I+ DI MP ++
Sbjct: 6   ENYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMD 65

Query: 776 GYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLL 827
           GY     +RQ      +P++ ++A   + ++ K L+ G + ++ KP +P+ L
Sbjct: 66  GYAFIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEEL 117


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 716 EGASILLVEDNEINREFAHDLLTSKG-LRVQVANNGQEALTLLTSNTYDAILMDIQMPML 774
           E  S+LLV+D    RE     L   G  +V +A N  EA   L  +    ++ DI MP +
Sbjct: 54  EPISLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQV 113

Query: 775 NGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHW 834
           +GY   + +R+    ++LP++ +TA  M GD+ +    G +  L+KP  PD L   + + 
Sbjct: 114 DGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNL 173

Query: 835 IPPNSAREKKNPSSNLKADLSFSSMTGINQQIG 867
           +    A      S + K    +  +  + +QIG
Sbjct: 174 LARQQASSDAG-SESAKLQEIYQEIRALKEQIG 205


>HINF-KW2-01-000816 HI0837  response regulator (cpxR)
          Length = 227

 Score = 65.9 bits (159), Expect = 6e-13
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 11/145 (7%)

Query: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777
           + +LLV+D+    E    LL  +G  V+ ANNG EAL  L + +Y  +L+D+ MP LNG 
Sbjct: 2   SKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKL-NESYKLVLLDVMMPKLNGI 60

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPP 837
           +  + IR+     N+P++ +TA     D+   L+ G +D L KP     L   +   +  
Sbjct: 61  ETLKEIRKVS---NVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAIL-- 115

Query: 838 NSAREKKNPSSNLK--ADLSFSSMT 860
              R   +PS+N+     LSF  +T
Sbjct: 116 ---RRSASPSNNISNVEILSFDGIT 137


>SYNE-PCC-01-002489 slr1588
          Length = 421

 Score = 62.4 bits (150), Expect = 6e-12
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTY--DAILMDIQMPMLN 775
           ++IL+VED  I RE   + L+ +  ++  A NG  AL LL S     D I+ D+ MP ++
Sbjct: 2   STILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEMD 61

Query: 776 GYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831
           G+    A+++      +P I +TA     D  K +++G +D+L KP K + L   +
Sbjct: 62  GHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAV 117


>HINF-KW2-01-001671 HI1708  transcriptional regulatory protein
           (ygiX)
          Length = 221

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           ILL+ED+ +        LT  G  V    +G+  +  LTS  YDA+++D+ +P L+G + 
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821
            +  R    H+++P++ +TA     ++ K L +G +D+L KP
Sbjct: 63  LQQWRSN--HQDVPVLILTARDTLDERVKGLQSGADDYLCKP 102


>SYNE-PCC-01-002618 slr1760
          Length = 315

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 15/221 (6%)

Query: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777
           A IL+V+D+   R      L  +G RV++A NG+EALT       + +L+D  MP+++G+
Sbjct: 12  AKILVVDDDGFMRMQLRVYLQKEGHRVELATNGEEALTKFAEIKPEVVLLDAVMPVMDGF 71

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWIPP 837
              +A+ +   + +  ++ +T        ++A +AG  D++TKPI   +L Q +   +  
Sbjct: 72  ACCQALMKIYQNPSPLVLMITGLDDEASVDRAFEAGAIDYVTKPIHWAVLRQRVKRLLYQ 131

Query: 838 NSAREK-KNPSSNLKADLSFSSMTGINQQIGMQYIENVELYHRLLVKFG--------DRY 888
           N  + + ++ +  L+       +T +  +  ++   + E    +  ++         D +
Sbjct: 132 NRLQHQLESVNQMLERLAKVDQLTQLANRRQLELFLDTEWSEAIREQYPFSILLCDIDYF 191

Query: 889 SNFADQFRTEQASDD-----PTAATRYAHSIKGAAALLGIE 924
            N+ D +   Q  DD       A TR  H  K  AA  G E
Sbjct: 192 KNYNDHY-GHQGGDDCLQQVAKALTRVVHRPKDLAARYGGE 231


>HINF-KW2-01-000863 HI0884  aerobic respiration control protein ARCA
           (arcA)
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 11/148 (7%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           IL+VED  + R     +  ++G  V  A NG E   +L ++  + ++MDI +P  NG   
Sbjct: 6   ILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLL 65

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP--------DLLFQTL 831
            R +R++    +LP+I +T      D+   L+ G +D+LTKP  P        +LL + +
Sbjct: 66  ARELREE---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRAM 122

Query: 832 AHWIPPNSAREKKNPSSNLKADLSFSSM 859
            H    N+   +    +  K DL+  S+
Sbjct: 123 PHQEKENTFGREFYRFNGWKLDLNSHSL 150


>SYNE-PCC-01-002672 slr1837
          Length = 234

 Score = 58.9 bits (141), Expect = 7e-11
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 718 ASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGY 777
           A+ILLV+D     E     L  +G  + VA+ G+  L +  +  YD +++D  +P ++G 
Sbjct: 2   ANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGL 61

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIK 823
           +  R IR   +  + P++ +TA     D+   LDAG +D+L KP +
Sbjct: 62  EICRQIRILGH--STPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFE 105


>SYNE-PCC-01-002033 slr0947
          Length = 234

 Score = 58.5 bits (140), Expect = 9e-11
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 722 LVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDATR 781
           +V+D    R      L+  G  V  A +G+EA+     +  D +++D+ MP L+GY   +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 782 AIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP 824
            +R++    ++PII +TA     D+   L+ G +D++ KP  P
Sbjct: 61  ELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSP 100


>SYNE-PCC-01-000414 sll0649
          Length = 245

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 31/106 (29%), Positives = 54/106 (50%)

Query: 719 SILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYD 778
           +IL+VED++   +   + L  +     V N+G+  L +      D I++D+ +P L+G +
Sbjct: 13  NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72

Query: 779 ATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKP 824
               IRQQ   ++  I+ +TA     D+   L  G +D+L KP  P
Sbjct: 73  VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSP 118


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 56.6 bits (135), Expect = 3e-10
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 27/222 (12%)

Query: 715 LEGASILLVEDNEINREFAHDLLTSKGLRVQV--ANNGQEALTLLTSNTYDAILMDIQMP 772
           +E   I L+ED ++ R+   D LT +     V  A NG+  L ++     D +++DI +P
Sbjct: 1   MEKIRIALIEDEDLIRQGLQDALTMEPSFEWVGEAANGRLGLVMMQQTRPDVVIIDIGLP 60

Query: 773 MLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLA 832
            +NG D T+ +++   +    ++ +T N        A  AG + +  K  + +LL + + 
Sbjct: 61  DMNGIDVTQQLKKGPLNCQCRVVILTLNDQEETVLAAFSAGADAYCMKDSRTELLIEAIQ 120

Query: 833 ------HWIPPNSAR---------EKKNPSSNLKADLSFSSMTGINQ------QIGMQYI 871
                  WI P  AR         E   PSS  +  LS+    G+ +      Q+ +   
Sbjct: 121 ATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSY----GLTERELEVLQLIVDGC 176

Query: 872 ENVELYHRLLVKFGDRYSNFADQFRTEQASDDPTAATRYAHS 913
            N ++  +L +  G   ++  +      A+D   AA R   S
Sbjct: 177 SNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRS 218


>SYNE-PCC-01-001461 slr0115
          Length = 241

 Score = 56.2 bits (134), Expect = 4e-10
 Identities = 28/102 (27%), Positives = 55/102 (53%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           IL+++D+    +     L   G  VQ A +G +   L      D I++D+ +P ++G+  
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821
            + +R+ E   ++P++ +TA     D+ +  D+G +D+LTKP
Sbjct: 64  CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKP 105


>SYNE-PCC-01-001437 slr0081
          Length = 262

 Score = 56.2 bits (134), Expect = 4e-10
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 699 VSILEAKPSVTQAITQLEGASILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLT 758
           ++ LEA P   Q         IL+VED    RE     L  +G  V   ++G++AL LL 
Sbjct: 12  MATLEAPPHSLQHQEIPPSHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQ 71

Query: 759 SNT-------YDAILMDIQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALD 811
             +        D I++DI +P +NG D  R++R      N PI+ ++A     ++   L+
Sbjct: 72  EFSEDPGQAAVDLIILDIMLPQVNGLDVCRSLRFG--GDNTPILIVSAKGSEMEKVTGLE 129

Query: 812 AGMNDHLTKP 821
            G +D++TKP
Sbjct: 130 VGADDYITKP 139


>HINF-KW2-01-001345 HI1379  phosphate regulon transcriptional
           regulatory protein (phoB)
          Length = 231

 Score = 55.8 bits (133), Expect = 6e-10
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           IL+VED    RE     L+ K   V  A++ + A+  +  N    IL+D  +P  +G   
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKENP-KLILLDWMLPGRSGIQF 63

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLL 827
            + I++QE +  +PII +TA +   D    L+AG +D++TKP  P +L
Sbjct: 64  IQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQIL 111


>SYNE-PCC-01-002486 slr1584
          Length = 234

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           ILLVED+    E   + L+ +   V +A +   A    +   YD +++D+ +P L+G   
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGITL 62

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828
            +  R   Y   +PI+ MTA     D+   LDAG +D++ KP+    LF
Sbjct: 63  CQKWRSHSY--LMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELF 109


>SYNE-PCC-01-000242 sll0396
          Length = 224

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779
           +L+VE+ E    F    L  +G  V VA +G +  T       D I+++  +P ++G + 
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLEL 64

Query: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828
            R +R  E    +PII +TA     ++   LDAG +D++ KP   D  F
Sbjct: 65  CRRLR--EMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFF 111


>SYNE-PCC-01-000523 sll0797
          Length = 234

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSN--TYDAILMDIQMPMLNGY 777
           ILLVED          +L S+   V    +G +A   L +    Y   ++D  +P L+G 
Sbjct: 3   ILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSGL 62

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821
           +  + +R Q    +LP++ +TA     ++ + LDAG +D+LTKP
Sbjct: 63  ELCQKLRTQG--NSLPVLMLTALGEPENRVEGLDAGADDYLTKP 104


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVAN--NGQEALTLLTSNTYDAILMDIQMPMLNGY 777
           +LL++D+ + R     L+        VA+  +G E +++    + D I++D+ M  L+G 
Sbjct: 7   VLLIDDHPLMRRGIKQLVELDDNFEVVADVSSGTEGISVALQTSPDVIILDLNMKGLSGL 66

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTL 831
           D  + +R +       I+ +T +    D    +DAG + +L K  +PD L + +
Sbjct: 67  DTLKGLRAEGVDAR--ILILTVSDAKNDIYTLIDAGADGYLLKDTEPDTLLEQI 118


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 712 ITQLEGASILLVEDNEINREFAHDLLTSKGLRVQV---ANNGQEALTLLTSNTYDAILMD 768
           ++Q     +L+ +D+ I R+    ++ ++   +QV   A NG++A+ L   +  D  LMD
Sbjct: 1   MSQATTIRVLIADDHAIFRQGLATII-NRDPDMQVIAQAENGEQAIALFEEHQPDVTLMD 59

Query: 769 IQMPMLNGYDATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLF 828
           ++MP + G  A  AI      +   II +T      D  + L AG   +L K  +PD L 
Sbjct: 60  LRMPEVEGVAAISAI--CAIVKFARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELL 117

Query: 829 QTL------AHWIPPN 838
             +        +IPP+
Sbjct: 118 NAIRTVHRGQKYIPPD 133


>SYNE-PCC-01-000518 sll0789
          Length = 232

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSN--TYDAILMDIQMPMLNGY 777
           +LLVED           L  +   V    +G  A + L      Y   + D  +P L+G 
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSGL 62

Query: 778 DATRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKP 821
           +  + +R Q    +LPI+ +TA     D+ + LDAG +D+L KP
Sbjct: 63  ELCQKLRGQR--SSLPILMLTAKDQIADRVEGLDAGADDYLIKP 104


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,590
Number of Sequences: 78
Number of extensions: 3765
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 38
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 55
length of query: 950
length of database: 48,235
effective HSP length: 71
effective length of query: 879
effective length of database: 42,697
effective search space: 37530663
effective search space used: 37530663
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SYNE-PCC-01-002951 ssl0564 
         (89 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SYNE-PCC-01-002951 ssl0564                                            182   2e-49
SYNE-PCC-01-002731 slr1909                                             67   9e-15
SYNE-PCC-01-002635 slr1783                                             60   2e-12
SYNE-PCC-01-001160 sll1708                                             52   4e-10
HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator pr...    49   3e-09
SYNE-PCC-01-000511 sll0782                                             48   6e-09
SYNE-PCC-01-001575 slr0312                                             47   1e-08
SYNE-PCC-01-000608 sll0921                                             47   1e-08
SYNE-PCC-01-001075 sll1592                                             46   2e-08
SYNE-PCC-01-001039 sll1544                                             42   5e-07

>SYNE-PCC-01-002951 ssl0564
          Length = 89

 Score =  182 bits (462), Expect = 2e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MLAGNYQPPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRV 60
          MLAGNYQPPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRV
Sbjct: 1  MLAGNYQPPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRV 60

Query: 61 ELVRWALQWGKVCLNDVNCCILPGQGSGS 89
          ELVRWALQWGKVCLNDVNCCILPGQGSGS
Sbjct: 61 ELVRWALQWGKVCLNDVNCCILPGQGSGS 89


>SYNE-PCC-01-002731 slr1909
          Length = 213

 Score = 67.4 bits (163), Expect = 9e-15
 Identities = 29/57 (50%), Positives = 44/57 (77%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68
           L+  E +++ LVA GL N+E+++ L++S+RTV++HVSN+L KT   NR EL RWA+Q
Sbjct: 153 LTPTETKVIQLVAQGLANREIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQ 209


>SYNE-PCC-01-002635 slr1783
          Length = 282

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 15  RELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70
           RE  +LDLV+ GL N+E++ +L+ S R V+ +VS + TKT T +R ELVR+ALQ G
Sbjct: 224 REQSVLDLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHG 279


>SYNE-PCC-01-001160 sll1708
          Length = 226

 Score = 52.0 bits (123), Expect = 4e-10
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)

Query: 5   NYQPP--------ASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNT 56
           N +PP        +SLS+RE+++L L+  G +NQE+++ L +S  T+  HV  I+ K + 
Sbjct: 151 NLKPPVPEGQADVSSLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSV 210

Query: 57  ENRVELVRWALQWGKV 72
           ++RV+    AL+ G V
Sbjct: 211 DDRVQAAVIALRSGLV 226


>HINF-KW2-01-000704 HI0726  nitrate/nitrite response regulator
           protein (narP)
          Length = 208

 Score = 49.3 bits (116), Expect = 3e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 8   PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRV 60
           P  SL+DRE+ +L  +A GL+N++++ +L IS+ TV  H+ N+L K N  +RV
Sbjct: 145 PLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRV 197


>SYNE-PCC-01-000511 sll0782
          Length = 369

 Score = 48.1 bits (113), Expect = 6e-09
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70
           LS+RE EI+ L+A GL +++++E L IS+ TV  HV+  L K N +NR + +  A   G
Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQG 367


>SYNE-PCC-01-001575 slr0312
          Length = 209

 Score = 47.4 bits (111), Expect = 1e-08
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWGK 71
           LS+RELE+L  +A G++N +++  L I + TV +HV+ IL K +  +R + V  A++ G 
Sbjct: 147 LSERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGI 206

Query: 72  VCL 74
           V L
Sbjct: 207 VSL 209


>SYNE-PCC-01-000608 sll0921
          Length = 222

 Score = 47.4 bits (111), Expect = 1e-08
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWGK 71
           L++RELE+L L+  G +N +++E+L I+  TV  HV NIL K    +R +    A++ G 
Sbjct: 161 LTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSGL 220

Query: 72  V 72
           V
Sbjct: 221 V 221


>SYNE-PCC-01-001075 sll1592
          Length = 226

 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQ 68
           L+ RELEIL LVA G +NQE+++ L I+  TV  HV  IL K    +R +    A++
Sbjct: 164 LTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIE 220


>SYNE-PCC-01-001039 sll1544
          Length = 228

 Score = 41.6 bits (96), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 12  LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWG 70
           L+ RE+ IL LVA G TN E+ + L ++  TV  +V  I+ K N  +R       L+ G
Sbjct: 167 LTQREVAILRLVAEGKTNSEIGQELHLASSTVREYVQTIMRKLNARDRTSAAIAGLREG 225


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8808
Number of Sequences: 78
Number of extensions: 344
Number of successful extensions: 14
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 48,235
effective HSP length: 49
effective length of query: 40
effective length of database: 44,413
effective search space:  1776520
effective search space used:  1776520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 86 (37.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MJAN-DSM-01-000260 MJ0255  conserved hypothetical protein
{Xanthobacter sp.}
         (251 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJAN-DSM-01-000260 MJ0255  conserved hypothetical protein {Xanth...   503   e-145

>MJAN-DSM-01-000260 MJ0255  conserved hypothetical protein
           {Xanthobacter sp.}
          Length = 251

 Score =  503 bits (1294), Expect = e-145
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MKAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK 60
           MKAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK
Sbjct: 1   MKAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEK 60

Query: 61  INYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERKNAI 120
           INYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERKNAI
Sbjct: 61  INYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERKNAI 120

Query: 121 KRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFD 180
           KRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFD
Sbjct: 121 KRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFD 180

Query: 181 KEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLR 240
           KEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLR
Sbjct: 181 KEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLR 240

Query: 241 RGLRGDTFGKV 251
           RGLRGDTFGKV
Sbjct: 241 RGLRGDTFGKV 251


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.142    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,157
Number of Sequences: 78
Number of extensions: 1113
Number of successful extensions: 10
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 1
length of query: 251
length of database: 48,235
effective HSP length: 61
effective length of query: 190
effective length of database: 43,477
effective search space:  8260630
effective search space used:  8260630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MJAN-DSM-01-001076 MJ1053  hypothetical protein
         (163 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJAN-DSM-01-001076 MJ1053  hypothetical protein                       225   5e-62

>MJAN-DSM-01-001076 MJ1053  hypothetical protein
          Length = 163

 Score =  225 bits (574), Expect = 5e-62
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MIPLVPTSKTEIDKLEHVLILGTLFRPEILELIKDPIEKVTWVDSLAIAAGALAREKAGY 60
           MIPLVPTSKTEIDKLEHVLILGTLFRPEILELIKDPIEKVTWVDSLAIAAGALAREKAGY
Sbjct: 1   MIPLVPTSKTEIDKLEHVLILGTLFRPEILELIKDPIEKVTWVDSLAIAAGALAREKAGY 60

Query: 61  TIREIADELGRTEQTIRKHLKGETKAGKLVRETYEMMKRGELNIEEVEKFLEAVVR 116
           TIREIADELGRTEQTIRKHLKGETKAGKLVRETYEMMKRGELNIEEVEKFLEAVVR
Sbjct: 61  TIREIADELGRTEQTIRKHLKGETKAGKLVRETYEMMKRGELNIEEVEKFLEAVVR 116


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.317    0.137    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,022
Number of Sequences: 78
Number of extensions: 396
Number of successful extensions: 10
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 1
length of query: 163
length of database: 48,235
effective HSP length: 57
effective length of query: 106
effective length of database: 43,789
effective search space:  4641634
effective search space used:  4641634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 89 (38.9 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MJAN-DSM-01-001277 MJ1254  hypothetical protein
         (469 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJAN-DSM-01-001277 MJ1254  hypothetical protein                       682   0.0  

>MJAN-DSM-01-001277 MJ1254  hypothetical protein
          Length = 469

 Score =  682 bits (1759), Expect = 0.0
 Identities = 358/444 (80%), Positives = 358/444 (80%)

Query: 1   MIAFLFYKCFAKNYKINFLYKNSSYINTNTLWLKVIYIKTKDVIIXXXXXXVAFNVSSAY 60
           MIAFLFYKCFAKNYKINFLYKNSSYINTNTLWLKVIYIKTKDVII      VAFNVSSAY
Sbjct: 1   MIAFLFYKCFAKNYKINFLYKNSSYINTNTLWLKVIYIKTKDVIIFLLLFFVAFNVSSAY 60

Query: 61  VIKNLNIDCIVTPDDTINETISFVIYNNEDKNLSHISYTIPQTIRNFTINASAGVKGYSA 120
           VIKNLNIDCIVTPDDTINETISFVIYNNEDKNLSHISYTIPQTIRNFTINASAGVKGYSA
Sbjct: 61  VIKNLNIDCIVTPDDTINETISFVIYNNEDKNLSHISYTIPQTIRNFTINASAGVKGYSA 120

Query: 121 LYNEGVTEIAIEFEKPIPKGGYTNITINCFVNDAIWTKNGIKQLILSFPITSKNATIKIV 180
           LYNEGVTEIAIEFEKPIPKGGYTNITINCFVNDAIWTKNGIKQLILSFPITSKNATIKIV
Sbjct: 121 LYNEGVTEIAIEFEKPIPKGGYTNITINCFVNDAIWTKNGIKQLILSFPITSKNATIKIV 180

Query: 181 LPPGAVILSPQGTLLVTPSGYKITTDGKHQIIVWDLSLNKEITFTITVKYTFISYPGQNI 240
           LPPGAVILSPQGTLLVTPSGYKITTDGKHQIIVWDLSLNKEITFTITVKYTFISYPGQNI
Sbjct: 181 LPPGAVILSPQGTLLVTPSGYKITTDGKHQIIVWDLSLNKEITFTITVKYTFISYPGQNI 240

Query: 241 IEQPAINNNLKYXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXX 300
           IEQPAINNNLKY                V              NI               
Sbjct: 241 IEQPAINNNLKYLLIIAIFGTAIFGGLFVKEKISKRKIIERTKNIKNELTSLKNKLKEKE 300

Query: 301 XXXXXXXXXXXDLEDXXXXXXXXXXXXDEIISVLNERISEYESQIQKLLDENIIYKEKIE 360
                      DLED            DEIISVLNERISEYESQIQKLLDENIIYKEKIE
Sbjct: 301 EEIKNLAIKIKDLEDKLSKANKNLLNKDEIISVLNERISEYESQIQKLLDENIIYKEKIE 360

Query: 361 SLNKYIETLKKENDKLKDKVRELSDIAKKYMEEKRGVLWSFLTXXXXXXXXXXXXHGHIT 420
           SLNKYIETLKKENDKLKDKVRELSDIAKKYMEEKRGVLWSFLT            HGHIT
Sbjct: 361 SLNKYIETLKKENDKLKDKVRELSDIAKKYMEEKRGVLWSFLTEDEKIIIDLIKKHGHIT 420

Query: 421 QKEIVEITGMSKPKVSRIISELED 444
           QKEIVEITGMSKPKVSRIISELED
Sbjct: 421 QKEIVEITGMSKPKVSRIISELED 444


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.317    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,869
Number of Sequences: 78
Number of extensions: 1537
Number of successful extensions: 42
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 2
length of query: 469
length of database: 48,235
effective HSP length: 66
effective length of query: 403
effective length of database: 43,087
effective search space: 17364061
effective search space used: 17364061
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil
protein, putative structural protein involved in cytosceleton
[Mycoplasma pneumoniae]
         (1033 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...  1669   0.0  
MGEN-G37-01-000335 MG328  conserved hypothetical protein              178   6e-47
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)        71   2e-14
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036       69   9e-14
SYNE-PCC-01-000727 sll1120                                             53   4e-09
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443     52   7e-09
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054     49   1e-07
SYNE-PCC-01-001071 sll1583                                             46   7e-07

>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil protein,
            putative structural protein involved in cytosceleton
            [Mycoplasma pneumoniae]
          Length = 1033

 Score = 1669 bits (4321), Expect = 0.0
 Identities = 889/1033 (86%), Positives = 889/1033 (86%)

Query: 1    MEFLEQEGQEVLTKEIKAGFCEITPSSITEQTTKPQLDETQLVDEYVHTKELETTPIPIS 60
            MEFLEQEGQEVLTKEIKAGFCEITPSSITEQTTKPQLDETQLVDEYVHTKELETTPIPIS
Sbjct: 1    MEFLEQEGQEVLTKEIKAGFCEITPSSITEQTTKPQLDETQLVDEYVHTKELETTPIPIS 60

Query: 61   FATKEVLFEEVFNTPSTQQVDESVLVNEYIELTQQIKNASEQVSSNHTHKFSVATEPAAT 120
            FATKEVLFEEVFNTPSTQQVDESVLVNEYIELTQQIKNASEQVSSNHTHKFSVATEPAAT
Sbjct: 61   FATKEVLFEEVFNTPSTQQVDESVLVNEYIELTQQIKNASEQVSSNHTHKFSVATEPAAT 120

Query: 121  KAVSETMLLDDYVEMVEQDVQAQTALPQAALDPTVSLTFSSPIDSNAILVYPEMKVPHVF 180
            KAVSETMLLDDYVEMVEQDVQAQTALPQAALDPTVSLTFSSPIDSNAILVYPEMKVPHVF
Sbjct: 121  KAVSETMLLDDYVEMVEQDVQAQTALPQAALDPTVSLTFSSPIDSNAILVYPEMKVPHVF 180

Query: 181  DTVAPTTTTVPLDQTQLLDELVEVPVLTHTVTPAPLQPKAAPTNFALDQTQLVDELVTVP 240
            DTVAPTTTTVPLDQTQLLDELVEVPVLTHTVTPAPLQPKAAPTNFALDQTQLVDELVTVP
Sbjct: 181  DTVAPTTTTVPLDQTQLLDELVEVPVLTHTVTPAPLQPKAAPTNFALDQTQLVDELVTVP 240

Query: 241  LTHTLVNEXXXXXXXXXXXXXXEHSFSITTVDKANLTNALSQTVVIKPAEDSAHQSAVLD 300
            LTHTLVNE              EHSFSITTVDKANLTNALSQTVVIKPAEDSAHQSAVLD
Sbjct: 241  LTHTLVNESAPVTPVVVTSPAAEHSFSITTVDKANLTNALSQTVVIKPAEDSAHQSAVLD 300

Query: 301  KEIATKXXXXXXXXXXXXXXXXXXETPPVTYMGVEEYKLLXXXXXXXXXXXXSFEMTLLQ 360
            KEIATK                  ETPPVTYMGVEEYKLL            SFEMTLLQ
Sbjct: 301  KEIATKQAQLQQLQAQIELRQAQLETPPVTYMGVEEYKLLPVQDVVPVQPTVSFEMTLLQ 360

Query: 361  EQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERIXXXXXXXXXXXXXXXXXXXKLFK 420
            EQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERI                   KLFK
Sbjct: 361  EQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERIELLQNQNTNLTQELNELQQKLFK 420

Query: 421  SQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFD 480
            SQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFV          DKHSLTLQIEQYKFD
Sbjct: 421  SQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFD 480

Query: 481  SKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDE 540
            SKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDE
Sbjct: 481  SKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDE 540

Query: 541  NTKYRNLLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALVKELDQVKAT 600
            NTKYRNLLKQYELMRADSD                         RHNEALVKELDQVKAT
Sbjct: 541  NTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKAT 600

Query: 601  NFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEK 660
            NFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEK
Sbjct: 601  NFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEK 660

Query: 661  TAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENX 720
            TAFDS              FDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDEN 
Sbjct: 661  TAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENL 720

Query: 721  XXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQ 780
                        SYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQ
Sbjct: 721  TQLQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQ 780

Query: 781  NELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKA 840
            NELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKA
Sbjct: 781  NELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKA 840

Query: 841  ELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQ 900
            ELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQ
Sbjct: 841  ELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQ 900

Query: 901  SLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNEL 960
            SLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNEL
Sbjct: 901  SLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNEL 960

Query: 961  NSSQTHEIKTKQDETXXXXXXXXXXXXXXXXXXXRLKKRDIVIENKEDALGKLSKKERIQ 1020
            NSSQTHEIKTKQDET                   RLKKRDIVIENKEDALGKLSKKERIQ
Sbjct: 961  NSSQTHEIKTKQDETVKEVIIVEKEIPVPPEKKPRLKKRDIVIENKEDALGKLSKKERIQ 1020

Query: 1021 AYAERLAKINGKQ 1033
            AYAERLAKINGKQ
Sbjct: 1021 AYAERLAKINGKQ 1033


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score =  178 bits (452), Expect = 6e-47
 Identities = 140/467 (29%), Positives = 216/467 (46%), Gaps = 67/467 (14%)

Query: 603  ELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNS---ELQNQLNV------- 652
            E+    +  +Q+K +L  +  +L       ++ +  L + N+   ELQNQL         
Sbjct: 321  EVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTAREANQR 380

Query: 653  LEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNH 712
            L+   +E     +                      Q      +N++  DKL   +  LN 
Sbjct: 381  LDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNL 440

Query: 713  LQQSDENXXXXXXXXXXXXXSYNKLQD-EANHTQQQFHQAQNELDAAHQQLALFKQNNEE 771
              Q   +              + + +D + N+T+  F + +  LD     L +    N++
Sbjct: 441  DYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTI---QNQQ 497

Query: 772  LTDKCSNIQNELHDLNRVKTNW-----ENLNTEHNLL---QDKYAQ-------------- 809
            L DK + ++    + + + TN      + L    NL    QDK A               
Sbjct: 498  LQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNEKIND 557

Query: 810  -QKEQMQHEHSN--LAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSAYEL 866
             + E    E+SN  LA++QA+HE+LQESY K+K +  +++   LN+AN QYQDLLSA+E 
Sbjct: 558  LEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEE 617

Query: 867  LQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVS 926
              S   K KQ L   +    E  QL Q++++              L+ A   LQ TP  S
Sbjct: 618  TNSELEKAKQSLSASDS---ENNQLKQQINS--------------LENAKKELQFTPVTS 660

Query: 927  DELLEQFNQVQLEKQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETXXXXXXXXXXX 986
            DE L++   +++EK++L  +N AL ++LQYFN+++++QT EIK   DE            
Sbjct: 661  DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDE-----------D 709

Query: 987  XXXXXXXXRLKKRDIVIENKEDALGKLSKKERIQAYAERLAKINGKQ 1033
                    R+KKRD VI+NK+D L KLSKKERIQAYAERLAKIN  +
Sbjct: 710  KPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE 756



 Score =  144 bits (364), Expect = 1e-36
 Identities = 110/463 (23%), Positives = 205/463 (44%), Gaps = 43/463 (9%)

Query: 431 LEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFDSKKHQEQLAL 490
           L +ENR L + LQN     N L+            +K  L+ Q++  K  S   Q+QLAL
Sbjct: 297 LLQENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLAL 356

Query: 491 IPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQ 550
           +P L ++IN L+ ++++ ++ NQRL L+E+EN+FLK E+K+L +   NDEN KY +LL Q
Sbjct: 357 LPVLNNQINELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQ 416

Query: 551 YELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALVKELDQVKATNFELGLAAQG 610
           YEL+  +++                           N+ L+ E++  ++ + +       
Sbjct: 417 YELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNS 476

Query: 611 FEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSXXXXX 670
           FE+QK              +A +E +  L I N +LQ+++  LE  ++EK+  ++     
Sbjct: 477 FEEQK--------------KALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVN 522

Query: 671 XXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXX 730
                       ++ Q++LAT ++ N +L +K+   E +L+  + S+             
Sbjct: 523 LQQQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEIL 582

Query: 731 XXSYNKLQ-----------DEANHTQQQ----FHQAQNELDAAHQQLALFKQNNEELTDK 775
             SY KL+           ++AN   Q     F +  +EL+ A Q L+     N +L  +
Sbjct: 583 QESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQ 642

Query: 776 CSNIQN--------------ELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNL 821
            ++++N               L +L  +K   E L  E+  LQ++     +   ++   +
Sbjct: 643 INSLENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEI 702

Query: 822 AQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSAY 864
            +   E + ++    ++K     IQ  +   A    ++ + AY
Sbjct: 703 KEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAY 745



 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 22/101 (21%)

Query: 1   MEFLEQEGQEVLTKEIKAGFCEITPSSITEQTTKPQLDETQLVDEYVHTKELETTPIPIS 60
           M F E + Q VLTKEIK GF E+ PS IT +  K ++                       
Sbjct: 109 MAFQEVDDQSVLTKEIKTGFQELKPSVITAEDDKDEIKPE-------------------- 148

Query: 61  FATKEVLFEEVFNTPSTQQVDESVLVNEYIELTQQIKNASE 101
            ATK+V FEE+FN PS ++++E+      I  T ++K   +
Sbjct: 149 -ATKQVSFEELFNQPS-EEINETKKPEVQIFSTDKVKEPEQ 187


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score = 70.9 bits (172), Expect = 2e-14
 Identities = 141/620 (22%), Positives = 252/620 (40%), Gaps = 108/620 (17%)

Query: 419 FKSQNNSLL-LARLEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQY 477
           F  + ++L+ + +L++EN    +HL++   + N+              +  +L  +I ++
Sbjct: 339 FNLRQSALIDINKLQQENELFAKHLEH---QQNEFEQKQSDSLLKLETEYKALQHKINEF 395

Query: 478 KFDSKKHQEQLAL----IPSLRSEINSLETEVISLKQTNQRLS--LIERENNFLKTEIKQ 531
           K +S    E+L      +   R EI++L T+  SL+  +QR S  L++ + N +K   + 
Sbjct: 396 KNESATKSEELLNQERELFEKRREIDTLLTQA-SLEYEHQRESSQLLKDKQNEVKQHFQN 454

Query: 532 LRETKLNDENTKYRNLLKQYELMRADS--DXXXXXXXXXXXXXXXXXXXXXXXXXRHNEA 589
           L   K   E  K RNLL Q + + +++                            + NE 
Sbjct: 455 LEYAK--KELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENEL 512

Query: 590 LV--KELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQ 647
           L   K+L Q +A +FE  L A+    Q+ + E K++ L  S    E+  + L     ++ 
Sbjct: 513 LFFEKQLKQHQA-DFENELEAK----QQELFEAKHA-LERSFIKLEDKEKDLNTKAQQIA 566

Query: 648 NQLNVLEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASE 707
           N+ + L+ T K K+A                 F+L L Q +    +Q+ Q L  +    E
Sbjct: 567 NEFSQLK-TDKSKSA----------------DFELML-QNEYENLQQEKQKLFQERTYFE 608

Query: 708 TQL----NHLQQSDENXXXXXXXXXXXXXSYN--KLQDEANHTQ---------------- 745
                  N LQQ  E              S+   +L ++  H +                
Sbjct: 609 RNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKL 668

Query: 746 QQFHQAQNEL--DAAHQQLAL-FKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNL 802
           Q F Q       + A +++A+ FK+   E T+K   + N++++   ++ +   LN   N 
Sbjct: 669 QDFSQTSLNASKNLAEREMAIKFKEKEIEATEK--QLLNDVNNAEVIQADLAQLNQSLNQ 726

Query: 803 LQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLS 862
            + +    K+++   H++  +   E+EL       ++  L E+Q    N+    YQ+   
Sbjct: 727 ERSELQNAKQRIADFHNDSLKKLNEYEL------SLQKRLQELQTLEANQKQHSYQN--Q 778

Query: 863 AYELLQSNHNKLKQELQVLNQVNLEKQQ------LAQKLHNTHQSLSQTHAELTQLQAAY 916
           AY   +   +KL +E Q    +NL K+Q      + Q+L + HQ+L+   AEL +     
Sbjct: 779 AY--FEGELDKLNREKQAF--LNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHEL 834

Query: 917 NN-----------LQ---ATPPVSDELLEQFNQVQLEKQRLLQQNLA--------LVHEL 954
           NN           LQ   AT   + +L++      LEKQR   +N+A           +L
Sbjct: 835 NNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQL 894

Query: 955 QYFNELNSSQTHEIKTKQDE 974
           Q   EL   Q  E   K+ E
Sbjct: 895 QKIYELTKKQESEQTQKETE 914



 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 116/556 (20%), Positives = 214/556 (38%), Gaps = 93/556 (16%)

Query: 472 LQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLK----------QTNQRLSLIERE 521
           LQ E  K  SK   +++     L  EI SLE E+ +LK          + +++++ +E +
Sbjct: 23  LQSEYEKNRSKTDVDKIE--NQLLKEIKSLEDELKNLKGLKNQAEDNPELDKKINHLEVD 80

Query: 522 NNFLKTEIK--QLRETKLNDENTKYRNLLKQY--ELMRADSDXXXXXXXXXXXXXXXXXX 577
            N L  E K  Q ++  + D+ ++  NL + Y  EL R   +                  
Sbjct: 81  LNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQAN 140

Query: 578 XXXXXXXRHNEALVKELDQ-VKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENV 636
                   H   L++  +Q +   N ++    Q      V L Q  +  +         +
Sbjct: 141 YHNKLNDFHR--LIENQNQTINRLNQKIN-GNQNLIDNNVALLQNPNITVEKKNYLLNVI 197

Query: 637 QALGITNSELQNQLNVL----EFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATF 692
             L     +L+NQ  +L    E T++E  + D+                 ++ Q Q+  F
Sbjct: 198 DQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYE----------NIDQNQIQ-F 246

Query: 693 KQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQ 752
           K Q Q+  D+L   E ++   +Q                   + L+ + +      +   
Sbjct: 247 KHQYQTYRDELSQLERKIQLTKQE-------------LVDKESALRVKIDDADFYINARL 293

Query: 753 NELDAAHQQLA----LFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNT---------- 798
            ELD   +QL+    + KQN + + DK   +  E   LN  K  + NL            
Sbjct: 294 AELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQ 353

Query: 799 EHNLLQDKYA--QQKEQMQHEHSNLAQIQAEHELLQESYNKVKAE--------LNEIQI- 847
           + N L  K+   QQ E  Q +  +L +++ E++ LQ   N+ K E        LN+ +  
Sbjct: 354 QENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQEREL 413

Query: 848 --------TNLNEANAQYQDLLSAYELLQSNHNKLKQELQVL----NQVNLEKQQLAQKL 895
                   T L +A+ +Y+    + +LL+   N++KQ  Q L     +++ E+  L Q+ 
Sbjct: 414 FEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQK 473

Query: 896 HNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQ 955
               +++ Q   ++ Q +     L         L+++  Q Q E + L  +     H+  
Sbjct: 474 KVDSEAIFQLKEKVAQERKELEELY--------LVKKQKQDQKENELLFFEKQLKQHQAD 525

Query: 956 YFNELNSSQTHEIKTK 971
           + NEL + Q    + K
Sbjct: 526 FENELEAKQQELFEAK 541



 Score = 48.9 bits (115), Expect = 8e-08
 Identities = 115/625 (18%), Positives = 229/625 (36%), Gaps = 63/625 (10%)

Query: 360  QEQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERIXXXXXXXXXXXXXXXXXXXKLF 419
            Q +LDK  + N  ++++L+ +  + LQ  +   +Q ++                     F
Sbjct: 944  QRELDKLAEKNNQVKLELDNRF-QALQNQKQDTVQAQLELEREQHQLNLEQTA------F 996

Query: 420  KSQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKF 479
               N SLL  R +   +    H +  L + NQ   +          D+     +I  ++F
Sbjct: 997  NQANESLLKQREQLTKKIQAFHYE--LKKRNQFLALKGKRLFAKEQDQQRKDQEIN-WRF 1053

Query: 480  DSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLND 539
              +  +E      + + E+  LE    SL Q+N  L   ER+   L T+   L + + N 
Sbjct: 1054 -KQFEKEYTDFDEAKKRELEELEKIRRSLSQSNVEL---ERKREKLATDFTNLNKVQHNT 1109

Query: 540  E--NTKYRNLLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALV------ 591
            +    +  + ++Q+ L R +                              EAL       
Sbjct: 1110 QINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEF 1169

Query: 592  --------KELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAE--ENVQALGI 641
                    KEL Q       L L    FE+Q   +E++   +    Q  +  +  +AL  
Sbjct: 1170 DKRDEQQKKELQQAT-----LQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQ 1224

Query: 642  TNSELQNQLNVLEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTD 701
               EL+N L+     +K K  +                 +L  T++QL    ++++S+  
Sbjct: 1225 KLVELKN-LSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQL---DKKHRSIFA 1280

Query: 702  KLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELD----A 757
            +L      L   ++                   N+L  E    ++  H   NE +     
Sbjct: 1281 RLTKFANDLRFEKKQ-------LLKAQRIVDDKNRLLKE---NERNLHFLSNETERKRAV 1330

Query: 758  AHQQLALFKQNNEELTDKC----SNIQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQ 813
               Q++ F++  ++ TD        ++ +  +L ++    E   T+ N    K+++Q+E+
Sbjct: 1331 LEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREE 1390

Query: 814  MQHEHSNLAQIQAEHELLQESYN-KVKA--ELNEIQITNLNEANAQYQDLLSAYELLQSN 870
             +++   L ++Q   +    S N K KA  E+       + E N Q ++       L   
Sbjct: 1391 FENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEY 1450

Query: 871  HNKLKQELQ-VLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDEL 929
              K++ E++   +QV L  ++  +K +      ++ + E   +      L+A     D+ 
Sbjct: 1451 FRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQD 1510

Query: 930  LEQFNQVQLEKQRLLQQNLALVHEL 954
            ++  N+ + E   LL +N  L   L
Sbjct: 1511 IDSTNKQRKELNELLNENKLLQQSL 1535



 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 116/578 (20%), Positives = 214/578 (37%), Gaps = 109/578 (18%)

Query: 422  QNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFDS 481
            QN +     L++ NR  +  L     +  +++ +          DKH   L ++Q + D 
Sbjct: 776  QNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLS-----DKHQ-ALNMQQAELDR 829

Query: 482  KKHQEQLALIPSLRSEINSLETEVISLKQTN-----QRLSLIERENNFLKTEIKQLRE-T 535
            K H+   A + +  ++  SL+ ++ ++K+T      +R +L+E++  F +      R  +
Sbjct: 830  KTHELNNAFL-NHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWS 888

Query: 536  KLNDENTKYRNLLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALVKELD 595
                +  K   L K+ E  +   +                         R  EA  +ELD
Sbjct: 889  NKTSQLQKIYELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELD 948

Query: 596  QVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEF 655
            ++   N ++ L      Q   +  QK  ++ A L+   E            Q+QLN+   
Sbjct: 949  KLAEKNNQVKLELDNRFQ--ALQNQKQDTVQAQLELERE------------QHQLNL--- 991

Query: 656  THKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQ 715
               E+TAF+                     Q   +  KQ+ Q LT K+ A   +L   ++
Sbjct: 992  ---EQTAFN---------------------QANESLLKQREQ-LTKKIQAFHYEL---KK 1023

Query: 716  SDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQ--------LALFKQ 767
             ++                 +   E N   +QF +   + D A ++             Q
Sbjct: 1024 RNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQ 1083

Query: 768  NNEELTDKCSNIQNELHDLNRVKTNWE------NLNTEHNLLQDKYAQQKEQMQHEH--- 818
            +N EL  K   +  +  +LN+V+ N +      N      LL+ K  Q+     +     
Sbjct: 1084 SNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAF 1143

Query: 819  --SNLAQIQAEHELLQESYNKVKAEL---NEIQITNLNEANAQYQ---------DLLSAY 864
                L    +  +L +E+    K E    +E Q   L +A  Q +         D+    
Sbjct: 1144 LIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQR 1203

Query: 865  EL--LQSNHNKLKQELQVLNQVNLEKQQLAQ-------KLHNTHQSLSQTHAELTQLQAA 915
            +L  +++   KL  E + LNQ  +E + L+Q       K   + Q L Q +  L  L+  
Sbjct: 1204 QLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLK-- 1261

Query: 916  YNNLQATPPVSDE--------LLEQFNQVQLEKQRLLQ 945
              NL+ T    D+        L +  N ++ EK++LL+
Sbjct: 1262 -ENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLK 1298


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 68.6 bits (166), Expect = 9e-14
 Identities = 112/575 (19%), Positives = 214/575 (37%), Gaps = 55/575 (9%)

Query: 419  FKSQNNSLLLARLEEENRTLKQ------HLQNNLPEANQLNFVXXXXXXXXXXDKHSLTL 472
            +K+  N L   +LE   + LK+      HL+    +  +              +  SL  
Sbjct: 1094 YKNLKNELE-TKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEK 1152

Query: 473  QIEQYKFDSKKHQEQLALIP-SLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQ 531
            + E      KK++EQ+A        EI+ L  E+ S +Q N+    I+++N+ L+ E+K 
Sbjct: 1153 EHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENES---IKKKNDELEGEVKA 1209

Query: 532  LRETKLNDENTKYRNLLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALV 591
            ++ T     N      LK+ E+   D+                                +
Sbjct: 1210 MKSTSEEQSN------LKKSEI---DALNLQIKELKKKNETNEASLLESIKSVESETVKI 1260

Query: 592  KELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLN 651
            KEL      NF+    ++  E +    E KNS  L   + +E+  + L    +EL+ QL 
Sbjct: 1261 KELQD--ECNFKEKEVSE-LEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLE 1317

Query: 652  VLEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLN 711
             +    K K   +S               +    +EQL   K + Q            LN
Sbjct: 1318 KITNLSKAKEKSESELSRLKKTSSE----ERKNAEEQLEKLKNEIQIKNQAFEKERKLLN 1373

Query: 712  HLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEE 771
                                   N L+DE    Q +      E+D    +L     +N+E
Sbjct: 1374 E---------GSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDE 1424

Query: 772  LTDKCSNIQNELHD-----LNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQA 826
            L ++  N    L D      +++  N E L +     +      KEQ++    + A+++ 
Sbjct: 1425 LLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEE 1484

Query: 827  EHELLQESYNKVKAEL---NEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQEL----Q 879
              + L+E  +K KAEL    E+     +   +   +L S+ E ++ +  KL+Q      +
Sbjct: 1485 GLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEE 1544

Query: 880  VLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLE 939
             +  +  EK  L  +++ + + + +  ++L     + + L+        + ++ N  Q +
Sbjct: 1545 DIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELET-------VKQELNNAQEK 1597

Query: 940  KQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDE 974
             +   ++N  L  +L+        +  EIK+ Q+E
Sbjct: 1598 IRINAEENTVLKSKLEDIERELKDKQAEIKSNQEE 1632



 Score = 55.8 bits (133), Expect = 6e-10
 Identities = 121/616 (19%), Positives = 237/616 (38%), Gaps = 73/616 (11%)

Query: 431  LEEENRTLKQHLQN---NLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFDSKKHQEQ 487
            L+E    L+  L+N   +L E  QL  V          DK + T  +E YK    K ++ 
Sbjct: 788  LKENFSILETELKNVRDSLDEMTQLRDVLETK------DKENQTALLE-YKSTIHKQED- 839

Query: 488  LALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYR-N 546
                 S+++    LET +   K+    ++ + ++   L  E++ + E   N +  K + N
Sbjct: 840  -----SIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSN 894

Query: 547  LLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXX-XXXXRHNEALVKELDQVKAT-NFEL 604
            +  Q E      D                          +  E + KEL + K+      
Sbjct: 895  VNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHD 954

Query: 605  GLAAQGFEQQKVV------LEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHK 658
             L A+  E+ K +      ++ +N SL+   +A EE+     I  S LQN+++ +    K
Sbjct: 955  NLVAKLTEKLKSLANNYKDMQAENESLI---KAVEESKNESSIQLSNLQNKIDSMS-QEK 1010

Query: 659  EKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDE 718
            E    +                DL  T+E++ +   ++ S  D+    E+Q++ L++  E
Sbjct: 1011 ENFQIERGSIEKNIEQLKKTISDLEQTKEEIIS---KSDSSKDEY---ESQISLLKEKLE 1064

Query: 719  NXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSN 778
                                DE  +   +  + + EL+A   +LA +K    EL  K   
Sbjct: 1065 TATTA--------------NDENVNKISELTKTREELEA---ELAAYKNLKNELETKLET 1107

Query: 779  IQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKV 838
             +  L +   VK N E+L  E   L+ +  + K+Q+    +NL  ++ EHE L     K 
Sbjct: 1108 SEKALKE---VKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKY 1164

Query: 839  KAELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNT 898
            + ++   +    NE  +Q  D +++ +  Q N +  K+  ++  +V   K    ++ +  
Sbjct: 1165 EEQIANKE-RQYNEEISQLNDEITSTQ--QENESIKKKNDELEGEVKAMKSTSEEQSNLK 1221

Query: 899  HQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFN 958
               +   + ++ +L+      +A+      LLE    V+ E  +        + ELQ   
Sbjct: 1222 KSEIDALNLQIKELKKKNETNEAS------LLESIKSVESETVK--------IKELQDEC 1267

Query: 959  ELNSSQTHEIKTKQDETXXXXXXXXXXXXXXXXXXXRLKKRDIVIENKEDALGKLSK-KE 1017
                 +  E++ K   +                    L  +   ++ + + +  LSK KE
Sbjct: 1268 NFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKE 1327

Query: 1018 RIQAYAERLAKINGKQ 1033
            + ++   RL K + ++
Sbjct: 1328 KSESELSRLKKTSSEE 1343



 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 103/558 (18%), Positives = 208/558 (37%), Gaps = 89/558 (15%)

Query: 432  EEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFDSKKHQEQLALI 491
            ++EN ++K+       E   +             +  +L LQI++ K   KK++   A  
Sbjct: 1190 QQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELK---KKNETNEA-- 1244

Query: 492  PSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLN---DENTKYRNLL 548
             SL   I S+E+E + +K+       ++ E NF + E+ +L E KL    D+N+KY  L 
Sbjct: 1245 -SLLESIKSVESETVKIKE-------LQDECNFKEKEVSEL-EDKLKASEDKNSKYLELQ 1295

Query: 549  KQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXR-------HNEALVKELDQVKATN 601
            K+ E ++ + D                                  +E      +Q++   
Sbjct: 1296 KESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLK 1355

Query: 602  FELGLAAQGFEQQKVVLEQKNSSL--------------LASLQAAEE-----------NV 636
             E+ +  Q FE+++ +L + +S++              L  LQ   E            +
Sbjct: 1356 NEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSEL 1415

Query: 637  QALGITNSEL----QNQLNVLE---FTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQL 689
            + + ++N EL    QN +  L+    ++K+K   +                DL   +EQL
Sbjct: 1416 EKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKR---DLESLKEQL 1472

Query: 690  ATFKQQNQSLTDKLMASETQLN----HLQQSDE-----------NXXXXXXXXXXXXXSY 734
               ++    + + L   E + +     L++S E           N             S 
Sbjct: 1473 RAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSD 1532

Query: 735  NKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWE 794
             KL+      ++     Q+E      ++   +++ EEL  K         +L  VK    
Sbjct: 1533 EKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELN 1592

Query: 795  N------LNTEHN-LLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQI 847
            N      +N E N +L+ K    + +++ + + +   Q E ELL     +++ EL+  Q 
Sbjct: 1593 NAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQ- 1651

Query: 848  TNLNEANAQYQDLLSAYELLQSNHNKLKQELQVL----NQVNLEKQQLAQKLHNTHQSLS 903
                +A    ++  +     Q   ++L ++  +L    N +  ++Q   +      ++  
Sbjct: 1652 ---QKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTD 1708

Query: 904  QTHAELTQLQAAYNNLQA 921
                E+ +L    +NL+A
Sbjct: 1709 SQRQEIEKLAKELDNLKA 1726


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 26/268 (9%)

Query: 686 QEQLATFKQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQ 745
           +E L     +++ LT +LM    Q    Q   E                   Q +    Q
Sbjct: 719 EELLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARLS---------QQQTQINQ 769

Query: 746 QQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTN--WENLNTEHNLL 803
           QQ +Q Q +L    Q LAL +Q+   L  + ++ Q +L  L   +T+  W+ +  +   +
Sbjct: 770 QQINQ-QQKLAELQQNLALLQQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQIQIRTV 828

Query: 804 QDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSA 863
           + +Y +Q + ++    +L  +Q   + L+E   + + ++ + Q  +L  A  Q Q  ++ 
Sbjct: 829 EAEYQRQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIAL 888

Query: 864 YEL---LQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQ 920
            E+   +Q+   +L +  + L     E+ +L          L+Q  ++  + Q  +  LQ
Sbjct: 889 AEMNGAIQTTEAQLAKLSEKLGSTKQERDRL-------ETQLNQLRSQQQEQQWQWEKLQ 941

Query: 921 ATPPVSDELLEQFNQVQLEKQRLLQQNL 948
                  E L Q  Q QLE    L+Q+L
Sbjct: 942 TNQQEYQENLTQL-QTQLE---ALEQDL 965



 Score = 52.0 bits (123), Expect = 9e-09
 Identities = 71/360 (19%), Positives = 135/360 (37%), Gaps = 52/360 (14%)

Query: 591  VKELDQVKATNFELGLA----AQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSEL 646
            ++++ QV+  N EL L     ++   QQ + + Q+        +  E ++  L    S+ 
Sbjct: 708  LQDIQQVQGRNEELLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARL----SQQ 763

Query: 647  QNQLNVLEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMAS 706
            Q Q+N  +   ++K A                  +L+L Q+ L   +QQ  S   +L A 
Sbjct: 764  QTQINQQQINQQQKLA--------------ELQQNLALLQQSLPPLEQQLASAQQQLTAL 809

Query: 707  ETQLNHLQQS---------DENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDA 757
            ET   H Q           +                   LQ+ +   +++  QAQ ++  
Sbjct: 810  ETSQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQ 869

Query: 758  AHQQLALFKQNNEELTDKCSNIQNEL-----------HDLNRVKTNWENLNTEHNLLQDK 806
               Q     Q  E+L    + +   +             L   K   + L T+ N L+ +
Sbjct: 870  HQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGSTKQERDRLETQLNQLRSQ 929

Query: 807  YAQQKEQ-------MQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQD 859
              +Q+ Q        Q    NL Q+Q + E L++       E+  +Q  + +EAN  + +
Sbjct: 930  QQEQQWQWEKLQTNQQEYQENLTQLQTQLEALEQDLPDPWPEIPLLQ--DRDEANLDFAN 987

Query: 860  LLSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQ-KLHNTHQSLSQTHAELTQLQAAYNN 918
            +L   E    N  K  + ++ +N + L++ +  + +L    + L     E T+L     N
Sbjct: 988  ILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELLLRIEN 1047


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 52.4 bits (124), Expect = 7e-09
 Identities = 88/460 (19%), Positives = 191/460 (41%), Gaps = 55/460 (11%)

Query: 481  SKKHQEQLALIPSLRSEINSLETEVISLKQTNQR-LSLIERENNFLKTEIKQLR--ETKL 537
            +KK  EQ   I  L++++  +E++   L++ NQ+ ++ +E   + L  E + LR  E+ L
Sbjct: 863  TKKFNEQ---INKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLL 919

Query: 538  NDENTKYRNLLKQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXX--XXRHNEALVKELD 595
            N   T    L KQ++ + ++ D                           R  EA +++L 
Sbjct: 920  NRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLH 979

Query: 596  --------QVKATNFELGLAAQG---FEQQKVVLEQKNSSLLASLQAAEENVQALGITNS 644
                    Q+   N ++          ++ K+ LE +   L   + + EE +++     S
Sbjct: 980  SKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLS 1039

Query: 645  ELQNQLNVLEFTHKEKTAFDSXXXXXXXXXXXXXXFDLSLTQEQLATFKQQNQSLTDKLM 704
              +  L++   T ++    +                DL    E    FK++  +L ++L 
Sbjct: 1040 SSEEDLDIKLVTLEK----NCNIAMSRLQSLVTENSDLRSKNEN---FKKEKAALNNQLK 1092

Query: 705  ASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQLAL 764
              E++L  +++  +N             +++K +D+A     +  +   EL     QL  
Sbjct: 1093 NKESELLKMKEKIDNHKKELA-------TFSKQRDDA---VSEHGKITAELKETRIQLTE 1142

Query: 765  FKQNNEELTDKCSNIQNELHDLNRVKTN--WENLN-TEHNLLQDKYAQQKEQMQHEHSNL 821
            +K N +++ ++ SN Q E  +  + K N   E+LN ++   L+ + +Q+    Q+ +  +
Sbjct: 1143 YKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRI 1202

Query: 822  AQIQAEHELLQESYNKVKAELNEI-QITNLNEANAQYQDLLSAYELLQSNHNKLKQELQV 880
                        S N V+  ++   + T+ ++     +D++  Y  LQ    ++ + L+ 
Sbjct: 1203 ------------SGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLE- 1249

Query: 881  LNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQ 920
             N++  EK+ L  +L  T   L+ +  E  +++A    L+
Sbjct: 1250 -NEIE-EKKNLISRLRFTETRLASSSFEDQKIKAQMKKLK 1287



 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 32/252 (12%)

Query: 746  QQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHD-----------LNRVKTNWE 794
            +Q ++ +N+L     +    ++ N++  ++  N Q+ L+            LNRVKT+ E
Sbjct: 868  EQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSE 927

Query: 795  NLNTEHNLLQDKYAQQKEQMQHEHSNLAQ-IQAEHEL---LQESYNKVKAELNEIQITNL 850
             L  +     D    +K+++  E   +AQ ++  H+    LQE+  + +A L ++   N 
Sbjct: 928  TLQKQF----DDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKN- 982

Query: 851  NEANAQYQDL-------LSAYELLQSNHNKLKQELQ----VLNQVNLEKQQLAQKLHNTH 899
            NE   Q  DL        S+  L++ +  KL+ E++    V+N    E +    KL ++ 
Sbjct: 983  NELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSE 1042

Query: 900  QSLSQTHAELTQ-LQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFN 958
            + L      L +    A + LQ+    + +L  +    + EK  L  Q      EL    
Sbjct: 1043 EDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMK 1102

Query: 959  ELNSSQTHEIKT 970
            E   +   E+ T
Sbjct: 1103 EKIDNHKKELAT 1114


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 116/592 (19%), Positives = 225/592 (38%), Gaps = 97/592 (16%)

Query: 421 SQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFD 480
           + +N +LL       R +  +L+  L +  Q N            +   +  ++ +YK  
Sbjct: 174 TSSNDVLLEAFTNTQR-ICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSC 232

Query: 481 SKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLND- 539
            +  QE++A   +L S  N+ ET++  L+Q +Q   L +R  +  KT I+ L +T +ND 
Sbjct: 233 LETLQERIA---TLTSHKNNQETKLKDLRQNHQ---LYQRRISGFKTSIENLNKT-INDL 285

Query: 540 -ENTKYRNLL-----KQYELMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALVKE 593
            +N K  +       K+ E ++ + D                         ++ E ++K 
Sbjct: 286 GKNKKEADAELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMG----KNREEMIKS 341

Query: 594 LDQVKATN------------------FELGLAAQ----------GFEQQKVVLEQKNSSL 625
           ++   + +                  FE  L             G     V L     ++
Sbjct: 342 IENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETM 401

Query: 626 LAS-LQAAEENV-QALGITNSELQNQLNVLEFTHKEKT-AFDSXXXXXXXXXXXXXXFDL 682
           L    +  +EN+ Q +  +  E+   +N L  T K                       ++
Sbjct: 402 LKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEM 461

Query: 683 SLTQEQLATFKQQNQ----SLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQ 738
           + T+++L     Q      SL + + A + ++    + +E                N++ 
Sbjct: 462 NNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQII 521

Query: 739 DEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNE----------LHDLN- 787
                 + Q+     +L+A + +++      + LT+K  N+ NE          L++LN 
Sbjct: 522 SSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNI 581

Query: 788 RVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQI----QAEHELLQESYNKVKAELN 843
             K+N+EN  +  N +      + + ++     L +I    Q +H    E++ K     N
Sbjct: 582 TTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQK-----N 636

Query: 844 EIQITNLNEANAQYQDLLSAYEL-LQSNHNKLKQEL--------QVLNQVNLEKQQLAQK 894
             Q+  LN    Q    L A+EL L+  +  LK  L        + L+ V   KQQ+   
Sbjct: 637 NEQLQKLNVEVVQ----LKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVI-V 691

Query: 895 LHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQ 946
           L +  Q ++   AE  +LQ   +NL++   V+  L +   +VQ +K+ L Q+
Sbjct: 692 LKSEKQDIT---AEKLELQ---DNLESLEEVTKNLQQ---KVQSQKRELEQK 734


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 17/196 (8%)

Query: 688 QLATFKQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEA------ 741
           QL +   +NQ L+D       QL++++Q+                     Q++A      
Sbjct: 167 QLNSLVTRNQQLSD-------QLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQA 219

Query: 742 NHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHN 801
           +  ++Q  Q   E D   Q+L   +Q ++    +  N+Q  L  L + +  W+    E +
Sbjct: 220 SQWEEQVRQLTAERDQVQQELQTARQQSQSAQTQAENLQAALDRLGQQEEQWQG---ERS 276

Query: 802 LLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLL 861
            L  K  Q +E  +      A+++ + E  Q   +++K E  E Q   L  A  Q   L 
Sbjct: 277 QLTAKLNQLEEAQKELALANAELKVKLETTQAEGDRLKTEKKE-QAAALQSAQGQVTQLQ 335

Query: 862 SAYELLQSNHNKLKQE 877
                LQ N  K K E
Sbjct: 336 QELAALQENLAKAKGE 351



 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 37/276 (13%)

Query: 681 DLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNK-LQD 739
           DL   Q  L     +   LT+   A E  +  LQ    +               N+ L  
Sbjct: 83  DLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKFVGLQKLNQELLQ 142

Query: 740 EANHTQQQFHQAQNELDAAHQQLALFKQ---NNEELTDKCSNIQNELHDLNRVKTNWENL 796
           E  +   +  QA NE+     +L         N++L+D+ S ++      N+ K   + L
Sbjct: 143 ENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQ-----NQAKAIEQRL 197

Query: 797 NTEHNLLQDKYAQQKEQMQHEHSN----LAQIQAEHELLQESYN---------KVKAELN 843
            ++  L Q ++ Q++ Q   + S     + Q+ AE + +Q+            + +AE  
Sbjct: 198 ASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELQTARQQSQSAQTQAENL 257

Query: 844 EIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLN---------------QVNLEK 888
           +  +  L +   Q+Q   S      +   + ++EL + N               ++  EK
Sbjct: 258 QAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQAEGDRLKTEK 317

Query: 889 QQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPP 924
           ++ A  L +    ++Q   EL  LQ      +  PP
Sbjct: 318 KEQAAALQSAQGQVTQLQQELAALQENLAKAKGEPP 353



 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 64/272 (23%), Positives = 105/272 (38%), Gaps = 24/272 (8%)

Query: 702 KLMASETQLNHLQQSDENXXXXXXXXXXXXXSYNKLQDEANHTQQQFHQAQNELDAAHQQ 761
           KL   E  L  +Q S EN             +  K+     H    +   Q+E     Q+
Sbjct: 76  KLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQHQLAHYDDIQSEKFVGLQK 135

Query: 762 LAL-FKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQDK--YAQQKEQMQHEH 818
           L     Q N  L+D+     NE+ +         +L T +  L D+  Y +Q +    E 
Sbjct: 136 LNQELLQENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQLSDQLSYVEQNQAKAIEQ 195

Query: 819 SNLAQI---QAEHELLQESYN-----------KVKAELNEIQITNLNEANAQYQDLLSAY 864
              +Q    Q  HE  Q  +N           ++ AE +++Q   L  A  Q Q   +  
Sbjct: 196 RLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQ-QELQTARQQSQSAQTQA 254

Query: 865 ELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQAT-P 923
           E LQ+  ++L Q+ +   Q   E+ QL  KL+   ++  +      +L+      QA   
Sbjct: 255 ENLQAALDRLGQQEE---QWQGERSQLTAKLNQLEEAQKELALANAELKVKLETTQAEGD 311

Query: 924 PVSDELLEQFNQVQLEKQRL--LQQNLALVHE 953
            +  E  EQ   +Q  + ++  LQQ LA + E
Sbjct: 312 RLKTEKKEQAAALQSAQGQVTQLQQELAALQE 343


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.309    0.125    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,107
Number of Sequences: 78
Number of extensions: 4717
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 42
length of query: 1033
length of database: 48,235
effective HSP length: 72
effective length of query: 961
effective length of database: 42,619
effective search space: 40956859
effective search space used: 40956859
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000190 ORFP:YBL051C  YBL051C, Chr II from
122715-124721, reverse complement
         (668 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000190 ORFP:YBL051C  YBL051C, Chr II from 122715-124...   904   0.0  

>SCER-S28-01-000190 ORFP:YBL051C  YBL051C, Chr II from
           122715-124721, reverse complement
          Length = 668

 Score =  904 bits (2335), Expect = 0.0
 Identities = 481/668 (72%), Positives = 481/668 (72%)

Query: 1   METSSFEXXXXXXXXXXXXXXXXTETNDQETNQQSIETRDAIDKENGVQTETGENSAKNA 60
           METSSFE                TETNDQETNQQSIETRDAIDKENGVQTETGENSAKNA
Sbjct: 1   METSSFENAPPAAINDAQDNNINTETNDQETNQQSIETRDAIDKENGVQTETGENSAKNA 60

Query: 61  EQNVSSTNLNNAPTNGALDDDVIPNAIVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHF 120
           EQNVSSTNLNNAPTNGALDDDVIPNAIVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHF
Sbjct: 61  EQNVSSTNLNNAPTNGALDDDVIPNAIVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHF 120

Query: 121 DNGIFRGLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQAXXXXXXXXXXXXX 180
           DNGIFRGLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQA             
Sbjct: 121 DNGIFRGLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQAERERIEREKREKR 180

Query: 181 GQLEEQHRXXXXXXXXXXXXXXXXXXXXXXXXQLFSTLMNGXXXXXXXXXXXXXXXXXXX 240
           GQLEEQHR                        QLFSTLMNG                   
Sbjct: 181 GQLEEQHRSSSNLSLDSLSKMSGSGNNNTSNNQLFSTLMNGINANSMMNSPMNNTINNNS 240

Query: 241 XXXXXXXXXXXXQPSLSAQHTSSSLYQTNVNNQAQMSTERFYAXXXXXXXXXXXXXXXDF 300
                       QPSLSAQHTSSSLYQTNVNNQAQMSTERFYA               DF
Sbjct: 241 SNNNNSGNIILNQPSLSAQHTSSSLYQTNVNNQAQMSTERFYAPLPSTSTLPLPPQQLDF 300

Query: 301 NDPDTLEIYSQLLLFKDREKYYYELAYPMGISASHKRIINVLCSYLGLVEVYDPRFIIIR 360
           NDPDTLEIYSQLLLFKDREKYYYELAYPMGISASHKRIINVLCSYLGLVEVYDPRFIIIR
Sbjct: 301 NDPDTLEIYSQLLLFKDREKYYYELAYPMGISASHKRIINVLCSYLGLVEVYDPRFIIIR 360

Query: 361 RKILDHANLQSHLQQQGQMTSAHPLQPNSTGGSMNRSQSYTSLLQAHXXXXXXXXXXXXX 420
           RKILDHANLQSHLQQQGQMTSAHPLQPNSTGGSMNRSQSYTSLLQAH             
Sbjct: 361 RKILDHANLQSHLQQQGQMTSAHPLQPNSTGGSMNRSQSYTSLLQAHAAAAANSISNQAV 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKISSQGQFSMQPTLTSPKMNIHHSSQYNXX 480
                                        PKISSQGQFSMQPTLTSPKMNIHHSSQYN  
Sbjct: 421 NNSSNSNTINSNNGNGNNVIINNNSASSTPKISSQGQFSMQPTLTSPKMNIHHSSQYNSA 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXATLTPSSRIPSGYSANHYQINSVNPLLRNSQI 540
                                       ATLTPSSRIPSGYSANHYQINSVNPLLRNSQI
Sbjct: 481 DQPQQPQPQTQQNVQSAAQQQQSFLRQQATLTPSSRIPSGYSANHYQINSVNPLLRNSQI 540

Query: 541 SPPNSQIPINSXXXXXXXXXXXXXXXXRVPVAYQNASLSSQQLYNLNGPSSANSQSQLLP 600
           SPPNSQIPINS                RVPVAYQNASLSSQQLYNLNGPSSANSQSQLLP
Sbjct: 541 SPPNSQIPINSQTLSQAQPPAQSQTQQRVPVAYQNASLSSQQLYNLNGPSSANSQSQLLP 600

Query: 601 QHTNGSVHSNFSYQSYHDESMLSAHNLNSADLIYKSLSHSGLDDGLEQGLNRSLSGLDLQ 660
           QHTNGSVHSNFSYQSYHDESMLSAHNLNSADLIYKSLSHSGLDDGLEQGLNRSLSGLDLQ
Sbjct: 601 QHTNGSVHSNFSYQSYHDESMLSAHNLNSADLIYKSLSHSGLDDGLEQGLNRSLSGLDLQ 660

Query: 661 NQNKKNLW 668
           NQNKKNLW
Sbjct: 661 NQNKKNLW 668


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.311    0.127    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,221
Number of Sequences: 78
Number of extensions: 1844
Number of successful extensions: 21
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 1
length of query: 668
length of database: 48,235
effective HSP length: 69
effective length of query: 599
effective length of database: 42,853
effective search space: 25668947
effective search space used: 25668947
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000222 ORFP:YBL081W  YBL081W, Chr II from
71860-72966
         (368 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000222 ORFP:YBL081W  YBL081W, Chr II from 71860-72966     464   e-133

>SCER-S28-01-000222 ORFP:YBL081W  YBL081W, Chr II from 71860-72966
          Length = 368

 Score =  464 bits (1193), Expect = e-133
 Identities = 235/368 (63%), Positives = 235/368 (63%)

Query: 1   MPGQIISIPFLSQNEDMDKYLLEYRSLKLLHQSSNSFQSHNAPSHQSNYHPHYNHMKXXX 60
           MPGQIISIPFLSQNEDMDKYLLEYRSLKLLHQSSNSFQSHNAPSHQSNYHPHYNHMK   
Sbjct: 1   MPGQIISIPFLSQNEDMDKYLLEYRSLKLLHQSSNSFQSHNAPSHQSNYHPHYNHMKYNN 60

Query: 61  XXXXXXXXXXXXXXXXPHNQAGLQSINRSIPSAPYGAYNQNRANDVPYMNTQKKHHRFSA 120
                           PHNQAGLQSINRSIPSAPYGAYNQNRANDVPYMNTQKKHHRFSA
Sbjct: 61  TGSYYYYNNNNNSSVNPHNQAGLQSINRSIPSAPYGAYNQNRANDVPYMNTQKKHHRFSA 120

Query: 121 XXXXXXXXXXXXXXXTSNPMVTAHLKQTYPQLYYXXXXXXXXXXXXXXXXXXXXXXXXXX 180
                          TSNPMVTAHLKQTYPQLYY                          
Sbjct: 121 NNNLNQQKYKQYPQYTSNPMVTAHLKQTYPQLYYNSNVNAHNNNNNSNNNNNNNNNSNNN 180

Query: 181 XXLYNQTQFSTRYFXXXXXXXXXXXXXXXXXXXXXXXFEYILPXXXXXXXXXXXXXXXXX 240
             LYNQTQFSTRYF                       FEYILP                 
Sbjct: 181 NNLYNQTQFSTRYFNSNSSPSLTSSTSNSSSPYNQSTFEYILPSTSAASTNLSSSSSNNS 240

Query: 241 MHTNPTTATSTSADLINDLPVGPTSSSLISDLHSPPTVSFLPASQTLLMXXXXXXXIGTN 300
           MHTNPTTATSTSADLINDLPVGPTSSSLISDLHSPPTVSFLPASQTLLM       IGTN
Sbjct: 241 MHTNPTTATSTSADLINDLPVGPTSSSLISDLHSPPTVSFLPASQTLLMSSTTSSSIGTN 300

Query: 301 INPPQHSPSPSQREDFSTAPVXXXXXXXXXXXXXXXGWGSNHMNVXXXXXXXXXRPFGIW 360
           INPPQHSPSPSQREDFSTAPV               GWGSNHMNV         RPFGIW
Sbjct: 301 INPPQHSPSPSQREDFSTAPVNMSSSASLLMNDSSLGWGSNHMNVSSSSQPASSRPFGIW 360

Query: 361 NTDMSVWS 368
           NTDMSVWS
Sbjct: 361 NTDMSVWS 368


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.315    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,445
Number of Sequences: 78
Number of extensions: 722
Number of successful extensions: 5
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 368
length of database: 48,235
effective HSP length: 64
effective length of query: 304
effective length of database: 43,243
effective search space: 13145872
effective search space used: 13145872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 93 (40.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000320 ORFP:YBR059C  AKL1, Chr II from
356820-360146, reverse complement
         (1108 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000320 ORFP:YBR059C  AKL1, Chr II from 356820-360146...  1778   0.0  
SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847...    52   1e-08

>SCER-S28-01-000320 ORFP:YBR059C  AKL1, Chr II from 356820-360146,
            reverse complement
          Length = 1108

 Score = 1778 bits (4605), Expect = 0.0
 Identities = 917/1108 (82%), Positives = 917/1108 (82%)

Query: 1    MSITNGTSRSVSAMGHPAVERYTPGHIVCVGTHKVEVVNYLAEGGFAQIYVVKFLEYLNE 60
            MSITNGTSRSVSAMGHPAVERYTPGHIVCVGTHKVEVVNYLAEGGFAQIYVVKFLEYLNE
Sbjct: 1    MSITNGTSRSVSAMGHPAVERYTPGHIVCVGTHKVEVVNYLAEGGFAQIYVVKFLEYLNE 60

Query: 61   FDNTASVPLKIGDVACLKRVLVQDENGLNEMRNEVEVMKKLKGAPNIVQYFDSNASRRRD 120
            FDNTASVPLKIGDVACLKRVLVQDENGLNEMRNEVEVMKKLKGAPNIVQYFDSNASRRRD
Sbjct: 61   FDNTASVPLKIGDVACLKRVLVQDENGLNEMRNEVEVMKKLKGAPNIVQYFDSNASRRRD 120

Query: 121  GVQGFEVLLLMELCPNKSLLDYMNQRLSTKLTEAEIVKIMYDVALSISQMHYLPVSLIHR 180
            GVQGFEVLLLMELCPNKSLLDYMNQRLSTKLTEAEIVKIMYDVALSISQMHYLPVSLIHR
Sbjct: 121  GVQGFEVLLLMELCPNKSLLDYMNQRLSTKLTEAEIVKIMYDVALSISQMHYLPVSLIHR 180

Query: 181  DIKIENVLVDAKNNFKLADFGSTSTCFPIVTTHQDIALLTQNIYVHTTPQYRSPEMIDLY 240
            DIKIENVLVDAKNNFKLADFGSTSTCFPIVTTHQDIALLTQNIYVHTTPQYRSPEMIDLY
Sbjct: 181  DIKIENVLVDAKNNFKLADFGSTSTCFPIVTTHQDIALLTQNIYVHTTPQYRSPEMIDLY 240

Query: 241  RCLPINEKSDIWALGVFLYKLLFFTTPFEMTGQFAILHSKYEFPVNKYSSKLINLIIIML 300
            RCLPINEKSDIWALGVFLYKLLFFTTPFEMTGQFAILHSKYEFPVNKYSSKLINLIIIML
Sbjct: 241  RCLPINEKSDIWALGVFLYKLLFFTTPFEMTGQFAILHSKYEFPVNKYSSKLINLIIIML 300

Query: 301  AENPNLRPNIYQVLYHLCEILNVEVPIEDKYAEGAYNFSKYTQFQNKXXXXXXXXXXXXX 360
            AENPNLRPNIYQVLYHLCEILNVEVPIEDKYAEGAYNFSKYTQFQNK             
Sbjct: 301  AENPNLRPNIYQVLYHLCEILNVEVPIEDKYAEGAYNFSKYTQFQNKLQNVQLQMYQLQQ 360

Query: 361  KKIMQNNKLSDSEENLLNDMFLSSFEISSKLPMNASDGHAAVSRIPSQNVGQELEEEKES 420
            KKIMQNNKLSDSEENLLNDMFLSSFEISSKLPMNASDGHAAVSRIPSQNVGQELEEEKES
Sbjct: 361  KKIMQNNKLSDSEENLLNDMFLSSFEISSKLPMNASDGHAAVSRIPSQNVGQELEEEKES 420

Query: 421  QSDQRKSTLSEDKXXXXXXXXXXXXXXXXPQEINTIQSPGIEDKSIFENKTPGELYYPSV 480
            QSDQRKSTLSEDK                PQEINTIQSPGIEDKSIFENKTPGELYYPSV
Sbjct: 421  QSDQRKSTLSEDKSSRTTSNANSSGTANNPQEINTIQSPGIEDKSIFENKTPGELYYPSV 480

Query: 481  SELDTYLDKELVKQSSDPTISEQSPRLNTQSLPXXXXXXXXXXXXXXXXXXXXXGAATIG 540
            SELDTYLDKELVKQSSDPTISEQSPRLNTQSLP                     GAATIG
Sbjct: 481  SELDTYLDKELVKQSSDPTISEQSPRLNTQSLPQRQKSTSSYSSGGRSMKSTSYGAATIG 540

Query: 541  SDEALANEKTAGINKMKQHKSNNPFPKMNVAYHSTNELSNDASNFFLEEXXXXXXXXXXX 600
            SDEALANEKTAGINKMKQHKSNNPFPKMNVAYHSTNELSNDASNFFLEE           
Sbjct: 541  SDEALANEKTAGINKMKQHKSNNPFPKMNVAYHSTNELSNDASNFFLEEQQQGQRYQQAQ 600

Query: 601  XXXXXXXXXFPDESXXXXXXXXXXXXXXXPKGPANYSQRNFYTGRDRSNKPMQLGGTIAG 660
                     FPDES               PKGPANYSQRNFYTGRDRSNKPMQLGGTIAG
Sbjct: 601  NQTGTQGNTFPDESQYQSRVEQQQQQQDQPKGPANYSQRNFYTGRDRSNKPMQLGGTIAG 660

Query: 661  DSGNRRVNFQNISQNYATNSQSGYLPSQNSPAIPMVRPVISXXXXXXXXXXXXXXXXXXX 720
            DSGNRRVNFQNISQNYATNSQSGYLPSQNSPAIPMVRPVIS                   
Sbjct: 661  DSGNRRVNFQNISQNYATNSQSGYLPSQNSPAIPMVRPVISMNQQQAQQIQAQQLQAQQM 720

Query: 721  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTYVSDRTNHTTEDMRNAQGGEPPILAG 780
                                            GTYVSDRTNHTTEDMRNAQGGEPPILAG
Sbjct: 721  QAKQQMQAKQQMQVQQQLQVQQQMQIQNANNNGTYVSDRTNHTTEDMRNAQGGEPPILAG 780

Query: 781  NSANEPMHSSSKNEALLIELSPLKEDAGKQSFQDTNEPQTGGIEDAGGSGTIKGSNNNRN 840
            NSANEPMHSSSKNEALLIELSPLKEDAGKQSFQDTNEPQTGGIEDAGGSGTIKGSNNNRN
Sbjct: 781  NSANEPMHSSSKNEALLIELSPLKEDAGKQSFQDTNEPQTGGIEDAGGSGTIKGSNNNRN 840

Query: 841  GVLNLSLNEMDLSRDDTGXXXXXXXXXXXXXXIQQAKLSGRKGSSKRNNYSTDELGDSMV 900
            GVLNLSLNEMDLSRDDTG              IQQAKLSGRKGSSKRNNYSTDELGDSMV
Sbjct: 841  GVLNLSLNEMDLSRDDTGAAVSSFSSSSSSASIQQAKLSGRKGSSKRNNYSTDELGDSMV 900

Query: 901  SSESIDIDLDDARRGKTAERRPLHNERGHKDQARSSDASKSNQFKSKDFSSVSTRQPRQS 960
            SSESIDIDLDDARRGKTAERRPLHNERGHKDQARSSDASKSNQFKSKDFSSVSTRQPRQS
Sbjct: 901  SSESIDIDLDDARRGKTAERRPLHNERGHKDQARSSDASKSNQFKSKDFSSVSTRQPRQS 960

Query: 961  LDLNFQEVNLSSPTLTQEHRNKNDSPAPNSHHSYRVSPHASTAITENKRHSTGHELSTRS 1020
            LDLNFQEVNLSSPTLTQEHRNKNDSPAPNSHHSYRVSPHASTAITENKRHSTGHELSTRS
Sbjct: 961  LDLNFQEVNLSSPTLTQEHRNKNDSPAPNSHHSYRVSPHASTAITENKRHSTGHELSTRS 1020

Query: 1021 NGKHETHRTGSKQRHDLERYRHXXXXXXXXXXXXXXXXXXEMRKSFARARQSLDLEXXXX 1080
            NGKHETHRTGSKQRHDLERYRH                  EMRKSFARARQSLDLE    
Sbjct: 1021 NGKHETHRTGSKQRHDLERYRHSKDKDSNSSITISTSTPSEMRKSFARARQSLDLERVRR 1080

Query: 1081 XXXXXXXXXXXXXXXXXXXFFSVFRSEK 1108
                               FFSVFRSEK
Sbjct: 1081 EAMASSASSSGGSNGKRRSFFSVFRSEK 1108


>SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847,
           reverse complement
          Length = 513

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 29/251 (11%)

Query: 84  DENGLNEMRNEVEVMKKLKGAPNIVQYFDSNASR-RRDGVQGFEVLLLMELCPNKSLLDY 142
           D+    + R E  ++ +++  PNIV   DS      +  +Q +   L++E   +  L + 
Sbjct: 238 DQKKNKQFREETNILMRVQH-PNIVNLLDSFVEPISKSQIQKY---LVLEKIDDGELFER 293

Query: 143 MNQRLSTKLTEAEIVKIMYDVALSISQMHYLPVSLIHRDIKIENVLV-----DAKNNFKL 197
           + ++  T L + E   +   +   +  +H    ++IHRDIK EN+L+     +  +  +L
Sbjct: 294 IVRK--TCLRQDESKALFKQLLTGLKYLH--EQNIIHRDIKPENILLNITRRENPSQVQL 349

Query: 198 ADFGSTSTCFPIVTTHQDIALLTQNI-YVHT---TPQYRSPEMIDLYRCLPINEKSDIWA 253
             +        +      +A  T  + + +T   TP Y +PE++          K D+W+
Sbjct: 350 GPWDEDEIDIQVKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTK---KGYTSKVDLWS 406

Query: 254 LGVFLYKLLFFTTPF-EMTG----QFAILHSKYEFPV---NKYSSKLINLIIIMLAENPN 305
            GV LY  L    PF +  G    +  IL +KY F     +K    +++LI  +L  NP+
Sbjct: 407 AGVILYVCLCGFPPFSDQLGPPSLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPD 466

Query: 306 LRPNIYQVLYH 316
            R NI + L H
Sbjct: 467 ERYNIDEALNH 477


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,865
Number of Sequences: 78
Number of extensions: 3781
Number of successful extensions: 23
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 1108
length of database: 48,235
effective HSP length: 73
effective length of query: 1035
effective length of database: 42,541
effective search space: 44029935
effective search space used: 44029935
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000752 ORFP:YDL005C  MED2, Chr IV from
441010-442305, reverse complement
         (431 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000752 ORFP:YDL005C  MED2, Chr IV from 441010-442305...   356   e-101

>SCER-S28-01-000752 ORFP:YDL005C  MED2, Chr IV from 441010-442305,
           reverse complement
          Length = 431

 Score =  356 bits (913), Expect = e-101
 Identities = 192/261 (73%), Positives = 192/261 (73%)

Query: 1   MVVQNSPVSSVHTANFSERGSNTRTMTYKNKLTVCFDDILKVGAEMMMQQQLKNVQLDSY 60
           MVVQNSPVSSVHTANFSERGSNTRTMTYKNKLTVCFDDILKVGAEMMMQQQLKNVQLDSY
Sbjct: 1   MVVQNSPVSSVHTANFSERGSNTRTMTYKNKLTVCFDDILKVGAEMMMQQQLKNVQLDSY 60

Query: 61  LVNGFSQSQQKLLKEKVKLFHGILDDLETSLSQSSSYLETLTALGXXXXXXXXXXXXXXX 120
           LVNGFSQSQQKLLKEKVKLFHGILDDLETSLSQSSSYLETLTALG               
Sbjct: 61  LVNGFSQSQQKLLKEKVKLFHGILDDLETSLSQSSSYLETLTALGKEKEKEREEAEKKRA 120

Query: 121 XQENMRKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGLNFSTTAPANTTDANGSKEN 180
            QENMRKV                             GLGLNFSTTAPANTTDANGSKEN
Sbjct: 121 EQENMRKVREQEELKKRQELEEASQQQQLQQNSKEKNGLGLNFSTTAPANTTDANGSKEN 180

Query: 181 YXXXXXXXXXXXXXXEXXXXXXXXXXFSPLTTTRIQSQQAQPSDVMFNDLNSMDISMFSG 240
           Y              E          FSPLTTTRIQSQQAQPSDVMFNDLNSMDISMFSG
Sbjct: 181 YQELGSLQSSSQTQLENANAANNGAAFSPLTTTRIQSQQAQPSDVMFNDLNSMDISMFSG 240

Query: 241 LDSTGFDSTAFNATVDETKGF 261
           LDSTGFDSTAFNATVDETKGF
Sbjct: 241 LDSTGFDSTAFNATVDETKGF 261



 Score =  108 bits (271), Expect = 2e-26
 Identities = 54/66 (81%), Positives = 54/66 (81%)

Query: 366 SITTGNDNENIVNNDLPTTVVSXXXXXXXXXXXXEEYLTLNDFNDLNIDWSTTGDNGELD 425
           SITTGNDNENIVNNDLPTTVVS            EEYLTLNDFNDLNIDWSTTGDNGELD
Sbjct: 366 SITTGNDNENIVNNDLPTTVVSNPGDNPPPADNGEEYLTLNDFNDLNIDWSTTGDNGELD 425

Query: 426 LSGFNI 431
           LSGFNI
Sbjct: 426 LSGFNI 431


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.310    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,354
Number of Sequences: 78
Number of extensions: 913
Number of successful extensions: 6
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 431
length of database: 48,235
effective HSP length: 65
effective length of query: 366
effective length of database: 43,165
effective search space: 15798390
effective search space used: 15798390
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000782 ORFP:YDL035C  GPR1, Chr IV from
389168-392053, reverse complement
         (961 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000782 ORFP:YDL035C  GPR1, Chr IV from 389168-392053...  1689   0.0  

>SCER-S28-01-000782 ORFP:YDL035C  GPR1, Chr IV from 389168-392053,
           reverse complement
          Length = 961

 Score = 1689 bits (4373), Expect = 0.0
 Identities = 840/961 (87%), Positives = 840/961 (87%)

Query: 1   MITEGFPPNLNALKGSSLLEKRVDSLRQLNTTTVNQLLGLPGMTSTFTAPQLLQLRIIAI 60
           MITEGFPPNLNALKGSSLLEKRVDSLRQLNTTTVNQLLGLPGMTSTFTAPQLLQLRIIAI
Sbjct: 1   MITEGFPPNLNALKGSSLLEKRVDSLRQLNTTTVNQLLGLPGMTSTFTAPQLLQLRIIAI 60

Query: 61  TASAVSLIAGCLGMFFLSKMDKRRKVFRHDLIAFLIICDFLKAFILMIYPMIILINNSVY 120
           TASAVSLIAGCLGMFFLSKMDKRRKVFRHDLIAFLIICDFLKAFILMIYPMIILINNSVY
Sbjct: 61  TASAVSLIAGCLGMFFLSKMDKRRKVFRHDLIAFLIICDFLKAFILMIYPMIILINNSVY 120

Query: 121 ATPAFFNTLGWFTAFAIEGADMXXXXXXXXXXXXXXKPNWKWRNKRSGNMEGGLYKKRSY 180
           ATPAFFNTLGWFTAFAIEGADM              KPNWKWRNKRSGNMEGGLYKKRSY
Sbjct: 121 ATPAFFNTLGWFTAFAIEGADMAIMIFAIHFAILIFKPNWKWRNKRSGNMEGGLYKKRSY 180

Query: 181 IWPITALVPAILASLAFINYNKLNDDSDTTIILDNNNYNFPDSPRQGGYKPWSAWCYLPP 240
           IWPITALVPAILASLAFINYNKLNDDSDTTIILDNNNYNFPDSPRQGGYKPWSAWCYLPP
Sbjct: 181 IWPITALVPAILASLAFINYNKLNDDSDTTIILDNNNYNFPDSPRQGGYKPWSAWCYLPP 240

Query: 241 KPYWYKIVLSWGPRYFIIIFIFAVYLSIYIFITSESKRIKAQIGDFNHNVLXXXXXXXXL 300
           KPYWYKIVLSWGPRYFIIIFIFAVYLSIYIFITSESKRIKAQIGDFNHNVL        L
Sbjct: 241 KPYWYKIVLSWGPRYFIIIFIFAVYLSIYIFITSESKRIKAQIGDFNHNVLEEEKEKKKL 300

Query: 301 FGLGHWGKAKWYFRSYFKXXXXXXXXXXKNFFTISFIDPNEETDDSGSSNGTFNFGESSN 360
           FGLGHWGKAKWYFRSYFK          KNFFTISFIDPNEETDDSGSSNGTFNFGESSN
Sbjct: 301 FGLGHWGKAKWYFRSYFKLPLLHLLRNLKNFFTISFIDPNEETDDSGSSNGTFNFGESSN 360

Query: 361 EIPTLFRKTNTGSDENVSASGGVRLLDYNSAKPLDMSKYAMSEQPDLERNNPFDCENDIT 420
           EIPTLFRKTNTGSDENVSASGGVRLLDYNSAKPLDMSKYAMSEQPDLERNNPFDCENDIT
Sbjct: 361 EIPTLFRKTNTGSDENVSASGGVRLLDYNSAKPLDMSKYAMSEQPDLERNNPFDCENDIT 420

Query: 421 LNPSELVSKQKEHKVTFSVENEGLDTRKSSMLGHQTFSCQNSLESPLAMYDNKNDNSDIT 480
           LNPSELVSKQKEHKVTFSVENEGLDTRKSSMLGHQTFSCQNSLESPLAMYDNKNDNSDIT
Sbjct: 421 LNPSELVSKQKEHKVTFSVENEGLDTRKSSMLGHQTFSCQNSLESPLAMYDNKNDNSDIT 480

Query: 481 SNIKEKGGIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           SNIKEKGGII                                                  
Sbjct: 481 SNIKEKGGIINNNSNNDDDDNNNNNDNDNDNNNSNNNNNNNNNNNNNNNNNNNNNNNNNN 540

Query: 541 XXXXXXXXXXXXXXXXXXPADNIPTLSNEAFTPSQQFSQERVNNNADRCENSSFTNVQQH 600
                             PADNIPTLSNEAFTPSQQFSQERVNNNADRCENSSFTNVQQH
Sbjct: 541 NNNNSNNIKNNVDNNNTNPADNIPTLSNEAFTPSQQFSQERVNNNADRCENSSFTNVQQH 600

Query: 601 FQAQTYKQMKKRRAQIQKNLRAIFIYPLSYIGIWLFPIIADALQYNHEIKHGPTMWVTYI 660
           FQAQTYKQMKKRRAQIQKNLRAIFIYPLSYIGIWLFPIIADALQYNHEIKHGPTMWVTYI
Sbjct: 601 FQAQTYKQMKKRRAQIQKNLRAIFIYPLSYIGIWLFPIIADALQYNHEIKHGPTMWVTYI 660

Query: 661 DTCVRPLSCLVDVIVYLFKEKPWNYSWAKTESKYLIEKYILKGELGEKEILKFCHSNWGK 720
           DTCVRPLSCLVDVIVYLFKEKPWNYSWAKTESKYLIEKYILKGELGEKEILKFCHSNWGK
Sbjct: 661 DTCVRPLSCLVDVIVYLFKEKPWNYSWAKTESKYLIEKYILKGELGEKEILKFCHSNWGK 720

Query: 721 RGWYYRGKWKKRKCWKYSTNPLKRILWFVERFFKQLFELKLHFSFYDNCDDFEYWENYYS 780
           RGWYYRGKWKKRKCWKYSTNPLKRILWFVERFFKQLFELKLHFSFYDNCDDFEYWENYYS
Sbjct: 721 RGWYYRGKWKKRKCWKYSTNPLKRILWFVERFFKQLFELKLHFSFYDNCDDFEYWENYYS 780

Query: 781 AKDSNDNKRTESDETKTNSSDRSLPSNSLELQAMLNNITAEEVEVPLFWRIIHHIPMLGG 840
           AKDSNDNKRTESDETKTNSSDRSLPSNSLELQAMLNNITAEEVEVPLFWRIIHHIPMLGG
Sbjct: 781 AKDSNDNKRTESDETKTNSSDRSLPSNSLELQAMLNNITAEEVEVPLFWRIIHHIPMLGG 840

Query: 841 IDLDELNRLLKIRYNNDHFSLPGLKFALNQNKSHDKHQDVSTNSMVKSSFFSSNIVTNDD 900
           IDLDELNRLLKIRYNNDHFSLPGLKFALNQNKSHDKHQDVSTNSMVKSSFFSSNIVTNDD
Sbjct: 841 IDLDELNRLLKIRYNNDHFSLPGLKFALNQNKSHDKHQDVSTNSMVKSSFFSSNIVTNDD 900

Query: 901 ENSIEEDKNLRYSDASASENYLVKXXXXXXXXXXXXEAQXXXXXXXXXGIDLIAFLRNGP 960
           ENSIEEDKNLRYSDASASENYLVK            EAQ         GIDLIAFLRNGP
Sbjct: 901 ENSIEEDKNLRYSDASASENYLVKPTIPGTTPDPIIEAQNDNDSSDSSGIDLIAFLRNGP 960

Query: 961 L 961
           L
Sbjct: 961 L 961


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.319    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,980
Number of Sequences: 78
Number of extensions: 3854
Number of successful extensions: 32
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 10
length of query: 961
length of database: 48,235
effective HSP length: 71
effective length of query: 890
effective length of database: 42,697
effective search space: 38000330
effective search space used: 38000330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from
345664-351036
         (1790 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036     3117   0.0  
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443    132   9e-33
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)       131   2e-32
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054    124   3e-30
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...    95   2e-21
MGEN-G37-01-000335 MG328  conserved hypothetical protein               84   3e-18
SYNE-PCC-01-000727 sll1120                                             67   4e-13
SYNE-PCC-01-000943 sll1424                                             50   5e-08
MJAN-DSM-01-001277 MJ1254  hypothetical protein                        49   2e-07
SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,...    47   4e-07
SYNE-PCC-01-001071 sll1583                                             47   7e-07
MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)        45   3e-06

>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 3117 bits (8082), Expect = 0.0
 Identities = 1651/1790 (92%), Positives = 1651/1790 (92%)

Query: 1    MDIIQGLIQQPKIQSVDETIPTLCDRVENSTLISDRRSAVLGLKAFSRQYRESVIASGLK 60
            MDIIQGLIQQPKIQSVDETIPTLCDRVENSTLISDRRSAVLGLKAFSRQYRESVIASGLK
Sbjct: 1    MDIIQGLIQQPKIQSVDETIPTLCDRVENSTLISDRRSAVLGLKAFSRQYRESVIASGLK 60

Query: 61   PLLNTLKRDYMDEDSVKAILETILILFIRGDGHDDLTRGWISQQSRLQNGKYPSPLVMKQ 120
            PLLNTLKRDYMDEDSVKAILETILILFIRGDGHDDLTRGWISQQSRLQNGKYPSPLVMKQ
Sbjct: 61   PLLNTLKRDYMDEDSVKAILETILILFIRGDGHDDLTRGWISQQSRLQNGKYPSPLVMKQ 120

Query: 121  EKEQVDQFSLWIADALTQSEDLIHLLVEFWEIDNFHIRLYTIQLLEAVMATRPLKARSAL 180
            EKEQVDQFSLWIADALTQSEDLIHLLVEFWEIDNFHIRLYTIQLLEAVMATRPLKARSAL
Sbjct: 121  EKEQVDQFSLWIADALTQSEDLIHLLVEFWEIDNFHIRLYTIQLLEAVMATRPLKARSAL 180

Query: 181  ISLPTSISTMVSLLDDMHEPIRDEAILLLMAVVNDSPHVQKLVAFENIFERLFSIIEEEG 240
            ISLPTSISTMVSLLDDMHEPIRDEAILLLMAVVNDSPHVQKLVAFENIFERLFSIIEEEG
Sbjct: 181  ISLPTSISTMVSLLDDMHEPIRDEAILLLMAVVNDSPHVQKLVAFENIFERLFSIIEEEG 240

Query: 241  GLRGSLVVNDCLSLINNILKYNTSNQTLFLETGNLPKLAHLLSEPISQDEVFFWNDQRIV 300
            GLRGSLVVNDCLSLINNILKYNTSNQTLFLETGNLPKLAHLLSEPISQDEVFFWNDQRIV
Sbjct: 241  GLRGSLVVNDCLSLINNILKYNTSNQTLFLETGNLPKLAHLLSEPISQDEVFFWNDQRIV 300

Query: 301  NINTALDIVSLTVEPGNTVTTKHQNALLDSSVLMVVLRLAFFHNIPKKVRPVALLTAANM 360
            NINTALDIVSLTVEPGNTVTTKHQNALLDSSVLMVVLRLAFFHNIPKKVRPVALLTAANM
Sbjct: 301  NINTALDIVSLTVEPGNTVTTKHQNALLDSSVLMVVLRLAFFHNIPKKVRPVALLTAANM 360

Query: 361  VRSNEHAQLEFSKIDVPYFDPSLPVNSTANGGPIKLIPVVSILINWMLYANSVHTFDTRV 420
            VRSNEHAQLEFSKIDVPYFDPSLPVNSTANGGPIKLIPVVSILINWMLYANSVHTFDTRV
Sbjct: 361  VRSNEHAQLEFSKIDVPYFDPSLPVNSTANGGPIKLIPVVSILINWMLYANSVHTFDTRV 420

Query: 421  ACSRLLKAYFMDNFDLQRDFLLKQVQLCNNSTNNVGDNAKENXXXXXXXXXXXXXXXXXX 480
            ACSRLLKAYFMDNFDLQRDFLLKQVQLCNNSTNNVGDNAKEN                  
Sbjct: 421  ACSRLLKAYFMDNFDLQRDFLLKQVQLCNNSTNNVGDNAKENGGSNKSDKESDSDKDTDG 480

Query: 481  XXXXXYEGSFKANLFEVLLNYDAELNLNPXXXXXXXXXXXXXXQQDHKYSEELREITRNV 540
                 YEGSFKANLFEVLLNYDAELNLNP              QQDHKYSEELREITRNV
Sbjct: 481  KDGTEYEGSFKANLFEVLLNYDAELNLNPFKLFFTTDIFMFFFQQDHKYSEELREITRNV 540

Query: 541  TTGNDLEDEEPLKAIQTISELLTTSLTAADIRIPISYLTFLIYWLFGDFKATNDFLSDKS 600
            TTGNDLEDEEPLKAIQTISELLTTSLTAADIRIPISYLTFLIYWLFGDFKATNDFLSDKS
Sbjct: 541  TTGNDLEDEEPLKAIQTISELLTTSLTAADIRIPISYLTFLIYWLFGDFKATNDFLSDKS 600

Query: 601  VIKSLLSFSYQIQDEDVTIKCLVTMLLGVAYEFSSKESPFPRKEYFEFITKTLGKDNYAS 660
            VIKSLLSFSYQIQDEDVTIKCLVTMLLGVAYEFSSKESPFPRKEYFEFITKTLGKDNYAS
Sbjct: 601  VIKSLLSFSYQIQDEDVTIKCLVTMLLGVAYEFSSKESPFPRKEYFEFITKTLGKDNYAS 660

Query: 661  RIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDPD 720
            RIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDPD
Sbjct: 661  RIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDPD 720

Query: 721  EEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQI 780
            EEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQI
Sbjct: 721  EEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQI 780

Query: 781  LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDS 840
            LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDS
Sbjct: 781  LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDS 840

Query: 841  IKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKE 900
            IKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKE
Sbjct: 841  IKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKE 900

Query: 901  TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKL 960
            TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKL
Sbjct: 901  TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKL 960

Query: 961  TEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSI 1020
            TEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSI
Sbjct: 961  TEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSI 1020

Query: 1021 EKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISEL 1080
            EKNIEQLKKTISDLEQT                 QISLLKEKLETATTANDENVNKISEL
Sbjct: 1021 EKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISEL 1080

Query: 1081 TKTREELEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQL 1140
            TKTREELEAELAAYKNLKNELETKLETSEKAL              IQLEKEATETKQQL
Sbjct: 1081 TKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQL 1140

Query: 1141 NSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKN 1200
            NSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKN
Sbjct: 1141 NSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKN 1200

Query: 1201 DELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI 1260
            DELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI
Sbjct: 1201 DELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI 1260

Query: 1261 KELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKIT 1320
            KELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKIT
Sbjct: 1261 KELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKIT 1320

Query: 1321 NXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTIT 1380
            N                      RKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTIT
Sbjct: 1321 NLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTIT 1380

Query: 1381 QEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEI 1440
            QEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEI
Sbjct: 1381 QEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEI 1440

Query: 1441 LSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXX 1500
            LSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQES                      
Sbjct: 1441 LSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAEL 1500

Query: 1501 XXXXXXXXXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRI 1560
                        TIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRI
Sbjct: 1501 EKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRI 1560

Query: 1561 NESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELK 1620
            NESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELK
Sbjct: 1561 NESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELK 1620

Query: 1621 DKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAM 1680
            DKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAM
Sbjct: 1621 DKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAM 1680

Query: 1681 LLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSE 1740
            LLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSE
Sbjct: 1681 LLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSE 1740

Query: 1741 IDDLMLLVTDLDEKNAKYRSKLKDLGVEISSXXXXXXXXXXXXXXXGQVA 1790
            IDDLMLLVTDLDEKNAKYRSKLKDLGVEISS               GQVA
Sbjct: 1741 IDDLMLLVTDLDEKNAKYRSKLKDLGVEISSDEEDDEEDDEEDEEEGQVA 1790


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score =  132 bits (332), Expect = 9e-33
 Identities = 217/1100 (19%), Positives = 421/1100 (38%), Gaps = 156/1100 (14%)

Query: 636  KESPFPRKEYFEFITKTLGKDNYASRIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVY 695
            KE P+     F  I   L   N  +R K+F +     K D+ E       L+E     V 
Sbjct: 839  KEDPW--FNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVN 896

Query: 696  FSTYFIQLFNENIYRIRTALSHDPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETES 755
                   L N+    +R       +E  +N++     E LQ+Q   L  E   +  E   
Sbjct: 897  ELENTQDLLNQEKENLRK------NESLLNRVKTSS-ETLQKQFDDLVSEKDEISREKLE 949

Query: 756  THENLTE---KLIALTNEHKELDEKYQILNSSHSSLKENFSILETELKNVRDSL------ 806
              +NL E   K+  L    +E +   + L+S ++ L +  S L  ++   + S       
Sbjct: 950  VAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKES 1009

Query: 807  -----DEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKKKAEDG 861
                 +E+ +L+DV+ +K++E ++   +  S+    +  + TLEK     +S+ +     
Sbjct: 1010 KLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTE 1069

Query: 862  INKMGKDLFALSREMQAVEENCKNLQKE--KDKSNV-NHQKETKSLKEDIAAKITEIKAI 918
             + +        +E  A+    KN + E  K K  + NH+KE  +  +     ++E   I
Sbjct: 1070 NSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKI 1129

Query: 919  NENLEEMKIQC----NNLSKEKEHISKELVEYKSRFQSHDN-------------LVAKLT 961
               L+E +IQ     +N  K KE  S    E K + Q   N             L A+L+
Sbjct: 1130 TAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLS 1189

Query: 962  EKL-------KSLANN--------------YKDMQAENESLIKAVEESKNESSIQLSNLQ 1000
            +++       K ++ N              Y D   + E +IK   + +   +    NL+
Sbjct: 1190 QEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLE 1249

Query: 1001 NKIDSMSQEKENF--------------QIERGSIEKNIEQLKKTISDLEQTXXXXXXXXX 1046
            N+I+    EK+N                 E   I+  +++LKK I D++ +         
Sbjct: 1250 NEIE----EKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNE 1305

Query: 1047 ---------XXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELA----- 1092
                             ++  LK +L+  T A+ +  N IS L     +++ E +     
Sbjct: 1306 PLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSD 1365

Query: 1093 -------AYKNLKNELETKLET----------------SEKALXXXXXXXXXXXXXXIQL 1129
                   A +     LE KL+T                +  ++               +L
Sbjct: 1366 IYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKL 1425

Query: 1130 EKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITST 1189
            ++   E+  +L+ L  +L   + +   L+ QL + ++ + + ERQ     S +  +    
Sbjct: 1426 QEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQF 1485

Query: 1190 QQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLES 1249
            +   + ++     L   + A+K   E+  N+  S I+ L  Q K+ +K     E    +S
Sbjct: 1486 ENCMDDLQGNELRLREHIHALKQAEEDVKNMA-SIIEKLKTQNKQKEKLIWEREMERNDS 1544

Query: 1250 IKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKT 1309
               ++   +++K +QD       +++ L+++L A ED++    E+ +  E++   L A+T
Sbjct: 1545 DMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAET 1604

Query: 1310 ------TELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQ 1363
                    LK +LE  TN                        N ++ +   + E+  K +
Sbjct: 1605 NLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYE 1664

Query: 1364 AFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSND 1423
            A   E + L     ++T+   E  + L  +   LQ  N   +      +   EK+    +
Sbjct: 1665 ALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEE 1724

Query: 1424 EL-LEEKQNT-----IKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQE 1477
             L L+ +QN+     +K+LQ     YKDK     +K + +  +N + L+ L   L+   +
Sbjct: 1725 TLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEEN-QTLQKLNTDLQLQLK 1783

Query: 1478 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSDE-KLE 1536
            +                                    + +E E   S+ET  K +E K  
Sbjct: 1784 NLHERLSDTTEKNAWLS--------------------KIHELENMVSLETDLKYEEMKKN 1823

Query: 1537 QSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQE 1596
            +S + A E+++    +++D+I   N++  + EE  + L+ EA+     + + Q+    ++
Sbjct: 1824 KSLERAVEELQTKNSQQTDVIELANKNRSEFEE--ATLKYEAQISDLEKYISQQELEMKK 1881

Query: 1597 KIRINAEENTVLKSKLEDIE 1616
             IR N+     ++   ++IE
Sbjct: 1882 SIRDNSSYRDKVQEMAQEIE 1901



 Score =  129 bits (323), Expect = 1e-31
 Identities = 187/984 (19%), Positives = 409/984 (41%), Gaps = 123/984 (12%)

Query: 852  LSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSL----KED 907
            +++ KK  + INK+  DL    +EM    E+ K   +EK++  VN  + T+ L    KE+
Sbjct: 860  MTRTKKFNEQINKLKNDL----QEM----ESKKKFLEEKNQKTVNELENTQDLLNQEKEN 911

Query: 908  IAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSL 967
            +    + +  +  + E ++ Q ++L  EK+ IS+E +E     +     +  L E ++  
Sbjct: 912  LRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIRER 971

Query: 968  ANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQL 1027
                + + ++N  LIK           Q+S+L   I      +   +  +  +E  I++L
Sbjct: 972  EATLEKLHSKNNELIK-----------QISDLNCDISKEQSSQSLIKESKLKLENEIKRL 1020

Query: 1028 KKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREEL 1087
            K  I+  E+                  ++  L++    A +     V + S+L    E  
Sbjct: 1021 KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENF 1080

Query: 1088 EAELAAYKN-LKNE------LETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQL 1140
            + E AA  N LKN+      ++ K++  +K L               ++  E  ET+ QL
Sbjct: 1081 KKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQL 1140

Query: 1141 NSLRANLESLEKEHEDLAAQLKKYEEQIANK------ERQYNEEISQLNDEITSTQQENE 1194
               ++N + +++E+ +   + K+ E++  N       + +  E  ++L+ EI+  Q  N+
Sbjct: 1141 TEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNK 1200

Query: 1195 SIKKKNDELEGEVKAMKSTSEEQSNLKKSEID-------------ALNLQIKELKKKN-- 1239
             I   + E        +STS     L K +I                NL+ +  +KKN  
Sbjct: 1201 RISGNSVETNIS-STRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLI 1259

Query: 1240 ------ETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLE 1293
                  ET  AS     + ++++  K+K+L  + +      S L + L    DK S   +
Sbjct: 1260 SRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINK 1319

Query: 1294 LQKESEKIKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNA-EEQLE 1352
            L  E + +K +LD +T         I+                       +  A EE+++
Sbjct: 1320 LMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVK 1379

Query: 1353 KLKNEIQ---------------IKNQ----AFEKE---RKLLNEGSSTITQEYSEKINTL 1390
             L+++++               IKN+     +E+E    KL N     I  E + K++ L
Sbjct: 1380 SLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQL 1439

Query: 1391 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDEL---LEEKQNTIKSLQDEILSYKDKI 1447
              +L + +++  L ++++D  + +LE      + L   +++++   ++  D++   + ++
Sbjct: 1440 TLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRL 1499

Query: 1448 TRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1507
              +   L   E D K ++ S+ E+L+   +                              
Sbjct: 1500 REHIHALKQAEEDVK-NMASIIEKLKTQNKQKEKLIWERE-------------------- 1538

Query: 1508 XXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDI 1567
                  +E N+++++   ET+ +  ++++  KK   +D+ +L+   S +  R   ++ +I
Sbjct: 1539 ------MERNDSDMQLQ-ETLLEL-KRVQDVKKILSDDLAHLKERLSAVEDRSQYTD-EI 1589

Query: 1568 EELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIK 1627
              LK +L    K+ + L   K+E    + K+  +  ++   ++K+ D+ ++L      ++
Sbjct: 1590 NRLKEELNCSLKAETNL---KKEFATLKYKLETSTNDS---EAKISDLLKQLDHYTKVVE 1643

Query: 1628 SNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYN 1687
                EK+ ++   KEL Q+ ++   + +  + +  +  +  Q  +S L++K   L+    
Sbjct: 1644 MLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNA 1703

Query: 1688 DLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLL 1747
             L +  Q  K   + +K   ++ + ++E+ ++  + +K   +     N  + + DD    
Sbjct: 1704 ALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQA---SCNGYKDKFDDEKQK 1760

Query: 1748 VTDLDEKNAKYRSKLKDLGVEISS 1771
              DL E+N   +    DL +++ +
Sbjct: 1761 NIDLYEENQTLQKLNTDLQLQLKN 1784



 Score = 80.5 bits (197), Expect = 4e-17
 Identities = 129/599 (21%), Positives = 255/599 (42%), Gaps = 60/599 (10%)

Query: 659  ASRIKQFKKDSYFSKVDMNEDSILT-PELDETGLPKVYFSTYFIQLFNENIYRIRTALSH 717
            +S I + K ++   +V   ED + T P  D T LP              +I + R ++S 
Sbjct: 1363 SSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPV------------GDIIKNRDSISK 1410

Query: 718  DPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEK 777
              +E    K+   +++++  +      ++T    +++S    L+E+L  L  + +  + +
Sbjct: 1411 YEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQ 1470

Query: 778  YQILNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQ 837
             ++L+S+    K+ F     +L+     L E        E +D +N  +++E   T +KQ
Sbjct: 1471 KELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAE-EDVKNMASIIEKLKTQNKQ 1529

Query: 838  EDSI---KTLEKG-----LETILSQKKKAEDGINKMGKDLFALSREMQAVEENCK---NL 886
            ++ +   + +E+      L+  L + K+ +D    +  DL  L   + AVE+  +    +
Sbjct: 1530 KEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEI 1589

Query: 887  QKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEY 946
             + K++ N + + ET   KE    K     + N++  E KI  ++L K+ +H +K +VE 
Sbjct: 1590 NRLKEELNCSLKAETNLKKEFATLKYKLETSTNDS--EAKI--SDLLKQLDHYTK-VVEM 1644

Query: 947  KSRFQSHDNLVAK-LTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDS 1005
             +  +   +L  K L +K ++L    + ++ +  SL K  +E +++ + +   LQ    +
Sbjct: 1645 LNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAA 1704

Query: 1006 MSQEKENFQIERGSIEKNIEQLKKTIS-DLEQTXXXXXXXXXXXXXXXXXQISLLKEKLE 1064
            +S   +    +   I + I+ L++T+   +EQ                       K+K +
Sbjct: 1705 LSSSTQ----KNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGY-----KDKFD 1755

Query: 1065 TATTANDENVNKISELTKTREELEAELAAYKNL---------KNELETKLETSEKALXXX 1115
                 N +   +   L K   +L+ +L   KNL         KN   +K+   E  +   
Sbjct: 1756 DEKQKNIDLYEENQTLQKLNTDLQLQL---KNLHERLSDTTEKNAWLSKIHELENMVSLE 1812

Query: 1116 XXXXXXXXXXXIQLEKEATETKQQLNSLRAN-LESLEKEHEDLAAQLKKYEEQIANKERQ 1174
                         LE+ A E  Q  NS + + +E   K   +      KYE QI++ E+ 
Sbjct: 1813 TDLKYEEMKKNKSLER-AVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKY 1871

Query: 1175 YNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK 1233
                ISQ   E+  + ++N S + K  E+  E++  KS   E + +    ID+ N Q K
Sbjct: 1872 ----ISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKS-RYESTMIGSKNIDSNNAQSK 1925



 Score = 73.2 bits (178), Expect = 7e-15
 Identities = 77/375 (20%), Positives = 163/375 (43%), Gaps = 25/375 (6%)

Query: 1371 LLNEGSSTITQEYSEKINTLEDELIR-------LQNENELKAKEIDNTRSEL--EKVSL- 1420
            L +    T T++++E+IN L+++L         L+ +N+    E++NT+  L  EK +L 
Sbjct: 854  LTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLR 913

Query: 1421 SNDELLEEKQNTIKSLQ---DEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQE 1477
             N+ LL   + + ++LQ   D+++S KD+I+R   ++     +  + ++ L+E +R  + 
Sbjct: 914  KNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREA 973

Query: 1478 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELK-------SSMETIRK 1530
            +                                  +    E E+K       S  E I+ 
Sbjct: 974  TLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKS 1033

Query: 1531 SDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSK----LRIEAKSGSELET 1586
             ++KL  S++  +  +  L+   +  +SR+     +  +L+SK     + +A   ++L+ 
Sbjct: 1034 FNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKN 1093

Query: 1587 VKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQE 1646
             + EL   +EKI  + +E      + +D   E     AE+K  + +     S  +++++E
Sbjct: 1094 KESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEE 1153

Query: 1647 LDSTQQKAQKSEEERR-AEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKK 1705
              + Q++ ++ E+++R + V      K +  E  +  E   N  +NK  +    E  +  
Sbjct: 1154 YSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISS 1213

Query: 1706 TTDSQRQEIEKLAKE 1720
            T  S     + L KE
Sbjct: 1214 TRRSTSYSDDPLDKE 1228


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score =  131 bits (330), Expect = 2e-32
 Identities = 198/1149 (17%), Positives = 464/1149 (40%), Gaps = 96/1149 (8%)

Query: 660  SRIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDP 719
            + +KQ  ++  ++K +++++  L  +  +     ++     +    + +  +        
Sbjct: 446  NEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQ 505

Query: 720  DEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQ 779
            D++    + FE+  +L++     + E+ + Q E       L    I L ++ K+L+ K Q
Sbjct: 506  DQKENELLFFEK--QLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDLNTKAQ 563

Query: 780  ILNSSHSSLKENFS-------ILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKS 832
             + +  S LK + S       +L+ E +N++    ++ Q R   E         L + + 
Sbjct: 564  QIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKRE 623

Query: 833  TIHKQEDSIKTLEKGLETI-LSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQK--- 888
             + +Q++++  L K  E   L  +++ ++ +  + K    L +++Q   +   N  K   
Sbjct: 624  ELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLA 683

Query: 889  EKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKS 948
            E++ +    +KE ++ ++ +   +   + I  +L ++    N    E ++  + + ++  
Sbjct: 684  EREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADF-- 741

Query: 949  RFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQ-LSNLQNKIDSMS 1007
                H++ + KL E   SL    +++Q         +E ++ + S Q  +  + ++D ++
Sbjct: 742  ----HNDSLKKLNEYELSLQKRLQELQT--------LEANQKQHSYQNQAYFEGELDKLN 789

Query: 1008 QEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQI-------SLLK 1060
            +EK+ F   R      ++ +K+ +SD  Q                             L+
Sbjct: 790  REKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQ 849

Query: 1061 EKLETATTANDENVNKISELTKTREELEAELAAYK----NLKNELETKLETSEKALXXXX 1116
            ++L T          + S L + + E    +A +K    N  ++L+   E ++K      
Sbjct: 850  DQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQESEQT 909

Query: 1117 XXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANK----- 1171
                        L+K+    + Q +     +E+ ++E + LA +  + + ++ N+     
Sbjct: 910  QKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQ 969

Query: 1172 ---------ERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKK 1222
                     + +   E  QLN E T+  Q NES+ K+ ++L  +++A     ++++    
Sbjct: 970  NQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELKKRNQF-- 1027

Query: 1223 SEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDE-CNFKEKEVSELEDKL 1281
                 L L+ K L  K +  +       +  +    + K+ + E  +F E +  ELE+  
Sbjct: 1028 -----LALKGKRLFAKEQDQQ-------RKDQEINWRFKQFEKEYTDFDEAKKRELEELE 1075

Query: 1282 KASEDKNSKYLELQKESEKIKEE---LDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXX 1338
            K     +   +EL+++ EK+  +   L+      +I  +++ +                 
Sbjct: 1076 KIRRSLSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSN 1135

Query: 1339 XXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQ 1398
                 +    ++L    + ++++ +A   ++   ++      +E  +    LE      Q
Sbjct: 1136 EANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQ 1195

Query: 1399 NENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIE 1458
            N +  K +++   +++ EK+S    + L +K   +K+L    L+ K+K   + ++L    
Sbjct: 1196 NFDIEKQRQLVAIKTQCEKLS-DEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKY 1254

Query: 1459 R---DNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIE 1515
                D K +LE  K+QL     S                                   ++
Sbjct: 1255 TNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRI----------VD 1304

Query: 1516 SNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLR 1575
                 LK +   +     + E+ +   E+ I   + ++      I  S K++++ + +L+
Sbjct: 1305 DKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQ 1364

Query: 1576 IEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKEL 1635
               K   ELET K +LNN   K     EE    + KL ++++ L+ +        +  + 
Sbjct: 1365 ---KLLVELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQE 1421

Query: 1636 LTSRLKELEQELDSTQQKAQKSEEERRAEVRKF--QVEKSQLDEKAMLLETKYNDLVNKE 1693
            + +  K   +EL+  +++  K++       RK   ++E+ +   K +L ET+    + + 
Sbjct: 1422 IENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEA 1481

Query: 1694 QAWKRDEDTVKKTTDSQRQEIEKLAKELD-NLKAENSKLKEANEDRSEIDDLMLLVTDLD 1752
            QA K + +  K T D + +E++    ++D ++ + N + KE NE    +++  LL   L 
Sbjct: 1482 QANKLNIE--KNTIDFKEKELKAFKDKVDQDIDSTNKQRKELNE---LLNENKLLQQSLI 1536

Query: 1753 EKNAKYRSK 1761
            E+     SK
Sbjct: 1537 ERERAINSK 1545



 Score =  129 bits (324), Expect = 8e-32
 Identities = 233/1255 (18%), Positives = 499/1255 (39%), Gaps = 175/1255 (13%)

Query: 620  KCLVTMLLGVAYEFSSKESPFPRKEYFEFITKTLGKDNYASRIKQFKKDSYFSKVDMNED 679
            K L T    +A EFS  ++   +   FE + +   ++    + K F++ +YF +      
Sbjct: 556  KDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLS 615

Query: 680  SILTPELDETGLPKVYFSTYFIQLFNENIYRIRTALSHDPDEEPINKISFEE-VEKLQRQ 738
            + L  + +E    K            E + ++  +      E  IN+   +E V  +++Q
Sbjct: 616  NRLQQKREELLQQK------------ETLDQLTKSFE---QERLINQREHKELVASVEKQ 660

Query: 739  CTKLKGEITSLQTETESTHENLTEKLIALTNEHKELD-EKYQILNSSHSSLKENFSILET 797
               L  ++      + +  +NL E+ +A+  + KE++  + Q+LN  +     N  +++ 
Sbjct: 661  KEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVN-----NAEVIQA 715

Query: 798  ELKNVRDSLD----EMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILS 853
            +L  +  SL+    E+   +  +     ++   L EY+ ++ K+   ++TLE   +    
Sbjct: 716  DLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSY 775

Query: 854  QKKKAEDG-INKMG--KDLFALSREMQAVE-----------ENCKNLQK--------EKD 891
            Q +   +G ++K+   K  F   R+ Q +E               N+Q+        E +
Sbjct: 776  QNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELN 835

Query: 892  KSNVNHQKETKSLKEDIAAKITEIKAINEN----LEEMKIQCNNLSKEKEHISKELVEYK 947
             + +NH  + KSL++ +A      K I+      LE+ +    N++  K H S +  + +
Sbjct: 836  NAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQ 895

Query: 948  SRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMS 1007
              ++      ++ T+K   L   + D+Q +     +  E  K++   Q+   Q ++D ++
Sbjct: 896  KIYELTKKQESEQTQKETELKIAFSDLQKD----YQVFELQKDQEFRQIEAKQRELDKLA 951

Query: 1008 QEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLE--- 1064
            ++    ++E   ++   + L+    D  Q                  Q+ L +E+ +   
Sbjct: 952  EKNNQVKLE---LDNRFQALQNQKQDTVQ-----------------AQLELEREQHQLNL 991

Query: 1065 TATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXX 1124
              T  N  N      L K RE+L  ++ A+     +    L    K L            
Sbjct: 992  EQTAFNQAN----ESLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQ 1047

Query: 1125 ----XXIQLEKEATE----TKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKER-QY 1175
                   Q EKE T+     K++L  L     SL + + +L  + +K      N  + Q+
Sbjct: 1048 EINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNVELERKREKLATDFTNLNKVQH 1107

Query: 1176 NEEIS--QLNDEITSTQQENESIKKKNDELEGE----VKAMKSTS--------------- 1214
            N +I+  QLN +I     E ++ ++ ++E   +    +K ++S +               
Sbjct: 1108 NTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKL 1167

Query: 1215 --EEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEK 1272
              +++   +K E+    LQ+++ K + +  +      + +++++  K+ + +   N K  
Sbjct: 1168 EFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLV 1227

Query: 1273 EVSELEDKLKASEDK--------NSKY---LELQKESEKIKEELDAKTTELKIQLEKITN 1321
            E+  L     A+++K          KY   L+L++  E+ K++LD K   +  +L K  N
Sbjct: 1228 ELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFAN 1287

Query: 1322 XXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQA-------FEKERKLLNE 1374
                                   K  E  L  L NE + K          FEK+RK   +
Sbjct: 1288 DLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATD 1347

Query: 1375 GSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIK 1434
                  +E  +K    E EL +L  E E +  +++N   +  K S   +E  E ++  + 
Sbjct: 1348 AILASHKEVKKK----EGELQKLLVELETRKTKLNN---DFAKFSRQREE-FENQRLKLL 1399

Query: 1435 SLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXX 1494
             LQ  + +  +      + +  IE   KR +E L  Q +   ++                
Sbjct: 1400 ELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIE 1459

Query: 1495 XXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKS 1554
                               +E+   +L     TI   +++L+  K   ++DI +   ++ 
Sbjct: 1460 RKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDIDSTNKQRK 1519

Query: 1555 DLISRINESEKDIEELKSKLR-IEAKS---GSELETVKQELNNAQEKI------------ 1598
            +L   +NE++   + L  + R I +K      ++ET+K++L++ + ++            
Sbjct: 1520 ELNELLNENKLLQQSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQ 1579

Query: 1599 RINAEENTVLKSKLEDIERELKD---KQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQ 1655
            +   E N +     +  ++++K+      +I  N      L   L   +++ D+T Q  Q
Sbjct: 1580 KYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYLYPWLYPQQKQDDNTLQIRQ 1639

Query: 1656 KSEEERRAEVRKFQVEKSQLDEKAMLLETKY------NDLVNKEQAWKRDEDTVKKTTDS 1709
              E++ +   ++++ E ++L  +  LLE K       + L NK+  + + E  ++K  + 
Sbjct: 1640 LFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQLESQLNNKQSEFSKVESMMEKLLEK 1699

Query: 1710 QR-------QEIEKLAKELD--NLKAENSKLKEANEDRSEIDDLMLLVTDLDEKN 1755
                     Q+I  L K+++  N    +S     +   S+   L+  + +L+++N
Sbjct: 1700 TESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPSYQDSDKQQLLFRIQELEKQN 1754



 Score =  118 bits (295), Expect = 2e-28
 Identities = 231/1115 (20%), Positives = 451/1115 (40%), Gaps = 135/1115 (12%)

Query: 753  TESTHENLTEKLIALTNEHKELD-EKYQILNSSHSSLKE-NFSILETEL--KNVRDSLDE 808
            T+   +++ +KL+AL  E   L+ +K    N   S+L + N    E EL  K++    +E
Sbjct: 310  TKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNE 369

Query: 809  MTQLRD----VLETKDKENQTALLEYKSTIHKQEDSIKTLEKGL-------ETILSQKKK 857
              Q +      LET+ K  Q  + E+K+    + + +   E+ L       +T+L+Q   
Sbjct: 370  FEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASL 429

Query: 858  AEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSN--VNHQKETKS-----LKEDIAA 910
              +   +  + L     E++   +N +  +KE DK    ++ QK+  S     LKE +A 
Sbjct: 430  EYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQ 489

Query: 911  KITEIKAI------------NENL---EEMKIQCNNLSKEKEHISKELVEYKSRFQSHDN 955
            +  E++ +            NE L   +++K    +   E E   +EL E K    + + 
Sbjct: 490  ERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAK---HALER 546

Query: 956  LVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQI 1015
               KL +K K L  N K  Q  NE     ++  K++S+     LQN+ +++ QEK+    
Sbjct: 547  SFIKLEDKEKDL--NTKAQQIANE--FSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQ 602

Query: 1016 ERGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVN 1075
            ER   E+N   L   +   ++                  Q  L+ ++      A+ E   
Sbjct: 603  ERTYFERNAAVLSNRLQQ-KREELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQK 661

Query: 1076 KISELTKTREELEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATE 1135
            +I    K ++  +  L A KNL  E E  ++  EK +                ++ +  +
Sbjct: 662  EILG-KKLQDFSQTSLNASKNLA-EREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQ 719

Query: 1136 TKQQLNSLRANLESLEKE----HEDLAAQLKKYEEQI-----------ANKERQYNEEIS 1180
              Q LN  R+ L++ ++     H D   +L +YE  +           AN+++   +  +
Sbjct: 720  LNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQA 779

Query: 1181 QLNDEITSTQQENE---SIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKK 1237
                E+    +E +   +++KK       +K   S   +  N++++E+D    ++     
Sbjct: 780  YFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFL 839

Query: 1238 KNETNEASLLESIKSVESETVKIKELQDECNF-KEKEVSELEDKLKAS-EDKNSKYLELQ 1295
             ++ ++ SL + + +V+ ET K+ +L+      K++E +E     K    +K S+  ++ 
Sbjct: 840  NHDADQKSLQDQLATVK-ETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIY 898

Query: 1296 KESEKIKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLK 1355
            + ++K + E   K TELKI    +                             E+  ++K
Sbjct: 899  ELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVK 958

Query: 1356 NEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELK-----AKEIDN 1410
             E+  + QA + +++   +    + +E  +    LE       NE+ LK      K+I  
Sbjct: 959  LELDNRFQALQNQKQDTVQAQLELEREQHQL--NLEQTAFNQANESLLKQREQLTKKIQA 1016

Query: 1411 TRSELEK----VSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLE 1466
               EL+K    ++L    L  ++Q+  +  +D+ ++++ K  + +++    +   KR+LE
Sbjct: 1017 FHYELKKRNQFLALKGKRLFAKEQD--QQRKDQEINWRFK--QFEKEYTDFDEAKKRELE 1072

Query: 1467 SLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSME 1526
             L++  R+  +S                                   I     E K+   
Sbjct: 1073 ELEKIRRSLSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQR 1132

Query: 1527 TIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELET 1586
               +++ K     K       NL+ +K  L  +  E +K  E+ K +L+   ++  +LE 
Sbjct: 1133 FSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQ---QATLQLEQ 1189

Query: 1587 VKQELNNAQ-EKIRINAEENTVLKSKLEDIERELKDKQAEIKS--------------NQE 1631
             K E  N   EK R      T  + KL D ++ L  K  E+K+              +Q+
Sbjct: 1190 FKFEKQNFDIEKQRQLVAIKTQCE-KLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQ 1248

Query: 1632 EKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKF----QVEKSQL-------DEKAM 1680
            + +   + L +L++ L+ T+ +  K      A + KF    + EK QL       D+K  
Sbjct: 1249 QLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNR 1308

Query: 1681 LLETKYNDL--VNKEQAWKRD--EDTV-------KKTTDS----------QRQEIEKLAK 1719
            LL+    +L  ++ E   KR   ED +       K+ TD+          +  E++KL  
Sbjct: 1309 LLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLV 1368

Query: 1720 ELDNLKAE-NSKLKEANEDRSEIDDLMLLVTDLDE 1753
            EL+  K + N+   + +  R E ++  L + +L +
Sbjct: 1369 ELETRKTKLNNDFAKFSRQREEFENQRLKLLELQK 1403



 Score =  105 bits (262), Expect = 1e-24
 Identities = 219/1111 (19%), Positives = 450/1111 (40%), Gaps = 157/1111 (14%)

Query: 731  EVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKE 790
            +V+K++ Q  K   EI SL+ E ++      + L     ++ ELD+K   L    + L  
Sbjct: 35   DVDKIENQLLK---EIKSLEDELKNL-----KGLKNQAEDNPELDKKINHLEVDLNRLVN 86

Query: 791  NFSILETELKNVRDSLDEMTQL----RDVLETKDKENQTAL-LEYKSTIHKQEDSIKTLE 845
             +   + +  ++ D + E+  L    ++ L    +EN   L  +Y +  + Q +    L 
Sbjct: 87   EYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLN 146

Query: 846  KGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLK 905
                 I +Q +     IN++ + +   +     ++ N   LQ      N N   E K+  
Sbjct: 147  DFHRLIENQNQT----INRLNQKI---NGNQNLIDNNVALLQ------NPNITVEKKNYL 193

Query: 906  EDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLK 965
             ++      I  +   L++++ Q   LS E E+  +ELV   +  Q   N+   + +   
Sbjct: 194  LNV------IDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQ---NVYENIDQNQI 244

Query: 966  SLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIE 1025
               + Y+  + E   L + ++ +K E   + S L+ KID       +F I     E  ++
Sbjct: 245  QFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDD-----ADFYINARLAE--LD 297

Query: 1026 QLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTRE 1085
             + K +S  +                   +   L  + E         +  I++L +  E
Sbjct: 298  DVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENE 357

Query: 1086 ----ELEAELAAYKNLKNELETKLETSEKAL----XXXXXXXXXXXXXXIQLEKEATETK 1137
                 LE +   ++  +++   KLET  KAL                  +  E+E  E +
Sbjct: 358  LFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKR 417

Query: 1138 QQLNSLRANLESLEKEHEDLAAQLKK--------------YEEQIANKERQYNEEISQLN 1183
            +++++L     SLE EH+  ++QL K              Y ++  +KER   ++  +++
Sbjct: 418  REIDTLLTQ-ASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVD 476

Query: 1184 DEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK----ELKKKN 1239
             E  +  Q  E + ++  ELE E+  +K   ++Q   K++E+     Q+K    + + + 
Sbjct: 477  SE--AIFQLKEKVAQERKELE-ELYLVKKQKQDQ---KENELLFFEKQLKQHQADFENEL 530

Query: 1240 ETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN--------SKY 1291
            E  +  L E+  ++E   +K+++ + + N K ++++    +LK  + K+        ++Y
Sbjct: 531  EAKQQELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEY 590

Query: 1292 LELQKESEKIKEE--------------LDAKTTEL---KIQLEKITNXXXXXXXXXXXXX 1334
              LQ+E +K+ +E              L  K  EL   K  L+++T              
Sbjct: 591  ENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREH 650

Query: 1335 XXXXXXXXXRK---------------NAEEQLEKLKNEIQIKNQAFE-KERKLLNE--GS 1376
                     +K               NA + L + +  I+ K +  E  E++LLN+   +
Sbjct: 651  KELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNA 710

Query: 1377 STITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSL 1436
              I  + ++   +L  E   LQN  +  A   +++  +L +  LS  + L+E Q T+++ 
Sbjct: 711  EVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQ-TLEAN 769

Query: 1437 QDEILSYK---------DKITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXX 1487
            Q +  SY+         DK+ R  +  L++ +    +++++K++L    ++         
Sbjct: 770  QKQ-HSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELD 828

Query: 1488 XXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEE--D 1545
                                     T++  ET+    +E        LE+ ++ AE    
Sbjct: 829  RKTHELNNAFLNHDADQKSLQDQLATVK--ETQKLIDLE----RSALLEKQREFAENVAG 882

Query: 1546 IKNLQHEKSDLISRINESEKDIEELKSKLRIEAK-SGSELETVKQ--ELNNAQEKIRINA 1602
             K     K+  + +I E  K  E  +++   E K + S+L+   Q  EL   QE  +I A
Sbjct: 883  FKRHWSNKTSQLQKIYELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEA 942

Query: 1603 EENTV--LKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEE- 1659
            ++  +  L  K   ++ EL ++   +++ +++       L+  + +L+  Q    ++ E 
Sbjct: 943  KQRELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANES 1002

Query: 1660 ---ERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTV--------KKTTD 1708
               +R    +K Q    +L ++   L  K   L  KEQ  +R +  +        K+ TD
Sbjct: 1003 LLKQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTD 1062

Query: 1709 ---SQRQEIEKLAKELDNLKAENSKLKEANE 1736
               ++++E+E+L K   +L   N +L+   E
Sbjct: 1063 FDEAKKRELEELEKIRRSLSQSNVELERKRE 1093



 Score =  104 bits (259), Expect = 3e-24
 Identities = 191/997 (19%), Positives = 399/997 (40%), Gaps = 167/997 (16%)

Query: 841  IKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKE 900
            IK+LE  L+ +   K +AED   ++ K +  L  ++  +    KN Q +K+   V+   E
Sbjct: 47   IKSLEDELKNLKGLKNQAEDN-PELDKKINHLEVDLNRLVNEYKNFQFQKNHM-VDKVSE 104

Query: 901  TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKL 960
              +L      ++T ++   EN + +  +  NL+  + +   +L ++    ++ +  + +L
Sbjct: 105  LDNLTRFYKNELTRLQ--QENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRL 162

Query: 961  TEKLKS----LANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIE 1016
             +K+      + NN   +Q  N ++     E KN     +  L N++D +  +K    IE
Sbjct: 163  NQKINGNQNLIDNNVALLQNPNITV-----EKKNYLLNVIDQLYNELDQLENQKRLLSIE 217

Query: 1017 RGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNK 1076
              +  + +      + ++ +                  ++S L+ K++       E V+K
Sbjct: 218  YENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQLERKIQLT---KQELVDK 274

Query: 1077 ISELTKTREELEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATET 1136
             S L    ++ +  +       N    +L+   K                 QL  +   T
Sbjct: 275  ESALRVKIDDADFYI-------NARLAELDDVAK-----------------QLSFQDGIT 310

Query: 1137 KQQLNSLRANLESLEKEHEDLAAQLKKYEE--QIA----NKERQYNEEISQLNDEITSTQ 1190
            KQ    +   L +L KE + L  Q + +    Q A    NK +Q NE  ++  +      
Sbjct: 311  KQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLEH----- 365

Query: 1191 QENESIKKKND---ELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLL 1247
            Q+NE  +K++D   +LE E KA++    E  N   ++ + L  Q +EL +K    +  L 
Sbjct: 366  QQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLT 425

Query: 1248 ESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQK--ESEKIKEEL 1305
            ++    E +    + L+D+ N  ++    LE   K   DK    L+ QK  +SE I  +L
Sbjct: 426  QASLEYEHQRESSQLLKDKQNEVKQHFQNLE-YAKKELDKERNLLDQQKKVDSEAI-FQL 483

Query: 1306 DAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAF 1365
              K  + + +LE++                        +K  +++ E L  E Q+K    
Sbjct: 484  KEKVAQERKELEEL-------------------YLVKKQKQDQKENELLFFEKQLKQHQA 524

Query: 1366 EKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENE---LKAKEIDNTRSELE------ 1416
            + E +L         QE  E  + LE   I+L+++ +    KA++I N  S+L+      
Sbjct: 525  DFENEL-----EAKQQELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKS 579

Query: 1417 ---KVSLSN--DELLEEKQ-----------------NTIKSLQDEILSYKDKITRNDEKL 1454
               ++ L N  + L +EKQ                 N ++  ++E+L  K+ +   D+  
Sbjct: 580  ADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETL---DQLT 636

Query: 1455 LSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTI 1514
             S E++   +    KE + + ++                                    I
Sbjct: 637  KSFEQERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEI 696

Query: 1515 ESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEK-------SDLISRINESE--- 1564
            E+ E +L + +         L Q  +S  ++   LQ+ K       +D + ++NE E   
Sbjct: 697  EATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSL 756

Query: 1565 -KDIEELKSK-----------------------------LRIEAKSGSELETVKQELNNA 1594
             K ++EL++                              L +  K   E++ +KQ L++ 
Sbjct: 757  QKRLQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDK 816

Query: 1595 QEKIRINAEENTVLKSKLEDI-------ERELKDKQAEIKSNQEEKELLTSRLKELEQEL 1647
             + + +   E      +L +        ++ L+D+ A +K  Q+  +L  S L E ++E 
Sbjct: 817  HQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREF 876

Query: 1648 DSTQQKAQKSEEERRAEVRKF----QVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTV 1703
                   ++    + ++++K     + ++S+  +K   L+  ++DL    Q ++  +D  
Sbjct: 877  AENVAGFKRHWSNKTSQLQKIYELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQE 936

Query: 1704 KKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSE 1740
             +  +++++E++KLA++ + +K E     +A +++ +
Sbjct: 937  FRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQ 973


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score =  124 bits (310), Expect = 3e-30
 Identities = 151/724 (20%), Positives = 289/724 (39%), Gaps = 73/724 (10%)

Query: 742  LKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKENFSILETELKN 801
            LK ++ +++ +T+   E +TE         KE  E +   N S ++LK++  + E  + N
Sbjct: 103  LKNDVAAIENDTDEDFE-ITEVREVSEGVAKETKESHGDPNDSETTLKDS-KMHEYTMTN 160

Query: 802  VRDSL-----DEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKK 856
             +  L     +  T   DVL       Q      K  + KQ+     L+  L++  S   
Sbjct: 161  GKAPLHTSINNSSTSSNDVLLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSD 220

Query: 857  KAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIK 916
            K  + + K    L       + ++E    L   K+    N + + K L+++       I 
Sbjct: 221  KINEKVGKYKSCL-------ETLQERIATLTSHKN----NQETKLKDLRQNHQLYQRRIS 269

Query: 917  AINENLEEMKIQCNNLSKEKEHISKEL------VEYKSRFQSHDNLVAKLTEKLKSLANN 970
                ++E +    N+L K K+    EL      +EY  R    D+   +L+E+    ++ 
Sbjct: 270  GFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKR--ELDDCSGQLSEEKIKNSSL 327

Query: 971  YKDMQAENESLIKAVE----ESKNESSIQLSNLQNKIDSMSQEK--ENFQIERGSIEKNI 1024
             ++M    E +IK++E    E K    +Q +  + ++  + ++K  ++F + + ++   +
Sbjct: 328  IQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGL 387

Query: 1025 EQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLE-TATTANDENVNKISELTKT 1083
                  +S   +T                 Q   +KE LE   +++ DE    I+EL+ T
Sbjct: 388  RNTTVELSSNTET-------------MLKQQYEDIKENLEQKMSSSKDEMAKTINELSVT 434

Query: 1084 REEL-----EAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQ 1138
            ++ L     E  L +  N++  L +++  + + L                L K       
Sbjct: 435  QKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIV 494

Query: 1139 QLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQL---NDEITSTQQENES 1195
            Q N     ++ LE E   L++Q  +    +  KE QY + + +L   N EI+    + +S
Sbjct: 495  QSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQS 554

Query: 1196 IKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVES 1255
            + +KN+ L  E+K ++   E+ +NL  +            K   E   +S  E +K++ S
Sbjct: 555  LTEKNENLSNELKKVQDQLEKLNNLNIT-----------TKSNYENKISSQNEIVKALVS 603

Query: 1256 ETVKIKE-LQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKE---ELDAKTTE 1311
            E   +K+ +Q     KE E  +   KL+A +  N +  +L  E  ++K    EL+ +   
Sbjct: 604  ENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRH 663

Query: 1312 LKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKL 1371
            LK  LEK                          K+ ++ +   K E+Q   ++ E+  K 
Sbjct: 664  LKNCLEK----KETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKN 719

Query: 1372 LNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQN 1431
            L +   +  +E  +KI  LE+     +NE   K  +     S+  K + +   L      
Sbjct: 720  LQQKVQSQKRELEQKIKELEEIKNHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSA 779

Query: 1432 TIKS 1435
             I S
Sbjct: 780  AIHS 783



 Score = 79.7 bits (195), Expect = 7e-17
 Identities = 139/723 (19%), Positives = 293/723 (40%), Gaps = 90/723 (12%)

Query: 1062 KLETATTANDENVN-KISELTKTREELEAELAAYKNLKNELETKLETSE---------KA 1111
            K + A   ND + + +I+E+ +  E +  E        N+ ET L+ S+         KA
Sbjct: 104  KNDVAAIENDTDEDFEITEVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKA 163

Query: 1112 LXXXXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANK 1171
                           + LE   T T++  ++L+  L+  ++++  L  +L+ Y    A+ 
Sbjct: 164  PLHTSINNSSTSSNDVLLEA-FTNTQRICSNLKQELQKQQQDNAKLKVRLQSY----ASN 218

Query: 1172 ERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSE---EQSNLKKSEIDAL 1228
              + NE++ +    + + Q+   ++    +  E ++K ++   +    + +  K+ I+ L
Sbjct: 219  SDKINEKVGKYKSCLETLQERIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENL 278

Query: 1229 NLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKE--------VSEL--- 1277
            N  I +L K  +  +A L++  K +E     +K   D+C+ +  E        + E+   
Sbjct: 279  NKTINDLGKNKKEADAELMKKGKEIEY----LKRELDDCSGQLSEEKIKNSSLIQEMGKN 334

Query: 1278 -EDKLKA-----SEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNXXXXXXXXXX 1331
             E+ +K+     SEDK    L+  K  E++  +L  K  +    + K T           
Sbjct: 335  REEMIKSIENFFSEDKAHHLLQFNKFEERV-HDLFEKKLQKHFDVAKDT-------LNVG 386

Query: 1332 XXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKER-KLLNEGSSTITQEYSEKINTL 1390
                            ++Q E +K  ++ K  + + E  K +NE S  +TQ+    I  +
Sbjct: 387  LRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELS--VTQK--GLIMGV 442

Query: 1391 EDELIRLQ-NENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIK---SLQDEILSYKDK 1446
            ++EL+    N       E++NTR EL          L++   T K   SL++ + +YK +
Sbjct: 443  QEELLTSSGNIQTALVSEMNNTRQEL----------LDDASQTAKNYASLENLVKAYKAE 492

Query: 1447 ITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1506
            I +++E       +  + LES +  L + +                              
Sbjct: 493  IVQSNEY-----EERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQ 547

Query: 1507 XXXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKD 1566
                  ++      L + ++ ++   EKL     + + + +N    +++++  +  SE D
Sbjct: 548  ISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKAL-VSEND 606

Query: 1567 IEELKSKLRIEAKSGSELE-TVKQEL---NNAQ-EKIRINAEENTVLKSKLEDIERELK- 1620
              + + +  +E K   + + T K E    NN Q +K+ +   +    + +LE+  R LK 
Sbjct: 607  TLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKN 666

Query: 1621 ----------DKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQV 1670
                      +  +++K+ +++  +L S  +++  E    Q   +  EE  +   +K Q 
Sbjct: 667  CLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQS 726

Query: 1671 EKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSK 1730
            +K +L++K   LE   N   N+    K+      K +DS ++         +N  A +S 
Sbjct: 727  QKRELEQKIKELEEIKNHKRNEPS--KKGTQNFTKPSDSPKKNATTSNLFPNNSAAIHSP 784

Query: 1731 LKE 1733
            +K+
Sbjct: 785  MKK 787



 Score = 70.9 bits (172), Expect = 3e-14
 Identities = 122/617 (19%), Positives = 246/617 (39%), Gaps = 80/617 (12%)

Query: 710  RIRTALSHDPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTN 769
            RI T  SH  ++E   K   +  +  QR+ +  K  I +L        +N  E    L  
Sbjct: 239  RIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMK 298

Query: 770  EHKELDEKYQILNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLE 829
            + KE++   + L+     L E      + ++ +  + +EM +  +   ++DK +   LL+
Sbjct: 299  KGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHH--LLQ 356

Query: 830  YKSTIHKQEDSI-KTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQK 888
            +     +  D   K L+K  +        A+D +N     L   + E+ +  E     Q 
Sbjct: 357  FNKFEERVHDLFEKKLQKHFDV-------AKDTLNV---GLRNTTVELSSNTETMLKQQY 406

Query: 889  EKDKSNVNHQKETKSLKEDIAAKITEIKAINENL-----EEMKIQCNNLS----KEKEHI 939
            E  K N+  +++  S K+++A  I E+    + L     EE+     N+      E  + 
Sbjct: 407  EDIKENL--EQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNT 464

Query: 940  SKELVEYKSR----FQSHDNLVA----------KLTEKLKSLANNYKDMQAENESLIKAV 985
             +EL++  S+    + S +NLV           +  E++K L +    + ++   +I ++
Sbjct: 465  RQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSL 524

Query: 986  --EESKNES--------SIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKK----TI 1031
              +E++ E         +I++S +  K  S++++ EN   E   ++  +E+L      T 
Sbjct: 525  GTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTK 584

Query: 1032 SDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELE--- 1088
            S+ E                       +++ +E       ++  K+    K  E+L+   
Sbjct: 585  SNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLN 644

Query: 1089 AELAAYKNLKNELETK-------LETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLN 1141
             E+   K  + ELE +       LE  E  +              I L+ E  +   +  
Sbjct: 645  VEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKL 704

Query: 1142 SLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKND 1201
             L+ NLESLE+  ++L       ++++ +++R+  ++I +L  E     + NE  KK   
Sbjct: 705  ELQDNLESLEEVTKNL-------QQKVQSQKRELEQKIKEL--EEIKNHKRNEPSKKGTQ 755

Query: 1202 ELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIK 1261
                   + K  +   SNL  +   A++  +K+  K +  +++ +  S      ET K  
Sbjct: 756  NFTKPSDSPKKNA-TTSNLFPNNSAAIHSPMKKCPKVDHISKSRINSS-----KETSK-- 807

Query: 1262 ELQDECNFKEKEVSELE 1278
               DE +       +LE
Sbjct: 808  -FNDEFDLSSSSNDDLE 823



 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 116/614 (18%), Positives = 238/614 (38%), Gaps = 134/614 (21%)

Query: 1185 EITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEA 1244
            EIT  ++ +E + K+  E  G+       ++ ++ LK S++    +            +A
Sbjct: 119  EITEVREVSEGVAKETKESHGD------PNDSETTLKDSKMHEYTMT---------NGKA 163

Query: 1245 SLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKY-LELQK---ESEK 1300
             L  SI +  S T     L +     ++  S L+ +L+  +  N+K  + LQ     S+K
Sbjct: 164  PLHTSINN--SSTSSNDVLLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDK 221

Query: 1301 IKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQI 1360
            I E++    + L+   E+I                        + N E +L+ L+   Q+
Sbjct: 222  INEKVGKYKSCLETLQERIATLTSH------------------KNNQETKLKDLRQNHQL 263

Query: 1361 KNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSL 1420
              +     +  +   + TI      K    + EL++   E E   +E+D+   +L +  +
Sbjct: 264  YQRRISGFKTSIENLNKTINDLGKNK-KEADAELMKKGKEIEYLKRELDDCSGQLSEEKI 322

Query: 1421 SNDELLEE----KQNTIKSLQDEILSYKD----KITRNDEKLLSI-ERDNKRDLESLKEQ 1471
             N  L++E    ++  IKS+++     K     +  + +E++  + E+  ++  +  K+ 
Sbjct: 323  KNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDT 382

Query: 1472 LRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKS 1531
            L     +                                     + ET LK   E I+++
Sbjct: 383  LNVGLRNTTVELSS------------------------------NTETMLKQQYEDIKEN 412

Query: 1532 -DEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQE 1590
             ++K+  SK    + I  L   +  LI  + E     E L S   I+    SE+   +QE
Sbjct: 413  LEQKMSSSKDEMAKTINELSVTQKGLIMGVQE-----ELLTSSGNIQTALVSEMNNTRQE 467

Query: 1591 L----------------------------NNAQEKIR--------INAEENTVLKS---- 1610
            L                            N  +E+I+        +++++N ++ S    
Sbjct: 468  LLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTK 527

Query: 1611 --KLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKF 1668
              + ED+ ++L+ K  EI     +++ LT + + L  EL   Q + +K           +
Sbjct: 528  EAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNY 587

Query: 1669 QVEKSQLDE--KAML-----LETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKEL 1721
            + + S  +E  KA++     L+ +   LV  ++  ++D  T  +      ++++KL  E+
Sbjct: 588  ENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEV 647

Query: 1722 DNLKAENSKLKEAN 1735
              LKA   +L+E N
Sbjct: 648  VQLKAHELELEEQN 661


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil protein,
            putative structural protein involved in cytosceleton
            [Mycoplasma pneumoniae]
          Length = 1033

 Score = 94.7 bits (234), Expect = 2e-21
 Identities = 143/648 (22%), Positives = 273/648 (42%), Gaps = 110/648 (16%)

Query: 1152 KEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEG-----E 1206
            K  ED A Q    +++IA K+ Q  +  +Q+  E+   Q E   +     E        +
Sbjct: 287  KPAEDSAHQSAVLDKEIATKQAQLQQLQAQI--ELRQAQLETPPVTYMGVEEYKLLPVQD 344

Query: 1207 VKAMKSTSEEQSNLKKSEID-------ALNLQIKE-LKKKNETNEASLLESIKSVESETV 1258
            V  ++ T   +  L + ++D       AL +Q++E L K  + +++ +L+          
Sbjct: 345  VVPVQPTVSFEMTLLQEQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQE--------- 395

Query: 1259 KIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELD---AKTTELKIQ 1315
            +I+ LQ++     +E++EL+ KL  S++ +     L++E+  +K+ L     +  +L   
Sbjct: 396  RIELLQNQNTNLTQELNELQQKLFKSQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFV 455

Query: 1316 LEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNEG 1375
            LEK                              EQL++ K+ + ++ + ++ + K   E 
Sbjct: 456  LEKQL----------------------------EQLQQDKHSLTLQIEQYKFDSKKHQEQ 487

Query: 1376 SSTITQEYSEKINTLEDELIRLQNENE-LKAKEIDNTRSELEKVSLSNDELLEEKQNTIK 1434
             + I    SE IN+LE E+I L+  N+ L   E +N   + E   L   +L +E      
Sbjct: 488  LALIPSLRSE-INSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRN 546

Query: 1435 SLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXX 1494
             L+   L   D    +D KL  +E +     +  +EQL   Q                  
Sbjct: 547  LLKQYELMRAD----SDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQ------ 596

Query: 1495 XXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSDEKLEQSKKS-------AEEDIK 1547
                               +++   EL  + +   +    LEQ   S       AEE+++
Sbjct: 597  -------------------VKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQ 637

Query: 1548 NLQHEKSDLISRINESE---KDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEE 1604
             L    S+L +++N  E   K+     SK     K   +LE  + +L+  QE++    ++
Sbjct: 638  ALGITNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQ--QLEQTQFDLSLTQEQLATFKQQ 695

Query: 1605 NTVLKSKLEDIERELKDKQAE---IKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEER 1661
            N  L  KL   E +L   Q     +   Q + ELL     +L+ E + TQQ+  +++ E 
Sbjct: 696  NQSLTDKLMASETQLNHLQQSDENLTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNEL 755

Query: 1662 RA---EVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLA 1718
             A   ++  F+    +L +K   ++ + +DL   +  W+          D   Q+ E++ 
Sbjct: 756  DAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQ 815

Query: 1719 KELDNL---KAENSKLKEA-NEDRSEIDDLMLLVTDLDEKNAKYRSKL 1762
             E  NL   +AE+  L+E+ N+ ++E++++   +T+L+E NA+Y+  L
Sbjct: 816  HEHSNLAQIQAEHELLQESYNKVKAELNEIQ--ITNLNEANAQYQDLL 861



 Score = 79.7 bits (195), Expect = 7e-17
 Identities = 176/921 (19%), Positives = 368/921 (39%), Gaps = 160/921 (17%)

Query: 760  LTEKLIALTNEHKELDEKYQI--LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLE 817
            L ++L+ +   H  ++E   +  +  +  + + +FSI   +  N+ ++L +   ++    
Sbjct: 232  LVDELVTVPLTHTLVNESAPVTPVVVTSPAAEHSFSITTVDKANLTNALSQTVVIKPA-- 289

Query: 818  TKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQ 877
             +D  +Q+A+L+ +  I  ++  ++ L+  +E  L Q +     +  MG + + L     
Sbjct: 290  -EDSAHQSAVLDKE--IATKQAQLQQLQAQIE--LRQAQLETPPVTYMGVEEYKLLPVQD 344

Query: 878  AVEEN------CKNLQKEKDKSNVNHQKETKSLKEDIAAKIT--EIKAINENLEEMKIQC 929
             V            LQ++ DK+  ++      L+E +A  +   +   + E +E ++ Q 
Sbjct: 345  VVPVQPTVSFEMTLLQEQLDKALKHNAALQIQLEEQLAKPLQYDQSPVLQERIELLQNQN 404

Query: 930  NNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLA----NNYKDMQAENESLIKAV 985
             NL++E   + ++L  +KS  Q++  L+A+L E+ ++L     NN  +    N  L K +
Sbjct: 405  TNLTQELNELQQKL--FKS--QNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVLEKQL 460

Query: 986  EE-SKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXXX 1044
            E+  +++ S+ L   Q K DS   +++   I   S+   I  L+  +  L+QT       
Sbjct: 461  EQLQQDKHSLTLQIEQYKFDSKKHQEQLALIP--SLRSEINSLETEVISLKQT------- 511

Query: 1045 XXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETK 1104
                            ++L      N+    +I +L +T+  L  E   Y+NL  + E  
Sbjct: 512  ---------------NQRLSLIERENNFLKTEIKQLRETK--LNDENTKYRNLLKQYELM 554

Query: 1105 LETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKY 1164
               S+  L               +LE E     Q               H++  AQL+++
Sbjct: 555  RADSDAKLK--------------ELEHEQHLAHQH--------------HQEQLAQLQRH 586

Query: 1165 EEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSE 1224
             E +  +  Q      +L       +Q+   +++KN  L   ++A +   +         
Sbjct: 587  NEALVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSEL 646

Query: 1225 IDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKAS 1284
             + LN+     K+K   +  +L  + + +E     +   Q++    +++   L DKL AS
Sbjct: 647  QNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMAS 706

Query: 1285 E-------DKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXX 1337
            E         +    +LQ + E ++E  +      K+Q ++  +                
Sbjct: 707  ETQLNHLQQSDENLTQLQTQHELLQESYN------KLQ-DEANHTQQQFHQAQNELDAAH 759

Query: 1338 XXXXXXRKNAEEQLEKLKNEIQIKNQAFEKER-----KLLNEGSSTITQEYSEKINTLED 1392
                  ++N EE  +K  N   I+N+  +  R     + LN   + +  +Y+++   ++ 
Sbjct: 760  QQLALFKQNNEELTDKCSN---IQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQH 816

Query: 1393 E---LIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITR 1449
            E   L ++Q E+EL  +  +  ++EL ++ ++N        N   +   ++LS  + +  
Sbjct: 817  EHSNLAQIQAEHELLQESYNKVKAELNEIQITN-------LNEANAQYQDLLSAYELLQS 869

Query: 1450 NDEKL---LSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1506
            N  KL   L +      + + L ++L    +S                            
Sbjct: 870  NHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQT------------------------ 905

Query: 1507 XXXXXXTIESNETELKSSMETIRK----SDEKLEQSKKSAEEDIKNLQHEKSDLISRINE 1562
                     +  T+L+++   ++     SDE LEQ  +   E  + LQ      ++ ++E
Sbjct: 906  --------HAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQN----LALVHE 953

Query: 1563 SEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDK 1622
             +    EL S    E K+  + ETVK E+   +++I +  E+   LK +  DI  E K+ 
Sbjct: 954  LQY-FNELNSSQTHEIKTKQD-ETVK-EVIIVEKEIPVPPEKKPRLKKR--DIVIENKED 1008

Query: 1623 QAEIKSNQEEKELLTSRLKEL 1643
                 S +E  +    RL ++
Sbjct: 1009 ALGKLSKKERIQAYAERLAKI 1029



 Score = 70.9 bits (172), Expect = 3e-14
 Identities = 114/606 (18%), Positives = 245/606 (40%), Gaps = 82/606 (13%)

Query: 720  DEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQ 779
            D+ P+ +   E +E LQ Q T L  E+  LQ +   +  N +  L  L  E++ L +  Q
Sbjct: 388  DQSPVLQ---ERIELLQNQNTNLTQELNELQQKLFKSQNN-SLLLARLEEENRTLKQHLQ 443

Query: 780  ILNSSHSSLKENFSILETELKNVRDSLDEMT-QLRDV-LETKDKENQTALL-EYKSTIHK 836
              N+   + + NF +LE +L+ ++     +T Q+     ++K  + Q AL+   +S I+ 
Sbjct: 444  --NNLPEANQLNF-VLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINS 500

Query: 837  QEDSIKTLEKG-------------LETILSQKKKAE-DGINKMGKDLFALSREMQAVEE- 881
             E  + +L++              L+T + Q ++ + +  N   ++L      M+A  + 
Sbjct: 501  LETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDA 560

Query: 882  NCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISK 941
              K L+ E+  ++ +HQ++   L+    A + E+  +     E+ +      ++K  + +
Sbjct: 561  KLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKATNFELGLAAQGFEQQKVVLEQ 620

Query: 942  ELVEYKSRFQSHDNLV-------AKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSI 994
            +     +  Q+ +  V       ++L  +L  L   +K+  A +   +   ++   ++  
Sbjct: 621  KNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQF 680

Query: 995  QLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTXXXX------------- 1041
             LS  Q ++ +  Q+ ++   +  + E  +  L+++  +L Q                  
Sbjct: 681  DLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQLQTQHELLQESYNKLQDE 740

Query: 1042 XXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNE- 1100
                         ++    ++L      N+E  +K S +     +L      ++NL  E 
Sbjct: 741  ANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEH 800

Query: 1101 --LETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLNSLR-ANLESLEKEHEDL 1157
              L+ K    ++ +                L++   + K +LN ++  NL     +++DL
Sbjct: 801  NLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDL 860

Query: 1158 AA--------------------QLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIK 1197
             +                    Q+   ++Q+A K    ++ +SQ + E+T  Q    +++
Sbjct: 861  LSAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQ 920

Query: 1198 KK---NDELEGEVKAMKSTSEEQSNLKKSEIDALNLQ-IKELKKKNETNEASLLESIKSV 1253
                 +DEL  +          Q  L+K  +   NL  + EL+  NE N +S    IK+ 
Sbjct: 921  ATPPVSDELLEQF--------NQVQLEKQRLLQQNLALVHELQYFNELN-SSQTHEIKTK 971

Query: 1254 ESETVK 1259
            + ETVK
Sbjct: 972  QDETVK 977



 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 1586 TVKQELNNAQEKIRINAEENTVLKSKLED-IERELKDKQAEIKSNQEEKELLTSRLKELE 1644
            TV  E+   QE++    + N  L+ +LE+ + + L+  Q+ +   QE  ELL ++   L 
Sbjct: 351  TVSFEMTLLQEQLDKALKHNAALQIQLEEQLAKPLQYDQSPVL--QERIELLQNQNTNLT 408

Query: 1645 QELDSTQQKAQKS----------EEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQ 1694
            QEL+  QQK  KS          EEE R   +  Q    + ++   +LE +   L   + 
Sbjct: 409  QELNELQQKLFKSQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKH 468

Query: 1695 AWKRDEDTVKKTTDSQRQE---IEKLAKELDNLKAENSKLKEANEDRSEIDD-------- 1743
            +     +  K  +   +++   I  L  E+++L+ E   LK+ N+  S I+         
Sbjct: 469  SLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTE 528

Query: 1744 -LMLLVTDLDEKNAKYRSKLK 1763
               L  T L+++N KYR+ LK
Sbjct: 529  IKQLRETKLNDENTKYRNLLK 549


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score = 84.3 bits (207), Expect = 3e-18
 Identities = 140/731 (19%), Positives = 307/731 (41%), Gaps = 129/731 (17%)

Query: 769  NEHKELDEKYQILNSSHSSLK-ENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTAL 827
            N+ K  +E+ Q ++ + +  + ++ S+L  E+K     L       +  + + K   T  
Sbjct: 93   NQLKTREEEQQTVDQTMAFQEVDDQSVLTKEIKTGFQELKPSVITAEDDKDEIKPEATKQ 152

Query: 828  LEYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQ 887
            + ++   ++  + I   +K    I S  K  E    +   D +++    +A+    K +Q
Sbjct: 153  VSFEELFNQPSEEINETKKPEVQIFSTDKVKEP---EQFDDFYSIENLTKAINPVHKTIQ 209

Query: 888  KEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKE----KEHISKEL 943
             +++       K  + LKE    K  + +  + N +E+ ++  +L K+    KE+ + ++
Sbjct: 210  YDQNDDQPFVVK--RILKEQHPTKKVD-ELDDYNNKELLLENADLKKQIDDLKENNNDQI 266

Query: 944  VEYKSRFQSHDNLVAKLTEKLKSLANNYK---DMQAENESLIKAVEESKNESSIQLSNLQ 1000
             + +   Q  D+L  +L+E+     +  K   D+  EN  L + ++       + ++ L 
Sbjct: 267  FDLE---QEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKP----VAINPLS 319

Query: 1001 NKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLK 1060
               D +++E EN + E+  +   ++ LK   S+++Q                  QI+ L+
Sbjct: 320  ---DEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNN--------QINELQ 368

Query: 1061 EKLETATTAND-------ENVNKISELTKTREELEA-ELAAYKNLKNELETKLETSEKAL 1112
             +L TA  AN        EN    +EL K  +     E   Y +L N+ E   + +E   
Sbjct: 369  NQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENETKF 428

Query: 1113 XXXXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKE 1172
                          +Q++++A     Q       + +L+ E++ L  ++    E   +K+
Sbjct: 429  DK------------LQVKQQALNLDYQ-----KTISALKHENDVLLDEI----EWTRSKD 467

Query: 1173 RQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQI 1232
              +N   +   ++  +  ++   +  +N +L+ ++  ++  +EE+SNL  +++  L  Q+
Sbjct: 468  NDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQL 527

Query: 1233 KELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYL 1292
            K+   +N  N A   + + ++E   + + E          ++++LED+L  SE+ N+   
Sbjct: 528  KD--SQNLFNVAQ--DKLATLEEVNLALNE----------KINDLEDELSGSENSNNLLA 573

Query: 1293 ELQKESEKIKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLE 1352
            +LQ + E ++E       +LK   EK+                          +A EQ +
Sbjct: 574  KLQADHEILQESYG----KLKTDFEKLKKNKL--------------------NDANEQYQ 609

Query: 1353 KLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTR 1412
             L +  +  N   EK ++ L+   S   Q   ++IN+LE                  N +
Sbjct: 610  DLLSAFEETNSELEKAKQSLSASDSENNQ-LKQQINSLE------------------NAK 650

Query: 1413 SELEKVSLSNDELLEEKQNTIKSLQDEI----------LSYKDKITRNDEKLLSIERDNK 1462
             EL+   +++DE L+E + T+K  ++++          L Y + I+ N  + +    D  
Sbjct: 651  KELQFTPVTSDEHLDELE-TLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDED 709

Query: 1463 RDLESLKEQLR 1473
            + +E  K +++
Sbjct: 710  KPVEIKKPRIK 720



 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 154/713 (21%), Positives = 296/713 (41%), Gaps = 133/713 (18%)

Query: 656  DNYASRIK-----QFKKDSYFSKVDMNEDSILTPELDETGLPKVYFSTYFIQLFNENIYR 710
            ++YA+++K     Q   D   +  ++++ S+LT E+ +TG             F E    
Sbjct: 89   NHYANQLKTREEEQQTVDQTMAFQEVDDQSVLTKEI-KTG-------------FQELKPS 134

Query: 711  IRTALSHDPDE---EPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIAL 767
            + TA   D DE   E   ++SFEE   L  Q ++   E    + +  ST +         
Sbjct: 135  VITA-EDDKDEIKPEATKQVSFEE---LFNQPSEEINETKKPEVQIFSTDK--------- 181

Query: 768  TNEHKELDEKYQI------LNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDK 821
              E ++ D+ Y I      +N  H +++ + +  + +   V+  L E    + V E  D 
Sbjct: 182  VKEPEQFDDFYSIENLTKAINPVHKTIQYDQN--DDQPFVVKRILKEQHPTKKVDELDDY 239

Query: 822  ENQTALLEYKSTIHKQEDSIKT--------LEKGLETI---LSQKK-------KAEDGIN 863
             N+  LLE  + + KQ D +K         LE+ ++ +   LS++K       K +D + 
Sbjct: 240  NNKELLLE-NADLKKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLL 298

Query: 864  KMGKDLF--------ALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEI 915
            +  +DL+        A++     V E  +NL++EK   + +     K+   ++  ++  +
Sbjct: 299  QENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLS-DQLDALKNKSSNVQQQLALL 357

Query: 916  KAINENLEEMKIQCNNLSKEKEHISKELVEYKSRF------QSHDNLVAKLTEKLKSLAN 969
              +N  + E++ Q     +  + +  +LVE ++ F      + HDN      EK   L N
Sbjct: 358  PVLNNQINELQNQLLTAREANQRL--DLVEQENDFLKNELKKLHDNTSNDENEKYDDLLN 415

Query: 970  NYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKK 1029
             Y+ +  ENE+    ++  +   ++   + Q  I ++  E +    E       IE  + 
Sbjct: 416  QYELLFDENETKFDKLQVKQQALNL---DYQKTISALKHENDVLLDE-------IEWTRS 465

Query: 1030 TISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREE--- 1086
              +D   T                 Q   L EKL   T  N +  +KI+EL +  EE   
Sbjct: 466  KDNDFNNTKNSFEE-----------QKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSN 514

Query: 1087 --------LEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQ 1138
                    L+ +L   +NL N  + KL T E+                  LE E + ++ 
Sbjct: 515  LNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNEKIN-------DLEDELSGSEN 567

Query: 1139 QLN---SLRANLESLEKEHEDLAA---QLKKYEEQIANKERQ--------YNEEISQLND 1184
              N    L+A+ E L++ +  L     +LKK +   AN++ Q         N E+ +   
Sbjct: 568  SNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQ 627

Query: 1185 EITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEA 1244
             ++++  EN  +K++ + LE   K ++ T    S+    E++ L ++ ++L  +N+  + 
Sbjct: 628  SLSASDSENNQLKQQINSLENAKKELQFTPVT-SDEHLDELETLKIEKEQLFLENQALQN 686

Query: 1245 SLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKE 1297
             L        ++T +IKE  DE    E +   ++ +    ++K+ K  +L K+
Sbjct: 687  QLQYFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKK 739



 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 123/638 (19%), Positives = 254/638 (39%), Gaps = 79/638 (12%)

Query: 1137 KQQLNSLRANLESLEKEHE--DLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENE 1194
            K  LN     L++ E+E +  D     ++ ++Q     ++      +L   + + + + +
Sbjct: 85   KNVLNHYANQLKTREEEQQTVDQTMAFQEVDDQSV-LTKEIKTGFQELKPSVITAEDDKD 143

Query: 1195 SIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNL-QIKELKKKNETNEASLLESIKSV 1253
             IK +  +     +     SEE +  KK E+   +  ++KE ++ ++      L    + 
Sbjct: 144  EIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIENLTKAINP 203

Query: 1254 ESETVKIKELQDECNFKEKEVSELEDKLKASE--DKNSKYL-----ELQKESEKIKEELD 1306
              +T++  +  D+    ++ + E     K  E  D N+K L     +L+K+ + +KE  +
Sbjct: 204  VHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNN 263

Query: 1307 AKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEK-------LKNEIQ 1359
             +  +L+ +++ +                         ++  EQL+        L +E+ 
Sbjct: 264  DQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPLSDEVN 323

Query: 1360 IKNQAFEKERKLLNE------GSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRS 1413
             + +  ++E+ LL++        S+  Q+    +  L +++  LQN+  L A+E +    
Sbjct: 324  EELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQL-LTAREANQ--- 379

Query: 1414 ELEKVSLSNDELLEE-KQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQL 1472
             L+ V   ND L  E K+    +  DE   Y D +  N  +LL  E + K D   +K+Q 
Sbjct: 380  RLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLL--NQYELLFDENETKFDKLQVKQQ- 436

Query: 1473 RAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSD 1532
                                                     ++     L   +E  R  D
Sbjct: 437  -----------------------------ALNLDYQKTISALKHENDVLLDEIEWTRSKD 467

Query: 1533 EKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAK-SGSELETVKQEL 1591
                 +K S EE  K L  + + L  +  + +  I EL+     ++  + ++L  ++Q+L
Sbjct: 468  NDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQL 527

Query: 1592 -------NNAQEKIRINAEENTVLKSKLEDIERELKDKQAE---IKSNQEEKELLTSRLK 1641
                   N AQ+K+    E N  L  K+ D+E EL   +     +   Q + E+L     
Sbjct: 528  KDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYG 587

Query: 1642 ELEQELDSTQQ-KAQKSEEERRAEVRKFQVEKSQLDEKAMLL---ETKYNDL---VNKEQ 1694
            +L+ + +  ++ K   + E+ +  +  F+   S+L++    L   +++ N L   +N  +
Sbjct: 588  KLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLE 647

Query: 1695 AWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLK 1732
              K++      T+D    E+E L  E + L  EN  L+
Sbjct: 648  NAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQ 685



 Score = 73.6 bits (179), Expect = 5e-15
 Identities = 155/821 (18%), Positives = 315/821 (38%), Gaps = 120/821 (14%)

Query: 796  ETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQK 855
            E E+ +  + LDE T L+++++   + N       K T    E ++  LEK     + + 
Sbjct: 6    ELEISDFDNELDEKTLLKELVQ---RTNNILFSPSKITAIPFERNL--LEKTFFGTVDEA 60

Query: 856  KKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEI 915
            +K +  ++     +            + K L K+ DK+ +NH       +E+    + + 
Sbjct: 61   EKEKSIVSFFNWMI------------DLKVLDKKWDKNVLNHYANQLKTREEEQQTVDQT 108

Query: 916  KAINE-------------NLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTE 962
             A  E               +E+K        +K+ I  E  +  S     + L  + +E
Sbjct: 109  MAFQEVDDQSVLTKEIKTGFQELKPSVITAEDDKDEIKPEATKQVS----FEELFNQPSE 164

Query: 963  KLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIE-RGSIE 1021
            ++    N  K  + +  S  K  E  + +    + NL   I+ + +  +  Q + +  + 
Sbjct: 165  EI----NETKKPEVQIFSTDKVKEPEQFDDFYSIENLTKAINPVHKTIQYDQNDDQPFVV 220

Query: 1022 KNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELT 1081
            K I + +     +++                  QI  LKE        ND+  +   E+ 
Sbjct: 221  KRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKEN------NNDQIFDLEQEID 274

Query: 1082 KTREELEAELAAYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLN 1141
              +  L  E + + + K   +  L+ +                   QL+ +        +
Sbjct: 275  DLKRRLSEEKSKHLHTKKLQDDLLQENRDLYE--------------QLQNKPVAINPLSD 320

Query: 1142 SLRANLESLEKEHEDLAAQLKKYEEQIANKERQY------NEEISQLNDEITSTQQENES 1195
             +   LE+L++E   L+ QL   + + +N ++Q       N +I++L +++ + ++ N+ 
Sbjct: 321  EVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTAREANQR 380

Query: 1196 ---IKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKS 1252
               ++++ND L+ E+K +   +    N K    D LN Q + L  +NET    L      
Sbjct: 381  LDLVEQENDFLKNELKKLHDNTSNDENEKYD--DLLN-QYELLFDENETKFDKL-----Q 432

Query: 1253 VESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTEL 1312
            V+ + + + + Q   +  + E   L D+++ +  K++ +   +   E+ K+ LD K   L
Sbjct: 433  VKQQALNL-DYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGL 491

Query: 1313 KIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLL 1372
             IQ +++ +                       +   +  + L N  Q K    E+    L
Sbjct: 492  TIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLAL 551

Query: 1373 NEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNT 1432
            NE           KIN LEDEL   +N N L AK              ++ E+L+E    
Sbjct: 552  NE-----------KINDLEDELSGSENSNNLLAK------------LQADHEILQESYGK 588

Query: 1433 IKSLQDEILSYKDKITRNDEK---LLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXX 1489
            +K+  +++   K+K+   +E+   LLS   +   +LE  K+ L +A +S           
Sbjct: 589  LKTDFEKL--KKNKLNDANEQYQDLLSAFEETNSELEKAKQSL-SASDSENNQLKQQINS 645

Query: 1490 XXXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRK--------SDEKLEQSKKS 1541
                                   T++  + +L    + ++         S  + E+ K++
Sbjct: 646  LENAKKELQFTPVTSDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEA 705

Query: 1542 AEED----IKNLQHEKSDLISRINESEKDIEELKSKLRIEA 1578
            ++ED    IK  + +K D +  I   +  + +L  K RI+A
Sbjct: 706  SDEDKPVEIKKPRIKKRDFV--IQNKDDKLAKLSKKERIQA 744



 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 113/603 (18%), Positives = 238/603 (39%), Gaps = 54/603 (8%)

Query: 663  KQFKKDSYFSKVDMNEDSILTPEL-----DETGLPKVYFSTYFIQLFNENIYRIRTALSH 717
            KQ   +  F++     +    PE+     D+   P+ +   Y I+   + I  +   + +
Sbjct: 151  KQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSIENLTKAINPVHKTIQY 210

Query: 718  DP-DEEP--INKISFEE-----VEKLQRQCTK-LKGEITSLQTETESTHENLTEKLIALT 768
            D  D++P  + +I  E+     V++L     K L  E   L+ + +   EN  +++  L 
Sbjct: 211  DQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLE 270

Query: 769  NEHKELDEKYQILNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALL 828
             E  +L  +     S H   K+    L  E +++ + L       + L  +  E    L 
Sbjct: 271  QEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPLSDEVNEELENLK 330

Query: 829  EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDGINKMGKDLFAL---SREMQAVEENCKN 885
            + K+ +  Q D++K     ++  L+      + IN++   L      ++ +  VE+    
Sbjct: 331  QEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTAREANQRLDLVEQENDF 390

Query: 886  LQKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVE 945
            L+ E  K + N   +     +D+  +   +       +E + + + L  +++ ++ +  +
Sbjct: 391  LKNELKKLHDNTSNDENEKYDDLLNQYELL------FDENETKFDKLQVKQQALNLDYQK 444

Query: 946  YKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKI-- 1003
              S  +  ++++    E  +S  N++ + +   E   KA++E  N  +IQ   LQ+KI  
Sbjct: 445  TISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAE 504

Query: 1004 -DSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEK 1062
             +  ++EK N    +     N++Q  K   +L                    +I+ L+++
Sbjct: 505  LEEWNEEKSNLNTNQ---LVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDE 561

Query: 1063 LETATTANDENVNKISELTKTREELEAELAAYKN-----LKNELETKLETSEKALXXXXX 1117
            L  +  +N    N +++L    E L+      K       KN+L    E  +  L     
Sbjct: 562  LSGSENSN----NLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEE 617

Query: 1118 XXXXXXXXXIQL---EKEATETKQQLNSLRANLESLE------KEHEDLAAQLKKYEEQI 1168
                       L   + E  + KQQ+NSL    + L+       EH D    LK  +EQ+
Sbjct: 618  TNSELEKAKQSLSASDSENNQLKQQINSLENAKKELQFTPVTSDEHLDELETLKIEKEQL 677

Query: 1169 ANKERQYNEEISQLND-------EITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLK 1221
              + +    ++   ND       EI     E++ ++ K   ++     +++  ++ + L 
Sbjct: 678  FLENQALQNQLQYFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLS 737

Query: 1222 KSE 1224
            K E
Sbjct: 738  KKE 740



 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 117/649 (18%), Positives = 249/649 (38%), Gaps = 149/649 (22%)

Query: 1178 EISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSE------------EQSNLKKSEI 1225
            EIS  ++E+       E +++ N+ L    K      E            +++  +KS +
Sbjct: 8    EISDFDNELDEKTLLKELVQRTNNILFSPSKITAIPFERNLLEKTFFGTVDEAEKEKSIV 67

Query: 1226 DALN--LQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKA 1283
               N  + +K L KK + N       + +  +  +K +E + +   +     E++D+   
Sbjct: 68   SFFNWMIDLKVLDKKWDKN-------VLNHYANQLKTREEEQQTVDQTMAFQEVDDQSVL 120

Query: 1284 SEDKNSKYLELQKE---SEKIKEELDAKTTELKIQLEKITNXXXXXXXXXXXXXXXXXXX 1340
            +++  + + EL+     +E  K+E+  + T+ ++  E++ N                   
Sbjct: 121  TKEIKTGFQELKPSVITAEDDKDEIKPEATK-QVSFEELFN------------------- 160

Query: 1341 XXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNE 1400
                + +EE  E  K E+QI +    KE +  ++  S   +  ++ IN +   +   QN+
Sbjct: 161  ----QPSEEINETKKPEVQIFSTDKVKEPEQFDDFYSI--ENLTKAINPVHKTIQYDQND 214

Query: 1401 NELKA-----KEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLL 1455
            ++        KE   T+   E    +N ELL E  +  K + D   +  D+I   ++++ 
Sbjct: 215  DQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQEID 274

Query: 1456 SIER----DNKRDLESLKEQLRAAQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1511
             ++R    +  + L + K Q    QE+                                 
Sbjct: 275  DLKRRLSEEKSKHLHTKKLQDDLLQEN--------------------------------- 301

Query: 1512 XTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEK---SDLISRINESEKDIE 1568
                      +   E ++     +        E+++NL+ EK   SD +  +     +++
Sbjct: 302  ----------RDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQ 351

Query: 1569 ELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKS 1628
            +  + L +     +EL+        A +++ +  +EN  LK++L         K+    +
Sbjct: 352  QQLALLPVLNNQINELQNQLLTAREANQRLDLVEQENDFLKNEL---------KKLHDNT 402

Query: 1629 NQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYND 1688
            + +E E     L + E   D  + K  K + +++A    +Q   S L  +        ND
Sbjct: 403  SNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHE--------ND 454

Query: 1689 LVNKEQAWKRDEDT-VKKTTDSQRQEIEKLAKELDNLKAEN-------SKLKEANEDRSE 1740
            ++  E  W R +D     T +S  ++ + L ++L+ L  +N       ++L+E NE++S 
Sbjct: 455  VLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSN 514

Query: 1741 IDDLMLL-------------------VTDLDEKNAKYRSKLKDLGVEIS 1770
            ++   L+                   +  L+E N     K+ DL  E+S
Sbjct: 515  LNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELS 563


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 67.4 bits (163), Expect = 4e-13
 Identities = 157/977 (16%), Positives = 374/977 (38%), Gaps = 138/977 (14%)

Query: 742  LKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKENFSILETELKN 801
            L+G++T + T        + ++L  +    +++ +  + L       +E   I+ TEL+ 
Sbjct: 161  LQGDVTRIITMNSKERREIIDELAGVAEFDRKIVKTKETLTEVQDR-EERCQIIATELER 219

Query: 802  V-------RDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQ 854
                    R   ++   LR   + ++K+    +++YK+   +++     LE+  E    Q
Sbjct: 220  TLERLAADRQKAEKYQALRQ--QVQEKQGWAKVIQYKAVEQQRQKLWGQLERDRE----Q 273

Query: 855  KKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITE 914
             ++ +           AL +  QA++      Q E +K N     + K+L E+      E
Sbjct: 274  SQQIQQ----------ALDQRSQAIQTQ----QTELEKLNA----QVKALGEE------E 309

Query: 915  IKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDM 974
              A+   L   K Q + L +      +++  ++   Q    + A++++  +   +  ++ 
Sbjct: 310  QLAVAAQLATQKAQRDQLQQRYNDGDRQITNHQ---QQVGQIQAEISQSQQQFLHIQQEK 366

Query: 975  QAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDL 1034
               N   +  +E +   S  QL  L+++  +++   E +  E+  + + + QL+  +   
Sbjct: 367  SFHNTQTLPQLEAAVQTSQQQLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQDEL--- 423

Query: 1035 EQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELAAY 1094
                                Q++ L+E+ +   T   E    +++++   EE +     +
Sbjct: 424  ---------------IPQRSQLAQLEERQQQLLTNLAELTPLLTKVSVELEEKQFAQGQF 468

Query: 1095 KNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEH 1154
                  L ++++T    L               +L KE  E ++QL+ L A  ++ ++  
Sbjct: 469  NFQGEALTSQIQTLASDLAQLEQERSLLQETQTRLLKEQQEKQRQLDKLEAASQAQQEVQ 528

Query: 1155 EDLAAQLKKYEE---------QIANKERQYNEEISQLNDEITSTQQ------ENESIKKK 1199
               A ++    +         Q+   E QY     QL  EI +  +      E++ +   
Sbjct: 529  GTYATKVILQSDLPGVCGLVAQLGQVEPQY-----QLALEIAAGGRLGFLVVEDDGVAAA 583

Query: 1200 NDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK----ELKKKNETNEASLLESIKSVES 1255
              E+  + KA ++T    + ++  +    NL       +L       +    +    +  
Sbjct: 584  GIEILKQAKAGRATFLPLNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFG 643

Query: 1256 ETVKIKELQDECNFKEK-EVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKI 1314
             T+    L +  N   K  +  LE  L  +    S     Q+   +    +   T E+K 
Sbjct: 644  NTIVFDTLVNARNHLGKHRIVTLEGDLLEASGAMSGGSRNQRSGLRFGTMVSEDTAEVKQ 703

Query: 1315 QLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNE 1374
              +++ +                       +   E + + + E Q+  +  E++   L++
Sbjct: 704  LRQRLQDIQQVQGRNEELLLERTVRSRQLTQQLME-MRQQQREAQLHGEQTERDIARLSQ 762

Query: 1375 GSSTITQE---YSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLS-NDELLEEKQ 1430
              + I Q+     +K+  L+  L  LQ       +++ + + +L  +  S   +  +  Q
Sbjct: 763  QQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQ 822

Query: 1431 NTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESXXXXXXXXXXXX 1490
              I++++ E       + + ++ L  ++  ++R    L+E++  AQE             
Sbjct: 823  IQIRTVEAEYQRQLQALRQGEDHLKDLQNSSQR----LEEKIAQAQEK------------ 866

Query: 1491 XXXXXXXXXXXXXXXXXXXXXXTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQ 1550
                                  T+   + +LK ++  +  + +  E       E + + +
Sbjct: 867  -------------IAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGSTK 913

Query: 1551 HEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKS 1610
             E+  L +++N       +L+S+ + +     +L+T +QE            E  T L++
Sbjct: 914  QERDRLETQLN-------QLRSQQQEQQWQWEKLQTNQQEYQ----------ENLTQLQT 956

Query: 1611 KLEDIERELKDKQAEIKSNQEEKEL---LTSRLKELEQELDSTQQKAQKSEEERRAEVRK 1667
            +LE +E++L D   EI   Q+  E      + L+ELE+ + + Q++ +  E      +++
Sbjct: 957  QLEALEQDLPDPWPEIPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQE 1016

Query: 1668 FQVEKSQLDEKAMLLET 1684
            ++  +++L E +  L+T
Sbjct: 1017 YEKTEARLGELSEKLQT 1033



 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 67/342 (19%), Positives = 143/342 (41%), Gaps = 40/342 (11%)

Query: 875  EMQAVEENCK----NLQKEKDKSNVNHQKETK--SLKEDIA-----AKITEIKAINENLE 923
            E+Q  EE C+     L++  ++   + QK  K  +L++ +      AK+ + KA+ +  +
Sbjct: 202  EVQDREERCQIIATELERTLERLAADRQKAEKYQALRQQVQEKQGWAKVIQYKAVEQQRQ 261

Query: 924  EMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIK 983
            ++  Q     ++ + I + L +     Q+    + KL  ++K+L         E E L  
Sbjct: 262  KLWGQLERDREQSQQIQQALDQRSQAIQTQQTELEKLNAQVKAL--------GEEEQLAV 313

Query: 984  AVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTXXXXXX 1043
            A + +  ++  Q   LQ + +   ++  N Q + G I+  I Q ++    ++Q       
Sbjct: 314  AAQLATQKA--QRDQLQQRYNDGDRQITNHQQQVGQIQAEISQSQQQFLHIQQEKSFHNT 371

Query: 1044 XX----XXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKN 1099
                           Q+  L+ + +   +A++  V + ++L++T  +L+ EL   ++   
Sbjct: 372  QTLPQLEAAVQTSQQQLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQDELIPQRSQLA 431

Query: 1100 ELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQ----------QLNSLRANLES 1149
            +LE   E  ++ L              ++LE++     Q          Q+ +L ++L  
Sbjct: 432  QLE---ERQQQLLTNLAELTPLLTKVSVELEEKQFAQGQFNFQGEALTSQIQTLASDLAQ 488

Query: 1150 LEKEHEDLAAQLKKYEEQIANKERQYN--EEISQLNDEITST 1189
            LE+E   L     +  ++   K+RQ +  E  SQ   E+  T
Sbjct: 489  LEQERSLLQETQTRLLKEQQEKQRQLDKLEAASQAQQEVQGT 530



 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 58/313 (18%), Positives = 134/313 (42%), Gaps = 40/313 (12%)

Query: 1128 QLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEIT 1187
            QL ++  E +QQ    + + E  E++     A+L + + QI  ++    +++++L   + 
Sbjct: 731  QLTQQLMEMRQQQREAQLHGEQTERD----IARLSQQQTQINQQQINQQQKLAELQQNLA 786

Query: 1188 STQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLL 1247
              QQ    ++++    + ++ A++++   Q      +   + +QI+       T EA   
Sbjct: 787  LLQQSLPPLEQQLASAQQQLTALETSQTHQ------QWQTIQIQIR-------TVEAEYQ 833

Query: 1248 ESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDA 1307
              ++++      +K+LQ+     E+++++ ++K+   + ++   L L +E E        
Sbjct: 834  RQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQD---LTLAQEQE-------- 882

Query: 1308 KTTELKIQLEKITNXXXXXXXXXXXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEK 1367
               +LKI L ++                        R   E QL +L+++ Q +   +EK
Sbjct: 883  ---QLKIALAEMNGAIQTTEAQLAKLSEKLGSTKQERDRLETQLNQLRSQQQEQQWQWEK 939

Query: 1368 ERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLE 1427
                      T  QEY E +  L+ +L  L+ +      EI     + ++ +L    +LE
Sbjct: 940  --------LQTNQQEYQENLTQLQTQLEALEQDLPDPWPEIP-LLQDRDEANLDFANILE 990

Query: 1428 EKQNTIKSLQDEI 1440
            E + +I++ Q  +
Sbjct: 991  ELERSIRNGQKRL 1003



 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 124/683 (18%), Positives = 259/683 (37%), Gaps = 143/683 (20%)

Query: 732  VEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKY------------- 778
            V +LQ +    + ++  L+   +    NL E    LT    EL+EK              
Sbjct: 416  VNQLQDELIPQRSQLAQLEERQQQLLTNLAELTPLLTKVSVELEEKQFAQGQFNFQGEAL 475

Query: 779  ----QILNSSHSSLKENFSIL-ETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKST 833
                Q L S  + L++  S+L ET+ + +++  ++  QL D LE   +  Q     Y + 
Sbjct: 476  TSQIQTLASDLAQLEQERSLLQETQTRLLKEQQEKQRQL-DKLEAASQAQQEVQGTYATK 534

Query: 834  IHKQED--SIKTLEKGLETILSQKKKA---------------EDGINKMGKDLFALSREM 876
            +  Q D   +  L   L  +  Q + A               +DG+   G ++   ++  
Sbjct: 535  VILQSDLPGVCGLVAQLGQVEPQYQLALEIAAGGRLGFLVVEDDGVAAAGIEILKQAKAG 594

Query: 877  QAVEENCKNLQKEKDKS-NVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKE 935
            +A       ++  K ++ N+++      L  ++         I   +    I  + L   
Sbjct: 595  RATFLPLNKIRPPKGQNPNLSYAHGYIDLAVNLIDGDRRYADIFAFIFGNTIVFDTLVNA 654

Query: 936  KEHISK--------ELVEYKSRFQSHDN----------LVAKLTEKLKSLANNYKDMQ-- 975
            + H+ K        +L+E                    +V++ T ++K L    +D+Q  
Sbjct: 655  RNHLGKHRIVTLEGDLLEASGAMSGGSRNQRSGLRFGTMVSEDTAEVKQLRQRLQDIQQV 714

Query: 976  -AENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDL 1034
               NE L+        E +++   L  ++  M Q++   Q+     E++I +L       
Sbjct: 715  QGRNEELLL-------ERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARLS------ 761

Query: 1035 EQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELAAY 1094
                                         +  T  N + +N+  +L     EL+  LA  
Sbjct: 762  -----------------------------QQQTQINQQQINQQQKLA----ELQQNLALL 788

Query: 1095 KNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETK--QQLNSLRA---NLES 1149
            +     LE +L ++++ L              IQ++    E +  +QL +LR    +L+ 
Sbjct: 789  QQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLKD 848

Query: 1150 LEKEHEDLAAQLKKYEEQIAN----------KERQYNEEISQLNDEITSTQ-------QE 1192
            L+   + L  ++ + +E+IA           ++ Q    ++++N  I +T+       ++
Sbjct: 849  LQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKIALAEMNGAIQTTEAQLAKLSEK 908

Query: 1193 NESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKS 1252
              S K++ D LE ++  ++S  +EQ   +  ++     + +E   + +T   +L + +  
Sbjct: 909  LGSTKQERDRLETQLNQLRSQQQEQ-QWQWEKLQTNQQEYQENLTQLQTQLEALEQDLPD 967

Query: 1253 VESETVKIKELQDECNFK--------EKEVSELEDKLKASEDKNSKYLELQKESEKIKEE 1304
               E + + + +DE N          E+ +   + +L+A E  N   L+  +++E    E
Sbjct: 968  PWPE-IPLLQDRDEANLDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGE 1026

Query: 1305 LDAK-------TTELKIQLEKIT 1320
            L  K        TEL +++E  T
Sbjct: 1027 LSEKLQTIAGERTELLLRIENFT 1049



 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 51/249 (20%), Positives = 114/249 (45%), Gaps = 39/249 (15%)

Query: 1520 ELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLR-IEA 1578
            EL+ ++  +++S   LEQ   SA++ +  L+          +++ +  + ++ ++R +EA
Sbjct: 780  ELQQNLALLQQSLPPLEQQLASAQQQLTALE---------TSQTHQQWQTIQIQIRTVEA 830

Query: 1579 KSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTS 1638
            +   +L+ ++Q     ++ ++     +  L+ K+   + ++   QA+  +  +E+E L  
Sbjct: 831  EYQRQLQALRQ----GEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQEQEQLKI 886

Query: 1639 RLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDL--VNKEQAW 1696
             L E+   + +T+ +  K  E       K    K + D     LET+ N L    +EQ W
Sbjct: 887  ALAEMNGAIQTTEAQLAKLSE-------KLGSTKQERDR----LETQLNQLRSQQQEQQW 935

Query: 1697 KRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLLVTDLDEKNA 1756
            + +    K  T+ Q  +        +NL    ++L+   +D  +    + L+ D DE N 
Sbjct: 936  QWE----KLQTNQQEYQ--------ENLTQLQTQLEALEQDLPDPWPEIPLLQDRDEANL 983

Query: 1757 KYRSKLKDL 1765
             + + L++L
Sbjct: 984  DFANILEEL 992


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 1128 QLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEIT 1187
            ++E E T  +++   ++     L + +      L++  EQ     R   +E++ L+ E  
Sbjct: 101  EIESELTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQ----SRNLRQEVANLSAERA 156

Query: 1188 STQQENESIKKKNDELEGEVKAM-KSTSEEQSNLKKSE--IDALNLQIKELKKKNETNEA 1244
               ++ +S+  ++ EL+ +VK   +  S+ Q  + + E  +     Q++ L+K+  + EA
Sbjct: 157  QLNEQKDSLLAESSELQSQVKLRDQELSKRQERIAQQEKVLARQREQVQSLEKRFASLEA 216

Query: 1245 SLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIK 1302
               +    +     KI +L      K+ ++   E+KL+  E + S    LQ+E E+++
Sbjct: 217  QRQQLQAEINQRDTKIDQLDQAIAAKDNDIQAREEKLQGLETELS---FLQREVEELE 271



 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 47/270 (17%), Positives = 119/270 (44%), Gaps = 33/270 (12%)

Query: 1155 EDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGE----VKAM 1210
            +D+ AQL+  + ++     Q ++   ++  E+T+ ++E + +++++ EL       ++ +
Sbjct: 79   DDILAQLRVAKTEL----EQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLL 134

Query: 1211 KSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFK 1270
            +  SE+  NL++ E+  L+ +  +L   NE  ++ L ES            ELQ +   +
Sbjct: 135  RRVSEQSRNLRQ-EVANLSAERAQL---NEQKDSLLAES-----------SELQSQVKLR 179

Query: 1271 EKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNXXXXXXXXX 1330
            ++E+S+ ++++   E   ++  E  +  EK    L+A+  +L+ ++ +            
Sbjct: 180  DQELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAI 239

Query: 1331 XXXXXXXXXXXXXRKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEY------- 1383
                          +  E +L  L+ E++   + ++  ++L  +  + +  +        
Sbjct: 240  AAKDNDIQAREEKLQGLETELSFLQREVEELERYYQDYQELRGQQIAILRGQLLAFGGLR 299

Query: 1384 ---SEKINTLEDELIRLQNENELKAKEIDN 1410
               SE +    D+L+R  N   L+  +  N
Sbjct: 300  VVSSEAVTGAVDQLLRQANRTALQLVKTPN 329



 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 38/212 (17%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 1520 ELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAK 1579
            ++ + +   +   E+  Q+K+  E ++  ++ E+  +  R  E  ++  +    LR   +
Sbjct: 80   DILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLR---R 136

Query: 1580 SGSELETVKQELNN-AQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQE---EKEL 1635
               +   ++QE+ N + E+ ++N +++++L ++  +++ ++K +  E+   QE   ++E 
Sbjct: 137  VSEQSRNLRQEVANLSAERAQLNEQKDSLL-AESSELQSQVKLRDQELSKRQERIAQQEK 195

Query: 1636 LTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQA 1695
            + +R +E  Q L+      +   ++ +AE+ +   +  QLD+    +  K ND+  +E+ 
Sbjct: 196  VLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQ---AIAAKDNDIQAREEK 252

Query: 1696 WKRDEDTVKKTTDSQRQEIEKLAKELDNLKAE 1727
             +  E T       + +E+E+  ++   L+ +
Sbjct: 253  LQGLE-TELSFLQREVEELERYYQDYQELRGQ 283



 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 46/230 (20%), Positives = 104/230 (45%), Gaps = 45/230 (19%)

Query: 726 KISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSH 785
           +++  E+E+  +   +++ E+T+++ E +   E   E      N  K L    ++   S 
Sbjct: 86  RVAKTELEQASQAKEEIESELTAVREEQQLVQERSRE---LNRNYTKALQLLRRVSEQSR 142

Query: 786 SSLKE--NFSILETELKNVRDSL-DEMTQLRDVLETKDKE---NQTALLEYKSTIHKQED 839
           +  +E  N S    +L   +DSL  E ++L+  ++ +D+E    Q  + + +  + +Q +
Sbjct: 143 NLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRDQELSKRQERIAQQEKVLARQRE 202

Query: 840 SIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQK 899
            +++LEK   ++ +Q+++ +  IN                                  Q+
Sbjct: 203 QVQSLEKRFASLEAQRQQLQAEIN----------------------------------QR 228

Query: 900 ETK--SLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYK 947
           +TK   L + IAAK  +I+A  E L+ ++ + + L +E E + +   +Y+
Sbjct: 229 DTKIDQLDQAIAAKDNDIQAREEKLQGLETELSFLQREVEELERYYQDYQ 278



 Score = 46.2 bits (108), Expect = 9e-07
 Identities = 43/224 (19%), Positives = 102/224 (45%), Gaps = 36/224 (16%)

Query: 1055 QISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALXX 1114
            Q+ + K +LE A+ A +E     SELT  REE +      + L       L+   +    
Sbjct: 84   QLRVAKTELEQASQAKEEIE---SELTAVREEQQLVQERSRELNRNYTKALQLLRR---- 136

Query: 1115 XXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQ 1174
                          + +++   +Q++ +L A    L ++ + L A+  + + Q+  ++  
Sbjct: 137  --------------VSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRD-- 180

Query: 1175 YNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKE 1234
              +E+S+  + I    Q+ + + ++ ++++   K   S   ++  L ++EI+  + +I +
Sbjct: 181  --QELSKRQERIA---QQEKVLARQREQVQSLEKRFASLEAQRQQL-QAEINQRDTKIDQ 234

Query: 1235 LKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELE 1278
            L       + ++      +++   K++ L+ E +F ++EV ELE
Sbjct: 235  L-------DQAIAAKDNDIQAREEKLQGLETELSFLQREVEELE 271


>MJAN-DSM-01-001277 MJ1254  hypothetical protein
          Length = 469

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 31/196 (15%)

Query: 1538 SKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEK 1597
            SK+   E  KN+++E + L +++ E E++I+ L  K++           ++ +L+ A + 
Sbjct: 274  SKRKIIERTKNIKNELTSLKNKLKEKEEEIKNLAIKIK----------DLEDKLSKANKN 323

Query: 1598 IRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQK---- 1653
            +    E  +VL  ++ + E +++    E    +E+ E L   ++ L++E D  + K    
Sbjct: 324  LLNKDEIISVLNERISEYESQIQKLLDENIIYKEKIESLNKYIETLKKENDKLKDKVREL 383

Query: 1654 ---AQKSEEERRAEVRKFQVEKSQLDEKAML-LETKYNDLVNKEQAWKRDEDTVKKTTDS 1709
               A+K  EE+R  +  F  E    DEK ++ L  K+  +  KE         + + T  
Sbjct: 384  SDIAKKYMEEKRGVLWSFLTE----DEKIIIDLIKKHGHITQKE---------IVEITGM 430

Query: 1710 QRQEIEKLAKELDNLK 1725
             + ++ ++  EL++ K
Sbjct: 431  SKPKVSRIISELEDRK 446



 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)

Query: 1633 KELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNK 1692
            K  +  R K ++ EL S + K ++ EEE    ++   ++   L++K   L     +L+NK
Sbjct: 275  KRKIIERTKNIKNELTSLKNKLKEKEEE----IKNLAIKIKDLEDK---LSKANKNLLNK 327

Query: 1693 EQAWK-------RDEDTVKKTTDSQ---RQEIEKLAKELDNLKAENSKLKEANEDRSEI 1741
            ++            E  ++K  D     +++IE L K ++ LK EN KLK+   + S+I
Sbjct: 328  DEIISVLNERISEYESQIQKLLDENIIYKEKIESLNKYIETLKKENDKLKDKVRELSDI 386


>SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,
            reverse complement
          Length = 1336

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 32/247 (12%)

Query: 1515 ESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKL 1574
            +  E EL+   E  R   +K E   K  EE+ +  Q E+   +   ++ + + EE K ++
Sbjct: 336  QQEEAELRRLEEQKRLQLQK-ENEMKRLEEERRIKQEERKRQMELEHQRQLEEEERKRQM 394

Query: 1575 RIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKE 1634
             +EAK   EL+  +Q             EE   LK      EREL     EI+  Q E+E
Sbjct: 395  ELEAKKQMELKRQRQ------------FEEEQRLKK-----EREL----LEIQRKQREQE 433

Query: 1635 LLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQ 1694
                RLK+ EQE  + +++ +KS+  +       Q    ++D    LLE     L  + +
Sbjct: 434  -TAERLKKEEQEALAKKEEEEKSKRNKVDNESYTQEINGKVDN---LLEDLNAVLAEETE 489

Query: 1695 AWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLLVT----- 1749
                 ++       S  +  ++L K L+  K E+    + N+  S  D++  L T     
Sbjct: 490  TTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSISLSDEIAGLNTSNLSG 549

Query: 1750 -DLDEKN 1755
             D DEKN
Sbjct: 550  EDQDEKN 556


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 81/428 (18%), Positives = 175/428 (40%), Gaps = 72/428 (16%)

Query: 914  EIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKD 973
            +++ + ++L+ ++    N   E+  +++        +Q+ + +VA L  +L     +Y D
Sbjct: 76   KLRRLEKDLQSVQASLENALAERNQLTEN-------YQAQEKMVAALQHQLA----HYDD 124

Query: 974  MQAEN-ESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTIS 1032
            +Q+E    L K  +E   E++     L+  ++ +++ +    ++  S+    +QL   +S
Sbjct: 125  IQSEKFVGLQKLNQELLQENTNLSDRLKQAVNEVAETRPKL-VQLNSLVTRNQQLSDQLS 183

Query: 1033 DLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREELEAELA 1092
             +EQ                  Q    ++    +  +  E   ++ +LT  R++++ EL 
Sbjct: 184  YVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWE--EQVRQLTAERDQVQQELQ 241

Query: 1093 AYKNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLNSLRANLESLEK 1152
              +      +T+ E  + AL               +L ++  + + + + L A L  LE+
Sbjct: 242  TARQQSQSAQTQAENLQAALD--------------RLGQQEEQWQGERSQLTAKLNQLEE 287

Query: 1153 EHEDLA---AQLK-KYEEQIANKERQYNEE------ISQLNDEITSTQQE----NESIKK 1198
              ++LA   A+LK K E   A  +R   E+      +     ++T  QQE     E++ K
Sbjct: 288  AQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQENLAK 347

Query: 1199 KNDELEGEV----KAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVE 1254
               E   EV    KA+ +T+  Q     S    + +++K+             ES KSV+
Sbjct: 348  AKGEPPSEVPEKTKAV-ATAPAQEAPVVSPSPPVTVEVKQ-------------ESPKSVQ 393

Query: 1255 SETVK-----------IKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKE 1303
            +E V+            +  +   +  +K  ++  D++   E+K  K +E  +   + K 
Sbjct: 394  AEKVEPEPEPTPVPPAAQATKAPASPAKKSTAKAVDEVLDQEEKQVKAVEKTEPPRENKT 453

Query: 1304 ELDAKTTE 1311
                 T+E
Sbjct: 454  VAPVATSE 461



 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 52/261 (19%), Positives = 112/261 (42%), Gaps = 37/261 (14%)

Query: 1514 IESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSK 1573
            +E +   +++S+E       +L ++ ++ E+ +  LQH                 +L   
Sbjct: 80   LEKDLQSVQASLENALAERNQLTENYQAQEKMVAALQH-----------------QLAHY 122

Query: 1574 LRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEK 1633
              I+++    L+ + QEL           +ENT L  +L+    E+    AE +    + 
Sbjct: 123  DDIQSEKFVGLQKLNQEL----------LQENTNLSDRLKQAVNEV----AETRPKLVQL 168

Query: 1634 ELLTSRLKELEQELDSTQQKAQKSEEERRAEVRKF-----QVEKSQLDEKAMLLETKYND 1688
              L +R ++L  +L   +Q   K+ E+R A   K      + E++Q + +A   E +   
Sbjct: 169  NSLVTRNQQLSDQLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQ 228

Query: 1689 LVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLK-EANEDRSEIDDLMLL 1747
            L  +    +++  T ++ + S + + E L   LD L  +  + + E ++  ++++ L   
Sbjct: 229  LTAERDQVQQELQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEA 288

Query: 1748 VTDLDEKNAKYRSKLKDLGVE 1768
              +L   NA+ + KL+    E
Sbjct: 289  QKELALANAELKVKLETTQAE 309


>MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)
          Length = 1139

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 107/569 (18%), Positives = 219/569 (38%), Gaps = 66/569 (11%)

Query: 750  QTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLK---ENFSILETELKNVRDSL 806
            Q E+ +   +    L   T +   LD+  Q     H  LK   E  +  +     V+ +L
Sbjct: 544  QPESTTDSYSFDSDLPQPTLDQPSLDDHVQYNFDHHEELKPVAEEQNNYQVGFDQVQANL 603

Query: 807  DEMTQLRDVLE---TKDKENQTALL--EYKSTIHKQEDSIKTLEKGLETILSQKKKAEDG 861
            D   +++   E   T D E++ A +   Y+  I   +    T     ET      +  D 
Sbjct: 604  DNNEEIQPTAEKEVTTDFESKQAQVVDSYQLPIDTDQQDQTTFSSSFET--QPTVEQFDQ 661

Query: 862  INKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIKA---- 917
            +N    D F      + V E+  N Q   + SN  +  +   ++ D    IT  K+    
Sbjct: 662  VNSEVNDQFKPEITKEPVLESSFNKQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQI 721

Query: 918  --------INENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSL-- 967
                    ++  +E   ++   L+ + +   +E +   S  +    L   L+ +L+ +  
Sbjct: 722  PTTLPISFVSNRIEYKPVE--TLALDNKESQQEQITINSITEDSKTLAKTLSVQLQQINS 779

Query: 968  ANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQL 1027
             NN   + +E+  L K  ++    +++   + Q KI+   + KE  +      E +I Q 
Sbjct: 780  LNNQSIVTSESVRLDKK-DDQLTINTVNSEDQQPKIEVFVKAKEPVE------EHSITQN 832

Query: 1028 KKTISDLEQTXXXXXXXXXXXXXXXXXQISLLKEKLETATTANDENVNKISELTKTREEL 1087
            K+++ D  +                   IS LK   E   T N + + ++++   + ++ 
Sbjct: 833  KQSVEDKSELDNFNKKSDLYKI------ISELKRG-ELNPTINFDAIFQMNDYQMSVKQS 885

Query: 1088 EAELAAY-KNLKNELETKLETSEKALXXXXXXXXXXXXXXIQLEKEATETKQQLNSLRAN 1146
               L  +  N KN++  +    +K L               +L  +      Q N+ + N
Sbjct: 886  FIHLNDFVTNYKNQISERYLIIKKELQSELS----------RLIDQNENLNVQFNNAK-N 934

Query: 1147 LESLEKEH--EDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELE 1204
            L +L+KE     LA+        IA K     E++ +  + +   Q+     +KK + ++
Sbjct: 935  LTTLQKEEMIRSLASDFA-----IAYKPSNSYEQLQKSGEIMRHVQRAITENEKKIESIQ 989

Query: 1205 GEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQ 1264
            G +K +K+          + I+ L+  ++  KK+ +    S  +S+   ++  V+  +L 
Sbjct: 990  GSLKQLKTVYNSCCETIMNNINKLDNTLRFAKKEKDPLLLSNFDSV--TDNGLVEPNQLM 1047

Query: 1265 DEC-----NFKEKEVSELEDKLKASEDKN 1288
            D+       F      +L+D +  + D+N
Sbjct: 1048 DDLIDFSNTFDNISNEQLDDFIYENMDRN 1076


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.308    0.127    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,584
Number of Sequences: 78
Number of extensions: 9622
Number of successful extensions: 809
Number of sequences better than 1.0e-05: 12
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 122
length of query: 1790
length of database: 48,235
effective HSP length: 76
effective length of query: 1714
effective length of database: 42,307
effective search space: 72514198
effective search space used: 72514198
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 99 (42.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from
280306-281847, reverse complement
         (513 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847...   977   0.0  
SYNE-PCC-01-001777 slr0599                                             52   3e-09
SCER-S28-01-000320 ORFP:YBR059C  AKL1, Chr II from 356820-360146...    50   2e-08

>SCER-S28-01-000850 ORFP:YDL101C  DUN1, Chr IV from 280306-281847,
           reverse complement
          Length = 513

 Score =  977 bits (2526), Expect = 0.0
 Identities = 489/513 (95%), Positives = 489/513 (95%)

Query: 1   MSLSTKREHSGDVTDSSFKRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGR 60
           MSLSTKREHSGDVTDSSFKRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGR
Sbjct: 1   MSLSTKREHSGDVTDSSFKRQQRSNKPSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGR 60

Query: 61  SRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILK 120
           SRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILK
Sbjct: 61  SRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFINGNRLVKKDYILK 120

Query: 121 NGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSYKNDDEVFKKPQIXXXXXXXXX 180
           NGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSYKNDDEVFKKPQI         
Sbjct: 121 NGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSYKNDDEVFKKPQISATSSQNAT 180

Query: 181 XXXXIRKLNKTRPVSFFDKYLLGKELGAGHYALVKEAKNKKTGQQVAVKIFHAXXXXXXX 240
               IRKLNKTRPVSFFDKYLLGKELGAGHYALVKEAKNKKTGQQVAVKIFHA       
Sbjct: 181 TSAAIRKLNKTRPVSFFDKYLLGKELGAGHYALVKEAKNKKTGQQVAVKIFHAQQNDDQK 240

Query: 241 XXXXFREETNILMRVQHPNIVNLLDSFVEPISKSQIQKYLVLEKIDDGELFERIVRKTCL 300
               FREETNILMRVQHPNIVNLLDSFVEPISKSQIQKYLVLEKIDDGELFERIVRKTCL
Sbjct: 241 KNKQFREETNILMRVQHPNIVNLLDSFVEPISKSQIQKYLVLEKIDDGELFERIVRKTCL 300

Query: 301 RQDESKALFKQLLTGLKYLHEQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEIDIQ 360
           RQDESKALFKQLLTGLKYLHEQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEIDIQ
Sbjct: 301 RQDESKALFKQLLTGLKYLHEQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEIDIQ 360

Query: 361 VKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTKKGYTSKVDLWSAGVILYVCLCGFPP 420
           VKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTKKGYTSKVDLWSAGVILYVCLCGFPP
Sbjct: 361 VKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTKKGYTSKVDLWSAGVILYVCLCGFPP 420

Query: 421 FSDQLGPPSLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEALNHPWF 480
           FSDQLGPPSLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEALNHPWF
Sbjct: 421 FSDQLGPPSLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEALNHPWF 480

Query: 481 NDIQQQSSVSLELQRLQITDNKIPKTYSELSCL 513
           NDIQQQSSVSLELQRLQITDNKIPKTYSELSCL
Sbjct: 481 NDIQQQSSVSLELQRLQITDNKIPKTYSELSCL 513


>SYNE-PCC-01-001777 slr0599
          Length = 535

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 41/227 (18%)

Query: 257 HPNIVNLLDSFVEPISKSQIQKYLVLEKIDDGELFERIVRKTCLRQDESKALFKQLLTGL 316
           HP I  L   F E         YLV E I    L +   +K        + L   +L  L
Sbjct: 76  HPQIPQLYAYFSEGEDF-----YLVQEWIPGLTLTQAHAQKGNFSSTAVEELLLGILPVL 130

Query: 317 KYLHEQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEIDIQVKIADFGLAKFT---- 372
           +++H++ IIHRDIKP+NI+L                   E D +  + DFG+ K T    
Sbjct: 131 EFIHQRRIIHRDIKPDNIILR------------------EADGKPILIDFGIIKETMGTL 172

Query: 373 ----GEMQFTNTLCGTPSYVAPEVLTKKGYTSKVDLWSAGVILYVCLCGFPPFSDQLGPP 428
               G   ++  L GTP Y+A E    +   S  DL+S G+     L G  P    L   
Sbjct: 173 VNPDGRSAYSVAL-GTPGYMASEQAAGRPVFSS-DLYSLGLTAIFLLTGKTP--QYLTSD 228

Query: 429 SLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEAL 475
           S   +IL  + A       ++  ++  +I   +  +P ER+N   A+
Sbjct: 229 SRTGEILWRQGA------PQVSPTLAKVIDQAVRYHPRERFNSATAM 269


>SCER-S28-01-000320 ORFP:YBR059C  AKL1, Chr II from 356820-360146,
           reverse complement
          Length = 1108

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 29/243 (11%)

Query: 246 REETNILMRVQH-PNIVNLLDSFVEPISKSQIQKY---LVLEKIDDGELFERIVRK--TC 299
           R E  ++ +++  PNIV   DS      +  +Q +   L++E   +  L + + ++  T 
Sbjct: 92  RNEVEVMKKLKGAPNIVQYFDSNASR-RRDGVQGFEVLLLMELCPNKSLLDYMNQRLSTK 150

Query: 300 LRQDESKALFKQLLTGLKYLH--EQNIIHRDIKPENILLNITRRENPSQVQLGPWDEDEI 357
           L + E   +   +   +  +H    ++IHRDIK EN+L+     +  +  +L  +     
Sbjct: 151 LTEAEIVKIMYDVALSISQMHYLPVSLIHRDIKIENVLV-----DAKNNFKLADFGSTST 205

Query: 358 DIQVKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTK---KGYTSKVDLWSAGVILYVC 414
              +      +A  T  + + +T   TP Y +PE++          K D+W+ GV LY  
Sbjct: 206 CFPIVTTHQDIALLTQNI-YVHT---TPQYRSPEMIDLYRCLPINEKSDIWALGVFLYKL 261

Query: 415 LCGFPPFSDQLGPPSLKEQILQAKYAFYSPYWDKIDDSVLHLISNLLVLNPDERYNIDEA 474
           L    PF +  G    +  IL +KY F     +K    +++LI  +L  NP+ R NI + 
Sbjct: 262 LFFTTPF-EMTG----QFAILHSKYEFPV---NKYSSKLINLIIIMLAENPNLRPNIYQV 313

Query: 475 LNH 477
           L H
Sbjct: 314 LYH 316


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,870
Number of Sequences: 78
Number of extensions: 2050
Number of successful extensions: 13
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 513
length of database: 48,235
effective HSP length: 67
effective length of query: 446
effective length of database: 43,009
effective search space: 19182014
effective search space used: 19182014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-001230 ORFP:YDR213W  UPC2, Chr IV from
889743-892484
         (913 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-001230 ORFP:YDR213W  UPC2, Chr IV from 889743-892484     1067   0.0  

>SCER-S28-01-001230 ORFP:YDR213W  UPC2, Chr IV from 889743-892484
          Length = 913

 Score = 1067 bits (2760), Expect = 0.0
 Identities = 545/560 (97%), Positives = 545/560 (97%)

Query: 354 PNDEEGGVQEENSKKVKEGPLQSQTSETTLNSDAATLQADAXXXXXXXXXXXXXXXTFPT 413
           PNDEEGGVQEENSKKVKEGPLQSQTSETTLNSDAATLQADA               TFPT
Sbjct: 354 PNDEEGGVQEENSKKVKEGPLQSQTSETTLNSDAATLQADALSQLSKMGLSLKSLSTFPT 413

Query: 414 AGIGGVSYDFQELLGIKFPINNGNSRATKASNAEEALANMQEHHERAAASVKENDGQLSD 473
           AGIGGVSYDFQELLGIKFPINNGNSRATKASNAEEALANMQEHHERAAASVKENDGQLSD
Sbjct: 414 AGIGGVSYDFQELLGIKFPINNGNSRATKASNAEEALANMQEHHERAAASVKENDGQLSD 473

Query: 474 TKSPAPSNNAQGGSASIMEPQAADAVSTMAPISMIERNMNRNSNISPSTPSAVLNDRQEM 533
           TKSPAPSNNAQGGSASIMEPQAADAVSTMAPISMIERNMNRNSNISPSTPSAVLNDRQEM
Sbjct: 474 TKSPAPSNNAQGGSASIMEPQAADAVSTMAPISMIERNMNRNSNISPSTPSAVLNDRQEM 533

Query: 534 QDSISSLGNLTKAALENNEPTISLQTSQTENEDDASRQDMTSKINNEADRSSVSAGTSNI 593
           QDSISSLGNLTKAALENNEPTISLQTSQTENEDDASRQDMTSKINNEADRSSVSAGTSNI
Sbjct: 534 QDSISSLGNLTKAALENNEPTISLQTSQTENEDDASRQDMTSKINNEADRSSVSAGTSNI 593

Query: 594 AKLLDLSTKGNLNLIDMKLFHHYCTKVWPTITAAKVSGPEIWRDYIPELAFDYPFLMHAL 653
           AKLLDLSTKGNLNLIDMKLFHHYCTKVWPTITAAKVSGPEIWRDYIPELAFDYPFLMHAL
Sbjct: 594 AKLLDLSTKGNLNLIDMKLFHHYCTKVWPTITAAKVSGPEIWRDYIPELAFDYPFLMHAL 653

Query: 654 LAFSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANA 713
           LAFSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANA
Sbjct: 654 LAFSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANA 713

Query: 714 SGNGTVGNQSLNSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVINPD 773
           SGNGTVGNQSLNSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVINPD
Sbjct: 714 SGNGTVGNQSLNSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVINPD 773

Query: 774 VGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTF 833
           VGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTF
Sbjct: 774 VGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTF 833

Query: 834 LALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQDVDEYSGGGGMHMML 893
           LALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQDVDEYSGGGGMHMML
Sbjct: 834 LALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQDVDEYSGGGGMHMML 893

Query: 894 DFLGGGLPSMTTTNFSDFSL 913
           DFLGGGLPSMTTTNFSDFSL
Sbjct: 894 DFLGGGLPSMTTTNFSDFSL 913



 Score =  478 bits (1231), Expect = e-137
 Identities = 239/288 (82%), Positives = 239/288 (82%)

Query: 1   MSEVGIQNHKKAVTKPRRREKVIELIEVDGKKVSTTSTGKRKFHNKSKNGCDNCKRRRVK 60
           MSEVGIQNHKKAVTKPRRREKVIELIEVDGKKVSTTSTGKRKFHNKSKNGCDNCKRRRVK
Sbjct: 1   MSEVGIQNHKKAVTKPRRREKVIELIEVDGKKVSTTSTGKRKFHNKSKNGCDNCKRRRVK 60

Query: 61  CDEGKPACRKCTNMKLECQYTPIHLRKGRGATVVKYVTRKADGSVESDSSVDLPPTIKKE 120
           CDEGKPACRKCTNMKLECQYTPIHLRKGRGATVVKYVTRKADGSVESDSSVDLPPTIKKE
Sbjct: 61  CDEGKPACRKCTNMKLECQYTPIHLRKGRGATVVKYVTRKADGSVESDSSVDLPPTIKKE 120

Query: 121 QTPFNDIQSAVKASGSSNDSFPXXXXXXXXXXXXXXXXPIEDKNNMTPLSMGLQGTINKK 180
           QTPFNDIQSAVKASGSSNDSFP                PIEDKNNMTPLSMGLQGTINKK
Sbjct: 121 QTPFNDIQSAVKASGSSNDSFPSSASTTKSESEEKSSAPIEDKNNMTPLSMGLQGTINKK 180

Query: 181 DMMNNFFSQNGTIGFGSPERLNSGIDGLLLPPLPSGNMGAFXXXXXXXXXXXXXXXXXXX 240
           DMMNNFFSQNGTIGFGSPERLNSGIDGLLLPPLPSGNMGAF                   
Sbjct: 181 DMMNNFFSQNGTIGFGSPERLNSGIDGLLLPPLPSGNMGAFQLQQQQQVQQQSQPQTQAQ 240

Query: 241 XASGTPNERYGSFDLAGSPALQSTXXXXXXXXXXXXXCNRIPSGQNYT 288
            ASGTPNERYGSFDLAGSPALQST             CNRIPSGQNYT
Sbjct: 241 QASGTPNERYGSFDLAGSPALQSTGMSLSNSLSGMLLCNRIPSGQNYT 288


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.313    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,010
Number of Sequences: 78
Number of extensions: 3122
Number of successful extensions: 19
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 913
length of database: 48,235
effective HSP length: 71
effective length of query: 842
effective length of database: 42,697
effective search space: 35950874
effective search space used: 35950874
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from
1032427-1035054
         (875 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054   1602   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036      122   5e-30
MGEN-G37-01-000335 MG328  conserved hypothetical protein               87   2e-19
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)        86   5e-19
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443     79   4e-17
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...    75   6e-16
SYNE-PCC-01-001071 sll1583                                             53   5e-09
SYNE-PCC-01-000943 sll1424                                             51   2e-08
MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)        48   1e-07
SYNE-PCC-01-000727 sll1120                                             46   4e-07
MJAN-DSM-01-001277 MJ1254  hypothetical protein                        45   7e-07

>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 1602 bits (4148), Expect = 0.0
 Identities = 832/875 (95%), Positives = 832/875 (95%)

Query: 1   MSNFFRDSSMGFKPRPNIFAKLRVRDVDSDSSANTVVENSSNCLDVGSSIEGDDTFKKPH 60
           MSNFFRDSSMGFKPRPNIFAKLRVRDVDSDSSANTVVENSSNCLDVGSSIEGDDTFKKPH
Sbjct: 1   MSNFFRDSSMGFKPRPNIFAKLRVRDVDSDSSANTVVENSSNCLDVGSSIEGDDTFKKPH 60

Query: 61  KTSTEQELITSMSLSQRNHGYSDDMEIGSPKKTTSTDQYNRILKNDVAAIENDTDEDFEI 120
           KTSTEQELITSMSLSQRNHGYSDDMEIGSPKKTTSTDQYNRILKNDVAAIENDTDEDFEI
Sbjct: 61  KTSTEQELITSMSLSQRNHGYSDDMEIGSPKKTTSTDQYNRILKNDVAAIENDTDEDFEI 120

Query: 121 TEVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLHXXXXXXXXXXXDVL 180
           TEVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLH           DVL
Sbjct: 121 TEVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLHTSINNSSTSSNDVL 180

Query: 181 LEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERI 240
           LEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERI
Sbjct: 181 LEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERI 240

Query: 241 ATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKG 300
           ATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKG
Sbjct: 241 ATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKG 300

Query: 301 KEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKF 360
           KEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKF
Sbjct: 301 KEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKF 360

Query: 361 EERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSS 420
           EERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSS
Sbjct: 361 EERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSS 420

Query: 421 KDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYA 480
           KDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYA
Sbjct: 421 KDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYA 480

Query: 481 SLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEA 540
           SLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEA
Sbjct: 481 SLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEA 540

Query: 541 KNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKA 600
           KNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKA
Sbjct: 541 KNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKA 600

Query: 601 LVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQ 660
           LVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQ
Sbjct: 601 LVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQ 660

Query: 661 NRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNL 720
           NRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNL
Sbjct: 661 NRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNL 720

Query: 721 QQKVQSXXXXXXXXXXXXXXXXNHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSAA 780
           QQKVQS                NHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSAA
Sbjct: 721 QQKVQSQKRELEQKIKELEEIKNHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSAA 780

Query: 781 IHSPMKKCPKVDHISKSRINSSKETSKXXXXXXXXXXXXXXXXLTNPSPIQIKPVRGKIK 840
           IHSPMKKCPKVDHISKSRINSSKETSK                LTNPSPIQIKPVRGKIK
Sbjct: 781 IHSPMKKCPKVDHISKSRINSSKETSKFNDEFDLSSSSNDDLELTNPSPIQIKPVRGKIK 840

Query: 841 KGSNCMKPPISSRKKLLLVEDEDQSLKISKKRRRK 875
           KGSNCMKPPISSRKKLLLVEDEDQSLKISKKRRRK
Sbjct: 841 KGSNCMKPPISSRKKLLLVEDEDQSLKISKKRRRK 875


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score =  122 bits (306), Expect = 5e-30
 Identities = 145/660 (21%), Positives = 288/660 (43%), Gaps = 73/660 (11%)

Query: 103  LKNDVAAIENDTDEDFE-ITEVREVSEGVAKETKESHGDPNDSETTLKDS-KMHEYTMTN 160
            LK ++ +++ +T+   E +TE         KE  E +   N S ++LK++  + E  + N
Sbjct: 742  LKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKENFSILETELKN 801

Query: 161  GKAPLHXXXXXXXXXXXDVLLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSD 220
             +  L            DVL       Q      K  + KQ+     L+  L++  S   
Sbjct: 802  VRDSLDEMTQLR-----DVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKK 856

Query: 221  KINEKVGKYKSCL-------ETLQERIATLTSHKN----NQETKLKDLRQNHQLYQRRIS 269
            K  + + K    L       + ++E    L   K+    N + + K L+++       I 
Sbjct: 857  KAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSLKEDIAAKITEIK 916

Query: 270  GFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKR--ELDDCSGQLSEEKIKNSSL 327
                ++E +    N+L K K+    EL      +EY  R    D+   +L+E+    ++ 
Sbjct: 917  AINENLEEMKIQCNNLSKEKEHISKEL------VEYKSRFQSHDNLVAKLTEKLKSLANN 970

Query: 328  IQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKK---------LQKHFDV 378
             ++M    E +IK++E    E K    +Q +  + ++  + ++K         ++K+ + 
Sbjct: 971  YKDMQAENESLIKAVE----ESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQ 1026

Query: 379  AKDTLNVGLRNTTVELSSNTETMLKQQYED----IKENLEQKMSSSKDEMAKTINELSVT 434
             K T++  L  T  E+ S +++  K +YE     +KE LE   +++ DE    I+EL+ T
Sbjct: 1027 LKKTIS-DLEQTKEEIISKSDSS-KDEYESQISLLKEKLE-TATTANDENVNKISELTKT 1083

Query: 435  QKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIV 494
            ++ L     E  L +  N++  L +++  + + L +              L K       
Sbjct: 1084 REEL-----EAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQ 1138

Query: 495  QSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQS 554
            Q N     ++ LE E   L++Q  +    +  KE QY + + +L   N EI+    + +S
Sbjct: 1139 QLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQL---NDEITSTQQENES 1195

Query: 555  LTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQ 614
            + +KN+ L  E+K ++   E+ +NL        +++I + N  +K L  +N+T +  + +
Sbjct: 1196 IKKKNDELEGEVKAMKSTSEEQSNLK-------KSEIDALNLQIKELKKKNETNEASLLE 1248

Query: 615  LVEIKENEQKDHTTKLEAFQKN-NEQLQKLNVEVVQLKAHE------LELEEQNRHLKNC 667
             ++  E+E    T K++  Q   N + ++++    +LKA E      LEL++++  +K  
Sbjct: 1249 SIKSVESE----TVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEE 1304

Query: 668  LEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNL-ESLEEVTKNLQQKVQS 726
            L+ K T ++  L  +  L +     +SE   +     E + N  E LE++   +Q K Q+
Sbjct: 1305 LDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQA 1364



 Score =  111 bits (278), Expect = 8e-27
 Identities = 151/659 (22%), Positives = 281/659 (42%), Gaps = 82/659 (12%)

Query: 191  CSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKV----GKYKSCLETLQERIATLTSH 246
            C+NL +E +   ++  + K R QS+ +   K+ EK+      YK      +  I  +   
Sbjct: 929  CNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEES 988

Query: 247  KN-------NQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKE----ADAE 295
            KN       N + K+  + Q  + +Q      + +IE L KTI+DL + K+E    +D+ 
Sbjct: 989  KNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSS 1048

Query: 296  LMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEM------IKSIENFFSED 349
              +   +I  LK +L+  +    E    N + I E+ K REE+       K+++N     
Sbjct: 1049 KDEYESQISLLKEKLETATTANDE----NVNKISELTKTREELEAELAAYKNLKNELETK 1104

Query: 350  KAHHLLQFNKFEERVHDLFEKKLQ--KHFDVAKDTLNVGLRNTTVELSSNTETMLKQ--Q 405
                     + +E    L E+K+Q  K     K  LN  LR     L    E +  Q  +
Sbjct: 1105 LETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLN-SLRANLESLEKEHEDLAAQLKK 1163

Query: 406  YEDIKENLE----QKMSSSKDEMAKTINEL-SVTQKGLIMGVQEELLTSSGNIQTALV-S 459
            YE+   N E    +++S   DE+  T  E  S+ +K   +  + + + S+   Q+ L  S
Sbjct: 1164 YEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKS 1223

Query: 460  EMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQ 519
            E++    ++ +   +   N ASL   +K+ ++E V+  E ++     E E S L      
Sbjct: 1224 EIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSEL------ 1277

Query: 520  IISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNL 579
                        ED +K  E KN +  ++  + + + E+ +  + ELK    QLEK+ NL
Sbjct: 1278 ------------EDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKI---QLEKITNL 1322

Query: 580  NITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQ 639
            +       + K  S++E+ +   + ++  K   +QL ++K   Q     K +AF+K  + 
Sbjct: 1323 S-------KAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQ----IKNQAFEKERKL 1371

Query: 640  LQKLNVEVVQLKAHELE-LEEQNRHLKNCLEKKETGVEE--------SLSDVKTLKQQVI 690
            L + +  + Q  + ++  LE++   L+N  E K   ++         SLS+ + L+++  
Sbjct: 1372 LNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQN 1431

Query: 691  VLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSXXXXXXXXXXXXXXXXN--HKRNE 748
             +KS + +I + K ++  N E L  + ++ ++ ++S                    K  E
Sbjct: 1432 TIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEE 1491

Query: 749  PSKKGTQNFTKPSDSPKKNATTSNLFPNNSAAIHSPMKKCPKVDHISKSRINSSKETSK 807
             S K      K  +  KK  +T     +N   + S M+   K D   +    S++E  K
Sbjct: 1492 ESSKEKAELEKSKEMMKKLEST---IESNETELKSSMETIRKSDEKLEQSKKSAEEDIK 1547



 Score =  103 bits (257), Expect = 2e-24
 Identities = 162/694 (23%), Positives = 304/694 (43%), Gaps = 141/694 (20%)

Query: 91   KKTTSTDQYNR---ILKNDVAAIENDTDEDF----EITEVREVSEGVAKETK----ESHG 139
            K  +S D+Y     +LK  +       DE+     E+T+ RE  E      K    E   
Sbjct: 1044 KSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET 1103

Query: 140  DPNDSETTLKDSKMHEYTMTNGKAPLHXXXXXXXXXXXDVLLEAFTNTQRICSNLKQELQ 199
                SE  LK+ K +E  +   K  L                   T T++  ++L+  L+
Sbjct: 1104 KLETSEKALKEVKENEEHLKEEKIQLEKEA---------------TETKQQLNSLRANLE 1148

Query: 200  KQQQDNAKLKVRLQSY----ASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQETKLK 255
              ++++  L  +L+ Y    A+   + NE++ +    + + Q+   ++    +  E ++K
Sbjct: 1149 SLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVK 1208

Query: 256  DLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEY----LKRELD 311
             ++   +    + +  K+ I+ LN  I +L K  +  +A L++  K +E     +K   D
Sbjct: 1209 AMKSTSE---EQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQD 1265

Query: 312  DCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKK 371
            +C+ +  E        + E+    E+ +K+     SEDK    L+  K  E        K
Sbjct: 1266 ECNFKEKE--------VSEL----EDKLKA-----SEDKNSKYLELQKESE--------K 1300

Query: 372  LQKHFDVAKDTLNVGLRNTT-----VELSSNTETMLKQQYEDIKENLEQKMSSSKDEMA- 425
            +++  D     L + L   T      E S +  + LK+   + ++N E+++   K+E+  
Sbjct: 1301 IKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQI 1360

Query: 426  ---------KTINELS--VTQK--GLIMGVQEELLTSSGNIQTALVSEMNNTRQEL---- 468
                     K +NE S  +TQ+    I  +++EL+    N       E++NTR EL    
Sbjct: 1361 KNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQ-NENELKAKEIDNTRSELEKVS 1419

Query: 469  ------LDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERST---LSSQKNQ 519
                  L++   T K   SL++ + +YK +I +++E     K L  ER     L S K Q
Sbjct: 1420 LSNDELLEEKQNTIK---SLQDEILSYKDKITRNDE-----KLLSIERDNKRDLESLKEQ 1471

Query: 520  IISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNL 579
            + ++  +K A+ E+ +KKLE +       S KE++          EL+K ++ ++KL + 
Sbjct: 1472 LRAAQESK-AKVEEGLKKLEEE-------SSKEKA----------ELEKSKEMMKKLES- 1512

Query: 580  NITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQ 639
              T +SN E ++ S  E ++    + +  K+  ++ ++  ++E+ D  +++   +K+ E+
Sbjct: 1513 --TIESN-ETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEE 1569

Query: 640  LQ-KLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEES------LSDV-KTLKQQVIV 691
            L+ KL +E         ELE   + L N  EK     EE+      L D+ + LK +   
Sbjct: 1570 LKSKLRIEAKSGS----ELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAE 1625

Query: 692  LKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQ 725
            +KS ++    EK  L   L+ LE+   + QQK Q
Sbjct: 1626 IKSNQE----EKELLTSRLKELEQELDSTQQKAQ 1655



 Score = 89.4 bits (220), Expect = 4e-20
 Identities = 143/733 (19%), Positives = 297/733 (40%), Gaps = 80/733 (10%)

Query: 17   NIFAKLRVRDVDSDSSANTVVENSSNCLDVGSSIEGDDTFKKPHKTSTEQELITSMSLSQ 76
            N+  +L  +   S+ +   V EN  +  +    +E + T  K    S    L    SL +
Sbjct: 1096 NLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANL---ESLEK 1152

Query: 77   RNHGYSDDMEIGSPKKTTSTDQYNRILKNDVAAIENDTDEDFEITEVREVSEG---VAKE 133
             +   +  ++    +      QYN  +      I +   E+  I +  +  EG     K 
Sbjct: 1153 EHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKS 1212

Query: 134  TKESHGDPNDSET---TLKDSKMHEYTMTNGKAPLHXXXXXXXXXXXDVLLEAFTN-TQR 189
            T E   +   SE     L+  ++ +   TN  + L               L+   N  ++
Sbjct: 1213 TSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEK 1272

Query: 190  ICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNN 249
              S L+ +L+  +  N+K  + LQ     S+KI E++    + L+   E+I  L+  K  
Sbjct: 1273 EVSELEDKLKASEDKNSKY-LELQK---ESEKIKEELDAKTTELKIQLEKITNLSKAKEK 1328

Query: 250  QETKLKDLR----QNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADA----------- 294
             E++L  L+    +  +  + ++   K  I+  N+      K   E  +           
Sbjct: 1329 SESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKIN 1388

Query: 295  ----ELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDK 350
                EL++   E E   +E+D+   +L +  + N  L++E    ++  IKS+++      
Sbjct: 1389 TLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEE----KQNTIKSLQD------ 1438

Query: 351  AHHLLQFNKFEERVHDLFEKKLQKHFDVAKD--TLNVGLRNTTVELSSNTETMLKQQYED 408
                 +   +++++    EK L    D  +D  +L   LR      +   E + K + E 
Sbjct: 1439 -----EILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEES 1493

Query: 409  IKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVS---EMNNTR 465
             KE  E + S    EM K +     + +  +    E +  S   ++ +  S   ++ N +
Sbjct: 1494 SKEKAELEKSK---EMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQ 1550

Query: 466  QELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLES--ERSTLSSQKNQIISS 523
             E  D  S+  ++   +E L    + E    +E E   + L +  E+  +++++N ++ S
Sbjct: 1551 HEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKS 1610

Query: 524  LGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITT 583
                  + ED+ ++L+ K  EI     +++ LT + + L  EL   Q + +K        
Sbjct: 1611 ------KLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEEERRAE 1664

Query: 584  KSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKL 643
               ++ + S  +E  KA++     L+ +   LV  ++  ++D  T  +      ++++KL
Sbjct: 1665 VRKFQVEKSQLDE--KAML-----LETKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKL 1717

Query: 644  NVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAE- 702
              E+  LKA   +L+E N        +  + +++ +  V  L ++    +S+ +D+  E 
Sbjct: 1718 AKELDNLKAENSKLKEAN--------EDRSEIDDLMLLVTDLDEKNAKYRSKLKDLGVEI 1769

Query: 703  KLELQDNLESLEE 715
              + +D+ E  EE
Sbjct: 1770 SSDEEDDEEDDEE 1782



 Score = 84.7 bits (208), Expect = 1e-18
 Identities = 111/539 (20%), Positives = 226/539 (41%), Gaps = 53/539 (9%)

Query: 239  RIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMK 298
            RI T  SH  ++E   K   +  +  QR+ +  K  I +L        +N  E    L  
Sbjct: 710  RIRTALSHDPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTN 769

Query: 299  KGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHH--LLQ 356
            + KE++   + L+     L E      + ++ +  + +EM +  +   ++DK +   LL+
Sbjct: 770  EHKELDEKYQILNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLE 829

Query: 357  FNKFEERVHDLFEKKLQKHFDV-------AKDTLN---VGLRNTTVELSSNTETMLKQQY 406
            +     +  D   K L+K  +        A+D +N     L   + E+ +  E     Q 
Sbjct: 830  YKSTIHKQEDSI-KTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQK 888

Query: 407  EDIKENL--EQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNT 464
            E  K N+  +++  S K+++A  I E+    + L     EE+     N    L  E  + 
Sbjct: 889  EKDKSNVNHQKETKSLKEDIAAKITEIKAINENL-----EEMKIQCNN----LSKEKEHI 939

Query: 465  RQELLDDASQTAKNYASLENLVKAYKAEIVQ-SNEYEERIKHLESERSTLSSQKNQIISS 523
             +EL++  S+    + S +NLV     ++   +N Y++     ES    +   KN+    
Sbjct: 940  SKELVEYKSR----FQSHDNLVAKLTEKLKSLANNYKDMQAENESLIKAVEESKNE---- 991

Query: 524  LGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITT 583
                  Q  +L  K+++ + E      +  S+ +  E L   +  ++   E++ + + ++
Sbjct: 992  ---SSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSS 1048

Query: 584  KSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKE----------NEQKDHTTKLE-- 631
            K  YE++IS   E ++   + ND    +I +L + +E          N + +  TKLE  
Sbjct: 1049 KDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETS 1108

Query: 632  --AFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQV 689
              A ++  E  + L  E +QL+    E ++Q   L+  LE  E   E+  + +K  ++Q+
Sbjct: 1109 EKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQI 1168

Query: 690  IVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSXXXXXXXXXXXXXXXXNHKRNE 748
                ++++    E  +L D + S ++  +++++K                   N K++E
Sbjct: 1169 ---ANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSE 1224


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 112/504 (22%), Positives = 217/504 (43%), Gaps = 84/504 (16%)

Query: 247 KNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKK------- 299
           K N   ++ DL Q     +RR+S  K+   +  K  +DL +  ++   +L  K       
Sbjct: 259 KENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPL 318

Query: 300 ----GKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLL 355
                +E+E LK+E    S QL   K K+S++ Q++      ++  + N  +E   + LL
Sbjct: 319 SDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLA-----LLPVLNNQINE-LQNQLL 372

Query: 356 QFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQ 415
              +  +R+ DL E++            N  L+N   +L  NT     ++Y+D+    E 
Sbjct: 373 TAREANQRL-DLVEQE------------NDFLKNELKKLHDNTSNDENEKYDDLLNQYEL 419

Query: 416 KMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQT 475
                 DE     ++L V Q+ L +  Q+             +S + +    LLD+   T
Sbjct: 420 LF----DENETKFDKLQVKQQALNLDYQK------------TISALKHENDVLLDEIEWT 463

Query: 476 AKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLV 535
                   N            N +EE+ K L+ + + L+ Q  Q+   +   E   E   
Sbjct: 464 RSKDNDFNN----------TKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNE--- 510

Query: 536 KKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTK---SNYENKIS 592
              E  N+  +Q+   +Q L + ++NL N     QD+L  L  +N+      ++ E+++S
Sbjct: 511 ---EKSNLNTNQLVNLQQQLKD-SQNLFN---VAQDKLATLEEVNLALNEKINDLEDELS 563

Query: 593 ---SQNEIVKALVSENDTLKQRIQQL----VEIKENEQKD----HTTKLEAFQKNNEQLQ 641
              + N ++  L ++++ L++   +L     ++K+N+  D    +   L AF++ N +L+
Sbjct: 564 GSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELE 623

Query: 642 KLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITA 701
           K    +    +   +L++Q   L+N   KKE       SD      ++  LK EK+ +  
Sbjct: 624 KAKQSLSASDSENNQLKQQINSLENA--KKELQFTPVTSDEHL--DELETLKIEKEQLFL 679

Query: 702 EKLELQDNLESLEEVTKNLQQKVQ 725
           E   LQ+ L+   +++ N  ++++
Sbjct: 680 ENQALQNQLQYFNDISANQTEEIK 703


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score = 85.9 bits (211), Expect = 5e-19
 Identities = 123/596 (20%), Positives = 260/596 (43%), Gaps = 88/596 (14%)

Query: 186 NTQRICS-NLKQ----ELQKQQQDNAKLKVRLQSYASNSD-KINEKVGKYKSCLETLQER 239
           NTQ+    NL+Q    ++ K QQ+N      L+   +  + K ++ + K ++  + LQ +
Sbjct: 332 NTQKEAFFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHK 391

Query: 240 IATLTSHKNNQETKLKDL-RQNHQLYQRR--ISGFKTSIENLNKTINDLGKNKKEADAEL 296
           I      KN   TK ++L  Q  +L+++R  I    T      +   +  +  K+   E+
Sbjct: 392 I---NEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQRESSQLLKDKQNEV 448

Query: 297 MKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQ 356
            +  + +EY K+ELD     L ++K  +S  I ++ +   +  K +E  +       L++
Sbjct: 449 KQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELY-------LVK 501

Query: 357 FNKFEERVHDL--FEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLE 414
             K +++ ++L  FEK+L++H    ++ L    +       +   + +K       E+ E
Sbjct: 502 KQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKL------EDKE 555

Query: 415 QKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQE---LLDD 471
           + +++   ++A   ++L   +            + S + +  L +E  N +QE   L  +
Sbjct: 556 KDLNTKAQQIANEFSQLKTDK------------SKSADFELMLQNEYENLQQEKQKLFQE 603

Query: 472 ASQTAKNYASLENLVKAYKAEIVQSNEYEERI-KHLESERSTLSSQKNQIISSLGTKEAQ 530
            +   +N A L N ++  + E++Q  E  +++ K  E ER     +  ++++S+   E Q
Sbjct: 604 RTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELVASV---EKQ 660

Query: 531 YEDLVKKLE---------AKNIEISQ--ISGKEQSLTEKNENLSNELKK---VQDQLEKL 576
            E L KKL+         +KN+   +  I  KE+ +    + L N++     +Q  L +L
Sbjct: 661 KEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQL 720

Query: 577 N---NLNITTKSNYENKISS-QNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEA 632
           N   N   +   N + +I+   N+ +K L     +L++R+Q+L  ++ N QK H+ + +A
Sbjct: 721 NQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEAN-QKQHSYQNQA 779

Query: 633 F------QKNNEQLQKLNVEVVQ-----------------LKAHELELEEQNRHLKNCLE 669
           +      + N E+   LN+   Q                 L   + EL+ +   L N   
Sbjct: 780 YFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFL 839

Query: 670 KKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQ 725
             +   +     + T+K+   ++  E+  +  ++ E  +N+   +    N   ++Q
Sbjct: 840 NHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQ 895



 Score = 75.5 bits (184), Expect = 6e-16
 Identities = 137/717 (19%), Positives = 289/717 (40%), Gaps = 83/717 (11%)

Query: 64   TEQELITSMSLSQRNHGYS-DDMEIGSPKKTTSTDQYN-RILKNDVAAIENDTDEDFEIT 121
            ++  L  S +L++R       + EI + +K    D  N  +++ D+A +    ++  E +
Sbjct: 672  SQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQ--ERS 729

Query: 122  EVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLHXXXXXXXXXXXDVL- 180
            E++   + +A    +S    N+ E +L+       T+   +               D L 
Sbjct: 730  ELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLN 789

Query: 181  --LEAFTNTQRI----CSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLE 234
               +AF N ++        +KQ L  + Q    L ++       + ++N     + +  +
Sbjct: 790  REKQAFLNLRKKQTMEVDAIKQRLSDKHQ---ALNMQQAELDRKTHELNNAFLNHDADQK 846

Query: 235  TLQERIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADA 294
            +LQ+++AT+   +   + +   L +  + +   ++GFK    N    +  + +  K+ ++
Sbjct: 847  SLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQES 906

Query: 295  ELMKKGKE-------------------------IEYLKRELDDCSGQLSEEKIKNSSLIQ 329
            E  +K  E                         IE  +RELD  + + ++ K++  +  Q
Sbjct: 907  EQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQ 966

Query: 330  EMGKNREEMIKSIENFFSEDKAHHLLQ--FNKFEE---RVHDLFEKKLQK-HFDVAKDTL 383
             +   +++ +++      E    +L Q  FN+  E   +  +   KK+Q  H+++ K   
Sbjct: 967  ALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELKKRNQ 1026

Query: 384  NVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGL----- 438
             + L+   +      +    Q+     +  E++ +   +   + + EL   ++ L     
Sbjct: 1027 FLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNV 1086

Query: 439  -IMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQ---TAKNYASLENLVKAYKAEIV 494
             +   +E+L T   N+     +   N R +L     Q     KN+    N   A KA + 
Sbjct: 1087 ELERKREKLATDFTNLNKVQHNTQIN-RDQLNSQIRQFLLERKNFQRFSNEANAKKAFL- 1144

Query: 495  QSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQ- 553
                    IK L S  S L  QK  +       + + E   K+L+   +++ Q   ++Q 
Sbjct: 1145 --------IKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQN 1196

Query: 554  ----------SLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVS 603
                      ++  + E LS+E K +  +L +L NL+ T  +N      SQ ++ +   +
Sbjct: 1197 FDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTN 1256

Query: 604  ENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKN----NEQLQKLNVEVVQLKAHELELEE 659
              D LK+ +++  +  + + +    +L  F  +     +QL K    +V  K   L+  E
Sbjct: 1257 LLD-LKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQ-RIVDDKNRLLKENE 1314

Query: 660  QNRH-LKNCLEKKETGVEESLSDV-KTLKQQVIVLKSEKQDITAEKLELQDNLESLE 714
            +N H L N  E+K   +E+ +S   K  KQ    + +  +++  ++ ELQ  L  LE
Sbjct: 1315 RNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELE 1371



 Score = 70.9 bits (172), Expect = 2e-14
 Identities = 129/597 (21%), Positives = 248/597 (41%), Gaps = 89/597 (14%)

Query: 180 LLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQER 239
           LL+   + +    NLK  L+ Q +DN +L  ++     + +++  +   ++     + ++
Sbjct: 43  LLKEIKSLEDELKNLKG-LKNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDK 101

Query: 240 IA---TLTSHKNNQETKLK------------DLRQNHQLYQRRISGFKTSIENLNKTIND 284
           ++    LT    N+ T+L+            +L      Y  +++ F   IEN N+TIN 
Sbjct: 102 VSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINR 161

Query: 285 L------GKNKKEADAELMKKG-----------KEIEYLKRELDDCSGQLSEEKIKNSSL 327
           L       +N  + +  L++               I+ L  ELD    Q     I+  + 
Sbjct: 162 LNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENT 221

Query: 328 IQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGL 387
            +E+     E+    EN   +++     Q+  + + +  L E+K+Q              
Sbjct: 222 YRELVSADNELQNVYEN-IDQNQIQFKHQYQTYRDELSQL-ERKIQ-------------- 265

Query: 388 RNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELL 447
              T +   + E+ L+ + +D    +  ++ +  D++AK ++      K     V+++L+
Sbjct: 266 --LTKQELVDKESALRVKIDDADFYINARL-AELDDVAKQLSFQDGITKQNAQHVEDKLV 322

Query: 448 TSSGNIQTALVSEMNNTRQELLDDASQTAK---NYASLENLVKAYKAEIVQSNEYEER-- 502
             +         +  NT++E   +  Q+A    N    EN + A   E  Q NE+E++  
Sbjct: 323 ALNKE------KDRLNTQKEAFFNLRQSALIDINKLQQENELFAKHLE-HQQNEFEQKQS 375

Query: 503 --IKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNE 560
             +  LE+E   L  + N+  +   TK  +  +  ++L  K  EI  +  +     E   
Sbjct: 376 DSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYEHQR 435

Query: 561 NLSNELKKVQDQLEK-LNNLNITTK--SNYENKISSQNEIVKALVSENDTLKQRIQQLVE 617
             S  LK  Q+++++   NL    K      N +  Q ++    + +   LK+++ Q  E
Sbjct: 436 ESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQ---LKEKVAQ--E 490

Query: 618 IKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAH----ELELEEQNRHL---KNCLEK 670
            KE E+     K +  QK NE L        QLK H    E ELE + + L   K+ LE+
Sbjct: 491 RKELEELYLVKKQKQDQKENELL----FFEKQLKQHQADFENELEAKQQELFEAKHALER 546

Query: 671 KETGVEESLSDVKTLKQQVI----VLKSEKQDITAEKLELQDNLESLEEVTKNLQQK 723
               +E+   D+ T  QQ+      LK++K      +L LQ+  E+L++  + L Q+
Sbjct: 547 SFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQE 603



 Score = 65.1 bits (157), Expect = 9e-13
 Identities = 136/675 (20%), Positives = 265/675 (39%), Gaps = 124/675 (18%)

Query: 134  TKESHGDPNDSETTLK---DSKMHEYTMTNGKAPLHXXXXXXXXXXXDVLLEAFTNTQRI 190
            TK+   +    ET LK        +Y +   +               D L E     +  
Sbjct: 901  TKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLE 960

Query: 191  CSNLKQELQKQQQDNAKLKVRLQ------------------SYASNSDKINEKVGKYKSC 232
              N  Q LQ Q+QD  + ++ L+                  S     +++ +K+  +   
Sbjct: 961  LDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYE 1020

Query: 233  LETLQERIAT----LTSHKNNQETKLKDLRQNHQLYQRRISGF----KTSIENLNKTIND 284
            L+   + +A     L + + +Q+ K +++    + +++  + F    K  +E L K    
Sbjct: 1021 LKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRS 1080

Query: 285  LGKNKKEADAELMKKGKEIEYLKR-------ELDDCSGQLSE---EKIKNSSLIQEMGKN 334
            L ++  E + +  K   +   L +         D  + Q+ +   E+        E    
Sbjct: 1081 LSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAK 1140

Query: 335  REEMIKSIENFFSEDK------AHHLLQFNKFEERVH-DLFEKKLQ--------KHFDVA 379
            +  +IK + +F S  K      A   L+F+K +E+   +L +  LQ        ++FD+ 
Sbjct: 1141 KAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIE 1200

Query: 380  KDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLI 439
            K    V ++ T  E  S+ +  L Q+  ++K NL Q   ++K++   +  +L      L+
Sbjct: 1201 KQRQLVAIK-TQCEKLSDEKKALNQKLVELK-NLSQTYLANKNKAEYSQQQLQQKYTNLL 1258

Query: 440  ------MGVQEELLTSSGNIQTALVSEMNNTR---------QELLDDASQTAK-NYASLE 483
                     +++L     +I   L    N+ R         Q ++DD ++  K N  +L 
Sbjct: 1259 DLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLH 1318

Query: 484  NLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSL-------GTKEAQYEDLVK 536
             L          SNE E +   LE + S    Q+ Q   ++         KE + + L+ 
Sbjct: 1319 FL----------SNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLV 1368

Query: 537  KLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNE 596
            +LE +  +++    K     E+ EN   +L ++Q  L+   N N              N 
Sbjct: 1369 ELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSN--------------NF 1414

Query: 597  IVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQ------KLNVEVVQL 650
              KA+    ++ K+ +++L   K+   K+ +   E F+K  ++++      KL ++  Q 
Sbjct: 1415 KTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQR 1474

Query: 651  KAHELELEEQNRHL-KNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDN 709
            KA+ LE +    ++ KN ++ KE        ++K  K +V       QDI +   + ++ 
Sbjct: 1475 KANLLEAQANKLNIEKNTIDFKE-------KELKAFKDKV------DQDIDSTNKQRKEL 1521

Query: 710  LESLEEVTKNLQQKV 724
             E L E  K LQQ +
Sbjct: 1522 NELLNE-NKLLQQSL 1535



 Score = 63.2 bits (152), Expect = 3e-12
 Identities = 106/535 (19%), Positives = 219/535 (40%), Gaps = 87/535 (16%)

Query: 243 LTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKGKE 302
           L S  N  +   +++ QN   ++ +   ++  +  L + I    +   + ++ L  K  +
Sbjct: 225 LVSADNELQNVYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDD 284

Query: 303 IEYLKR----ELDDCSGQLSEEK---IKNSSLIQE----MGKNREEMIKSIENFFSEDKA 351
            ++       ELDD + QLS +     +N+  +++    + K ++ +    E FF+  ++
Sbjct: 285 ADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQS 344

Query: 352 HHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKE 411
             L+  NK ++  ++LF K L+              +N   +  S++   L+ +Y+    
Sbjct: 345 A-LIDINKLQQE-NELFAKHLEHQ------------QNEFEQKQSDSLLKLETEYKA--- 387

Query: 412 NLEQKMSSSKDEMAKTINELSVTQKGLIMGVQE--ELLTSSGNIQTALVSEMNNTRQELL 469
            L+ K++  K+E A    EL   ++ L    +E   LLT     Q +L  E      +LL
Sbjct: 388 -LQHKINEFKNESATKSEELLNQERELFEKRREIDTLLT-----QASLEYEHQRESSQLL 441

Query: 470 DDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESE-------------------- 509
            D     K +   +NL  A K E+ +     ++ K ++SE                    
Sbjct: 442 KDKQNEVKQH--FQNLEYA-KKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELY 498

Query: 510 ---RSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQ-----------ISGKEQSL 555
              +     ++N+++      +    D   +LEAK  E+ +           +  KE+ L
Sbjct: 499 LVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALERSFIKLEDKEKDL 558

Query: 556 TEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKA---LVSENDTLKQRI 612
             K + ++NE  +++    K  +  +  ++ YEN    + ++ +           L  R+
Sbjct: 559 NTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRL 618

Query: 613 QQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKK- 671
           QQ    K  E       L+   K+ EQ + +N      +    EL       K  L KK 
Sbjct: 619 QQ----KREELLQQKETLDQLTKSFEQERLIN------QREHKELVASVEKQKEILGKKL 668

Query: 672 ETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQS 726
           +   + SL+  K L ++ + +K ++++I A + +L +++ + E +  +L Q  QS
Sbjct: 669 QDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQS 723



 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 99/487 (20%), Positives = 193/487 (39%), Gaps = 65/487 (13%)

Query: 188  QRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHK 247
            Q++  + + E QK++   A L++    +   +  I ++  +    ++T  E+++      
Sbjct: 1165 QKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQ--RQLVAIKTQCEKLSDEKKAL 1222

Query: 248  NNQETKLKDLRQNH-----------QLYQRRISGFKTSIENLNKTINDLGKNKKEADAEL 296
            N +  +LK+L Q +           Q  Q++ +      ENL +T + L K  +   A L
Sbjct: 1223 NQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARL 1282

Query: 297  MKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQ 356
             K   ++ + K++L      L  ++I +      + K  E  +  + N     +A    Q
Sbjct: 1283 TKFANDLRFEKKQL------LKAQRIVDDK--NRLLKENERNLHFLSNETERKRAVLEDQ 1334

Query: 357  FNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQK 416
             + FE++     +  L  H +V K      L+   VEL +  +T L   +         K
Sbjct: 1335 ISYFEKQRKQATDAILASHKEVKKKEGE--LQKLLVELETR-KTKLNNDFA--------K 1383

Query: 417  MSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTA 476
             S  ++E      +L   QK L      +  T+S N +T  + E+ N+ +  +++ +   
Sbjct: 1384 FSRQREEFENQRLKLLELQKTL------QTQTNSNNFKTKAIQEIENSYKRGMEELNFQK 1437

Query: 477  KNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVK 536
            K +   +N  + Y           E  + +  E     SQ   ++     K    E    
Sbjct: 1438 KEFD--KNKSRLY-----------EYFRKMRDEIERKESQVKLVLKETQRKANLLEAQAN 1484

Query: 537  KLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQN- 595
            KL   NIE + I  KE+ L    + +  ++     Q ++LN L        ENK+  Q+ 
Sbjct: 1485 KL---NIEKNTIDFKEKELKAFKDKVDQDIDSTNKQRKELNEL------LNENKLLQQSL 1535

Query: 596  -EIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHE 654
             E  +A+ S++  L ++I+    IK          L    +     QK   E+ +L+   
Sbjct: 1536 IERERAINSKDSLLNKKIE---TIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQT 1592

Query: 655  LELEEQN 661
             + E+Q+
Sbjct: 1593 FDSEKQD 1599



 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 90/519 (17%), Positives = 212/519 (40%), Gaps = 75/519 (14%)

Query: 180  LLEAFTNTQRICSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQER 239
            L + +TN   +  NL++   +  + +  +  RL  +A++     +++ K +  ++   ++
Sbjct: 1250 LQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVD---DK 1306

Query: 240  IATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKK 299
               L  ++ N      +  +   + + +IS F+   +     I    K  K+ + EL K 
Sbjct: 1307 NRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKL 1366

Query: 300  GKEIEYLKRELDDCSGQLSE--EKIKNSSL-IQEMGKN----------REEMIKSIENFF 346
              E+E  K +L++   + S   E+ +N  L + E+ K           + + I+ IEN +
Sbjct: 1367 LVELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSY 1426

Query: 347  S---EDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTT------------ 391
                E+      +F+K + R+++ F +K++   +  +  + + L+ T             
Sbjct: 1427 KRGMEELNFQKKEFDKNKSRLYEYF-RKMRDEIERKESQVKLVLKETQRKANLLEAQANK 1485

Query: 392  VELSSNTETMLKQQYEDIKENLEQKMSSS---KDEMAKTINELSVTQKGLIMGVQEELLT 448
            + +  NT    +++ +  K+ ++Q + S+   + E+ + +NE  + Q+ LI   +E  + 
Sbjct: 1486 LNIEKNTIDFKEKELKAFKDKVDQDIDSTNKQRKELNELLNENKLLQQSLIE--RERAIN 1543

Query: 449  SSGNIQTALV-----------------------------SEMNNTRQELLDDASQTAKNY 479
            S  ++    +                             +E+N  R +  D   Q  KN+
Sbjct: 1544 SKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNF 1603

Query: 480  ASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISS-LGTKEAQYEDLVKKL 538
                 L K    ++     Y       + + +TL  Q  Q+    L   + +YE+ + +L
Sbjct: 1604 --FPPLFKINGNDMAFPYLYPWLYPQQKQDDNTL--QIRQLFEQQLQFMQQRYENELNEL 1659

Query: 539  EAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIV 598
              +   + +   + Q  ++ N N  +E  KV+  +EKL     +  ++++ KI   N + 
Sbjct: 1660 RRQRNLLEKKLDQIQLESQLN-NKQSEFSKVESMMEKLLEKTESRLNDFDQKI---NYLT 1715

Query: 599  KALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNN 637
            K +   N       Q     ++++++    +++  +K N
Sbjct: 1716 KKVNQHNTYQPSSYQPTPSYQDSDKQQLLFRIQELEKQN 1754


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 79.3 bits (194), Expect = 4e-17
 Identities = 157/708 (22%), Positives = 294/708 (41%), Gaps = 82/708 (11%)

Query: 53   DDTFKKPHKTSTEQELITSMSLSQRNHGYSDDMEIGSPKKTTSTDQYNRILKNDVAAIEN 112
            +D+  K  +    QE+  +  L++R  G S +  I S +++TS    + + K D+  I+ 
Sbjct: 1177 NDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSD-DPLDKEDI--IKK 1233

Query: 113  DTDEDFEITEVREVSEGVAKETKESHGDPNDSETTLKDSKMHEYTMTNGKAPLHXXXXXX 172
              D     TE+    E   +E K        +ET L  S   +  +   KA +       
Sbjct: 1234 YYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKI---KAQMKKLKKLI 1290

Query: 173  XXXXXDVLLEAFTNTQRI-CSNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKS 231
                  + L++  N     C + + ++ K   +   LK +L             +    S
Sbjct: 1291 QDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAI----S 1346

Query: 232  CLETLQERIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENL------NKTINDL 285
             L +   +I   +S  ++   KLK      +  + R+   +  ++ +      N  + D+
Sbjct: 1347 ALHSKFRKIQGESSLSSSDIYKLK-----FEASEERVKSLEDKLKTMPLRDRTNLPVGDI 1401

Query: 286  GKNKKEADAELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENF 345
             KN+      + K  +EI Y K E       L+E   K S L  ++ ++     KS E  
Sbjct: 1402 IKNRDS----ISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQS-----KSKEAL 1452

Query: 346  FSE--DKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLK 403
             SE  D+    L+  + ++ +     K+ ++ F+   D L    +   + L  +    LK
Sbjct: 1453 LSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDL----QGNELRLREHIHA-LK 1507

Query: 404  QQYEDIKE--NLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSG--NIQTALVS 459
            Q  ED+K   ++ +K+ +   +  K I E  + +    M +QE LL      +++  L  
Sbjct: 1508 QAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSD 1567

Query: 460  EMNNTRQEL--LDDASQTAKNYASL-ENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQ 516
            ++ + ++ L  ++D SQ       L E L  + KAE     E+      LE+  +   ++
Sbjct: 1568 DLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAK 1627

Query: 517  KNQIISSLG--TKEAQY------------EDLVKKLEAKNIEISQISGKEQSLTEKNENL 562
             + ++  L   TK  +             ++L +K EA N E   + GK  SLT+  + L
Sbjct: 1628 ISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQEL 1687

Query: 563  SNELKKVQDQLEKLN-NLNITTKSNYE--NKISSQNEIVKALV---SENDTLKQRIQQLV 616
             ++L +  D L+  N  L+ +T+ N E   KI    E ++  +   S N  L + +Q   
Sbjct: 1688 ESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASC 1747

Query: 617  EIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVE 676
               +++  D   K     + N+ LQKLN ++      +L+L+  +  L +  EK      
Sbjct: 1748 NGYKDKFDDEKQKNIDLYEENQTLQKLNTDL------QLQLKNLHERLSDTTEKNAW--- 1798

Query: 677  ESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLE-SLEEV-TKNLQQ 722
              LS +  L+  V    S + D+  E+++   +LE ++EE+ TKN QQ
Sbjct: 1799 --LSKIHELENMV----SLETDLKYEEMKKNKSLERAVEELQTKNSQQ 1840



 Score = 73.6 bits (179), Expect = 2e-15
 Identities = 113/519 (21%), Positives = 208/519 (40%), Gaps = 93/519 (17%)

Query: 192  SNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQE 251
            SN     +K  +   KLK  LQ   S    + EK  K  + LE  Q+ +        NQE
Sbjct: 857  SNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLL--------NQE 908

Query: 252  TKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKRELD 311
             +  +LR+N  L  R     KTS E L K  +DL   K E   E ++  + +E   +++ 
Sbjct: 909  KE--NLRKNESLLNR----VKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQ 962

Query: 312  DCSGQLSEEKIKNSSLIQEMGKNREEMIKSIE----NFFSEDKAHHLLQFNKFEERVHDL 367
                 L E   +  + ++++     E+IK I     +   E  +  L++ +K        
Sbjct: 963  G----LQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKL------- 1011

Query: 368  FEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKT 427
               KL+      KD +N                    + E+IK +   K+SSS+++    
Sbjct: 1012 ---KLENEIKRLKDVIN-------------------SKEEEIK-SFNDKLSSSEED---- 1044

Query: 428  INELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVK 487
                        + ++   L  + NI  + +  +     +L        K  A+L N +K
Sbjct: 1045 ------------LDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLK 1092

Query: 488  AYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQ 547
              ++E++   + +E+I + + E +T S Q++  +S  G        +  +L+   I++++
Sbjct: 1093 NKESELL---KMKEKIDNHKKELATFSKQRDDAVSEHG-------KITAELKETRIQLTE 1142

Query: 548  ISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDT 607
                 Q + E+  N   E K+ Q+Q ++    N   +S  ++KI      +   +S N  
Sbjct: 1143 YKSNYQKIKEEYSNFQRETKE-QEQKKR----NSLVESLNDSKIKELEARLSQEISLNQY 1197

Query: 608  LKQRIQ-QLVEI------KENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQ 660
            L +RI    VE       +     D     E   K    LQ    E+ +   +E+   E+
Sbjct: 1198 LNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEI---EE 1254

Query: 661  NRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDI 699
             ++L + L   ET +  S  + + +K Q+  LK   QD+
Sbjct: 1255 KKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDM 1293



 Score = 65.5 bits (158), Expect = 7e-13
 Identities = 121/610 (19%), Positives = 239/610 (39%), Gaps = 86/610 (14%)

Query: 186  NTQRICSNLKQELQKQQQ-------DNAKLKVRLQSYASNSDKIN-----------EKVG 227
            NTQ + +  K+ L+K +         +  L+ +     S  D+I+           E   
Sbjct: 900  NTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQ 959

Query: 228  KYKSCLETLQERIATLTS--HKNNQETK-LKDLR---QNHQLYQRRISGFKTSIENLNKT 281
            K +   ET++ER ATL     KNN+  K + DL       Q  Q  I   K  +EN  K 
Sbjct: 960  KIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKR 1019

Query: 282  INDLGKNKKEADAELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKS 341
            + D+  +K+E   E+     ++   + +LD     L +      S +Q +     ++   
Sbjct: 1020 LKDVINSKEE---EIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSK 1076

Query: 342  IENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKH------FDVAKDT-------LNVGLR 388
             ENF  E  A +    NK  E +    ++K+  H      F   +D        +   L+
Sbjct: 1077 NENFKKEKAALNNQLKNKESELLK--MKEKIDNHKKELATFSKQRDDAVSEHGKITAELK 1134

Query: 389  NTTVELSS--NTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEEL 446
             T ++L+   +    +K++Y + +   +++    ++ + +++N+  +  K L   + +E+
Sbjct: 1135 ETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKI--KELEARLSQEI 1192

Query: 447  LTS-------SGNIQTALVSEMNNTRQELLD--DASQTAKNYASLE----NLVKAYKAEI 493
              +       SGN     +S    +     D  D     K Y  L+     + +  + EI
Sbjct: 1193 SLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEI 1252

Query: 494  VQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKN--IEISQISGK 551
             +      R++  E+  ++ S +  +I       +AQ + L K ++  +  I +  I  +
Sbjct: 1253 EEKKNLISRLRFTETRLASSSFEDQKI-------KAQMKKLKKLIQDMDPSIPLDSILNE 1305

Query: 552  EQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNY--ENKISSQNEIVKALVSENDTLK 609
                    E+  N+L    D L++   L+I T+++Y  EN IS+ +   + +  E+    
Sbjct: 1306 PLDNCPDKESDINKLMLEVDYLKR--QLDIETRAHYDAENAISALHSKFRKIQGESSLSS 1363

Query: 610  QRIQQL-VEIKENEQKDHTTKLEAFQ-------------KNNEQLQKLNVEVVQLKAHEL 655
              I +L  E  E   K    KL+                KN + + K   E+   K    
Sbjct: 1364 SDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENY 1423

Query: 656  ELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEE 715
            +L+E        L +    + +S S    L +Q+  L+ + +    +K  L   ++  ++
Sbjct: 1424 KLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQ 1483

Query: 716  VTKNLQQKVQ 725
              +N    +Q
Sbjct: 1484 QFENCMDDLQ 1493



 Score = 55.5 bits (132), Expect = 7e-10
 Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 30/202 (14%)

Query: 526  TKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKS 585
            T+  ++ + + KL  KN ++ ++  K++ L EKN+   NEL+  QD L            
Sbjct: 861  TRTKKFNEQINKL--KN-DLQEMESKKKFLEEKNQKTVNELENTQDLL------------ 905

Query: 586  NYENKISSQNE-IVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLN 644
            N E +   +NE ++  + + ++TL+++   LV  K+   ++   KLE  Q   E  QK+ 
Sbjct: 906  NQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISRE---KLEVAQNLEEAHQKIQ 962

Query: 645  VEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKL 704
                        L+E  R  +  LEK  +   E +  +  L   +   +S +  I   KL
Sbjct: 963  -----------GLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKL 1011

Query: 705  ELQDNLESLEEVTKNLQQKVQS 726
            +L++ ++ L++V  + +++++S
Sbjct: 1012 KLENEIKRLKDVINSKEEEIKS 1033


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil
           protein, putative structural protein involved in
           cytosceleton [Mycoplasma pneumoniae]
          Length = 1033

 Score = 75.5 bits (184), Expect = 6e-16
 Identities = 129/573 (22%), Positives = 240/573 (41%), Gaps = 94/573 (16%)

Query: 178 DVLLEAFTNTQRICSNLKQELQKQQ----------QDNAKLKVRLQSYASNSDKINEKVG 227
           ++L    TN  +  + L+Q+L K Q          ++N  LK  LQ+    ++++N  + 
Sbjct: 398 ELLQNQNTNLTQELNELQQKLFKSQNNSLLLARLEEENRTLKQHLQNNLPEANQLNFVLE 457

Query: 228 KYKSCLETLQERIATLTSHKNNQETKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGK 287
           K    LE LQ+   +LT     Q  + K   + HQ     I   ++ I +L   +  L  
Sbjct: 458 KQ---LEQLQQDKHSLTL----QIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISL-- 508

Query: 288 NKKEADAELMKKGKEIEYLKRELDDC-SGQLSEEKIKNSSLIQE---MGKNREEMIKSIE 343
             K+ +  L    +E  +LK E+      +L++E  K  +L+++   M  + +  +K +E
Sbjct: 509 --KQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDAKLKELE 566

Query: 344 NFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLK 403
           +       HH  Q              +LQ+H +     L+  ++ T  EL      +  
Sbjct: 567 HEQHLAHQHHQEQL------------AQLQRHNEALVKELDQ-VKATNFELG-----LAA 608

Query: 404 QQYEDIKENLEQKMSS---SKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSE 460
           Q +E  K  LEQK SS   S     + +  L +T   L    Q  +L  +   +TA  S+
Sbjct: 609 QGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQN--QLNVLEFTHKEKTAFDSK 666

Query: 461 -MNNTRQELLD---DASQTAKNYA-------SLENLVKAYKAEIVQSNEYEERIKHLESE 509
            +  T+Q+L     D S T +  A       SL + + A + ++    + +E +  L+++
Sbjct: 667 TLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQLQTQ 726

Query: 510 RSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKV 569
              L    N++       + Q+     +L+A + +++      + LT+K  N+ NE    
Sbjct: 727 HELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNE---- 782

Query: 570 QDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTK 629
                 L++LN   K+N+EN           L +E++ L+ +  Q    KE  Q +H + 
Sbjct: 783 ------LHDLN-RVKTNWEN-----------LNTEHNLLQDKYAQQ---KEQMQHEH-SN 820

Query: 630 LEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQV 689
           L   Q  +E LQ+ +   V+ + +E+++          L +     ++ LS  + L+   
Sbjct: 821 LAQIQAEHELLQE-SYNKVKAELNEIQITN--------LNEANAQYQDLLSAYELLQSNH 871

Query: 690 IVLKSEKQDITAEKLELQDNLESLEEVTKNLQQ 722
             LK E Q +    LE Q   + L    ++L Q
Sbjct: 872 NKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQ 904



 Score = 55.8 bits (133), Expect = 5e-10
 Identities = 88/388 (22%), Positives = 169/388 (43%), Gaps = 59/388 (15%)

Query: 390 TTVELSSNT----ETMLKQQYEDIKEN---LEQKMSSSKDEMAKTINELSVTQKGL---- 438
           TTV+ ++ T    +T++ +  ED       L++++++ + ++ +   ++ + Q  L    
Sbjct: 269 TTVDKANLTNALSQTVVIKPAEDSAHQSAVLDKEIATKQAQLQQLQAQIELRQAQLETPP 328

Query: 439 --IMGVQEELLTSSGNI---QTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEI 493
              MGV+E  L    ++   Q  +  EM   +++L       A     LE  + A   + 
Sbjct: 329 VTYMGVEEYKLLPVQDVVPVQPTVSFEMTLLQEQLDKALKHNAALQIQLEEQL-AKPLQY 387

Query: 494 VQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNI---------- 543
            QS   +ERI+ L+++ + L+ + N++   L  K      L+ +LE +N           
Sbjct: 388 DQSPVLQERIELLQNQNTNLTQELNELQQKL-FKSQNNSLLLARLEEENRTLKQHLQNNL 446

Query: 544 ------------EISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKI 591
                       ++ Q+   + SLT + E    + KK Q+QL  + +L     S     I
Sbjct: 447 PEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVI 506

Query: 592 SSQ--NEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNE--------QLQ 641
           S +  N+ +  +  EN+ LK  I+QL E K N   D  TK     K  E        +L+
Sbjct: 507 SLKQTNQRLSLIERENNFLKTEIKQLRETKLN---DENTKYRNLLKQYELMRADSDAKLK 563

Query: 642 KLNVEV-VQLKAHELELEEQNRH----LKNCLEKKETGVEESLSDVKTLKQQVIVLKSEK 696
           +L  E  +  + H+ +L +  RH    +K   + K T  E  L+  +  +QQ +VL+ + 
Sbjct: 564 ELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKATNFELGLA-AQGFEQQKVVLEQKN 622

Query: 697 QDITAEKLELQDNLESLEEVTKNLQQKV 724
             + A     ++N+++L      LQ ++
Sbjct: 623 SSLLASLQAAEENVQALGITNSELQNQL 650


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 55/292 (18%), Positives = 128/292 (43%), Gaps = 22/292 (7%)

Query: 430 ELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAY 489
           E  +  KG +  ++++L +   +++ AL             + +Q  +NY + E +V A 
Sbjct: 68  EAVIHAKGKLRRLEKDLQSVQASLENALA------------ERNQLTENYQAQEKMVAAL 115

Query: 490 KAEIVQSNEYE-ERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQI 548
           + ++   ++ + E+   L+     L  +   +   L  K+A  E  V +   K ++++ +
Sbjct: 116 QHQLAHYDDIQSEKFVGLQKLNQELLQENTNLSDRL--KQAVNE--VAETRPKLVQLNSL 171

Query: 549 SGKEQSLTEKNENLS-NELKKVQDQLEKLNNL----NITTKSNYENKISSQNEIVKALVS 603
             + Q L+++   +  N+ K ++ +L     L    +   ++ + ++ S   E V+ L +
Sbjct: 172 VTRNQQLSDQLSYVEQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTA 231

Query: 604 ENDTLKQRIQQLVEIKENEQKDHTTKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRH 663
           E D ++Q +Q   +  ++ Q        A  +  +Q ++   E  QL A   +LEE  + 
Sbjct: 232 ERDQVQQELQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKE 291

Query: 664 LKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEE 715
           L     + +  +E + ++   LK +     +  Q    +  +LQ  L +L+E
Sbjct: 292 LALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQE 343



 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 67/347 (19%), Positives = 139/347 (40%), Gaps = 39/347 (11%)

Query: 306 LKRELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVH 365
           +K    +  G+  E  I     ++ + K+ + +  S+EN  +E   + L +  + +E++ 
Sbjct: 55  VKEVAPENDGESPEAVIHAKGKLRRLEKDLQSVQASLENALAE--RNQLTENYQAQEKMV 112

Query: 366 DLFEKKLQKHFDVAKDTLNVGLRNTTVEL---SSNTETMLKQQYEDIKEN---------- 412
              + +L  H+D  +    VGL+    EL   ++N    LKQ   ++ E           
Sbjct: 113 AALQHQLA-HYDDIQSEKFVGLQKLNQELLQENTNLSDRLKQAVNEVAETRPKLVQLNSL 171

Query: 413 ------LEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLTSSGNIQTA--------LV 458
                 L  ++S  +   AK I +   +Q+ L     E+   +  N Q +        L 
Sbjct: 172 VTRNQQLSDQLSYVEQNQAKAIEQRLASQEKLWQQRHEQE-QAQWNSQASQWEEQVRQLT 230

Query: 459 SEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQKN 518
           +E +  +QEL     Q+       ENL    +A + +  + EE+    + ERS L+++ N
Sbjct: 231 AERDQVQQELQTARQQSQSAQTQAENL----QAALDRLGQQEEQ---WQGERSQLTAKLN 283

Query: 519 QIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNN 578
           Q+  +         +L  KLE    E  ++  +++      ++   ++ ++Q +L  L  
Sbjct: 284 QLEEAQKELALANAELKVKLETTQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQE 343

Query: 579 LNITTKSNYENKISSQNE-IVKALVSENDTLKQRIQQLVEIKENEQK 624
                K    +++  + + +  A   E   +       VE+K+   K
Sbjct: 344 NLAKAKGEPPSEVPEKTKAVATAPAQEAPVVSPSPPVTVEVKQESPK 390


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 52/272 (19%), Positives = 122/272 (44%), Gaps = 34/272 (12%)

Query: 388 RNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELL 447
           R T V L+  T T++      I     + +     ++   + +L V +  L     E+  
Sbjct: 42  RQTAVLLTVITGTLISASTLGILFTFSKSLREGVFQLDDILAQLRVAKTEL-----EQAS 96

Query: 448 TSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLE 507
            +   I++ L + +   +Q + + + +  +NY     L++       QS    + + +L 
Sbjct: 97  QAKEEIESELTA-VREEQQLVQERSRELNRNYTKALQLLRRVSE---QSRNLRQEVANLS 152

Query: 508 SERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELK 567
           +ER+ L+ QK+ +++   + E Q               SQ+  ++Q L+++ E ++ + K
Sbjct: 153 AERAQLNEQKDSLLAE--SSELQ---------------SQVKLRDQELSKRQERIAQQEK 195

Query: 568 KVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHT 627
            +  Q E++ +L     S     + +Q + ++A +++ DT   ++ Q +  K+N+ +   
Sbjct: 196 VLARQREQVQSLEKRFAS-----LEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQARE 250

Query: 628 TKLEAFQKNNEQLQKLNVEVVQLKAHELELEE 659
            KL+  +     LQ+   EV +L+ +  + +E
Sbjct: 251 EKLQGLETELSFLQR---EVEELERYYQDYQE 279


>MGEN-G37-01-000317 MG312  cytadherence accessory protein (hmw1)
          Length = 1139

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 104/572 (18%), Positives = 219/572 (38%), Gaps = 74/572 (12%)

Query: 192 SNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQE 251
           SNL  E  K   +N  L        SNS+  ++ V  Y+S  E + +        ++N  
Sbjct: 395 SNLYSENNKDATNNDSLNSEFIQLNSNSETASDDV-HYESKSEPIHDYKFGSDLSQSNSN 453

Query: 252 TKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKRELD 311
             L+             + F++  E +++   D+ +N+ E    L +   +  + K+  D
Sbjct: 454 NSLESEPVKFNSETAPDAHFESQSEPVDQVQYDIYQNE-ELKPTLDQPSSDDYFAKQPTD 512

Query: 312 DCSGQLSE--EKIKNSSLIQEMGKNREEMIKSIENF-----FSEDKAHHLLQFNKFEERV 364
           +  G  ++   ++K    + +   + +   K  E+      F  D     L     ++ V
Sbjct: 513 ENYGFDNDLPPEVKQPESVVDQPSSDDHFAKQPESTTDSYSFDSDLPQPTLDQPSLDDHV 572

Query: 365 HDLFEKKLQ-KHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDE 423
              F+   + K     ++   VG       L +N E     + E +  + E K +   D 
Sbjct: 573 QYNFDHHEELKPVAEEQNNYQVGFDQVQANLDNNEEIQPTAEKE-VTTDFESKQAQVVDS 631

Query: 424 MAKTINELSVTQKGLIMGVQEELLTSSGNIQTA-LVSEMNNTRQELLDDASQTAKNYASL 482
               I+             Q++  T S + +T   V + +    E+ D           L
Sbjct: 632 YQLPIDT-----------DQQDQTTFSSSFETQPTVEQFDQVNSEVNDQFKPEITKEPVL 680

Query: 483 ENLVKAYKAEIVQSNEYEERIKHLESE---RSTLSSQKN--QIISSLGTKEAQYEDLVKK 537
           E+     K ++V+++ Y   ++  + +   + T++++K+  QI ++L            +
Sbjct: 681 ESSFN--KQDVVETSNYTNNLQKFDIQSDNKITITTKKSSPQIPTTLPISFVS-----NR 733

Query: 538 LEAKNIEISQISGKEQ--------SLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYE- 588
           +E K +E   +  KE         S+TE ++ L+  L     Q+  LNN +I T  +   
Sbjct: 734 IEYKPVETLALDNKESQQEQITINSITEDSKTLAKTLSVQLQQINSLNNQSIVTSESVRL 793

Query: 589 ---------NKISSQNE------IVKAL--VSENDTL--KQRIQQLVEIKENEQKDHTTK 629
                    N ++S+++       VKA   V E+     KQ ++   E+    +K    K
Sbjct: 794 DKKDDQLTINTVNSEDQQPKIEVFVKAKEPVEEHSITQNKQSVEDKSELDNFNKKSDLYK 853

Query: 630 LEAFQKNNEQLQKLNVEVV-QLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQ 688
           + +  K  E    +N + + Q+  +++ +++   HL + +   +  + E          +
Sbjct: 854 IISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQISE----------R 903

Query: 689 VIVLKSEKQDITAEKLELQDNLESLEEVTKNL 720
            +++K E Q   +  ++  +NL       KNL
Sbjct: 904 YLIIKKELQSELSRLIDQNENLNVQFNNAKNL 935


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 51/253 (20%), Positives = 108/253 (42%), Gaps = 19/253 (7%)

Query: 194  LKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQETK 253
            L QE ++ +   A++   +Q+  +   K++EK+G  K   + L+ ++  L S +  Q+ +
Sbjct: 877  LAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGSTKQERDRLETQLNQLRSQQQEQQWQ 936

Query: 254  LKDLRQNHQLYQRRISGFKTSIENLNKTIND------LGKNKKEADAELMKKGKEIEYLK 307
             + L+ N Q YQ  ++  +T +E L + + D      L +++ EA+ +       +E L+
Sbjct: 937  WEKLQTNQQEYQENLTQLQTQLEALEQDLPDPWPEIPLLQDRDEANLDF---ANILEELE 993

Query: 308  RELDDCSGQLSEEKIKNSSLIQEMGKNREEMIKSIENF--FSEDKAHHLLQFNKFEERVH 365
            R + +   +L   +  N   +QE  K    + +  E     + ++   LL+         
Sbjct: 994  RSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELLLRIEN------ 1047

Query: 366  DLFEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMA 425
              F    ++ F  A D +N   +    ELS     +     ED        ++  K +  
Sbjct: 1048 --FTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGYLQLDDAEDPFNGGLNLVAHPKGKPV 1105

Query: 426  KTINELSVTQKGL 438
            + ++ +S  +K L
Sbjct: 1106 RRLSSMSGGEKSL 1118


>MJAN-DSM-01-001277 MJ1254  hypothetical protein
          Length = 469

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 34/193 (17%)

Query: 541 KNI--EISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSN------------ 586
           KNI  E++ +  K +   E+ +NL+ ++K ++D+L K N  N+  K              
Sbjct: 283 KNIKNELTSLKNKLKEKEEEIKNLAIKIKDLEDKLSKANK-NLLNKDEIISVLNERISEY 341

Query: 587 -------------YENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAF 633
                        Y+ KI S N+ ++ L  END LK ++++L +I +   ++    L +F
Sbjct: 342 ESQIQKLLDENIIYKEKIESLNKYIETLKKENDKLKDKVRELSDIAKKYMEEKRGVLWSF 401

Query: 634 QKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLK 693
              +E   K+ ++++  K H    +++   +    + K + +   L D K ++++ I  +
Sbjct: 402 LTEDE---KIIIDLI--KKHGHITQKEIVEITGMSKPKVSRIISELEDRKIIRKEKIG-R 455

Query: 694 SEKQDITAEKLEL 706
             K  +T E  +L
Sbjct: 456 INKLTLTEESKKL 468



 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 40/165 (24%), Positives = 83/165 (50%), Gaps = 21/165 (12%)

Query: 464 TRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLESERSTLSSQ---KNQI 520
           +++++++          SL+N +K  + EI        +IK LE + S  +     K++I
Sbjct: 274 SKRKIIERTKNIKNELTSLKNKLKEKEEEI---KNLAIKIKDLEDKLSKANKNLLNKDEI 330

Query: 521 ISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLN 580
           IS L  + ++YE  ++KL  +NI   +   K +SL +  E L  E  K++D++ +L+++ 
Sbjct: 331 ISVLNERISEYESQIQKLLDENIIYKE---KIESLNKYIETLKKENDKLKDKVRELSDI- 386

Query: 581 ITTKSNYENK-------ISSQNEIVKALVSENDTLKQRIQQLVEI 618
              K   E K       ++   +I+  L+ ++  + Q+  ++VEI
Sbjct: 387 --AKKYMEEKRGVLWSFLTEDEKIIIDLIKKHGHITQK--EIVEI 427


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.305    0.123    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,508
Number of Sequences: 78
Number of extensions: 4717
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 11
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 51
length of query: 875
length of database: 48,235
effective HSP length: 71
effective length of query: 804
effective length of database: 42,697
effective search space: 34328388
effective search space used: 34328388
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-001450 ORFP:YDR420W  HKR1, Chr IV from
1306256-1311664
         (1802 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-001450 ORFP:YDR420W  HKR1, Chr IV from 1306256-1311664   1398   0.0  

>SCER-S28-01-001450 ORFP:YDR420W  HKR1, Chr IV from 1306256-1311664
          Length = 1802

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 739/1014 (72%), Positives = 739/1014 (72%)

Query: 789  YDIVYSPSTFAAISSGYTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATYEXXXXX 848
            YDIVYSPSTFAAISSGYTP                               IATYE     
Sbjct: 789  YDIVYSPSTFAAISSGYTPSPSASVAMSSTSSSSPYDIVYSLSSSASRSSIATYEFSPSP 848

Query: 849  XXXXXXXXXXXXXXXXXXXXXXXXRYSTTSTIAPTQIHSTLSRITDFLLQTSMAXXXXXX 908
                                    RYSTTSTIAPTQIHSTLSRITDFLLQTSMA      
Sbjct: 849  STSLPTSSTYTYFSSAYAFEFSSERYSTTSTIAPTQIHSTLSRITDFLLQTSMAIQSIVS 908

Query: 909  XXXXXXXXLNDEIHSSALSVFNPSASNLVETSLIISSTQASITSPKNSAKIXXXXXXXXX 968
                    LNDEIHSSALSVFNPSASNLVETSLIISSTQASITSPKNSAKI         
Sbjct: 909  QQISTSSTLNDEIHSSALSVFNPSASNLVETSLIISSTQASITSPKNSAKISSLQSQLSS 968

Query: 969  XTKNPYDTANKNTETSGRSTVVSNFLYTSSAAKPDNEKFXXXXXXXXXXXXXXXXXXXXX 1028
             TKNPYDTANKNTETSGRSTVVSNFLYTSSAAKPDNEKF                     
Sbjct: 969  STKNPYDTANKNTETSGRSTVVSNFLYTSSAAKPDNEKFSATPTEITTISSSSHAYSLSI 1028

Query: 1029 XXXHNSVTGLSHNFVDXXXXXXXXXXXXXXXXXXXXXXETIPASKSVSNTQERITSFTST 1088
               HNSVTGLSHNFVD                      ETIPASKSVSNTQERITSFTST
Sbjct: 1029 PSSHNSVTGLSHNFVDSSKSATSFGYSSSSISSIKLSKETIPASKSVSNTQERITSFTST 1088

Query: 1089 LRANSQSEKSEGRNSVGSLQSSHISSNPSLSTNTKVDSKSLSRKVSKXXXXXXXXXXXXX 1148
            LRANSQSEKSEGRNSVGSLQSSHISSNPSLSTNTKVDSKSLSRKVSK             
Sbjct: 1089 LRANSQSEKSEGRNSVGSLQSSHISSNPSLSTNTKVDSKSLSRKVSKTMGENGEETGLTT 1148

Query: 1149 XXXQYKXXXXXXXXXXXXFTKISIGPATTAVQTQASTNSVFXXXXXXXXXXXXXXXXXXX 1208
               QYK            FTKISIGPATTAVQTQASTNSVF                   
Sbjct: 1149 TKTQYKSSSETSGSYSRSFTKISIGPATTAVQTQASTNSVFTAPALSTYPTTPYPSPNSY 1208

Query: 1209 XWLPTAIIVESSETGPTTASFNPSITGSLPNAIEPAVAVSEPINHTLITIGFTAALNYVF 1268
             WLPTAIIVESSETGPTTASFNPSITGSLPNAIEPAVAVSEPINHTLITIGFTAALNYVF
Sbjct: 1209 AWLPTAIIVESSETGPTTASFNPSITGSLPNAIEPAVAVSEPINHTLITIGFTAALNYVF 1268

Query: 1269 LVQNPLSSAQIFNFLPLVLKYPFSNTSSELDNSIGELSTFILSYRSGXXXXXXXXXXXXX 1328
            LVQNPLSSAQIFNFLPLVLKYPFSNTSSELDNSIGELSTFILSYRSG             
Sbjct: 1269 LVQNPLSSAQIFNFLPLVLKYPFSNTSSELDNSIGELSTFILSYRSGSSTTTLSPKSISS 1328

Query: 1329 XXXXXXXXXXXXXXXXXXXEDLHPPQVDTSSIAVKKIVPMVDSSKAYIVSVAEVYFPTEA 1388
                               EDLHPPQVDTSSIAVKKIVPMVDSSKAYIVSVAEVYFPTEA
Sbjct: 1329 LSVVKKKKNQQKKNATKSTEDLHPPQVDTSSIAVKKIVPMVDSSKAYIVSVAEVYFPTEA 1388

Query: 1389 VTYLQQLILDENSTLYSNPQTPLRSLAGLIDSGIPXXXXXXXXXXXXXYVPXXXXXXXXX 1448
            VTYLQQLILDENSTLYSNPQTPLRSLAGLIDSGIP             YVP         
Sbjct: 1389 VTYLQQLILDENSTLYSNPQTPLRSLAGLIDSGIPLGGLTLYGSGDGGYVPSLTSSSVLD 1448

Query: 1449 XXKGNSQNIDGTYKYGALDDFINSFTDSASAGKYAVKIIIFLIVLTIGXXXXXXXXXXXX 1508
              KGNSQNIDGTYKYGALDDFINSFTDSASAGKYAVKIIIFLIVLTIG            
Sbjct: 1449 SSKGNSQNIDGTYKYGALDDFINSFTDSASAGKYAVKIIIFLIVLTIGVLLWLFVAFFAF 1508

Query: 1509 RHRNILLKRHPRNCIGKXXXXXXXXXXXXXXXXXXGNQVYNEKPPESENESVYSAVDDHY 1568
            RHRNILLKRHPRNCIGK                  GNQVYNEKPPESENESVYSAVDDHY
Sbjct: 1509 RHRNILLKRHPRNCIGKSLNNERELESTELSRSSSGNQVYNEKPPESENESVYSAVDDHY 1568

Query: 1569 IVTGENTVYNTIHRLHYTINDDGDLLYRDAIPLDFDQTNGDDGSGIDSIVRDCVYDKNQD 1628
            IVTGENTVYNTIHRLHYTINDDGDLLYRDAIPLDFDQTNGDDGSGIDSIVRDCVYDKNQD
Sbjct: 1569 IVTGENTVYNTIHRLHYTINDDGDLLYRDAIPLDFDQTNGDDGSGIDSIVRDCVYDKNQD 1628

Query: 1629 ATEAFLNDEESISGILDVDENGDIRLYDSYSDNEESNSFHLPDEVIENYNKNHLCETKLH 1688
            ATEAFLNDEESISGILDVDENGDIRLYDSYSDNEESNSFHLPDEVIENYNKNHLCETKLH
Sbjct: 1629 ATEAFLNDEESISGILDVDENGDIRLYDSYSDNEESNSFHLPDEVIENYNKNHLCETKLH 1688

Query: 1689 GLGTESCTTDDPDTGNQITNEFSTGSQTCLPSTAYTTPLHTNSIKLHTLRYTESSLPKPN 1748
            GLGTESCTTDDPDTGNQITNEFSTGSQTCLPSTAYTTPLHTNSIKLHTLRYTESSLPKPN
Sbjct: 1689 GLGTESCTTDDPDTGNQITNEFSTGSQTCLPSTAYTTPLHTNSIKLHTLRYTESSLPKPN 1748

Query: 1749 QTLFSNXXXXXXXXXXXNGSVSDVHIEELDALDEELYKRMSKVIKQQNHQTTKI 1802
            QTLFSN           NGSVSDVHIEELDALDEELYKRMSKVIKQQNHQTTKI
Sbjct: 1749 QTLFSNLEDLEIEDIDDNGSVSDVHIEELDALDEELYKRMSKVIKQQNHQTTKI 1802



 Score =  461 bits (1185), Expect = e-131
 Identities = 252/435 (57%), Positives = 252/435 (57%)

Query: 17  NAIEAYSNDTIYSTSYNNGIEXXXXXXXXXXXXXXXXNKENAITSSSETTTMAGQYGESG 76
           NAIEAYSNDTIYSTSYNNGIE                NKENAITSSSETTTMAGQYGESG
Sbjct: 17  NAIEAYSNDTIYSTSYNNGIESTPSYSTSAISSTGSSNKENAITSSSETTTMAGQYGESG 76

Query: 77  STTIMDEQETGXXXXXXXXXXXXXXXXXXXXVKKSTEIATPSSSIVPTPLQSYSDESQIS 136
           STTIMDEQETG                    VKKSTEIATPSSSIVPTPLQSYSDESQIS
Sbjct: 77  STTIMDEQETGTSSQYISVTTTTQTSDTMSSVKKSTEIATPSSSIVPTPLQSYSDESQIS 136

Query: 137 QTLSHNPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXPREISPIITTDSQISKEEGTLAQT 196
           QTLSHNPK                            PREISPIITTDSQISKEEGTLAQT
Sbjct: 137 QTLSHNPKSVAESDSDTTSSESSSSVIISTSDSSAVPREISPIITTDSQISKEEGTLAQT 196

Query: 197 SSISETTRIAQMVTRVSQXXXXXXXXXXDGFSSESTQTDFSNTVSFENSVEEEYAMXXXX 256
           SSISETTRIAQMVTRVSQ          DGFSSESTQTDFSNTVSFENSVEEEYAM    
Sbjct: 197 SSISETTRIAQMVTRVSQISSITAASTIDGFSSESTQTDFSNTVSFENSVEEEYAMSKSQ 256

Query: 257 XXXXXXXXXXXXXXXXXXADKXXXXXXXXXXXXXXXXXXXXXXXXXRVAVGVSRPSSITQ 316
                             ADK                         RVAVGVSRPSSITQ
Sbjct: 257 LSESYSSSSTVYSGGESTADKTSSSPITSFSSSYSQTTSTETSESSRVAVGVSRPSSITQ 316

Query: 317 TTSIDSFSMSEVELSTYYDLSAGNYPDQELIVDRPXXXXXXXXXXXXXQGVSRESNTFAV 376
           TTSIDSFSMSEVELSTYYDLSAGNYPDQELIVDRP             QGVSRESNTFAV
Sbjct: 317 TTSIDSFSMSEVELSTYYDLSAGNYPDQELIVDRPATSSTAETSSEASQGVSRESNTFAV 376

Query: 377 SSISTTNFIXXXXXXXXXXXXXXXXXXXXXXHSTFXXXXXXXXXXXXXXXXXXXXXXXXX 436
           SSISTTNFI                      HSTF                         
Sbjct: 377 SSISTTNFIVSSASDTVVSTSSTNTVPYSSVHSTFVHATSSSTYISSSLYSSPSLSASVS 436

Query: 437 XXFGVAPFPSAYISF 451
             FGVAPFPSAYISF
Sbjct: 437 SHFGVAPFPSAYISF 451


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.308    0.125    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,857
Number of Sequences: 78
Number of extensions: 3219
Number of successful extensions: 13
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 1802
length of database: 48,235
effective HSP length: 76
effective length of query: 1726
effective length of database: 42,307
effective search space: 73021882
effective search space used: 73021882
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 99 (42.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from
167807-171817, reverse complement
         (1336 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,...  2375   0.0  

>SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,
            reverse complement
          Length = 1336

 Score = 2375 bits (6154), Expect = 0.0
 Identities = 1221/1336 (91%), Positives = 1221/1336 (91%)

Query: 1    MRSSKSPFKRKSHSRETSHDENTSFFHKRTISGSSAHHSRNVSQGAVPSSAPPVSGGNYS 60
            MRSSKSPFKRKSHSRETSHDENTSFFHKRTISGSSAHHSRNVSQGAVPSSAPPVSGGNYS
Sbjct: 1    MRSSKSPFKRKSHSRETSHDENTSFFHKRTISGSSAHHSRNVSQGAVPSSAPPVSGGNYS 60

Query: 61   HKRNVSRASNSSQTSNFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKF 120
            HKRNVSRASNSSQTSNFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKF
Sbjct: 61   HKRNVSRASNSSQTSNFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKF 120

Query: 121  PSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEK 180
            PSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEK
Sbjct: 121  PSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEK 180

Query: 181  DLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDE 240
            DLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDE
Sbjct: 181  DLEISEGFILTMSKKYYWETNSAKERTVFIKSLITLYIQTFEGHVPELVNWDLSLFYLDE 240

Query: 241  RSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPA 300
            RSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPA
Sbjct: 241  RSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPA 300

Query: 301  SVEYHAGMKSLNKAPYSSNSTLNEVNKRYXXXXXXXXXXXXXXXXXXXXXXXXXXXNEMX 360
            SVEYHAGMKSLNKAPYSSNSTLNEVNKRY                           NEM 
Sbjct: 301  SVEYHAGMKSLNKAPYSSNSTLNEVNKRYELEQQQQQEEAELRRLEEQKRLQLQKENEMK 360

Query: 361  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKQMXXXXXXXXXXXXXXXXXX 420
                                                 AKKQM                  
Sbjct: 361  RLEEERRIKQEERKRQMELEHQRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKER 420

Query: 421  XXXXXXXXQREQETAXXXXXXXXXXXXXXXXXXXXXXXXVDNESYTQEINGKVDNLLEDL 480
                    QREQETA                        VDNESYTQEINGKVDNLLEDL
Sbjct: 421  ELLEIQRKQREQETAERLKKEEQEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLLEDL 480

Query: 481  NAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSISLSDEIA 540
            NAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSISLSDEIA
Sbjct: 481  NAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSISLSDEIA 540

Query: 541  GLNTSNLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEVSIIQEEAPAVSQKLILP 600
            GLNTSNLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEVSIIQEEAPAVSQKLILP
Sbjct: 541  GLNTSNLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEVSIIQEEAPAVSQKLILP 600

Query: 601  EENNESEALIESKEEIKTMENIDDEVLLEILTDINWSIEDDADSMIERIDLRLAETEYLF 660
            EENNESEALIESKEEIKTMENIDDEVLLEILTDINWSIEDDADSMIERIDLRLAETEYLF
Sbjct: 601  EENNESEALIESKEEIKTMENIDDEVLLEILTDINWSIEDDADSMIERIDLRLAETEYLF 660

Query: 661  NQNLLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVES 720
            NQNLLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVES
Sbjct: 661  NQNLLSLQKIGPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVES 720

Query: 721  ANKKLLWNTLDELLKTVSLDEISLNQLLECPIREKNLPWMENQLNLLLKAFQAIGSDGNE 780
            ANKKLLWNTLDELLKTVSLDEISLNQLLECPIREKNLPWMENQLNLLLKAFQAIGSDGNE
Sbjct: 721  ANKKLLWNTLDELLKTVSLDEISLNQLLECPIREKNLPWMENQLNLLLKAFQAIGSDGNE 780

Query: 781  VEYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISHDQMIRILTTLLIF 840
            VEYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISHDQMIRILTTLLIF
Sbjct: 781  VEYNLREISGLKQRLQFYEKVTKIFLNRIVEEMQKKFSNIRGQDISHDQMIRILTTLLIF 840

Query: 841  SPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDTNDEKMNELSLSQLL 900
            SPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDTNDEKMNELSLSQLL
Sbjct: 841  SPLILFCKEISQKSYQAIVENWNVSIQPVYMELWTKKISQLQGIDTNDEKMNELSLSQLL 900

Query: 901  NEWDTFRKERKTNDINPVFKNSFSLLTECLQTMRQECIVYQNFVEVFFHISSKHNFEEYI 960
            NEWDTFRKERKTNDINPVFKNSFSLLTECLQTMRQECIVYQNFVEVFFHISSKHNFEEYI
Sbjct: 901  NEWDTFRKERKTNDINPVFKNSFSLLTECLQTMRQECIVYQNFVEVFFHISSKHNFEEYI 960

Query: 961  KHFNDPDAPPILLDTVKVMQSDREAAVIETQLVSRIFQPIVTRLSSYFVELVKAEPTVAP 1020
            KHFNDPDAPPILLDTVKVMQSDREAAVIETQLVSRIFQPIVTRLSSYFVELVKAEPTVAP
Sbjct: 961  KHFNDPDAPPILLDTVKVMQSDREAAVIETQLVSRIFQPIVTRLSSYFVELVKAEPTVAP 1020

Query: 1021 ALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEIL 1080
            ALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEIL
Sbjct: 1021 ALTFYLENEIKSLESSNHEFLLSAVTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEIL 1080

Query: 1081 PGILDLPVGLKNSEDLFQFAKRSMDIKDTDEGYESIELMNSSFRKLSIAATRSITHKEVN 1140
            PGILDLPVGLKNSEDLFQFAKRSMDIKDTDEGYESIELMNSSFRKLSIAATRSITHKEVN
Sbjct: 1081 PGILDLPVGLKNSEDLFQFAKRSMDIKDTDEGYESIELMNSSFRKLSIAATRSITHKEVN 1140

Query: 1141 SSINPNLSDTAALNNDYMETISLLVNSNWLTEMLSMLNFNKDGIFDTSLQNVKKVFDVEK 1200
            SSINPNLSDTAALNNDYMETISLLVNSNWLTEMLSMLNFNKDGIFDTSLQNVKKVFDVEK
Sbjct: 1141 SSINPNLSDTAALNNDYMETISLLVNSNWLTEMLSMLNFNKDGIFDTSLQNVKKVFDVEK 1200

Query: 1201 ESYASFLLRDTMPKLTAFVYGVSNIIENTNNVNMTNPSRWAAYSRQNLENILLAYTSHEI 1260
            ESYASFLLRDTMPKLTAFVYGVSNIIENTNNVNMTNPSRWAAYSRQNLENILLAYTSHEI
Sbjct: 1201 ESYASFLLRDTMPKLTAFVYGVSNIIENTNNVNMTNPSRWAAYSRQNLENILLAYTSHEI 1260

Query: 1261 ETLVKRLHTHMVNDFGYHQENAINNVLCDKLWSCIQGQTVSLYLKLYTVIDKHYRGTNIR 1320
            ETLVKRLHTHMVNDFGYHQENAINNVLCDKLWSCIQGQTVSLYLKLYTVIDKHYRGTNIR
Sbjct: 1261 ETLVKRLHTHMVNDFGYHQENAINNVLCDKLWSCIQGQTVSLYLKLYTVIDKHYRGTNIR 1320

Query: 1321 FTKNDIISAFEEYKNA 1336
            FTKNDIISAFEEYKNA
Sbjct: 1321 FTKNDIISAFEEYKNA 1336


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.313    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,763
Number of Sequences: 78
Number of extensions: 6076
Number of successful extensions: 34
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 2
length of query: 1336
length of database: 48,235
effective HSP length: 74
effective length of query: 1262
effective length of database: 42,463
effective search space: 53588306
effective search space used: 53588306
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 98 (42.4 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002073 ORFP:YGL073W  HSF1, Chr VII from
368751-371252
         (833 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002073 ORFP:YGL073W  HSF1, Chr VII from 368751-371252    1333   0.0  
SCER-S28-01-002525 ORFP:YGR249W  MGA1, Chr VII from 988045-989415      52   7e-09

>SCER-S28-01-002073 ORFP:YGL073W  HSF1, Chr VII from 368751-371252
          Length = 833

 Score = 1333 bits (3451), Expect = 0.0
 Identities = 674/833 (80%), Positives = 674/833 (80%)

Query: 1   MNNAANTGTTNESNVSDAPRIEPLPSLNDDDIEKILQPNDIFXXXXXXXXXXXXXXXXXX 60
           MNNAANTGTTNESNVSDAPRIEPLPSLNDDDIEKILQPNDIF                  
Sbjct: 1   MNNAANTGTTNESNVSDAPRIEPLPSLNDDDIEKILQPNDIFTTDRTDASTTSSTAIEDI 60

Query: 61  XNPSLDPQXXXXXXXXXXXXHDSRKPSTSTHLVRRGTPLGIYQTNLYGHNSRENTNPNST 120
            NPSLDPQ            HDSRKPSTSTHLVRRGTPLGIYQTNLYGHNSRENTNPNST
Sbjct: 61  INPSLDPQSAASPVPSSSFFHDSRKPSTSTHLVRRGTPLGIYQTNLYGHNSRENTNPNST 120

Query: 121 LLSSKLLAHPPVPYGQNPDLLQHAVYRAQPSSGTTNAQPRQTTRRYQSHKSRPAFVNKLW 180
           LLSSKLLAHPPVPYGQNPDLLQHAVYRAQPSSGTTNAQPRQTTRRYQSHKSRPAFVNKLW
Sbjct: 121 LLSSKLLAHPPVPYGQNPDLLQHAVYRAQPSSGTTNAQPRQTTRRYQSHKSRPAFVNKLW 180

Query: 181 SMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQD 240
           SMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQD
Sbjct: 181 SMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQD 240

Query: 241 VKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKXXXXXXXXXXXXXXXXXXXXIPLD 300
           VKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQK                    IPLD
Sbjct: 241 VKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSNNHNSPSGNGNPANGSNIPLD 300

Query: 301 NAAGXXXXXXXXXXXXXXXXXGHLLQGKTLRLMNEANLGDKNDVTAILGELEQIKYNQIA 360
           NAAG                 GHLLQGKTLRLMNEANLGDKNDVTAILGELEQIKYNQIA
Sbjct: 301 NAAGSNNSNNNISSSNSFFNNGHLLQGKTLRLMNEANLGDKNDVTAILGELEQIKYNQIA 360

Query: 361 ISKDLLRINKDNELLWQENMMARERHRTQQQALEKMFRFLTSIVPHLDPKMIMDGLGDPK 420
           ISKDLLRINKDNELLWQENMMARERHRTQQQALEKMFRFLTSIVPHLDPKMIMDGLGDPK
Sbjct: 361 ISKDLLRINKDNELLWQENMMARERHRTQQQALEKMFRFLTSIVPHLDPKMIMDGLGDPK 420

Query: 421 VNNEKLNSANNIGLNRDNTGTIDELKSNDSFINDDRNSFTNATTNARNNMSPNNDDNSID 480
           VNNEKLNSANNIGLNRDNTGTIDELKSNDSFINDDRNSFTNATTNARNNMSPNNDDNSID
Sbjct: 421 VNNEKLNSANNIGLNRDNTGTIDELKSNDSFINDDRNSFTNATTNARNNMSPNNDDNSID 480

Query: 481 TASTNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPIRPYKQRYLLK 540
           TASTNTT                                       GSPIRPYKQRYLLK
Sbjct: 481 TASTNTTNRKKNIDENIKNNNDIINDIIFNTNLANNLSNYNSNNNAGSPIRPYKQRYLLK 540

Query: 541 NRANSSTSSENPSLTPFDIESNNDRKISEIPFXXXXXXXTDFRPFTSRDPNNQTSENTFD 600
           NRANSSTSSENPSLTPFDIESNNDRKISEIPF       TDFRPFTSRDPNNQTSENTFD
Sbjct: 541 NRANSSTSSENPSLTPFDIESNNDRKISEIPFDDEEEEETDFRPFTSRDPNNQTSENTFD 600

Query: 601 PNRFTMLSDDDLKKDSHTNDNKHNESDLFWDNVHRNIDEQDARLQNLENMVHILSPGYPX 660
           PNRFTMLSDDDLKKDSHTNDNKHNESDLFWDNVHRNIDEQDARLQNLENMVHILSPGYP 
Sbjct: 601 PNRFTMLSDDDLKKDSHTNDNKHNESDLFWDNVHRNIDEQDARLQNLENMVHILSPGYPN 660

Query: 661 XXXXXXXXXXXXXXXMESAVNVNSPGFNLQDYLTGEXXXXXXXXXXXXXXXXXTPLPMPN 720
                          MESAVNVNSPGFNLQDYLTGE                 TPLPMPN
Sbjct: 661 KSFNNKTSSTNTNSNMESAVNVNSPGFNLQDYLTGESNSPNSVHSVPSNGSGSTPLPMPN 720

Query: 721 DNDTEHASTSVNQGENGSGLTPFLTVDDHTLNDNNTSEGSTRVSPDIKFSATENTKVSDN 780
           DNDTEHASTSVNQGENGSGLTPFLTVDDHTLNDNNTSEGSTRVSPDIKFSATENTKVSDN
Sbjct: 721 DNDTEHASTSVNQGENGSGLTPFLTVDDHTLNDNNTSEGSTRVSPDIKFSATENTKVSDN 780

Query: 781 LPSFNDHSYSTQADTAPENAKKRFXXXXXXXXXXXXQDPTEYNDHRLPKRAKK 833
           LPSFNDHSYSTQADTAPENAKKRF            QDPTEYNDHRLPKRAKK
Sbjct: 781 LPSFNDHSYSTQADTAPENAKKRFVEEIPEPAIVEIQDPTEYNDHRLPKRAKK 833


>SCER-S28-01-002525 ORFP:YGR249W  MGA1, Chr VII from 988045-989415
          Length = 456

 Score = 52.0 bits (123), Expect = 7e-09
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 175 FVNKLWSMLNDDSNTKLIQWAEDGKS--FIVTNREEFVHQILPKYFKHSNFASFVRQLNM 232
           FV++L ++L +    K I W+    +  F+      F   +L +YFKH N  SFVRQL+M
Sbjct: 6   FVHQLHAILLEPEVNKWIYWSPTDNTVFFLKPYDPNFSTHVLKRYFKHGNVNSFVRQLHM 65

Query: 233 YGWHKVQDVKSGSIQSSSDD-------KWQFENEN---FIRGREDLLEKIIRQ 275
           YG+HK+        QSS+++       +W+F + +   F      +L KI R+
Sbjct: 66  YGFHKLSHPSPD--QSSANNGNVKELVEWKFTHPSGFFFKEANAGILNKIQRK 116


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,595
Number of Sequences: 78
Number of extensions: 3704
Number of successful extensions: 109
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 2
length of query: 833
length of database: 48,235
effective HSP length: 70
effective length of query: 763
effective length of database: 42,775
effective search space: 32637325
effective search space used: 32637325
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 96 (41.6 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002137 ORFP:YGL137W  SEC27, Chr VII from
249872-249889,250090-252741
         (889 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002137 ORFP:YGL137W  SEC27, Chr VII from 249872-2498...  1731   0.0  

>SCER-S28-01-002137 ORFP:YGL137W  SEC27, Chr VII from
           249872-249889,250090-252741
          Length = 889

 Score = 1731 bits (4483), Expect = 0.0
 Identities = 858/889 (96%), Positives = 858/889 (96%)

Query: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
           MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60

Query: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
           GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT
Sbjct: 61  GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120

Query: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
           VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180

Query: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
           TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240

Query: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
           PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300

Query: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360
           GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ
Sbjct: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360

Query: 361 SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420
           SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK
Sbjct: 361 SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420

Query: 421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480
           NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG
Sbjct: 421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480

Query: 481 ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540
           ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK
Sbjct: 481 ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540

Query: 541 WVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEIS 600
           WVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEIS
Sbjct: 541 WVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEIS 600

Query: 601 LEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE 660
           LEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE
Sbjct: 601 LEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE 660

Query: 661 LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLESLFLLHSSF 720
           LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLESLFLLHSSF
Sbjct: 661 LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLESLFLLHSSF 720

Query: 721 NNKEGLVTLAKDAERAGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDD 780
           NNKEGLVTLAKDAERAGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDD
Sbjct: 721 NNKEGLVTLAKDAERAGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDD 780

Query: 781 AVNDIVTKWKENLILNGKNTVSERVCGAEGLPGSSSSGDAQPLIDLDSTPAPEQADENKE 840
           AVNDIVTKWKENLILNGKNTVSERVCGAEGLPGSSSSGDAQPLIDLDSTPAPEQADENKE
Sbjct: 781 AVNDIVTKWKENLILNGKNTVSERVCGAEGLPGSSSSGDAQPLIDLDSTPAPEQADENKE 840

Query: 841 AEVEDSEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPEPVEEES 889
           AEVEDSEF                               AVPEPVEEES
Sbjct: 841 AEVEDSEFKESNSEAVEAEKKEEEAPQQQQSEQQPEQGEAVPEPVEEES 889


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.316    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,470
Number of Sequences: 78
Number of extensions: 3899
Number of successful extensions: 37
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 1
length of query: 889
length of database: 48,235
effective HSP length: 71
effective length of query: 818
effective length of database: 42,697
effective search space: 34926146
effective search space used: 34926146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 97 (42.0 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002414 ORFP:YGR142W  BTN2, Chr VII from
772449-773681
         (410 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002414 ORFP:YGR142W  BTN2, Chr VII from 772449-773681     627   0.0  

>SCER-S28-01-002414 ORFP:YGR142W  BTN2, Chr VII from 772449-773681
          Length = 410

 Score =  627 bits (1617), Expect = 0.0
 Identities = 325/410 (79%), Positives = 325/410 (79%)

Query: 1   MFSIFNSPCVFEQLPSFSQPLHSRYFDCSSPVSYYPECKRRKAIKANLRAPKKSDANCSE 60
           MFSIFNSPCVFEQLPSFSQPLHSRYFDCSSPVSYYPECKRRKAIKANLRAPKKSDANCSE
Sbjct: 1   MFSIFNSPCVFEQLPSFSQPLHSRYFDCSSPVSYYPECKRRKAIKANLRAPKKSDANCSE 60

Query: 61  PLRYALAETPNGYTLSLSKRIPYELFSKYVNEKLGELKENHYRPTYHVVQDFFGNQYYVE 120
           PLRYALAETPNGYTLSLSKRIPYELFSKYVNEKLGELKENHYRPTYHVVQDFFGNQYYVE
Sbjct: 61  PLRYALAETPNGYTLSLSKRIPYELFSKYVNEKLGELKENHYRPTYHVVQDFFGNQYYVE 120

Query: 121 DEADEDALLRSALKDLDFRAIGKKIAKDLFQDYEIELNHRGDELSILSKKDKIFKEFSLD 180
           DEADEDALLRSALKDLDFRAIGKKIAKDLFQDYEIELNHRGDELSILSKKDKIFKEFSLD
Sbjct: 121 DEADEDALLRSALKDLDFRAIGKKIAKDLFQDYEIELNHRGDELSILSKKDKIFKEFSLD 180

Query: 181 QVFEDVFVIGCGVENIDDGSREKYALLKIGLVKHEEEISEGGINEPKMPIIESKIDESHD 240
           QVFEDVFVIGCGVENIDDGSREKYALLKIGLVKHEEEISEGGINEPKMPIIESKIDESHD
Sbjct: 181 QVFEDVFVIGCGVENIDDGSREKYALLKIGLVKHEEEISEGGINEPKMPIIESKIDESHD 240

Query: 241 DVNMXXXXXXXXXXXXXXXXXXXDQIKKWIEEERLMQEESRXXXXXXXXXXXXXXXXXXX 300
           DVNM                   DQIKKWIEEERLMQEESR                   
Sbjct: 241 DVNMSESLKEEEAEKAKEPLTKEDQIKKWIEEERLMQEESRKSEQEKAAKEDEERQKKEK 300

Query: 301 XXXXXXXXXSLINKQKTKRSQQKKLQNSKSLPIXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
                    SLINKQKTKRSQQKKLQNSKSLPI                           
Sbjct: 301 EARLKARKESLINKQKTKRSQQKKLQNSKSLPISEIEASNKNNNSNSGSAESDNESINSD 360

Query: 361 XXTTLDFSVSGNTLKKHASPLLXXXXXXXXXRYNESLSRSPKGNSIIEEI 410
             TTLDFSVSGNTLKKHASPLL         RYNESLSRSPKGNSIIEEI
Sbjct: 361 SDTTLDFSVSGNTLKKHASPLLEDVEDEEVDRYNESLSRSPKGNSIIEEI 410


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.314    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,898
Number of Sequences: 78
Number of extensions: 1393
Number of successful extensions: 6
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 1
length of query: 410
length of database: 48,235
effective HSP length: 65
effective length of query: 345
effective length of database: 43,165
effective search space: 14891925
effective search space used: 14891925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002525 ORFP:YGR249W  MGA1, Chr VII from
988045-989415
         (456 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002525 ORFP:YGR249W  MGA1, Chr VII from 988045-989415     676   0.0  
SCER-S28-01-002073 ORFP:YGL073W  HSF1, Chr VII from 368751-371252      52   4e-09

>SCER-S28-01-002525 ORFP:YGR249W  MGA1, Chr VII from 988045-989415
          Length = 456

 Score =  676 bits (1743), Expect = 0.0
 Identities = 347/456 (76%), Positives = 347/456 (76%)

Query: 1   MQPKTFVHQLHAILLEPEVNKWIYWSPTDNTVFFLKPYDPNFSTHVLKRYFKHGNVNSFV 60
           MQPKTFVHQLHAILLEPEVNKWIYWSPTDNTVFFLKPYDPNFSTHVLKRYFKHGNVNSFV
Sbjct: 1   MQPKTFVHQLHAILLEPEVNKWIYWSPTDNTVFFLKPYDPNFSTHVLKRYFKHGNVNSFV 60

Query: 61  RQLHMYGFHKLSHPSPDQSSANNGNVKELVEWKFTHPSGFFFKEANAGILNKIQRKSTGV 120
           RQLHMYGFHKLSHPSPDQSSANNGNVKELVEWKFTHPSGFFFKEANAGILNKIQRKSTGV
Sbjct: 61  RQLHMYGFHKLSHPSPDQSSANNGNVKELVEWKFTHPSGFFFKEANAGILNKIQRKSTGV 120

Query: 121 GKDGKRKNILSPISVSYVDASRLNVLSQQSGPVSAREPSNMFMGSPVHYSTXXXXXXXXX 180
           GKDGKRKNILSPISVSYVDASRLNVLSQQSGPVSAREPSNMFMGSPVHYST         
Sbjct: 121 GKDGKRKNILSPISVSYVDASRLNVLSQQSGPVSAREPSNMFMGSPVHYSTSQSPPHISI 180

Query: 181 XXXXXXXGPYLISSLPPQQPTVNMMRRQSISARMMNSYDYPNQFSTQDSIXXXXXXXXXX 240
                  GPYLISSLPPQQPTVNMMRRQSISARMMNSYDYPNQFSTQDSI          
Sbjct: 181 PQQQQSSGPYLISSLPPQQPTVNMMRRQSISARMMNSYDYPNQFSTQDSIVQPQQPQQVL 240

Query: 241 XXXXXXGPPMKKXXXXXXXXXXXXXXXPIVNYPMPYHPGAFAXXXXXXXXXXXXXXXXXX 300
                 GPPMKK               PIVNYPMPYHPGAFA                  
Sbjct: 241 SPQALSGPPMKKSGTLSSTDDLKTTSLPIVNYPMPYHPGAFAQQQQQQQQPLPTVPPYSS 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXGVCNNNVTLPKKSNISERQALDNHIQTLKNSLSTITDL 360
                                 GVCNNNVTLPKKSNISERQALDNHIQTLKNSLSTITDL
Sbjct: 301 YSTPFPSMMNSLSNSASNSPALGVCNNNVTLPKKSNISERQALDNHIQTLKNSLSTITDL 360

Query: 361 IEKHINSASQDENKTLTNDAMNKDLRTSLSLLQNSKEEIIQLESKWMSMQSVKTTALPLQ 420
           IEKHINSASQDENKTLTNDAMNKDLRTSLSLLQNSKEEIIQLESKWMSMQSVKTTALPLQ
Sbjct: 361 IEKHINSASQDENKTLTNDAMNKDLRTSLSLLQNSKEEIIQLESKWMSMQSVKTTALPLQ 420

Query: 421 ETTNXXXXXXXXXXXXXXXXXXXXXXGEVATKPASY 456
           ETTN                      GEVATKPASY
Sbjct: 421 ETTNTSSTLTSLTSSIIPKSIPIITKGEVATKPASY 456


>SCER-S28-01-002073 ORFP:YGL073W  HSF1, Chr VII from 368751-371252
          Length = 833

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 14/113 (12%)

Query: 6   FVHQLHAILLEPEVNKWIYWSPTDNTVFFLKPYDPNFSTHVLKRYFKHGNVNSFVRQLHM 65
           FV++L ++L +    K I W+    +  F+      F   +L +YFKH N  SFVRQL+M
Sbjct: 175 FVNKLWSMLNDDSNTKLIQWAEDGKS--FIVTNREEFVHQILPKYFKHSNFASFVRQLNM 232

Query: 66  YGFHKLSHPSPD--QSSANNGNVKELVEWKFTHPSGFFFKEANAGILNKIQRK 116
           YG+HK+        QSS+++       +W+F + +   F      +L KI R+
Sbjct: 233 YGWHKVQDVKSGSIQSSSDD-------KWQFENEN---FIRGREDLLEKIIRQ 275


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.314    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,430
Number of Sequences: 78
Number of extensions: 1397
Number of successful extensions: 16
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 456
length of database: 48,235
effective HSP length: 66
effective length of query: 390
effective length of database: 43,087
effective search space: 16803930
effective search space used: 16803930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 94 (40.8 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002584 ORFP:YHL009W-B  YHL009W-B, Chr VIII from
85904-86989,86991-91313
         (1802 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002584 ORFP:YHL009W-B  YHL009W-B, Chr VIII from 8590...  3508   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036       57   4e-10
SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443     49   1e-07

>SCER-S28-01-002584 ORFP:YHL009W-B  YHL009W-B, Chr VIII from
            85904-86989,86991-91313
          Length = 1802

 Score = 3508 bits (9097), Expect = 0.0
 Identities = 1750/1802 (97%), Positives = 1750/1802 (97%)

Query: 1    MATPVRDETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIKDEQVKQYQRNLNRFKT 60
            MATPVRDETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIKDEQVKQYQRNLNRFKT
Sbjct: 1    MATPVRDETRNVIDDNISARIQSKVKTNDTVRQTPSSLRKVSIKDEQVKQYQRNLNRFKT 60

Query: 61   ILNGLKAEEEKLSETDDIQMLAEKLLKLGETIDKVENRIVDLVEKIQLLETNENNNILHE 120
            ILNGLKAEEEKLSETDDIQMLAEKLLKLGETIDKVENRIVDLVEKIQLLETNENNNILHE
Sbjct: 61   ILNGLKAEEEKLSETDDIQMLAEKLLKLGETIDKVENRIVDLVEKIQLLETNENNNILHE 120

Query: 121  HIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPILLNNFKKFIKKYQFDDVFEN 180
            HIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPILLNNFKKFIKKYQFDDVFEN
Sbjct: 121  HIDATGTYYLFDTLTSTNKRFYPKDCVFDYRTNNVENIPILLNNFKKFIKKYQFDDVFEN 180

Query: 181  DIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRIIDGLKNKYRSLHGRDVRIRAWE 240
            DIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRIIDGLKNKYRSLHGRDVRIRAWE
Sbjct: 181  DIIEIDPRENEILCKIIKEGLGESLDIMNTNTTDIFRIIDGLKNKYRSLHGRDVRIRAWE 240

Query: 241  KVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVK 300
            KVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVK
Sbjct: 241  KVLVDTTCRNSALLMNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVK 300

Query: 301  QRLYNIPHNVGINHEEFLINTVIETVIDLSPIADDQIENSCMYCKSVFHCSINCKKKPNR 360
            QRLYNIPHNVGINHEEFLINTVIETVIDLSPIADDQIENSCMYCKSVFHCSINCKKKPNR
Sbjct: 301  QRLYNIPHNVGINHEEFLINTVIETVIDLSPIADDQIENSCMYCKSVFHCSINCKKKPNR 360

Query: 361  ELGLTRPISQKPIIYKVHRDNNNLSPVQNEQKSWNKTQKKSNKVYNSKKLVIIDTGSGVN 420
            ELGLTRPISQKPIIYKVHRDNNNLSPVQNEQKSWNKTQKKSNKVYNSKKLVIIDTGSGVN
Sbjct: 361  ELGLTRPISQKPIIYKVHRDNNNLSPVQNEQKSWNKTQKKSNKVYNSKKLVIIDTGSGVN 420

Query: 421  ITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCLLTYYVPEEE 480
            ITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCLLTYYVPEEE
Sbjct: 421  ITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCLLTYYVPEEE 480

Query: 481  STIISCYDLAKKTKMVLSRKYTRLGNXXXXXXXXXVNGVIHVKMNELIERPSDDSKINAI 540
            STIISCYDLAKKTKMVLSRKYTRLGN         VNGVIHVKMNELIERPSDDSKINAI
Sbjct: 481  STIISCYDLAKKTKMVLSRKYTRLGNKIIKIKTKIVNGVIHVKMNELIERPSDDSKINAI 540

Query: 541  KPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCK 600
            KPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCK
Sbjct: 541  KPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCK 600

Query: 601  ISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTS 660
            ISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTS
Sbjct: 601  ISKATKRNHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTS 660

Query: 661  THFNKNAETILAQIRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTS 720
            THFNKNAETILAQIRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTS
Sbjct: 661  THFNKNAETILAQIRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTS 720

Query: 721  TQDHAANGRAERYIRTIVTDATTLLRQSNLRVKFWEYAVTSATNIRNCLEHKSTGKLPLK 780
            TQDHAANGRAERYIRTIVTDATTLLRQSNLRVKFWEYAVTSATNIRNCLEHKSTGKLPLK
Sbjct: 721  TQDHAANGRAERYIRTIVTDATTLLRQSNLRVKFWEYAVTSATNIRNCLEHKSTGKLPLK 780

Query: 781  AISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKI 840
            AISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKI
Sbjct: 781  AISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKI 840

Query: 841  VTSDNYTIPNYTMDGRVRNTQNIYKSHQFSSHNDNEEDQIETVTNLCEALENYEDDNKPI 900
            VTSDNYTIPNYTMDGRVRNTQNIYKSHQFSSHNDNEEDQIETVTNLCEALENYEDDNKPI
Sbjct: 841  VTSDNYTIPNYTMDGRVRNTQNIYKSHQFSSHNDNEEDQIETVTNLCEALENYEDDNKPI 900

Query: 901  TRLEDLFTEEELSQIDSNAKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNTSIST 960
            TRLEDLFTEEELSQIDSNAKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNTSIST
Sbjct: 901  TRLEDLFTEEELSQIDSNAKYPSPSNNLEGDLDYVFSDVEESGDYDVESELSTTNTSIST 960

Query: 961  DKNKILSNKDFNSELASTEISISEIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGSK 1020
            DKNKILSNKDFNSELASTEISISEIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGSK
Sbjct: 961  DKNKILSNKDFNSELASTEISISEIDKKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGSK 1020

Query: 1021 NTIKINDENRISDRIRSKNIGSILNTGLSRCVDITDESITNKDESMHNAKPELIQEQFNK 1080
            NTIKINDENRISDRIRSKNIGSILNTGLSRCVDITDESITNKDESMHNAKPELIQEQFNK
Sbjct: 1021 NTIKINDENRISDRIRSKNIGSILNTGLSRCVDITDESITNKDESMHNAKPELIQEQFNK 1080

Query: 1081 TNHETSFPKEGSIGTNVKFRNTDNEISLKTGDTSLPIKTLESINNHHSNDYSTNKVEKFE 1140
            TNHETSFPKEGSIGTNVKFRNTDNEISLKTGDTSLPIKTLESINNHHSNDYSTNKVEKFE
Sbjct: 1081 TNHETSFPKEGSIGTNVKFRNTDNEISLKTGDTSLPIKTLESINNHHSNDYSTNKVEKFE 1140

Query: 1141 KENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEAS 1200
            KENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEAS
Sbjct: 1141 KENHHPPPIEDIVDMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEAS 1200

Query: 1201 GSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNME 1260
            GSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNME
Sbjct: 1201 GSPVQTVNKSAFLNKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNME 1260

Query: 1261 TVSAQKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNL 1320
            TVSAQKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNL
Sbjct: 1261 TVSAQKIRAIYYNEAISKNPDLKEKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNL 1320

Query: 1321 IVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMIANNRNMFMK 1380
            IVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMIANNRNMFMK
Sbjct: 1321 IVPTNTIFTKKRNGIYKARIVCRGDTQSPDTYSVITTESLNHNHIKIFLMIANNRNMFMK 1380

Query: 1381 TLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKD 1440
            TLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKD
Sbjct: 1381 TLDINHAFLYAKLEEEIYIPHPHDRRCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKD 1440

Query: 1441 NSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKXXXXXXXXXXXX 1500
            NSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELK            
Sbjct: 1441 NSYTPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDT 1500

Query: 1501 XXXXMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQM 1560
                MDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQM
Sbjct: 1501 DILGMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQM 1560

Query: 1561 SEEEFRQGVLKLQQLLGELNYVRHKCRYDINFAVKKVARLVNYPHERVFYMIYKIIQYLV 1620
            SEEEFRQGVLKLQQLLGELNYVRHKCRYDINFAVKKVARLVNYPHERVFYMIYKIIQYLV
Sbjct: 1561 SEEEFRQGVLKLQQLLGELNYVRHKCRYDINFAVKKVARLVNYPHERVFYMIYKIIQYLV 1620

Query: 1621 RYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCV 1680
            RYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCV
Sbjct: 1621 RYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCV 1680

Query: 1681 SSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPXXXXX 1740
            SSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQP     
Sbjct: 1681 SSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFT 1740

Query: 1741 XXXXXXXXXXXXXXXXXXXXXXGKGNIADLLTKPVSASDFKRFIQVLKNKITSQDILAST 1800
                                  GKGNIADLLTKPVSASDFKRFIQVLKNKITSQDILAST
Sbjct: 1741 WIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVLKNKITSQDILAST 1800

Query: 1801 DY 1802
            DY
Sbjct: 1801 DY 1802


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 226/1168 (19%), Positives = 434/1168 (37%), Gaps = 199/1168 (17%)

Query: 255  MNKLQKLVLMEKWIFSKCCQDCPNLKDYLQEAIMGTLHESLRNSVKQRLYNIPHNVGINH 314
            + KLQ+     K   +    +  +  + L E ++   +E      K ++ N  H+  +  
Sbjct: 732  VEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHS-SLKE 790

Query: 315  EEFLINTVIETVID----------LSPIADDQIENSCMYCKSVFHCSINCKKKPNRELGL 364
               ++ T ++ V D          +    D + + + +  KS  H   +  K    E GL
Sbjct: 791  NFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIK--TLEKGL 848

Query: 365  TRPISQKPI----IYKVHRD----NNNLSPVQNEQKSWNKTQKKSNKVYNSKKLVIIDTG 416
               +SQK      I K+ +D    +  +  V+   K+  K + KSN V + K+   +   
Sbjct: 849  ETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSN-VNHQKETKSLKED 907

Query: 417  SGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNN-----TDNKCL 471
                IT  K +  N E+           K   +S +   Y      H+N     T+    
Sbjct: 908  IAAKITEIKAINENLEEMKIQCNNLSKEKEH-ISKELVEYKSRFQSHDNLVAKLTEKLKS 966

Query: 472  LTYYVPEEESTIISCYDLAKKTKMVLSRKYTRLGNXXXXXXXXXVNGVIHVKMNELIERP 531
            L     + ++   S     +++K   S + + L N         ++ +   K N  IER 
Sbjct: 967  LANNYKDMQAENESLIKAVEESKNESSIQLSNLQNK--------IDSMSQEKENFQIERG 1018

Query: 532  SDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEESLDLIKEP 591
            S +  I  +K T S   +  +  I+  D+ K                + YE  + L+KE 
Sbjct: 1019 SIEKNIEQLKKTISDLEQTKEEIISKSDSSK----------------DEYESQISLLKEK 1062

Query: 592  NEFWC-----QTCKISKATKRNH--------YTGSMNNHSTDHEPGSSWCMDIFGPVSSS 638
             E           KIS+ TK           Y    N   T  E       ++    +  
Sbjct: 1063 LETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEV--KENEE 1120

Query: 639  NADTKRYMLIMVDNNTRYCMTSTHFN-----KNAETILAQIRKNIQYV---ETQFDRKVR 690
            +   ++  L      T+  + S   N     K  E + AQ++K  + +   E Q++ ++ 
Sbjct: 1121 HLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEIS 1180

Query: 691  EINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIVTDATTLLRQSNL 750
            ++N     E T+ Q E   I K    +    +   +    +  ++    DA       NL
Sbjct: 1181 QLND----EITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDAL------NL 1230

Query: 751  RVKFWEYAVTSATNIRNCLEHKSTGKLPLKAISRQPVTVR-LMSFLPFGEKGIIWNHNHK 809
            ++K  E    + TN  + LE        +K++  + V ++ L     F EK +  +    
Sbjct: 1231 QIK--ELKKKNETNEASLLES-------IKSVESETVKIKELQDECNFKEKEV--SELED 1279

Query: 810  KLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTSDNYTIPNYTMDGRVRNTQNIYKSHQF 869
            KLK S        +D NS  Y        KI                           + 
Sbjct: 1280 KLKAS--------EDKNSK-YLELQKESEKI-------------------------KEEL 1305

Query: 870  SSHNDNEEDQIETVTNLCEALENYEDDNKPITRLEDLFTEEELSQIDSNAKYPSPSNNLE 929
             +     + Q+E +TNL +A E  E +   ++RL+   +EE                N E
Sbjct: 1306 DAKTTELKIQLEKITNLSKAKEKSESE---LSRLKKTSSEER--------------KNAE 1348

Query: 930  GDLDYVFSDVE-ESGDYDVESELSTTNTSISTDK--NKILSNKDFNSELAS-TEISISEI 985
              L+ + ++++ ++  ++ E +L    +S  T +   KI + +D    L +  E+   EI
Sbjct: 1349 EQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEI 1408

Query: 986  D--KKGLINTSHIDEDKYDEKVHRIPSIIQEKLVGSKNTIKINDENRISDRIRSKNIGSI 1043
            D  +  L   S  +++  +EK + I S+ Q++++  K+ I  NDE  +S    +K     
Sbjct: 1409 DNTRSELEKVSLSNDELLEEKQNTIKSL-QDEILSYKDKITRNDEKLLSIERDNKRDLES 1467

Query: 1044 LNTGLSRCVDI---TDESITNKDESMHNAKPELIQ-EQFNKTNHETSFPKEGSIGTNVK- 1098
            L   L    +     +E +   +E     K EL + ++  K    T    E  + ++++ 
Sbjct: 1468 LKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMET 1527

Query: 1099 FRNTDNEISLKTGDTSLPIKTLESINNHHSNDYSTNKVEKFEKENHHPPPIEDI-----V 1153
             R +D ++          IK L+     H      +++ + EK+      IE++     +
Sbjct: 1528 IRKSDEKLEQSKKSAEEDIKNLQ-----HEKSDLISRINESEKD------IEELKSKLRI 1576

Query: 1154 DMSDQTDMESNCQDGNNLKELKVTDKNVPTDNGTNVSPRLEQNIEASGSPVQTVNKSAFL 1213
            +    +++E+  Q+ NN +E K+    +  +  T +  +LE +IE      Q   KS   
Sbjct: 1577 EAKSGSELETVKQELNNAQE-KI---RINAEENTVLKSKLE-DIERELKDKQAEIKSNQE 1631

Query: 1214 NKEFSSLNMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNMETVSAQKIRAIYYN 1273
             KE  +  +K   +  D     T  + ++ ++  +    K   +  +      +    YN
Sbjct: 1632 EKELLTSRLKELEQELDS----TQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYN 1687

Query: 1274 EAISKNPDLKE-----------KHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNLIV 1322
            + ++K    K            + +  +   KEL NLK       +    RSEI D +++
Sbjct: 1688 DLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLL 1747

Query: 1323 PTNTIFTKKRNGIYKARIVCRGDTQSPD 1350
             T+     ++N  Y++++   G   S D
Sbjct: 1748 VTD---LDEKNAKYRSKLKDLGVEISSD 1772


>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 68/342 (19%), Positives = 146/342 (42%), Gaps = 44/342 (12%)

Query: 1000 KYDEKVHRIPSIIQE-----KLVGSKNTIKINDENRISDRIRSKNIGSILNTGLSRCVDI 1054
            K++E+++++ + +QE     K +  KN   +N+     D +  +      N  L   V  
Sbjct: 865  KFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKT 924

Query: 1055 TDESITNKDESMHNAKPELIQEQFN-KTNHETSFPKEGSIGTNVKFRNTDNEISLKTGDT 1113
            + E++  + + + + K E+ +E+     N E +  K   +   ++ R    E  L + + 
Sbjct: 925  SSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLE-KLHSKNN 983

Query: 1114 SLPIKTLESINNHHSNDYSTN---KVEKFEKENHHPPPIEDIVDMSDQTDMESNCQDGNN 1170
             L IK +  +N   S + S+    K  K + EN     ++D+++  ++     N +  ++
Sbjct: 984  EL-IKQISDLNCDISKEQSSQSLIKESKLKLEN-EIKRLKDVINSKEEEIKSFNDKLSSS 1041

Query: 1171 LKELKVTDKNVPTDNGTNVSPRLEQNIEASGSPVQTVNK----------SAFLNKEFSSL 1220
             ++L +  K V  +   N++    Q++    S +++ N+          +   NKE   L
Sbjct: 1042 EEDLDI--KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELL 1099

Query: 1221 NMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNMETVSAQKIRAIYYNEAISKNP 1280
             MK K   H K   L ++  +RD   S+  ++        T   ++ R I   E  S   
Sbjct: 1100 KMKEKIDNHKK--ELATFSKQRDDAVSEHGKI--------TAELKETR-IQLTEYKSNYQ 1148

Query: 1281 DLKEKHEYKQAYHKE---------LQNLKDMKVFDVDVKYSR 1313
             +KE++   Q   KE         +++L D K+ +++ + S+
Sbjct: 1149 KIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQ 1190


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,443
Number of Sequences: 78
Number of extensions: 9390
Number of successful extensions: 67
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 11
length of query: 1802
length of database: 48,235
effective HSP length: 76
effective length of query: 1726
effective length of database: 42,307
effective search space: 73021882
effective search space used: 73021882
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 99 (42.7 bits)
BLASTP 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from
151657-157443
         (1928 letters)

Database: tst.fasta 
           78 sequences; 48,235 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443   3607   0.0  
SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036      150   3e-38
MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)       125   1e-30
SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054     80   6e-17
MGEN-G37-01-000335 MG328  conserved hypothetical protein               75   1e-15
MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil pro...    72   2e-14
SYNE-PCC-01-000727 sll1120                                             60   5e-11
MJAN-DSM-01-001277 MJ1254  hypothetical protein                        54   5e-09
SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,...    53   8e-09
SYNE-PCC-01-001071 sll1583                                             53   1e-08
SYNE-PCC-01-000943 sll1424                                             52   1e-08
SCER-S28-01-002584 ORFP:YHL009W-B  YHL009W-B, Chr VIII from 8590...    49   1e-07

>SCER-S28-01-002651 ORFP:YHR023W  MYO1, Chr VIII from 151657-157443
          Length = 1928

 Score = 3607 bits (9354), Expect = 0.0
 Identities = 1863/1928 (96%), Positives = 1863/1928 (96%)

Query: 1    MTGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIVHPLDSTEVSNLVQ 60
            MTGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIVHPLDSTEVSNLVQ
Sbjct: 1    MTGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIVHPLDSTEVSNLVQ 60

Query: 61   VRISDVFPVNPSTFDKVENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHN 120
            VRISDVFPVNPSTFDKVENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHN
Sbjct: 61   VRISDVFPVNPSTFDKVENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHN 120

Query: 121  LNLYSEDHINLYHNKHNRLSKSRLDENSHEKLPPHIFAIAEEAYENLLSEGKDQSILVTG 180
            LNLYSEDHINLYHNKHNRLSKSRLDENSHEKLPPHIFAIAEEAYENLLSEGKDQSILVTG
Sbjct: 121  LNLYSEDHINLYHNKHNRLSKSRLDENSHEKLPPHIFAIAEEAYENLLSEGKDQSILVTG 180

Query: 181  ESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTV 240
            ESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTV
Sbjct: 181  ESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTV 240

Query: 241  RNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDS 300
            RNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDS
Sbjct: 241  RNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDS 300

Query: 301  ELKNLRLKSRNVKDYKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVA 360
            ELKNLRLKSRNVKDYKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVA
Sbjct: 301  ELKNLRLKSRNVKDYKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVA 360

Query: 361  IILLIGNIEFVSDRAEQASFKNDVSAICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNS 420
            IILLIGNIEFVSDRAEQASFKNDVSAICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNS
Sbjct: 361  IILLIGNIEFVSDRAEQASFKNDVSAICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNS 420

Query: 421  QQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC 480
            QQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC
Sbjct: 421  QQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC 480

Query: 481  INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLL 540
            INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLL
Sbjct: 481  INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLL 540

Query: 541  DEEAVLPKSTDESFYSKLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWXXXXXX 600
            DEEAVLPKSTDESFYSKLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGW      
Sbjct: 541  DEEAVLPKSTDESFYSKLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKD 600

Query: 601  XXXXXXXXXXXXXXXXXXXKLFQPEGEKSSSAGVEANISNQEVKKSARTSTFKTTSSRHR 660
                               KLFQPEGEKSSSAGVEANISNQEVKKSARTSTFKTTSSRHR
Sbjct: 601  PLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGVEANISNQEVKKSARTSTFKTTSSRHR 660

Query: 661  EQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
            EQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR
Sbjct: 661  EQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720

Query: 721  IAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKA 780
            IAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKA
Sbjct: 721  IAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKA 780

Query: 781  GVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYNRLVKE 840
            GVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYNRLVKE
Sbjct: 781  GVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYNRLVKE 840

Query: 841  DPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELEN 900
            DPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELEN
Sbjct: 841  DPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELEN 900

Query: 901  TQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQK 960
            TQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQK
Sbjct: 901  TQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQK 960

Query: 961  IQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRL 1020
            IQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRL
Sbjct: 961  IQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRL 1020

Query: 1021 KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENF 1080
            KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENF
Sbjct: 1021 KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENF 1080

Query: 1081 KKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQL 1140
            KKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQL
Sbjct: 1081 KKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQL 1140

Query: 1141 TEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNK 1200
            TEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNK
Sbjct: 1141 TEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNK 1200

Query: 1201 RISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXXS 1260
            RISGNSVETNI            PLDKEDIIKKYYDLQLAFTEITR             S
Sbjct: 1201 RISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLIS 1260

Query: 1261 RLRFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKL 1320
            RLRFTETRLASSSFED               DMDPSIPLDSILNEPLDNCPDKESDINKL
Sbjct: 1261 RLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKL 1320

Query: 1321 MLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKS 1380
            MLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKS
Sbjct: 1321 MLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKS 1380

Query: 1381 LEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLT 1440
            LEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLT
Sbjct: 1381 LEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLT 1440

Query: 1441 LDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLR 1500
            LDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLR
Sbjct: 1441 LDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLR 1500

Query: 1501 EHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQD 1560
            EHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQD
Sbjct: 1501 EHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQD 1560

Query: 1561 VKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETS 1620
            VKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETS
Sbjct: 1561 VKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETS 1620

Query: 1621 TNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSL 1680
            TNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSL
Sbjct: 1621 TNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSL 1680

Query: 1681 TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELV 1740
            TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELV
Sbjct: 1681 TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELV 1740

Query: 1741 KTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLS 1800
            KTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLS
Sbjct: 1741 KTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLS 1800

Query: 1801 KIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLK 1860
            KIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLK
Sbjct: 1801 KIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLK 1860

Query: 1861 YEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSN 1920
            YEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSN
Sbjct: 1861 YEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSN 1920

Query: 1921 NAQSKIFS 1928
            NAQSKIFS
Sbjct: 1921 NAQSKIFS 1928


>SCER-S28-01-000806 ORFP:YDL058W  USO1, Chr IV from 345664-351036
          Length = 1790

 Score =  150 bits (380), Expect = 3e-38
 Identities = 200/989 (20%), Positives = 416/989 (42%), Gaps = 109/989 (11%)

Query: 860  MTRTKKFNEQINKLKNDL----QEM----ESKKKFLEEKNQKTVNELENTQDLLNQEKEN 911
            +++ KK  + INK+  DL    +EM    E+ K   +EK++  VN  + T+ L    KE+
Sbjct: 852  LSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKETKSL----KED 907

Query: 912  LRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIRER 971
            +    + +  +  + E ++ Q ++L  EK+ IS+E +E     +     +  L E ++  
Sbjct: 908  IAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLVAKLTEKLKSL 967

Query: 972  EATLEKLHSKNNELIK-----------QISDLNCDISKEQSSQSLIKESKLKLENEIKRL 1020
                + + ++N  LIK           Q+S+L   I      +   +  +  +E  I++L
Sbjct: 968  ANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQL 1027

Query: 1021 KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENF 1080
            K  I+  E+  +    K  SS+++ + ++  L++    A +     V + S+L    E  
Sbjct: 1028 KKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREEL 1087

Query: 1081 KKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQL 1140
            + E AA  N LKN+      ++ K++  +K L    +  +    E  ++  E  ET+ QL
Sbjct: 1088 EAELAAYKN-LKNE------LETKLETSEKALKEVKENEEHLKEEKIQLEKEATETKQQL 1140

Query: 1141 TEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNK 1200
               ++N + +++E+ +   + K+ E++  N       + +  E  ++L+ EI+  Q  N+
Sbjct: 1141 NSLRANLESLEKEHEDLAAQLKKYEEQIANK------ERQYNEEISQLNDEITSTQQENE 1194

Query: 1201 RISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYD-LQLAFTEITRXXXXXXXXXXXXX 1259
             I   + E                 ++ ++ K   D L L   E+ +             
Sbjct: 1195 SIKKKNDELEGEVKAMKSTSE----EQSNLKKSEIDALNLQIKELKKKNETNEASLLESI 1250

Query: 1260 SRLRFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINK 1319
              +     ++     E                         S L + L    DK S   +
Sbjct: 1251 KSVESETVKIKELQDECNFKEKEV-----------------SELEDKLKASEDKNSKYLE 1293

Query: 1320 LMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVK 1379
            L  E + +K +LD +T         +     K   +      S S++ +LK  +SEER K
Sbjct: 1294 LQKESEKIKEELDAKT-------TELKIQLEKITNLSKAKEKSESELSRLKKTSSEER-K 1345

Query: 1380 SLEDKLKTMPLRDRTNLPVGDIIKNRDSISK--------YEEEIRYYKLENYKLQEILNE 1431
            + E++L+   L++   +      K R  +++        Y E+I   + E  +LQ   NE
Sbjct: 1346 NAEEQLEK--LKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQ---NE 1400

Query: 1432 SNGKLSQLTLDLRQSKSKEALLS--EQLDRLQKDLESTE-----------RQKELLSSTI 1478
            +  K  ++  D  +S+ ++  LS  E L+  Q  ++S +           R  E L S  
Sbjct: 1401 NELKAKEI--DNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIE 1458

Query: 1479 KQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWERE 1538
            +  K+  E+  + L+  +    +    LK+ EE+     + +EK K   K+ E  I   E
Sbjct: 1459 RDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIESNE 1518

Query: 1539 MERNDSDMQLQETLLEL-KRVQDVKKILSDDLAHLKERLSAVEDRSQYTD-EINRLKEEL 1596
             E   S     ET+ +  ++++  KK   +D+ +L+   S +  R   ++ +I  LK +L
Sbjct: 1519 TELKSS----METIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKL 1574

Query: 1597 NCSLKAETNL---KKEFATLKYKLETSTNDS---EAKISDLLKQLDHYTKVVEMLNNEKD 1650
                K+ + L   K+E    + K+  +  ++   ++K+ D+ ++L      ++    EK+
Sbjct: 1575 RIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKE 1634

Query: 1651 AISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQ 1710
             ++   KEL Q+ ++   + +  + +  +  +  Q  +S L++K   L+     L +  Q
Sbjct: 1635 LLTSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQ 1694

Query: 1711 KNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQA---SCNGYKDKFDDEKQKNIDLYEE 1767
              K   + +K   ++ + ++E+ ++  + +K   +     N  + + DD      DL E+
Sbjct: 1695 AWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRSEIDDLMLLVTDLDEK 1754

Query: 1768 NQTLQKLNTDLQLQLKNLHERLSDTTEKN 1796
            N   +    DL +++ +  E   +  E++
Sbjct: 1755 NAKYRSKLKDLGVEISSDEEDDEEDDEED 1783



 Score =  150 bits (380), Expect = 3e-38
 Identities = 230/1107 (20%), Positives = 477/1107 (43%), Gaps = 138/1107 (12%)

Query: 839  KEDPW--FNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVN 896
            KE P+     F  I   L   N  +R K+F +     K D+ E       L+E     V 
Sbjct: 636  KESPFPRKEYFEFITKTLGKDNYASRIKQFKKDSYFSKVDMNEDSILTPELDETGLPKVY 695

Query: 897  ELENTQDLLNQEKENLRK------NESLLNRVKTSS-ETLQKQFDDLVSEKDEISREKLE 949
                   L N+    +R       +E  +N++     E LQ+Q   L   K EI+  + E
Sbjct: 696  FSTYFIQLFNENIYRIRTALSHDPDEEPINKISFEEVEKLQRQCTKL---KGEITSLQTE 752

Query: 950  VAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKES 1009
                 E   +K+  L    +E +   + L+S ++ L +  S L  ++   + S       
Sbjct: 753  TESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKENFSILETELKNVRDSL------ 806

Query: 1010 KLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTE 1069
                 +E+ +L+DV+ +K++E ++   +  S+    +  + TLEK     +S+ +     
Sbjct: 807  -----DEMTQLRDVLETKDKENQTALLEYKSTIHKQEDSIKTLEKGLETILSQKKKAEDG 861

Query: 1070 NSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKI 1129
             + +        +E  A+    KN + E  K K  + NH+KE  +  +     ++E   I
Sbjct: 862  INKMGKDLFALSREMQAVEENCKNLQKE--KDKSNV-NHQKETKSLKEDIAAKITEIKAI 918

Query: 1130 TAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLS 1189
               L+E +IQ     +N  K KE  S    E K + Q   N LV  L + K+K L     
Sbjct: 919  NENLEEMKIQC----NNLSKEKEHISKELVEYKSRFQSHDN-LVAKLTE-KLKSLANNYK 972

Query: 1190 QEISLNQYLNKRISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITRXXX 1249
               + N+ L K +  +  E++I              +KE+   +   ++    ++ +   
Sbjct: 973  DMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKK--- 1029

Query: 1250 XXXXXXXXXXSRLRFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDN 1309
                      S L  T+  + S S                    D      S+L E L+ 
Sbjct: 1030 --------TISDLEQTKEEIISKS----------------DSSKDEYESQISLLKEKLET 1065

Query: 1310 CPD-KESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYK 1368
                 + ++NK+  E+   + +L+ E  A+ + +N +            E+ L +S+   
Sbjct: 1066 ATTANDENVNKIS-ELTKTREELEAELAAYKNLKNEL------------ETKLETSEKAL 1112

Query: 1369 LKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEI 1428
             + + +EE +K  E+K++       T   +  +  N +S+ K  E++   +L+ Y+ ++I
Sbjct: 1113 KEVKENEEHLK--EEKIQLEKEATETKQQLNSLRANLESLEKEHEDLA-AQLKKYE-EQI 1168

Query: 1429 LNES---NGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLE----STERQKELLSSTIKQQ 1481
             N+    N ++SQL  ++  ++ +   + ++ D L+ +++    ++E Q  L  S I   
Sbjct: 1169 ANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDAL 1228

Query: 1482 KQQFENCMDDLQGNELRLREHIHA-------LKQAEEDV----KNMASIIEKLK-TQNKQ 1529
              Q +      + NE  L E I +       +K+ +++     K ++ + +KLK +++K 
Sbjct: 1229 NLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN 1288

Query: 1530 KEKLIWEREME--RNDSDMQLQETLLELKRVQDVKKI---LSDDLAHLKERLSAVEDRSQ 1584
             + L  ++E E  + + D +  E  ++L+++ ++ K       +L+ LK+  S  E+R  
Sbjct: 1289 SKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSS--EERKN 1346

Query: 1585 YTDEINRLKEEL---NCSLKAETNLKKE-FATLKYKLETSTNDSEAKISDLLKQLDHYTK 1640
              +++ +LK E+   N + + E  L  E  +T+  +     N  E ++  L  + +   K
Sbjct: 1347 AEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAK 1406

Query: 1641 VVEMLNNEKDAISLAEKELYQK----YEALNTECESLKGKIVSLTKIKQELESDLNQKTD 1696
             ++   +E + +SL+  EL ++     ++L  E  S K KI    +    +E D  +  +
Sbjct: 1407 EIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLE 1466

Query: 1697 ALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDD 1756
            +L+     L ++ +   ++ E +K LEE    +  +  ++ E++K L+++          
Sbjct: 1467 SLK---EQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTI--------- 1514

Query: 1757 EKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTT-EKNAWLSKIHELE-NMVSLETD 1814
             +    +L    +T++K +  L+   K+  E + +   EK+  +S+I+E E ++  L++ 
Sbjct: 1515 -ESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSK 1573

Query: 1815 LKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQ 1874
            L+  E K    LE   +EL   N+Q+        K R   EE T+  ++++ D+E+ +  
Sbjct: 1574 LRI-EAKSGSELETVKQEL--NNAQE--------KIRINAEENTV-LKSKLEDIERELKD 1621

Query: 1875 QELEMKKSIRDNSSYRDKVQEMAQEIE 1901
            ++ E+K +  +      +++E+ QE++
Sbjct: 1622 KQAEIKSNQEEKELLTSRLKELEQELD 1648



 Score = 96.7 bits (239), Expect = 6e-22
 Identities = 110/487 (22%), Positives = 226/487 (46%), Gaps = 50/487 (10%)

Query: 746  KLKASTKQNCEFLLTSLQLDTKVYK----IGNTKLFFKAGVLADLEKQKDVKLNNIMIKL 801
            KLKAS  +N ++L   LQ +++  K       T+L  +   + +L K K+ K  + + +L
Sbjct: 1280 KLKASEDKNSKYL--ELQKESEKIKEELDAKTTELKIQLEKITNLSKAKE-KSESELSRL 1336

Query: 802  TATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYNRLVKEDPWFNLFIRIKPLLTSSNDMT 861
              T      RK     L+KLK      N  ++ N+  +++            L +    T
Sbjct: 1337 KKT--SSEERKNAEEQLEKLK------NEIQIKNQAFEKER----------KLLNEGSST 1378

Query: 862  RTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNR 921
             T++++E+IN L+++L         L+ +N+    E++NT+  L  EK +L  N+ LL  
Sbjct: 1379 ITQEYSEKINTLEDELIR-------LQNENELKAKEIDNTRSEL--EKVSL-SNDELLEE 1428

Query: 922  VKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSK 981
             + + ++LQ   D+++S KD+I+R   ++     +  + ++ L+E +R  + +  K+   
Sbjct: 1429 KQNTIKSLQ---DEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVE-- 1483

Query: 982  NNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSS 1041
              E +K++ +   + SKE++     KE   KLE+ I+  +  + S  E I+  ++KL  S
Sbjct: 1484 --EGLKKLEE---ESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQS 1538

Query: 1042 EEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKM 1101
            ++  +  +  L+   +  +SR+     +  +L+SK     + +A   ++L+  + EL   
Sbjct: 1539 KKSAEEDIKNLQHEKSDLISRINESEKDIEELKSK----LRIEAKSGSELETVKQELNNA 1594

Query: 1102 KEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRET 1161
            +EKI  + +E      + +D   E     AE+K  + +     S  +++++E  + Q++ 
Sbjct: 1595 QEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKA 1654

Query: 1162 KEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNIXXXXXXXXXX 1221
            ++ E+++R + V      K +  E  +  E   N  +NK  +    E  +          
Sbjct: 1655 QKSEEERR-AEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRDEDTVKKTTDSQRQE 1713

Query: 1222 XXPLDKE 1228
               L KE
Sbjct: 1714 IEKLAKE 1720



 Score = 92.0 bits (227), Expect = 2e-20
 Identities = 136/603 (22%), Positives = 269/603 (44%), Gaps = 68/603 (11%)

Query: 1363 SSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPV------------GDIIKNRDSISK 1410
            +S I + K ++   +V   ED + T P  D T LP              +I + R ++S 
Sbjct: 659  ASRIKQFKKDSYFSKVDMNEDSILT-PELDETGLPKVYFSTYFIQLFNENIYRIRTALSH 717

Query: 1411 YEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQ 1470
              +E    K+   +++++  +      ++T    +++S    L+E+L  L  + +  + +
Sbjct: 718  DPDEEPINKISFEEVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEK 777

Query: 1471 KELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAE-EDVKNMASIIEKLKTQNKQ 1529
             ++L+S+    K+ F     +L+     L E        E +D +N  +++E   T +KQ
Sbjct: 778  YQILNSSHSSLKENFSILETELKNVRDSLDEMTQLRDVLETKDKENQTALLEYKSTIHKQ 837

Query: 1530 KEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEI 1589
            ++ +   + +E+      L+  L + K+ +D    +  DL  L   + AVE+  +    +
Sbjct: 838  EDSI---KTLEKG-----LETILSQKKKAEDGINKMGKDLFALSREMQAVEENCK---NL 886

Query: 1590 NRLKEELNCSLKAETNLKKEFATLKYKLETSTNDS--EAKI--SDLLKQLDHYTK-VVEM 1644
             + K++ N + + ET   KE    K     + N++  E KI  ++L K+ +H +K +VE 
Sbjct: 887  QKEKDKSNVNHQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEY 946

Query: 1645 LNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAA 1704
             +  +   +L  K L +K ++L    + ++ +  SL K  +E +++ + +   LQ    +
Sbjct: 947  KSRFQSHDNLVAK-LTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDS 1005

Query: 1705 LSSSTQ----KNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGY-------KDK 1753
            +S   +    +   I + I+ L++T+   +EQ     E++    +S + Y       K+K
Sbjct: 1006 MSQEKENFQIERGSIEKNIEQLKKTIS-DLEQTKE--EIISKSDSSKDEYESQISLLKEK 1062

Query: 1754 FDDEKQKNIDLYEENQTLQKLNTDLQLQL---KNLHERLS---DTTEKNAWLSKIHELEN 1807
             +     N +   +   L K   +L+ +L   KNL   L    +T+EK         L+ 
Sbjct: 1063 LETATTANDENVNKISELTKTREELEAELAAYKNLKNELETKLETSEK--------ALKE 1114

Query: 1808 MVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISD 1867
            +   E  LK E+++  K    A E  Q  NS + + +E   K   +      KYE QI++
Sbjct: 1115 VKENEEHLKEEKIQLEKE---ATETKQQLNSLRAN-LESLEKEHEDLAAQLKKYEEQIAN 1170

Query: 1868 LEKY----ISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKS-RYESTMIGSKNIDSNNA 1922
             E+     ISQ   E+  + ++N S + K  E+  E++  KS   E + +    ID+ N 
Sbjct: 1171 KERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNL 1230

Query: 1923 QSK 1925
            Q K
Sbjct: 1231 QIK 1233



 Score = 87.0 bits (214), Expect = 5e-19
 Identities = 103/461 (22%), Positives = 208/461 (45%), Gaps = 63/461 (13%)

Query: 727  FQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLADL 786
            F++ R L  E S+T T     K +T ++ E +    + + K  +I NT+        ++L
Sbjct: 1365 FEKERKLLNEGSSTITQEYSEKINTLED-ELIRLQNENELKAKEIDNTR--------SEL 1415

Query: 787  EKQKDVKLNN--IMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYNRLVKEDPWF 844
            EK   V L+N  ++ +   TI+  +++ EI  +  K+ +     N  +L +  ++ D   
Sbjct: 1416 EK---VSLSNDELLEEKQNTIK--SLQDEILSYKDKITR-----NDEKLLS--IERD--- 1460

Query: 845  NLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENT--- 901
                  + L +    +   ++   ++ +    L+E  SK+K   EK+++ + +LE+T   
Sbjct: 1461 ----NKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIES 1516

Query: 902  -QDLLNQEKENLRKNESLLNRVKTSSE----TLQKQFDDLVS-----EKD-EISREKLEV 950
             +  L    E +RK++  L + K S+E     LQ +  DL+S     EKD E  + KL +
Sbjct: 1517 NETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRI 1576

Query: 951  ----AQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLI 1006
                   LE   Q++   QE IR        L SK  ++ +++ D   +I   Q  + L+
Sbjct: 1577 EAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQEEKELL 1636

Query: 1007 KESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSL 1066
                 +LE E+   +      EEE ++   K    +  LD K + LE             
Sbjct: 1637 TSRLKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLE------------- 1683

Query: 1067 VTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEH 1126
             T+ +DL +K + +K+++  +     ++  E+ K+ +++DN K E +   +  +D  SE 
Sbjct: 1684 -TKYNDLVNKEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDR-SEI 1741

Query: 1127 GKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQK 1167
              +   + +   +  +Y+S  + +  E S+ + + +E +++
Sbjct: 1742 DDLMLLVTDLDEKNAKYRSKLKDLGVEISSDEEDDEEDDEE 1782



 Score = 85.9 bits (211), Expect = 1e-18
 Identities = 114/507 (22%), Positives = 225/507 (44%), Gaps = 67/507 (13%)

Query: 746  KLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLADLEKQKDVKLNNIMIKLTAT- 804
            K    TKQ    L  +L+   K ++    +L      +A+ E+Q + +++ +  ++T+T 
Sbjct: 1131 KEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQ 1190

Query: 805  ------------IRGYTVRKEITYHLQK-LKKTRVIGNTFRLYNRLVKEDPWFNLFIRIK 851
                        + G     + T   Q  LKK+ +  +   L  + +K+    N    ++
Sbjct: 1191 QENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEI--DALNLQIKELKKKNETNEASLLE 1248

Query: 852  PLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKE- 910
             + +  ++  + K+  ++ N  + ++ E+E K K  E+KN K + EL+   + + +E + 
Sbjct: 1249 SIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKNSKYL-ELQKESEKIKEELDA 1307

Query: 911  -------------NL----RKNESLLNRV-KTSSETLQKQFDDLVSEKDE--ISREKLEV 950
                         NL     K+ES L+R+ KTSSE  +   + L   K+E  I  +  E 
Sbjct: 1308 KTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEK 1367

Query: 951  AQNL--EEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKE 1008
             + L  E +    Q   E I   E  L +L ++N    K+I +   ++ K   S   + E
Sbjct: 1368 ERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLE 1427

Query: 1009 SKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSR------ 1062
             K   +N IK L+D I S +++I   ++KL S E D    L +L++    A         
Sbjct: 1428 EK---QNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQLRAAQESKAKVEE 1484

Query: 1063 -LQSLVTENSDLRSKNENFKKEKAALNNQLKNKESEL-------LKMKEKIDNHKK---- 1110
             L+ L  E+S  +++ E  K+    L + +++ E+EL        K  EK++  KK    
Sbjct: 1485 GLKKLEEESSKEKAELEKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEE 1544

Query: 1111 ELATFSKQRDDAVSEHGKITAELKETRIQL---TEYKSNYQKIKEEYSNFQRETK---EQ 1164
            ++     ++ D +S   +   +++E + +L    +  S  + +K+E +N Q + +   E+
Sbjct: 1545 DIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEE 1604

Query: 1165 EQKKRNSLVESLNDSKIKELEARLSQE 1191
                ++ L +   + K K+ E + +QE
Sbjct: 1605 NTVLKSKLEDIERELKDKQAEIKSNQE 1631


>MGEN-G37-01-000221 MG218  cytadherence accessory protein (hmw2)
          Length = 1805

 Score =  125 bits (315), Expect = 1e-30
 Identities = 238/1173 (20%), Positives = 491/1173 (41%), Gaps = 210/1173 (17%)

Query: 867  NEQINKLKNDLQEMESKKKFLEEKNQKTVNE-LENTQDLLNQEKENLRKN---ESLLNRV 922
            NE   K  + L ++E++ K L+ K  +  NE    +++LLNQE+E   K    ++LL + 
Sbjct: 368  NEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQA 427

Query: 923  KTSSETLQKQFDDLVSEKD----------EISREKLEVAQNLEEAHQKIQG-----LQET 967
                E  Q++   L+ +K           E ++++L+  +NL +  +K+       L+E 
Sbjct: 428  SLEYEH-QRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEK 486

Query: 968  IREREATLEKLH--------SKNNELI---KQISDLNCDISKE-QSSQSLIKESKLKLEN 1015
            + +    LE+L+         K NEL+   KQ+     D   E ++ Q  + E+K  LE 
Sbjct: 487  VAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQQELFEAKHALER 546

Query: 1016 EIKRLKDV---INSKEEEIKS-FNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENS 1071
               +L+D    +N+K ++I + F+   +   +  D +L+          +  ++L  E  
Sbjct: 547  SFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELML--------QNEYENLQQEKQ 598

Query: 1072 DLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITA 1131
             L  +   F++  A L+N+L+ K  ELL+ KE +D   K   +F ++R     EH ++ A
Sbjct: 599  KLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTK---SFEQERLINQREHKELVA 655

Query: 1132 ELKETR----IQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLND-SKIKELEA 1186
             +++ +     +L ++        +  +  +   K +E++   +  + LND +  + ++A
Sbjct: 656  SVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQA 715

Query: 1187 RLSQEISLNQYLN-KRISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEIT 1245
             L+Q   LNQ LN +R    + +  I                 D +KK  + +L+  +  
Sbjct: 716  DLAQ---LNQSLNQERSELQNAKQRIADF------------HNDSLKKLNEYELSLQK-- 758

Query: 1246 RXXXXXXXXXXXXXSRLRFTETRLASSS---------FEDXXXXXXXXXXXXXXXDMDPS 1296
                           RL+  +T  A+           FE                    +
Sbjct: 759  ---------------RLQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQT 803

Query: 1297 IPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQ 1356
            + +D+I         DK   +N    E+D    +L+     H   + ++    +  ++ Q
Sbjct: 804  MEVDAI----KQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVKETQ 859

Query: 1357 GESSLSSSDIYKLKFEASE----------------ERVKSLEDKLKTMPLRDRTNLPV-- 1398
                L  S + + + E +E                +++  L  K ++   +  T L +  
Sbjct: 860  KLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQESEQTQKETELKIAF 919

Query: 1399 GDIIKNRDSIS-KYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQL 1457
             D+ K+      + ++E R  + +  +L ++  ++N    Q+ L+L      +AL +++ 
Sbjct: 920  SDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNN----QVKLEL--DNRFQALQNQKQ 973

Query: 1458 DRLQKDLESTERQKEL---------LSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQ 1508
            D +Q  LE    Q +L          + ++ +Q++Q    +      EL+ R    ALK 
Sbjct: 974  DTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFH-YELKKRNQFLALKG 1032

Query: 1509 AEEDVKNMASIIEKLKTQNKQKEKLIW---EREMERNDSDMQLQETLLELKRVQDVKKIL 1565
                      +  K + Q ++ +++ W   + E E  D D   +  L EL++++      
Sbjct: 1033 KR--------LFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQS 1084

Query: 1566 SDDLAHLKERLS---AVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTN 1622
            + +L   +E+L+      ++ Q+  +INR  ++LN  +       ++F   +   +  +N
Sbjct: 1085 NVELERKREKLATDFTNLNKVQHNTQINR--DQLNSQI-------RQFLLERKNFQRFSN 1135

Query: 1623 DSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTK 1682
            ++ AK + L+K+L  +   +++   +K+A+++ + E  ++ E    E +    ++     
Sbjct: 1136 EANAKKAFLIKRLRSFASNLKL---QKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKF 1192

Query: 1683 IKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL----------QLQMEQ 1732
             KQ  + +  ++  A++     LS   +   +   ++K L +T           Q Q++Q
Sbjct: 1193 EKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQ 1252

Query: 1733 NSRNGELVKTLQASCNGYKDKFDDEKQKNI---------DL-YEENQTL--QKLNTDLQL 1780
               N   +  L+ +    KD+  D+K ++I         DL +E+ Q L  Q++  D   
Sbjct: 1253 KYTN---LLDLKENLERTKDQL-DKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNR 1308

Query: 1781 QLK----NLHERLSDTTEKNAWL-SKIHELENMVSLETD---LKYEEMKKNK-SLERAVE 1831
             LK    NLH   ++T  K A L  +I   E      TD     ++E+KK +  L++ + 
Sbjct: 1309 LLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLV 1368

Query: 1832 ELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRD 1891
            EL+T+ ++  +     ++ R EFE   LK                LE++K+++  ++  +
Sbjct: 1369 ELETRKTKLNNDFAKFSRQREEFENQRLKL---------------LELQKTLQTQTNSNN 1413

Query: 1892 KVQEMAQEIE-FWKSRYESTMIGSKNIDSNNAQ 1923
               +  QEIE  +K   E      K  D N ++
Sbjct: 1414 FKTKAIQEIENSYKRGMEELNFQKKEFDKNKSR 1446



 Score =  116 bits (291), Expect = 6e-28
 Identities = 215/1117 (19%), Positives = 445/1117 (39%), Gaps = 166/1117 (14%)

Query: 871  NKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESL------LNRVKT 924
            N+ K D+ ++E++   L ++ +   +EL+N + L NQ ++N   ++ +      LNR+  
Sbjct: 30   NRSKTDVDKIENQ---LLKEIKSLEDELKNLKGLKNQAEDNPELDKKINHLEVDLNRLVN 86

Query: 925  SSETLQKQFDDLVSE-----------KDEISREKLEVAQNLEEAHQKIQGLQETIREREA 973
              +  Q Q + +V +           K+E++R + E A  L   +  +   Q     +  
Sbjct: 87   EYKNFQFQKNHMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANFQANYHNKLN 146

Query: 974  TLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKS 1033
               +L    N+ I +++       K   +Q+LI  +   L+N      ++   K+  + +
Sbjct: 147  DFHRLIENQNQTINRLNQ------KINGNQNLIDNNVALLQNP-----NITVEKKNYLLN 195

Query: 1034 FNDKLSSSEEDLDI--KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQL 1091
              D+L +  + L+   +L+++E       +  + LV+ +++L++  EN  + +    +Q 
Sbjct: 196  VIDQLYNELDQLENQKRLLSIEYE-----NTYRELVSADNELQNVYENIDQNQIQFKHQY 250

Query: 1092 KNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIK 1151
            +    EL +++ KI   K+EL          V +   +  ++ +    +    +    + 
Sbjct: 251  QTYRDELSQLERKIQLTKQEL----------VDKESALRVKIDDADFYINARLAELDDVA 300

Query: 1152 EEYSNFQRETKEQEQKKRNSLV------ESLNDSKIKELEARLSQEISLNQYLNKR-ISG 1204
            ++ S     TK+  Q   + LV      + LN  K      R S  I +N+   +  +  
Sbjct: 301  KQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQENELFA 360

Query: 1205 NSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXXSRL-- 1262
              +E                L+ E     Y  LQ    E                  L  
Sbjct: 361  KHLEHQQNEFEQKQSDSLLKLETE-----YKALQHKINEFKNESATKSEELLNQERELFE 415

Query: 1263 --RFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKL 1320
              R  +T L  +S E                             E      DK++++ + 
Sbjct: 416  KRREIDTLLTQASLEYEHQ------------------------RESSQLLKDKQNEVKQH 451

Query: 1321 MLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKS 1380
               ++Y K++LD E       +   S    + ++   +      ++Y +K +  +++   
Sbjct: 452  FQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENE 511

Query: 1381 L---EDKLKTMPLRDRTNLPVGDIIKNRDSI-SKYEEEIRYYKLE------NYKLQEILN 1430
            L   E +LK         L      K ++   +K+  E  + KLE      N K Q+I N
Sbjct: 512  LLFFEKQLKQHQADFENELEA----KQQELFEAKHALERSFIKLEDKEKDLNTKAQQIAN 567

Query: 1431 ESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLEST-------ERQKELLSSTIKQQKQ 1483
            E     SQL  D  +S   E +L  + + LQ++ +         ER   +LS+ ++Q+++
Sbjct: 568  E----FSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKRE 623

Query: 1484 ---QFENCMDDL-----QGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIW 1535
               Q +  +D L     Q   +  REH   +   E+  + +   ++     +    K + 
Sbjct: 624  ELLQQKETLDQLTKSFEQERLINQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLA 683

Query: 1536 EREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEE 1595
            EREM     + +++ T  +L    +  +++  DLA L + L+  ++RS+  +   R+ + 
Sbjct: 684  EREMAIKFKEKEIEATEKQLLNDVNNAEVIQADLAQLNQSLN--QERSELQNAKQRIADF 741

Query: 1596 LNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDA-ISL 1654
             N SLK     + E +  K   E  T ++  K      Q  ++   ++ LN EK A ++L
Sbjct: 742  HNDSLKKLN--EYELSLQKRLQELQTLEANQKQHSYQNQA-YFEGELDKLNREKQAFLNL 798

Query: 1655 AEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKE 1714
             +K+          E +++K ++    +     +++L++KT   +++NA L+    + K 
Sbjct: 799  RKKQ--------TMEVDAIKQRLSDKHQALNMQQAELDRKTH--ELNNAFLNHDADQ-KS 847

Query: 1715 ITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYE-----ENQ 1769
            + +++  ++ET +L   + S   E  +    +  G+K  + ++  +   +YE     E++
Sbjct: 848  LQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQESE 907

Query: 1770 TLQKLNTDLQLQLKNLH-----------ERLSDTTEKNAWLSKIHELENMVSLETDLKYE 1818
              QK  T+L++   +L            +       K   L K+ E  N V LE D +++
Sbjct: 908  QTQK-ETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQ 966

Query: 1819 EMKKNK--------SLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEK 1870
             ++  K         LER   +L   N +QT   +       + E+ T K +A   +L+K
Sbjct: 967  ALQNQKQDTVQAQLELEREQHQL---NLEQTAFNQANESLLKQREQLTKKIQAFHYELKK 1023

Query: 1871 YISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRY 1907
                  L+ K+        + K QE+    + ++  Y
Sbjct: 1024 RNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEY 1060



 Score =  104 bits (260), Expect = 2e-24
 Identities = 251/1253 (20%), Positives = 513/1253 (40%), Gaps = 179/1253 (14%)

Query: 767  KVYKIGNTKLFFKAGVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRV 826
            KV ++ N   F+K   L  L+++    LN+    L           +  YH +     R+
Sbjct: 101  KVSELDNLTRFYK-NELTRLQQENADFLNSKYANLA--------NFQANYHNKLNDFHRL 151

Query: 827  IGNTFRLYNRL-VKEDPWFNLFIRIKPLLTSSNDMTRTKKFN-EQINKLKNDLQEMESKK 884
            I N  +  NRL  K +   NL      LL + N     K +    I++L N+L ++E++K
Sbjct: 152  IENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVIDQLYNELDQLENQK 211

Query: 885  KFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEIS 944
            + L  + + T  EL +  + L    EN+ +N+    + K   +T +   D+L   + +I 
Sbjct: 212  RLLSIEYENTYRELVSADNELQNVYENIDQNQI---QFKHQYQTYR---DELSQLERKIQ 265

Query: 945  REKLEVAQNLEEAHQKIQGLQETIREREATLE---KLHSKNNELIKQ----ISDLNCDIS 997
              K E+         KI      I  R A L+   K  S  + + KQ    + D    ++
Sbjct: 266  LTKQELVDKESALRVKIDDADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKLVALN 325

Query: 998  KEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCN 1057
            KE+   +  KE+   L      L D IN  ++E + F   L   + + + K         
Sbjct: 326  KEKDRLNTQKEAFFNLRQ--SALID-INKLQQENELFAKHLEHQQNEFEQK--------- 373

Query: 1058 IAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELA-TFS 1116
                 L  L TE   L+ K   FK E A  + +L N+E EL + + +ID    + +  + 
Sbjct: 374  -QSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASLEYE 432

Query: 1117 KQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSL---- 1172
             QR+ +                QL + K N  ++K+ + N +   KE + K+RN L    
Sbjct: 433  HQRESS----------------QLLKDKQN--EVKQHFQNLEYAKKELD-KERNLLDQQK 473

Query: 1173 -VESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNIXXXXXXXXXXXXPLDKE--- 1228
             V+S    ++KE  A+  +E+    YL K+   +  E  +              + E   
Sbjct: 474  KVDSEAIFQLKEKVAQERKELE-ELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEA 532

Query: 1229 ---DIIKKYYDLQLAFTEI---TRXXXXXXXXXXXXXSRLRFTETRLA------SSSFED 1276
               ++ +  + L+ +F ++    +             S+L+  +++ A       + +E+
Sbjct: 533  KQQELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYEN 592

Query: 1277 XXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETR 1336
                           + + ++  + +  +  +    KE+        +D L +  + E  
Sbjct: 593  LQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKET--------LDQLTKSFEQERL 644

Query: 1337 AHYDAENAISALHSKFRKIQG-------ESSLSSSDIYKLKFEASEERVKSLEDKLKTMP 1389
             +      + A   K ++I G       ++SL++S     +  A + + K +E   K + 
Sbjct: 645  INQREHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQL- 703

Query: 1390 LRDRTNLPV--GDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQ-- 1445
            L D  N  V   D+ +   S+++   E++  K    ++ +  N+S  KL++  L L++  
Sbjct: 704  LNDVNNAEVIQADLAQLNQSLNQERSELQNAK---QRIADFHNDSLKKLNEYELSLQKRL 760

Query: 1446 -------------SKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDL 1492
                         S   +A    +LD+L ++ ++    ++  +  +   KQ+  +    L
Sbjct: 761  QELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQAL 820

Query: 1493 QGNELRLREHIHALKQA--EEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQE 1550
               +  L    H L  A    D  +  S+ ++L T  K+ +KLI   ++ER+        
Sbjct: 821  NMQQAELDRKTHELNNAFLNHDA-DQKSLQDQLATV-KETQKLI---DLERS-------- 867

Query: 1551 TLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAE-----TN 1605
             LLE +R        ++++A  K   S    + Q   E+ + +E      + E     ++
Sbjct: 868  ALLEKQRE------FAENVAGFKRHWSNKTSQLQKIYELTKKQESEQTQKETELKIAFSD 921

Query: 1606 LKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKV-------VEMLNNEKDAISLAEKE 1658
            L+K++   + + +      EAK  +L K  +   +V        + L N+K     A+ E
Sbjct: 922  LQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLE 981

Query: 1659 LYQKYEALNTE-------CESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQ- 1710
            L ++   LN E        ESL  +   LTK  Q    +L ++   L +    L +  Q 
Sbjct: 982  LEREQHQLNLEQTAFNQANESLLKQREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQD 1041

Query: 1711 ---KNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQK------N 1761
               K++EI  + K  E+      E   R  E ++ ++ S +    + + +++K      N
Sbjct: 1042 QQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNVELERKREKLATDFTN 1101

Query: 1762 IDLYEENQTLQK--LNTDLQ---LQLKNLHERLSDTTEKNAWLSK-IHELENMVSLETD- 1814
            ++  + N  + +  LN+ ++   L+ KN     ++   K A+L K +    + + L+ + 
Sbjct: 1102 LNKVQHNTQINRDQLNSQIRQFLLERKNFQRFSNEANAKKAFLIKRLRSFASNLKLQKEA 1161

Query: 1815 LKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKN---RSEFEEATLKYEAQ-ISDLEK 1870
            L  ++++ +K  E+  +ELQ + + Q +  +   +N     + +   +K + + +SD +K
Sbjct: 1162 LAIQKLEFDKRDEQQKKELQ-QATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKK 1220

Query: 1871 YISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSNNAQ 1923
             ++Q+ +E+K   +   + ++K +   Q+++    +Y + +   +N++    Q
Sbjct: 1221 ALNQKLVELKNLSQTYLANKNKAEYSQQQLQ---QKYTNLLDLKENLERTKDQ 1270



 Score =  102 bits (253), Expect = 1e-23
 Identities = 187/1024 (18%), Positives = 421/1024 (41%), Gaps = 124/1024 (12%)

Query: 963  GLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKD 1022
            G  ++  E+  +   +    N+L+K+I  L  ++   +  ++  +++  +L+ +I  L+ 
Sbjct: 21   GYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKGLKNQAEDNP-ELDKKINHLEV 79

Query: 1023 VINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSD-LRSKNENFK 1081
             +N    E K+F  + +   +    K+  L+       + L  L  EN+D L SK  N  
Sbjct: 80   DLNRLVNEYKNFQFQKNHMVD----KVSELDNLTRFYKNELTRLQQENADFLNSKYANLA 135

Query: 1082 KEKAALNNQL-------KNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELK 1134
              +A  +N+L       +N+   + ++ +KI+ ++  +       + A+ ++  IT E K
Sbjct: 136  NFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLI-----DNNVALLQNPNITVEKK 190

Query: 1135 ETRI--------QLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEA 1186
               +        +L + ++  + +  EY N  RE    + + +N + E+++ ++I+    
Sbjct: 191  NYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQN-VYENIDQNQIQ---- 245

Query: 1187 RLSQEISLNQYLNKRISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITR 1246
                    +QY   R   + +E  I             L K++++ K   L++   +   
Sbjct: 246  ------FKHQYQTYRDELSQLERKIQ------------LTKQELVDKESALRVKIDD--- 284

Query: 1247 XXXXXXXXXXXXXSRLRFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEP 1306
                         +RL   +      SF+D                ++      +   E 
Sbjct: 285  -------ADFYINARLAELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEA 337

Query: 1307 LDNCPDKES-DINKLMLEVDYLKRQLDIETRAHYDA--------ENAISALHSKFRKIQG 1357
              N       DINKL  E +   + L+ +               E    AL  K  + + 
Sbjct: 338  FFNLRQSALIDINKLQQENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKN 397

Query: 1358 ESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDS-ISKYEEEIR 1416
            ES+  S ++   + E  E+R + ++  L    L          ++K++ + + ++ + + 
Sbjct: 398  ESATKSEELLNQERELFEKR-REIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLE 456

Query: 1417 YYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELL-- 1474
            Y K E  K + +L++     S+    L++  ++E    E+L  ++K  +  +++ ELL  
Sbjct: 457  YAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQERKELEELYLVKKQKQD-QKENELLFF 515

Query: 1475 SSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLI 1534
               +KQ +  FEN   +L+  +  L E  HAL+      ++   + +K K  N + +++ 
Sbjct: 516  EKQLKQHQADFEN---ELEAKQQELFEAKHALE------RSFIKLEDKEKDLNTKAQQIA 566

Query: 1535 WEREMERNDSDMQLQETLL---ELKRVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEIN 1590
             E    + D        L+   E + +Q  K+ L  +  + +   + + +R  Q  +E+ 
Sbjct: 567  NEFSQLKTDKSKSADFELMLQNEYENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELL 626

Query: 1591 RLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKD 1650
            + KE L+  L      ++     ++K   ++ + + +I  L K+L  +++    LN  K+
Sbjct: 627  QQKETLD-QLTKSFEQERLINQREHKELVASVEKQKEI--LGKKLQDFSQT--SLNASKN 681

Query: 1651 AISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQ 1710
               LAE+E+  K++    E E+ + ++++     + +++DL Q   +L    + L ++ Q
Sbjct: 682  ---LAEREMAIKFK--EKEIEATEKQLLNDVNNAEVIQADLAQLNQSLNQERSELQNAKQ 736

Query: 1711 K----NKEITEKIKYLEETLQLQMEQ----NSRNGELVKTLQASCNGYKDKFDDEKQKNI 1762
            +    + +  +K+   E +LQ ++++     +   +     QA   G  DK + EKQ  +
Sbjct: 737  RIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHSYQNQAYFEGELDKLNREKQAFL 796

Query: 1763 DLYEEN--------QTLQKLNTDLQLQLKNLHERL-----------SDTTEKNAWLSKIH 1803
            +L ++         Q L   +  L +Q   L  +            +D       L+ + 
Sbjct: 797  NLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHELNNAFLNHDADQKSLQDQLATVK 856

Query: 1804 ELENMVSLETDLKYEEMKK-NKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYE 1862
            E + ++ LE     E+ ++  +++         K SQ   + EL  K  SE  +   + +
Sbjct: 857  ETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQLQKIYELTKKQESEQTQKETELK 916

Query: 1863 AQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSNNA 1922
               SDL+K     EL+  +  R   + + ++ ++A++    K   ++     +N   +  
Sbjct: 917  IAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKNNQVKLELDNRFQALQNQKQDTV 976

Query: 1923 QSKI 1926
            Q+++
Sbjct: 977  QAQL 980



 Score = 92.8 bits (229), Expect = 9e-21
 Identities = 201/1159 (17%), Positives = 438/1159 (37%), Gaps = 178/1159 (15%)

Query: 869  QINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRK------NESLLNRV 922
            +   L+ + Q++  ++ + E       N L+  ++ L Q+KE L +       E L+N+ 
Sbjct: 589  EYENLQQEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQR 648

Query: 923  --KTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHS 980
              K    +++KQ + L  +  + S+  L  ++NL E    I+  ++ I   E  L  L+ 
Sbjct: 649  EHKELVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQL--LND 706

Query: 981  KNNELIKQ--ISDLNCDISKEQS---------------SQSLIKESKLKLENEIKRLKDV 1023
             NN  + Q  ++ LN  +++E+S               S   + E +L L+  ++ L+ +
Sbjct: 707  VNNAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTL 766

Query: 1024 -INSKEEEIKS---FNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNEN 1079
              N K+   ++   F  +L     +    L   +K      +  Q L  ++  L  +   
Sbjct: 767  EANQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAE 826

Query: 1080 FKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQ 1139
              ++   LNN   N +++   +++++   K+       +R   + +  +    +   +  
Sbjct: 827  LDRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRH 886

Query: 1140 LTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLN 1199
             +   S  QKI E     + E  ++E + + +  +   D ++   E +  QE    +   
Sbjct: 887  WSNKTSQLQKIYELTKKQESEQTQKETELKIAFSDLQKDYQV--FELQKDQEFRQIEAKQ 944

Query: 1200 KRISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXX 1259
            + +   + + N                K+D ++   +L+    ++               
Sbjct: 945  RELDKLAEKNNQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLL 1004

Query: 1260 SRLRFTETRLASSSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINK 1319
             +      ++ +  +E                                     KE D  +
Sbjct: 1005 KQREQLTKKIQAFHYELKKRNQFLALKGKRLFA--------------------KEQDQQR 1044

Query: 1320 LMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVK 1379
               E+++  +Q + E   + D + A      +  KI+   SLS S++     E   +R K
Sbjct: 1045 KDQEINWRFKQFEKE---YTDFDEAKKRELEELEKIR--RSLSQSNV-----ELERKREK 1094

Query: 1380 SLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQL 1439
               D      ++  T +       NRD ++    +IR + LE    Q   NE+N K + L
Sbjct: 1095 LATDFTNLNKVQHNTQI-------NRDQLNS---QIRQFLLERKNFQRFSNEANAKKAFL 1144

Query: 1440 TLDLRQSKSKEALLSEQL--DRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNEL 1497
               LR   S   L  E L   +L+ D    +++KEL  +T++ ++ +FE    D++    
Sbjct: 1145 IKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQ 1204

Query: 1498 ---------RLREHIHALKQAEEDVKNMASI----------------------------I 1520
                     +L +   AL Q   ++KN++                              +
Sbjct: 1205 LVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENL 1264

Query: 1521 EKLKTQNKQKEKLIWEREME-RNDSDMQLQETLLELKRVQDVKKILSDD------LAHLK 1573
            E+ K Q  +K + I+ R  +  ND   + ++ L   + V D  ++L ++      L++  
Sbjct: 1265 ERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSNET 1324

Query: 1574 ERLSAV---------EDRSQYTD---------------------EINRLKEELNCSLKAE 1603
            ER  AV         + R Q TD                     E+   K +LN      
Sbjct: 1325 ERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKF 1384

Query: 1604 TNLKKEFATLKYKL-------ETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAE 1656
            +  ++EF   + KL       +T TN +  K   + +  + Y + +E LN +K      +
Sbjct: 1385 SRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNK 1444

Query: 1657 KELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEIT 1716
              LY+ +  +  E E  + ++  + K  Q   + L  + + L I    +    ++ K   
Sbjct: 1445 SRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFK 1504

Query: 1717 EKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNT 1776
            +K+   ++ +    +Q     EL+   +       ++      K+  L ++ +T+++   
Sbjct: 1505 DKV---DQDIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIETIKRQLH 1561

Query: 1777 DLQLQLKNLHERLSDTTEKNAWLSKIHELENMV--SLETDLK------YEEMKKNKSLER 1828
            D ++++  L +R+    +K  + ++I+ L      S + D+K      ++    + +   
Sbjct: 1562 DKEMRVLRLVDRMKLAEQK--YQTEINRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPY 1619

Query: 1829 AVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISD-------LEKYISQQELEMKK 1881
                L  +  Q  + +++      + +    +YE ++++       LEK + Q +LE   
Sbjct: 1620 LYPWLYPQQKQDDNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQLE--S 1677

Query: 1882 SIRDNSSYRDKVQEMAQEI 1900
             + +  S   KV+ M +++
Sbjct: 1678 QLNNKQSEFSKVESMMEKL 1696



 Score = 89.4 bits (220), Expect = 1e-19
 Identities = 121/549 (22%), Positives = 237/549 (43%), Gaps = 74/549 (13%)

Query: 1403 KNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQK 1462
            K  DS+ K E E   YK   +K+ E  NES  K  +L    R+   K   +   L +   
Sbjct: 373  KQSDSLLKLETE---YKALQHKINEFKNESATKSEELLNQERELFEKRREIDTLLTQASL 429

Query: 1463 DLESTERQKELLSSTIKQQKQQFENCMD-----DLQGNELRLREHI--HALKQAEEDVKN 1515
            + E      +LL     + KQ F+N        D + N L  ++ +   A+ Q +E V  
Sbjct: 430  EYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKKVDSEAIFQLKEKVAQ 489

Query: 1516 MAS------IIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQ--DVKKILSD 1567
                     +++K K   K+ E L +E++++++ +D    E  LE K+ +  + K  L  
Sbjct: 490  ERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADF---ENELEAKQQELFEAKHALER 546

Query: 1568 DLAHLKERLSAVEDRS-QYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEA 1626
                L+++   +  ++ Q  +E ++LK + + S   E  L+ E+  L+ + +        
Sbjct: 547  SFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQQEKQ-------- 598

Query: 1627 KISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQE 1686
                L ++  ++ +   +L+N    +    +EL Q+ E L+   +S + + +   +  +E
Sbjct: 599  ---KLFQERTYFERNAAVLSNR---LQQKREELLQQKETLDQLTKSFEQERLINQREHKE 652

Query: 1687 LESDLNQKTDAL-----QISNAALSSSTQ-KNKEITEKIKYLE-ETLQLQMEQNSRNGEL 1739
            L + + ++ + L       S  +L++S     +E+  K K  E E  + Q+  +  N E+
Sbjct: 653  LVASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEV 712

Query: 1740 VKT----LQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNT-DLQLQLKNLHERLSDTTE 1794
            ++     L  S N  + +  + KQ+  D +  N +L+KLN  +L LQ K L E    T E
Sbjct: 713  IQADLAQLNQSLNQERSELQNAKQRIADFH--NDSLKKLNEYELSLQ-KRLQE--LQTLE 767

Query: 1795 KNAWLSKIHELENMVSLETDL--------------KYEEMKKNKSLERAVEELQTKNSQQ 1840
             N    K H  +N    E +L              K + M+ +   +R  ++ Q  N QQ
Sbjct: 768  AN---QKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQ 824

Query: 1841 TDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEI 1900
             ++    ++   E   A L ++A    L+  ++  +   K    + S+  +K +E A+ +
Sbjct: 825  AEL----DRKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENV 880

Query: 1901 EFWKSRYES 1909
              +K  + +
Sbjct: 881  AGFKRHWSN 889



 Score = 85.9 bits (211), Expect = 1e-18
 Identities = 164/831 (19%), Positives = 335/831 (40%), Gaps = 115/831 (13%)

Query: 865  KFNEQINKLKNDLQEMESKKKFLEEKNQKTVN---ELENTQDLLNQEKENLRK-NESLLN 920
            K  E+ N++K    E++++ + L+ + Q TV    ELE  Q  LN E+    + NESLL 
Sbjct: 949  KLAEKNNQVK---LELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLK 1005

Query: 921  R--------------VKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQE 966
            +              +K  ++ L  +   L +++ +  R+  E+    ++  ++     E
Sbjct: 1006 QREQLTKKIQAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDE 1065

Query: 967  TIREREATLEK-----------LHSKNNELIKQISDLN-----CDISKEQSSQSLIKESK 1010
              +     LEK           L  K  +L    ++LN       I+++Q + S I++  
Sbjct: 1066 AKKRELEELEKIRRSLSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLN-SQIRQFL 1124

Query: 1011 LKLENEIKRLKDVINSKE----EEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSL 1066
            L+ +N  +R  +  N+K+    + ++SF   L   +E L I+ +  +K        LQ  
Sbjct: 1125 LERKN-FQRFSNEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQA 1183

Query: 1067 VTENSDLRSKNENFKKEK----AALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDA 1122
              +    + + +NF  EK     A+  Q +    E   + +K+   K    T+   ++ A
Sbjct: 1184 TLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKA 1243

Query: 1123 VSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSL----VESLND 1178
              E+ +   +L++    L + K N ++ K++     R    +  K  N L     + L  
Sbjct: 1244 --EYSQ--QQLQQKYTNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKA 1299

Query: 1179 SKIKELEARLSQEISLNQYLNKRISGNS---VETNIXXXXXXXXXXXXPL--DKEDIIKK 1233
             +I + + RL +E   N +     +      +E  I             +    +++ KK
Sbjct: 1300 QRIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKK 1359

Query: 1234 YYDLQLAFTEI-TRXXXXXXXXXXXXXSRLRFTETRLASSSFEDXXXXXXXXXXXXXXXD 1292
              +LQ    E+ TR              R  F   RL     +                 
Sbjct: 1360 EGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSN------- 1412

Query: 1293 MDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKF 1352
                       N       + E+   + M E+++ K++ D             S L+  F
Sbjct: 1413 -----------NFKTKAIQEIENSYKRGMEELNFQKKEFDKNK----------SRLYEYF 1451

Query: 1353 RKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRT-NLPVGDIIKNRDSISKY 1411
            RK++ E     S + KL  + ++ +   LE +   + +   T +    ++   +D   K 
Sbjct: 1452 RKMRDEIERKESQV-KLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKD---KV 1507

Query: 1412 EEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQK 1471
            +++I     +  +L E+LNE+      L    R   SK++LL+++++ +++ L   E + 
Sbjct: 1508 DQDIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIETIKRQLHDKEMRV 1567

Query: 1472 ELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKE 1531
              L   +K  +Q+++      + N LR +         ++D+KN    + K+   +    
Sbjct: 1568 LRLVDRMKLAEQKYQT-----EINRLRTQ----TFDSEKQDIKNFFPPLFKINGNDMAFP 1618

Query: 1532 KLI-WEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE---DRSQYTD 1587
             L  W    ++ D D  LQ   L  +++Q +++   ++L  L+ + + +E   D+ Q   
Sbjct: 1619 YLYPWLYPQQKQD-DNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQLES 1677

Query: 1588 EINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHY 1638
            ++N  + E +   K E+ ++K    L  K E+  ND + KI+ L K+++ +
Sbjct: 1678 QLNNKQSEFS---KVESMMEK----LLEKTESRLNDFDQKINYLTKKVNQH 1721



 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 143/759 (18%), Positives = 297/759 (39%), Gaps = 131/759 (17%)

Query: 846  LFIRIKPLLTSSNDMTRT-KKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDL 904
            L ++ K L     D  R  ++ N +  + + +  + +  KK   E+ +K    L  +   
Sbjct: 1028 LALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEELEKIRRSLSQSNVE 1087

Query: 905  LNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGL 964
            L +++E L  + + LN+V+ +++  +   D L S+  +   E+    +   EA+ K   L
Sbjct: 1088 LERKREKLATDFTNLNKVQHNTQINR---DQLNSQIRQFLLERKNFQRFSNEANAKKAFL 1144

Query: 965  QETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENE---IKRLK 1021
             + +R   + L KL  +   + K   D   +  K++  Q+ ++  + K E +   I++ +
Sbjct: 1145 IKRLRSFASNL-KLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEKQNFDIEKQR 1203

Query: 1022 DVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEK-------NCNIAMSRLQSLVTENSDLR 1074
             ++      IK+  +KLS  ++ L+ KLV L+        N N A    Q L  + ++L 
Sbjct: 1204 QLV-----AIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKYTNLL 1258

Query: 1075 SKNENFKKEKAALN--------------NQLKNKESELLKMKEKIDNHKK---------- 1110
               EN ++ K  L+              N L+ ++ +LLK +  +D+  +          
Sbjct: 1259 DLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENERNLH 1318

Query: 1111 ---------------ELATFSKQR----DDAVSEHGKITAELKETRIQLTEYKSNYQKIK 1151
                           +++ F KQR    D  ++ H ++  +  E +  L E ++   K+ 
Sbjct: 1319 FLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRKTKLN 1378

Query: 1152 EEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNI 1211
             +++ F R+ +E E ++           K+ EL+  L  + + N +  K I    +E + 
Sbjct: 1379 NDFAKFSRQREEFENQR----------LKLLELQKTLQTQTNSNNFKTKAI--QEIENSY 1426

Query: 1212 XXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXXSRLRFTETRLAS 1271
                          DK    + Y   +    EI R              +L   ET+  +
Sbjct: 1427 KRGMEELNFQKKEFDKNK-SRLYEYFRKMRDEIERKESQV---------KLVLKETQRKA 1476

Query: 1272 SSFEDXXXXXXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQL 1331
            +  E                + +     D + ++ +D+   +  ++N+L+ E   L++ L
Sbjct: 1477 NLLEAQANKLNIEKNTIDFKEKELKAFKDKV-DQDIDSTNKQRKELNELLNENKLLQQSL 1535

Query: 1332 DIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLR 1391
                    + E AI++  S   K          +  K +    E RV  L D++K     
Sbjct: 1536 -------IERERAINSKDSLLNK--------KIETIKRQLHDKEMRVLRLVDRMKL---- 1576

Query: 1392 DRTNLPVGDIIKNRDSISKYEEEIRYYKLENY--KLQEILNESNGKLSQLTLDLRQSKSK 1449
                           +  KY+ EI   + + +  + Q+I N            +  +   
Sbjct: 1577 ---------------AEQKYQTEINRLRTQTFDSEKQDIKN-----FFPPLFKINGNDMA 1616

Query: 1450 EALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQA 1509
               L   L   QK  ++T + ++L    ++  +Q++EN +++L+     L + +  + Q 
Sbjct: 1617 FPYLYPWLYPQQKQDDNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQI-QL 1675

Query: 1510 EEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQL 1548
            E  + N  S   K+++     EKL+ + E   ND D ++
Sbjct: 1676 ESQLNNKQSEFSKVES---MMEKLLEKTESRLNDFDQKI 1711



 Score = 67.4 bits (163), Expect = 4e-13
 Identities = 116/555 (20%), Positives = 231/555 (41%), Gaps = 105/555 (18%)

Query: 748  KASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLA---DLEKQKDVK--LNNIMIKLT 802
            K   +Q  E    +LQL+   ++  N  +  +  ++A     EK  D K  LN  +++L 
Sbjct: 1171 KRDEQQKKELQQATLQLEQFKFEKQNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELK 1230

Query: 803  ATIRGYTVRK-EITYHLQKL--KKTRVIG---NTFRLYNRLVKEDPWFNLFIRI------ 850
               + Y   K +  Y  Q+L  K T ++    N  R  ++L K+    ++F R+      
Sbjct: 1231 NLSQTYLANKNKAEYSQQQLQQKYTNLLDLKENLERTKDQLDKKHR--SIFARLTKFAND 1288

Query: 851  -----KPLLTSS---NDMTRTKKFNEQ-INKLKNDLQEMESKKKFLEEKNQKTVNELENT 901
                 K LL +    +D  R  K NE+ ++ L N   E E K+  LE++      + +  
Sbjct: 1289 LRFEKKQLLKAQRIVDDKNRLLKENERNLHFLSN---ETERKRAVLEDQISYFEKQRKQA 1345

Query: 902  QDLLNQEKENLRKNESLLNRVKTSSET----LQKQFDDLVSEKDEISREKLEVAQNLEEA 957
             D +    + ++K E  L ++    ET    L   F     +++E   ++L++ + L++ 
Sbjct: 1346 TDAILASHKEVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEFENQRLKLLE-LQKT 1404

Query: 958  HQ--------KIQGLQETIREREATLEKLHSKNNELIKQISDL-------NCDISKEQSS 1002
             Q        K + +QE     +  +E+L+ +  E  K  S L         +I +++S 
Sbjct: 1405 LQTQTNSNNFKTKAIQEIENSYKRGMEELNFQKKEFDKNKSRLYEYFRKMRDEIERKESQ 1464

Query: 1003 QSLI-KESKLK---LENEIKRL---KDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKN 1055
              L+ KE++ K   LE +  +L   K+ I+ KE+E+K+F DK+    +  + +   L + 
Sbjct: 1465 VKLVLKETQRKANLLEAQANKLNIEKNTIDFKEKELKAFKDKVDQDIDSTNKQRKELNEL 1524

Query: 1056 CNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKI---------- 1105
             N      QSL+     + SK+    K+   +  QL +KE  +L++ +++          
Sbjct: 1525 LNENKLLQQSLIERERAINSKDSLLNKKIETIKRQLHDKEMRVLRLVDRMKLAEQKYQTE 1584

Query: 1106 ---------DNHKKELATF------------------------SKQRDDAVSEHGKITAE 1132
                     D+ K+++  F                         KQ D+ +        +
Sbjct: 1585 INRLRTQTFDSEKQDIKNFFPPLFKINGNDMAFPYLYPWLYPQQKQDDNTLQIRQLFEQQ 1644

Query: 1133 LK----ETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARL 1188
            L+        +L E +     ++++    Q E++   ++   S VES+ +  +++ E+RL
Sbjct: 1645 LQFMQQRYENELNELRRQRNLLEKKLDQIQLESQLNNKQSEFSKVESMMEKLLEKTESRL 1704

Query: 1189 SQEISLNQYLNKRIS 1203
            +       YL K+++
Sbjct: 1705 NDFDQKINYLTKKVN 1719



 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 57/259 (22%), Positives = 122/259 (47%), Gaps = 14/259 (5%)

Query: 1636 DHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ-K 1694
            D Y +     N  K  +   E +L ++ ++L  E ++LKG + +  +   EL+  +N  +
Sbjct: 20   DGYLQSEYEKNRSKTDVDKIENQLLKEIKSLEDELKNLKG-LKNQAEDNPELDKKINHLE 78

Query: 1695 TDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSR----NGELVKTLQASCNGY 1750
             D  ++ N   +   QKN  + +K+  L+   +    + +R    N + + +  A+   +
Sbjct: 79   VDLNRLVNEYKNFQFQKN-HMVDKVSELDNLTRFYKNELTRLQQENADFLNSKYANLANF 137

Query: 1751 KDKFDDEKQKNIDLYE-ENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMV 1809
            +  + ++      L E +NQT+ +LN  +      +   ++     N  + K + L N++
Sbjct: 138  QANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDNNVALLQNPNITVEKKNYLLNVI 197

Query: 1810 -SLETDL-KYEEMKKNKSL--ERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQI 1865
              L  +L + E  K+  S+  E    EL + +++  +V E  ++N+ +F+     Y  ++
Sbjct: 198  DQLYNELDQLENQKRLLSIEYENTYRELVSADNELQNVYENIDQNQIQFKHQYQTYRDEL 257

Query: 1866 SDLEKYI--SQQELEMKKS 1882
            S LE+ I  ++QEL  K+S
Sbjct: 258  SQLERKIQLTKQELVDKES 276


>SCER-S28-01-001306 ORFP:YDR285W  ZIP1, Chr IV from 1032427-1035054
          Length = 875

 Score = 80.1 bits (196), Expect = 6e-17
 Identities = 141/628 (22%), Positives = 279/628 (44%), Gaps = 92/628 (14%)

Query: 1339 YDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPV 1398
            Y   N  + LH+        SS SS+D+    F  ++    +L+ +L+    +D   L V
Sbjct: 156  YTMTNGKAPLHTSINN----SSTSSNDVLLEAFTNTQRICSNLKQELQKQQ-QDNAKLKV 210

Query: 1399 GDIIKNRDSISKYEEEIRYYKLENYKLQE----ILNESNGKLSQLTLDLRQS-------- 1446
              +     +  K  E++  YK     LQE    + +  N + ++L  DLRQ+        
Sbjct: 211  R-LQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQETKLK-DLRQNHQLYQRRI 268

Query: 1447 ---KSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHI 1503
               K+    L++ ++ L K+ +  + +       I+  K++ ++C   L   +++    I
Sbjct: 269  SGFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLI 328

Query: 1504 HAL-KQAEEDVKNMASIIEKLKTQ-----NKQKEKL--IWEREMERNDS------DMQLQ 1549
              + K  EE +K++ +   + K       NK +E++  ++E++++++        ++ L+
Sbjct: 329  QEMGKNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKHFDVAKDTLNVGLR 388

Query: 1550 ETLLEL---------KRVQDVKKILSDDLAHLKERLSAVEDRSQYTDE--INRLKEEL-N 1597
             T +EL         ++ +D+K+ L   ++  K+ ++   +    T +  I  ++EEL  
Sbjct: 389  NTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKGLIMGVQEELLT 448

Query: 1598 CSLKAETNLKKEFATLKYKL---ETSTNDSEAKISDLLK-------QLDHYTKVVEMLNN 1647
             S   +T L  E    + +L    + T  + A + +L+K       Q + Y + ++ L +
Sbjct: 449  SSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQSNEYEERIKHLES 508

Query: 1648 EKDAIS---------LAEKE-----LYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ 1693
            E+  +S         L  KE     L +K EA N E   + GK  SLT+  + L ++L +
Sbjct: 509  ERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELKK 568

Query: 1694 KTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDK 1753
              D L+  N  L+ +T+ N E   KI    E ++  +   S N  L + +Q      +++
Sbjct: 569  VQDQLEKLN-NLNITTKSNYE--NKISSQNEIVKALV---SENDTLKQRIQQLVEIKENE 622

Query: 1754 FDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLET 1813
              D   K     + N+ LQKLN ++ +QLK  HE   +  E+N  L    E +     ET
Sbjct: 623  QKDHTTKLEAFQKNNEQLQKLNVEV-VQLK-AHE--LELEEQNRHLKNCLEKK-----ET 673

Query: 1814 DLKYEEMKKNKSLERAVEELQTKNSQQT-DVIELANKNRSEFEEATLKYEAQISDLEKYI 1872
             ++ E +   K+L++ V  L+++    T + +EL + N    EE T   + ++   ++ +
Sbjct: 674  GVE-ESLSDVKTLKQQVIVLKSEKQDITAEKLELQD-NLESLEEVTKNLQQKVQSQKREL 731

Query: 1873 SQ--QELEMKKSIRDNSSYRDKVQEMAQ 1898
             Q  +ELE  K+ + N   +   Q   +
Sbjct: 732  EQKIKELEEIKNHKRNEPSKKGTQNFTK 759



 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 123/553 (22%), Positives = 238/553 (43%), Gaps = 106/553 (19%)

Query: 1299 LDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGE 1358
            L+  +N+   N  + ++++ K   E++YLKR+LD       D    +S           E
Sbjct: 278  LNKTINDLGKNKKEADAELMKKGKEIEYLKRELD-------DCSGQLS-----------E 319

Query: 1359 SSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYY 1418
              + +S + +   +  EE +KS+E            N    D   +    +K+EE  R +
Sbjct: 320  EKIKNSSLIQEMGKNREEMIKSIE------------NFFSEDKAHHLLQFNKFEE--RVH 365

Query: 1419 KLENYKLQEILNES----NGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLE-STERQKEL 1473
             L   KLQ+  + +    N  L   T++L  S + E +L +Q + ++++LE      K+ 
Sbjct: 366  DLFEKKLQKHFDVAKDTLNVGLRNTTVEL--SSNTETMLKQQYEDIKENLEQKMSSSKDE 423

Query: 1474 LSSTIKQ----QKQQFENCMDDLQGNELRLREHI---------HALKQAEEDVKNMASII 1520
            ++ TI +    QK       ++L  +   ++  +           L  A +  KN AS+ 
Sbjct: 424  MAKTINELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLE 483

Query: 1521 EKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE 1580
              +K     K +++   E E     ++ + + L  ++ Q +  + + +            
Sbjct: 484  NLVKA---YKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKE------------ 528

Query: 1581 DRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTK 1640
              +QY D + +L E  N  +   + +  +  +L  K E  +N+ + K+ D L++L++   
Sbjct: 529  --AQYEDLVKKL-EAKNIEI---SQISGKEQSLTEKNENLSNELK-KVQDQLEKLNNLN- 580

Query: 1641 VVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQI 1700
             +   +N ++ IS ++ E+    +AL +E ++LK +I  L +IK+  + D   K +A   
Sbjct: 581  -ITTKSNYENKIS-SQNEI---VKALVSENDTLKQRIQQLVEIKENEQKDHTTKLEAF-- 633

Query: 1701 SNAALSSSTQKNKEITEKIKYLEETLQL---QMEQNSRNGELVKTLQASCNGYKDKFDDE 1757
                     QKN E  +K+    E +QL   ++E   +N  L   L+    G ++   D 
Sbjct: 634  ---------QKNNEQLQKLNV--EVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDV 682

Query: 1758 ---KQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETD 1814
               KQ+ I L  E Q +     +LQ  L++L E   +  +K    S+  ELE  +     
Sbjct: 683  KTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQ--SQKRELEQKIK---- 736

Query: 1815 LKYEEMKKNKSLE 1827
             + EE+K +K  E
Sbjct: 737  -ELEEIKNHKRNE 748



 Score = 67.0 bits (162), Expect = 5e-13
 Identities = 92/425 (21%), Positives = 172/425 (40%), Gaps = 83/425 (19%)

Query: 857  SNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLL--------NQE 908
            SN     +K  +   KLK  LQ   S    + EK  K  + LE  Q+ +        NQE
Sbjct: 192  SNLKQELQKQQQDNAKLKVRLQSYASNSDKINEKVGKYKSCLETLQERIATLTSHKNNQE 251

Query: 909  KE--NLRKNESLLNR----VKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQ 962
             +  +LR+N  L  R     KTS E L K  +DL   K E   E ++  + +E   +++ 
Sbjct: 252  TKLKDLRQNHQLYQRRISGFKTSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKRELD 311

Query: 963  G----LQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKL------- 1011
                 L E   +  + ++++     E+IK I     +   E  +  L++ +K        
Sbjct: 312  DCSGQLSEEKIKNSSLIQEMGKNREEMIKSIE----NFFSEDKAHHLLQFNKFEERVHDL 367

Query: 1012 ---KLENEIKRLKDVIN-------------------SKEEEIK-SFNDKLSSSEED---- 1044
               KL+      KD +N                    + E+IK +   K+SSS+++    
Sbjct: 368  FEKKLQKHFDVAKDTLNVGLRNTTVELSSNTETMLKQQYEDIKENLEQKMSSSKDEMAKT 427

Query: 1045 ------------LDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLK 1092
                        + ++   L  + NI  + +  +     +L        K  A+L N +K
Sbjct: 428  INELSVTQKGLIMGVQEELLTSSGNIQTALVSEMNNTRQELLDDASQTAKNYASLENLVK 487

Query: 1093 NKESELL---KMKEKIDNHKKELATFSKQRDDAVSEHG-------KITAELKETRIQLTE 1142
              ++E++   + +E+I + + E +T S Q++  +S  G        +  +L+   I++++
Sbjct: 488  AYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIEISQ 547

Query: 1143 YKSNYQKIKEEYSNFQRETKE-QEQKKR----NSLVESLNDSKIKELEARLSQEISLNQY 1197
                 Q + E+  N   E K+ Q+Q ++    N   +S  ++KI      +   +S N  
Sbjct: 548  ISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDT 607

Query: 1198 LNKRI 1202
            L +RI
Sbjct: 608  LKQRI 612



 Score = 65.9 bits (159), Expect = 1e-12
 Identities = 145/786 (18%), Positives = 297/786 (37%), Gaps = 110/786 (13%)

Query: 891  NQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEV 950
            N   +    NTQ + +  K+ L+K +         +  L+ +     S  D+I+      
Sbjct: 177  NDVLLEAFTNTQRICSNLKQELQKQQQ-------DNAKLKVRLQSYASNSDKIN------ 223

Query: 951  AQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESK 1010
                 E   K +   ET++ER ATL     KNN+  K + DL       Q  Q  I   K
Sbjct: 224  -----EKVGKYKSCLETLQERIATLTS--HKNNQETK-LKDLR---QNHQLYQRRISGFK 272

Query: 1011 LKLENEIKRLKDVINSKEE---EIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLV 1067
              +EN  K + D+  +K+E   E+     ++   + +LD     L +      S +Q + 
Sbjct: 273  TSIENLNKTINDLGKNKKEADAELMKKGKEIEYLKRELDDCSGQLSEEKIKNSSLIQEMG 332

Query: 1068 TENSDLRSKNENFKKEKAALNNQLKNKESELLK--MKEKIDNHKKELATFSKQRDDAVSE 1125
                ++    ENF  E  A +    NK  E +    ++K+  H      F   +D     
Sbjct: 333  KNREEMIKSIENFFSEDKAHHLLQFNKFEERVHDLFEKKLQKH------FDVAKDT---- 382

Query: 1126 HGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKI--KE 1183
               +   L+ T ++L+   +    +K++Y + +   +++    ++ + +++N+  +  K 
Sbjct: 383  ---LNVGLRNTTVELSS--NTETMLKQQYEDIKENLEQKMSSSKDEMAKTINELSVTQKG 437

Query: 1184 LEARLSQEISLNQYLNKRISGNSVETNIXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTE 1243
            L   + +E+  +       SGN ++T +              D     K Y  L+     
Sbjct: 438  LIMGVQEELLTS-------SGN-IQTALVSEMNNTRQELLD-DASQTAKNYASLE----N 484

Query: 1244 ITRXXXXXXXXXXXXXSRLRFTETRLASSSFEDXXXXXXXXXXXXXXXDM-----DPSIP 1298
            + +              R++  E+  ++ S +                D+       +I 
Sbjct: 485  LVKAYKAEIVQSNEYEERIKHLESERSTLSSQKNQIISSLGTKEAQYEDLVKKLEAKNIE 544

Query: 1299 LDSILNEPLDNCPDKESDINKLMLEVDYLKR--QLDIETRAHYDAENAISALHSKFRKIQ 1356
            +  I  +        E+  N+L    D L++   L+I T+++Y  EN IS+ +   + + 
Sbjct: 545  ISQISGKEQSLTEKNENLSNELKKVQDQLEKLNNLNITTKSNY--ENKISSQNEIVKALV 602

Query: 1357 GESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIR 1416
             E+      I +L  E  E   K    KL+                KN + + K   E+ 
Sbjct: 603  SENDTLKQRIQQL-VEIKENEQKDHTTKLEAFQ-------------KNNEQLQKLNVEVV 648

Query: 1417 YYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSS 1476
              K    +L+E        L +    + +S S    L +Q+  L+ + +    +K  L  
Sbjct: 649  QLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQQVIVLKSEKQDITAEKLELQD 708

Query: 1477 TIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQK-----E 1531
             ++  ++  +N    +Q  +  L + I  L++ +   +N  S   K  TQN  K     +
Sbjct: 709  NLESLEEVTKNLQQKVQSQKRELEQKIKELEEIKNHKRNEPS---KKGTQNFTKPSDSPK 765

Query: 1532 KLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINR 1591
            K      +  N+S   +   + +  +V  +           K R+++ ++ S++ DE + 
Sbjct: 766  KNATTSNLFPNNS-AAIHSPMKKCPKVDHIS----------KSRINSSKETSKFNDEFD- 813

Query: 1592 LKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDA 1651
            L    N  L+       +   ++ K++  +N  +  IS   K L        ++ +E  +
Sbjct: 814  LSSSSNDDLELTNPSPIQIKPVRGKIKKGSNCMKPPISSRKKLL--------LVEDEDQS 865

Query: 1652 ISLAEK 1657
            + +++K
Sbjct: 866  LKISKK 871



 Score = 60.5 bits (145), Expect = 5e-11
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 37/206 (17%)

Query: 864  KKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVK 923
            +K NEQ+ KL  ++ ++++ +  LEE+N+   N LE              K E+ +    
Sbjct: 634  QKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLE--------------KKETGVEESL 679

Query: 924  TSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLE------- 976
            +  +TL++Q   L SEK +I+ EKLE+  NLE   +  + LQ+ ++ ++  LE       
Sbjct: 680  SDVKTLKQQVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSQKRELEQKIKELE 739

Query: 977  --KLHSKNNELIKQISDL---NCDISKEQSSQSLIKESKLKLENEIKRL-------KDVI 1024
              K H +N    K   +    +    K  ++ +L   +   + + +K+        K  I
Sbjct: 740  EIKNHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSAAIHSPMKKCPKVDHISKSRI 799

Query: 1025 NSKEEEIKSFNDKL---SSSEEDLDI 1047
            NS +E  K FND+    SSS +DL++
Sbjct: 800  NSSKETSK-FNDEFDLSSSSNDDLEL 824



 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 76/382 (19%), Positives = 159/382 (41%), Gaps = 49/382 (12%)

Query: 850  IKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEK 909
            I+  L S  + TR +  ++     KN        K +  E  Q   NE E     L  E+
Sbjct: 453  IQTALVSEMNNTRQELLDDASQTAKNYASLENLVKAYKAEIVQS--NEYEERIKHLESER 510

Query: 910  ENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIR 969
              L   +   N++ +S  T + Q++DLV + +  + E  +++   +   +K + L   ++
Sbjct: 511  STLSSQK---NQIISSLGTKEAQYEDLVKKLEAKNIEISQISGKEQSLTEKNENLSNELK 567

Query: 970  EREATLEKLHSKN--------------NELIKQISDLNCDISKEQSSQSLIKESK----- 1010
            + +  LEKL++ N              NE++K +   N  + +       IKE++     
Sbjct: 568  KVQDQLEKLNNLNITTKSNYENKISSQNEIVKALVSENDTLKQRIQQLVEIKENEQKDHT 627

Query: 1011 LKLENEIKRLKDV--INSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVT 1068
             KLE   K  + +  +N +  ++K+   +L      L   L   E     ++S +++L  
Sbjct: 628  TKLEAFQKNNEQLQKLNVEVVQLKAHELELEEQNRHLKNCLEKKETGVEESLSDVKTLKQ 687

Query: 1069 ENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGK 1128
            +   L+S+ ++   EK  L + L++ E     +++K+ + K+EL                
Sbjct: 688  QVIVLKSEKQDITAEKLELQDNLESLEEVTKNLQQKVQSQKREL---------------- 731

Query: 1129 ITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARL 1188
                  E +I+  E   N+++ +      Q  TK  +  K+N+   +L  +    + + +
Sbjct: 732  ------EQKIKELEEIKNHKRNEPSKKGTQNFTKPSDSPKKNATTSNLFPNNSAAIHSPM 785

Query: 1189 SQEISLNQYLNKRISGNSVETN 1210
             +   ++     RI+ +S ET+
Sbjct: 786  KKCPKVDHISKSRIN-SSKETS 806


>MGEN-G37-01-000335 MG328  conserved hypothetical protein
          Length = 756

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 92/387 (23%), Positives = 172/387 (44%), Gaps = 66/387 (17%)

Query: 856  SSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQ-------KTVNELENTQDLLNQE 908
            +SND    +K+++ +N+ +    E E+K   L+ K Q       KT++ L++  D+L  E
Sbjct: 402  TSND--ENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDE 459

Query: 909  KENLRKNESLLNRVKTSSETLQK--------------QFDDLVSEKDEISREKLEV---- 950
             E  R  ++  N  K S E  +K              Q  D ++E +E + EK  +    
Sbjct: 460  IEWTRSKDNDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQ 519

Query: 951  AQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISD-------LNCDISKEQSSQ 1003
              NL++  +  Q L    +++ ATLE+++   NE I  + D        N  ++K Q+  
Sbjct: 520  LVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADH 579

Query: 1004 SLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRL 1063
             +++ES  KL+ + ++LK   N   +  + + D LS+ EE        LEK    A   L
Sbjct: 580  EILQESYGKLKTDFEKLKK--NKLNDANEQYQDLLSAFEETNS----ELEK----AKQSL 629

Query: 1064 QSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAV 1123
             +  +EN+ L+ +            N L+N + EL       D H  EL T   +++   
Sbjct: 630  SASDSENNQLKQQ-----------INSLENAKKELQFTPVTSDEHLDELETLKIEKEQLF 678

Query: 1124 SEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQR--ETKEQEQKKRNSLVESLNDSKI 1181
             E+  +  +L+       +  +N  +  +E S+  +  E K+   KKR+ ++++ +D   
Sbjct: 679  LENQALQNQLQ----YFNDISANQTEEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKL- 733

Query: 1182 KELEARLSQEISLNQYLNKRISGNSVE 1208
                A+LS++  +  Y  +    N+ E
Sbjct: 734  ----AKLSKKERIQAYAERLAKINANE 756



 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 123/589 (20%), Positives = 227/589 (38%), Gaps = 111/589 (18%)

Query: 1339 YDAENAISALHSKFRKIQGESSLSSSDIYK--LKFEASEERVKSLED------------- 1383
            Y  EN   A++   + IQ + +     + K  LK +   ++V  L+D             
Sbjct: 192  YSIENLTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADL 251

Query: 1384 KLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKL------- 1436
            K +   L++  N  + D+ +  D + +   E +   L   KLQ+ L + N  L       
Sbjct: 252  KKQIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNK 311

Query: 1437 --------SQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENC 1488
                     ++  +L   K ++ALLS+QLD L+    + ++Q  LL            N 
Sbjct: 312  PVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALL--------PVLNNQ 363

Query: 1489 MDDLQGNELRLREHIHALKQAEEDVKNMASIIEKL--KTQNKQKEK---------LIWER 1537
            +++LQ   L  RE    L   E++   + + ++KL   T N + EK         L+++ 
Sbjct: 364  INELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDE 423

Query: 1538 EMERNDS--------DMQLQETLLELKRVQDV-------------------------KKI 1564
               + D         ++  Q+T+  LK   DV                         KK 
Sbjct: 424  NETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKA 483

Query: 1565 LSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCS--------LKAETNLKKEFATLKYK 1616
            L + L  L  +   ++D+    +E N  K  LN +        LK   NL   F   + K
Sbjct: 484  LDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNL---FNVAQDK 540

Query: 1617 LETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESL-KG 1675
            L T   +    +++ +  L+      E  NN    +    + L + Y  L T+ E L K 
Sbjct: 541  LAT-LEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKN 599

Query: 1676 KIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSR 1735
            K+    +  Q+L S   +    L+ +  +LS+S  +N ++ ++I  LE   +        
Sbjct: 600  KLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLENAKK-------- 651

Query: 1736 NGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQK----LNTDLQLQLKNLHERLSD 1791
              EL  T   + + + D+ +  K +   L+ ENQ LQ      N     Q + + E   +
Sbjct: 652  --ELQFT-PVTSDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDE 708

Query: 1792 TTEKNAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQ 1840
                     +I + + ++  + D K  ++ K + ++   E L   N+ +
Sbjct: 709  DKPVEIKKPRIKKRDFVIQNKDD-KLAKLSKKERIQAYAERLAKINANE 756



 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 54/393 (13%)

Query: 867  NEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSS 926
            N+QI  L+   QE++  K+ L E+  K ++  +   DL       L++N  L  +++   
Sbjct: 263  NDQIFDLE---QEIDDLKRRLSEEKSKHLHTKKLQDDL-------LQENRDLYEQLQNKP 312

Query: 927  ETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELI 986
              +    D++  E + + +EK  ++  L+    K   +Q+ +    A L  L+++ NEL 
Sbjct: 313  VAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQL----ALLPVLNNQINELQ 368

Query: 987  KQISDLNCDISKEQSSQ--SLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSE-- 1042
             Q+      ++  +++Q   L+++    L+NE+K+L D  N+  +E + ++D L+  E  
Sbjct: 369  NQL------LTAREANQRLDLVEQENDFLKNELKKLHD--NTSNDENEKYDDLLNQYELL 420

Query: 1043 ----EDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESEL 1098
                E    KL   ++  N+   +  S +   +D+      + + K   +N   N ++  
Sbjct: 421  FDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSK---DNDFNNTKNSF 477

Query: 1099 LKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQ 1158
             + K+ +D     L   ++Q  D +       AEL+E      E KSN      +  N Q
Sbjct: 478  EEQKKALDEKLNGLTIQNQQLQDKI-------AELEE----WNEEKSNLN--TNQLVNLQ 524

Query: 1159 RETKEQEQ-----KKRNSLVESLN---DSKIKELEARLSQEISLNQYLNKRISGNSVETN 1210
            ++ K+ +      + + + +E +N   + KI +LE  LS   + N  L K  + + +   
Sbjct: 525  QQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQE 584

Query: 1211 IXXXXXXXXXXXXPLDKEDIIKKYYDLQLAFTE 1243
                              D  ++Y DL  AF E
Sbjct: 585  SYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEE 617



 Score = 53.5 bits (127), Expect = 6e-09
 Identities = 137/713 (19%), Positives = 275/713 (38%), Gaps = 131/713 (18%)

Query: 874  KNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQF 933
            KN L    ++ K  EE+ Q+TV++    Q++ +Q          L   +KT  + L+   
Sbjct: 85   KNVLNHYANQLKTREEE-QQTVDQTMAFQEVDDQSV--------LTKEIKTGFQELKPSV 135

Query: 934  DDLVSEKDEISREKLEVAQNLEEAHQKIQGLQET------------IREREATLEKLHSK 981
                 +KDEI  E  +     E  +Q  + + ET            ++E E   +  +S 
Sbjct: 136  ITAEDDKDEIKPEATKQVSFEELFNQPSEEINETKKPEVQIFSTDKVKEPE-QFDDFYSI 194

Query: 982  NNELIKQISDLNCDISKEQS-SQSLIKESKLKLENEIKRLKDVINSKEEEI--------- 1031
             N L K I+ ++  I  +Q+  Q  + +  LK ++  K++ ++ +   +E+         
Sbjct: 195  EN-LTKAINPVHKTIQYDQNDDQPFVVKRILKEQHPTKKVDELDDYNNKELLLENADLKK 253

Query: 1032 ------KSFNDKLSSSEEDLD--IKLVTLEKNCNIAMSRLQ-SLVTENSDL--------- 1073
                  ++ ND++   E+++D   + ++ EK+ ++   +LQ  L+ EN DL         
Sbjct: 254  QIDDLKENNNDQIFDLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPV 313

Query: 1074 ---------RSKNENFKKEKAALNNQ---LKNKESEL---LKMKEKIDNHKKELATFSKQ 1118
                       + EN K+EKA L++Q   LKNK S +   L +   ++N   EL      
Sbjct: 314  AINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINEL------ 367

Query: 1119 RDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESL-- 1176
                  ++  +TA     R+ L E ++++  +K E       T   E +K + L+     
Sbjct: 368  ------QNQLLTAREANQRLDLVEQENDF--LKNELKKLHDNTSNDENEKYDDLLNQYEL 419

Query: 1177 ----NDSKIKELEARLSQEISLNQYLNKRISGNSVETNI----------XXXXXXXXXXX 1222
                N++K  +L+ +   + +LN    K IS    E ++                     
Sbjct: 420  LFDENETKFDKLQVK---QQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNS 476

Query: 1223 XPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXXSRLRFTETRLASSSFEDXXXXXX 1282
                K+ + +K   L +   ++ +             S L   +        +D      
Sbjct: 477  FEEQKKALDEKLNGLTIQNQQL-QDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFN 535

Query: 1283 XXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKL--------MLEVDYLKRQLDIE 1334
                     + + ++ L+  +N+  D     E+  N L        +L+  Y K + D E
Sbjct: 536  VAQDKLATLE-EVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFE 594

Query: 1335 ----------TRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDK 1384
                         + D  +A    +S+  K +   S S S+  +LK     +++ SLE+ 
Sbjct: 595  KLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLK-----QQINSLENA 649

Query: 1385 LKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLR 1444
             K +     T+       ++ D +   + E     LEN  LQ  L   N   +  T +++
Sbjct: 650  KKELQFTPVTS------DEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIK 703

Query: 1445 QSKSKEALLSEQLDRLQK-DLESTERQKELLSSTIKQQKQQFENCMDDLQGNE 1496
            ++  ++  +  +  R++K D     +  +L   + K++ Q +   +  +  NE
Sbjct: 704  EASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERLAKINANE 756



 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 78/406 (19%), Positives = 166/406 (40%), Gaps = 51/406 (12%)

Query: 1301 SILNEPLDNCPDKESDINKL---MLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQG 1357
            S + + L   P   + IN+L   +L      ++LD+  + +   +N +  LH      + 
Sbjct: 348  SNVQQQLALLPVLNNQINELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDEN 407

Query: 1358 ESSLSSSDIYKLKFEASEERVKSLEDKLKTM---------PLRDRTNLPVGDIIKNRDSI 1408
            E      + Y+L F+ +E +   L+ K + +          L+   ++ + +I   R   
Sbjct: 408  EKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKD 467

Query: 1409 SKYEEEIRYYKLENYKLQEILNE---SNGKLSQLTLDLRQ-SKSKEALLSEQLDRLQKDL 1464
            + +      ++ +   L E LN     N +L     +L + ++ K  L + QL  LQ+ L
Sbjct: 468  NDFNNTKNSFEEQKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQL 527

Query: 1465 ESTERQKELLS---STIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIE 1521
            + ++    +     +T+++        ++DL+          + L + + D + +     
Sbjct: 528  KDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQESYG 587

Query: 1522 KLKTQ-NKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE 1580
            KLKT   K K+  + +   +  D     +ET  EL++ +        +   LK++++++E
Sbjct: 588  KLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQINSLE 647

Query: 1581 D-----------RSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKIS 1629
            +             ++ DE+  LK E       +  L  E   L+ +L+   ND  A  +
Sbjct: 648  NAKKELQFTPVTSDEHLDELETLKIE-------KEQLFLENQALQNQLQ-YFNDISANQT 699

Query: 1630 DLLKQLDHYTKVVE-----------MLNNEKDAIS-LAEKELYQKY 1663
            + +K+     K VE           ++ N+ D ++ L++KE  Q Y
Sbjct: 700  EEIKEASDEDKPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAY 745


>MPNE-M12-01-000474 gi|13508213|ref|NP_110162.1|  coiled coil protein,
            putative structural protein involved in cytosceleton
            [Mycoplasma pneumoniae]
          Length = 1033

 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 108/569 (18%), Positives = 227/569 (39%), Gaps = 58/569 (10%)

Query: 1351 KFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKN------ 1404
            KF   + +  L+     + +  + E  V SL+   + + L +R N  +   IK       
Sbjct: 478  KFDSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKL 537

Query: 1405 RDSISKYEEEIRYYKL----ENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRL 1460
             D  +KY   ++ Y+L     + KL+E+ +E +         L Q +     L ++LD++
Sbjct: 538  NDENTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQV 597

Query: 1461 QKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASII 1520
            +    +T  +  L +   +QQK   E     L  +     E++ AL     +++N  +++
Sbjct: 598  K----ATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVL 653

Query: 1521 E---KLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLS 1577
            E   K KT    K   + ++++E+   D+ L +                       E+L+
Sbjct: 654  EFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQ-----------------------EQLA 690

Query: 1578 AVEDRSQ-YTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLD 1636
              + ++Q  TD++   + +LN   +++ NL +        L+T     +   + L  + +
Sbjct: 691  TFKQQNQSLTDKLMASETQLNHLQQSDENLTQ--------LQTQHELLQESYNKLQDEAN 742

Query: 1637 HYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTD 1696
            H  +      NE DA         Q  E L  +C +++ ++  L ++K   E +LN + +
Sbjct: 743  HTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWE-NLNTEHN 801

Query: 1697 ALQISNAALSSSTQKNKEITEKIKYLEETLQ-----LQMEQNSRNGELVKTLQASCNGYK 1751
             LQ   A      Q       +I+   E LQ     ++ E N      +    A      
Sbjct: 802  LLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLL 861

Query: 1752 DKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSL 1811
              ++  +  +  L +E Q L ++N + Q   + LH      ++ +A L+++    N +  
Sbjct: 862  SAYELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQA 921

Query: 1812 ETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANK-NRSEFEEATLKYEAQISDLEK 1870
               +  E +++   ++   + L  +N      ++  N+ N S+  E   K +  +   E 
Sbjct: 922  TPPVSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETVK--EV 979

Query: 1871 YISQQELEMKKSIRDNSSYRDKVQEMAQE 1899
             I ++E+ +    +     RD V E  ++
Sbjct: 980  IIVEKEIPVPPEKKPRLKKRDIVIENKED 1008



 Score = 64.3 bits (155), Expect = 3e-12
 Identities = 115/552 (20%), Positives = 222/552 (40%), Gaps = 49/552 (8%)

Query: 1369 LKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEI 1428
            L+ +  E+  K L+     + L++R  L           +++ ++++ +    N  L   
Sbjct: 373  LQIQLEEQLAKPLQYDQSPV-LQERIELLQNQNTNLTQELNELQQKL-FKSQNNSLLLAR 430

Query: 1429 LNESNGKLSQ-LTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFEN 1487
            L E N  L Q L  +L ++     +L +QL++LQ+D  S   Q E      K+ ++Q   
Sbjct: 431  LEEENRTLKQHLQNNLPEANQLNFVLEKQLEQLQQDKHSLTLQIEQYKFDSKKHQEQLA- 489

Query: 1488 CMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQ 1547
             +  L+     L   + +LKQ  + +  +      LKT+ KQ       RE + ND + +
Sbjct: 490  LIPSLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQL------RETKLNDENTK 543

Query: 1548 LQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLK 1607
             +  L + + ++        +L H  E+  A +   +   ++ R  E L   L       
Sbjct: 544  YRNLLKQYELMRADSDAKLKELEH--EQHLAHQHHQEQLAQLQRHNEALVKELDQVKATN 601

Query: 1608 KEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALN 1667
             E        E      E K S LL  L    + V+       A+ +   EL  +   L 
Sbjct: 602  FELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQ-------ALGITNSELQNQLNVLE 654

Query: 1668 -TECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL 1726
             T  E       +LT  KQ+LE    Q    L ++   L++  Q+N+ +T+K+   E  L
Sbjct: 655  FTHKEKTAFDSKTLTLTKQQLE----QTQFDLSLTQEQLATFKQQNQSLTDKLMASETQL 710

Query: 1727 QLQMEQNSRNGELVKT----LQASCNGYKDKFD------DEKQKNIDLYEENQTLQKLNT 1776
               ++Q+  N   ++T    LQ S N  +D+ +       + Q  +D   +   L K N 
Sbjct: 711  N-HLQQSDENLTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNN 769

Query: 1777 -DLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEMKKNKS-------LER 1828
             +L  +  N+   L D          ++   N++  +   + E+M+   S          
Sbjct: 770  EELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHE 829

Query: 1829 AVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSS 1888
             ++E   K   + + I++ N N     EA  +Y+  +S  E  +     ++K+ ++  + 
Sbjct: 830  LLQESYNKVKAELNEIQITNLN-----EANAQYQDLLSAYE-LLQSNHNKLKQELQVLNQ 883

Query: 1889 YRDKVQEMAQEI 1900
               + Q++AQ++
Sbjct: 884  VNLEKQQLAQKL 895



 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 122/524 (23%), Positives = 217/524 (41%), Gaps = 92/524 (17%)

Query: 1427 EILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFE 1486
            E+L   N  L+Q   +L+Q   K    S  L RL+++           + T+KQ  Q   
Sbjct: 398  ELLQNQNTNLTQELNELQQKLFKSQNNSLLLARLEEE-----------NRTLKQHLQ--N 444

Query: 1487 NCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDM 1546
            N  +  Q N +  ++    L+Q ++D  ++   IE+ K  +K+ ++ +      R++ + 
Sbjct: 445  NLPEANQLNFVLEKQ----LEQLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEIN- 499

Query: 1547 QLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQY-TDEINRLKE-ELNCSLKAET 1604
             L+  ++ LK+                +RLS +E  + +   EI +L+E +LN       
Sbjct: 500  SLETEVISLKQT--------------NQRLSLIERENNFLKTEIKQLRETKLNDENTKYR 545

Query: 1605 NLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYE 1664
            NL K++       E    DS+AK    LK+L+H   +    + E+ A      +L +  E
Sbjct: 546  NLLKQY-------ELMRADSDAK----LKELEHEQHLAHQHHQEQLA------QLQRHNE 588

Query: 1665 ALNTECESLKGKIVSLTKIKQELESD---LNQKTDALQISNAALSSSTQ----KNKEITE 1717
            AL  E + +K     L    Q  E     L QK  +L  S  A   + Q     N E+  
Sbjct: 589  ALVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQN 648

Query: 1718 KIKYLE-----------ETLQL---QMEQN----SRNGELVKTLQASCNGYKDKFDDEKQ 1759
            ++  LE           +TL L   Q+EQ     S   E + T +       DK    + 
Sbjct: 649  QLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMASET 708

Query: 1760 KNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEE 1819
            +   L + ++ L +L T  +L L+  + +L D  E N    + H+ +N    E D  +++
Sbjct: 709  QLNHLQQSDENLTQLQTQHEL-LQESYNKLQD--EANHTQQQFHQAQN----ELDAAHQQ 761

Query: 1820 MKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEM 1879
            +   K      EEL  K S   + +   N+ ++ +E    ++      L+   +QQ+ +M
Sbjct: 762  LALFKQNN---EELTDKCSNIQNELHDLNRVKTNWENLNTEHNL----LQDKYAQQKEQM 814

Query: 1880 KKSIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSNNAQ 1923
            +     N +      E+ QE  + K + E   I   N++  NAQ
Sbjct: 815  QHE-HSNLAQIQAEHELLQE-SYNKVKAELNEIQITNLNEANAQ 856



 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 115/565 (20%), Positives = 235/565 (41%), Gaps = 69/565 (12%)

Query: 652  FKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIR 711
            +K  S +H+EQ + L+  L S         +   V  +K  N+RL L +   N +   I+
Sbjct: 477  YKFDSKKHQEQ-LALIPSLRSEINS-----LETEVISLKQTNQRLSLIERENNFLKTEIK 530

Query: 712  LAREGYPN--RIAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQLDTK-- 767
              RE   N     ++   ++Y ++  ++          +    Q+ +  L  LQ   +  
Sbjct: 531  QLRETKLNDENTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQRHNEAL 590

Query: 768  VYKIGNTKLF-FKAGVLADLEKQKDVKLNNIMIKLTATIRGYT--------VRKEITYHL 818
            V ++   K   F+ G+ A   +Q+ V L      L A+++              E+   L
Sbjct: 591  VKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQL 650

Query: 819  QKLK-----KTRVIGNTFRLYNRLVKEDPWFNLFIRIKPLLT-SSNDMTRTKKF---NEQ 869
              L+     KT     T  L  + + E   F+L +  + L T    + + T K      Q
Sbjct: 651  NVLEFTHKEKTAFDSKTLTLTKQQL-EQTQFDLSLTQEQLATFKQQNQSLTDKLMASETQ 709

Query: 870  INKLKN---DLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSS 926
            +N L+    +L +++++ + L+E   K  +E  +TQ   +Q +  L      L   K ++
Sbjct: 710  LNHLQQSDENLTQLQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNN 769

Query: 927  ETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELI 986
            E L  +  ++ +E  +++R    V  N E  + +   LQ+   +++  ++  HS      
Sbjct: 770  EELTDKCSNIQNELHDLNR----VKTNWENLNTEHNLLQDKYAQQKEQMQHEHS------ 819

Query: 987  KQISDLNCDISKEQSSQSLIKESKLKLENEIKRLK----DVINSKEEEIKSFNDKLSSSE 1042
                    ++++ Q+   L++ES  K++ E+  ++    +  N++ +++ S  + L S+ 
Sbjct: 820  --------NLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSAYELLQSNH 871

Query: 1043 EDLDIKLVTLEKNCNIAMSRL-QSLVTENSDLRSKNENFKKEKAALNNQLKNK--ESELL 1099
              L  +L  L +  N+   +L Q L   +  L   +    + +AA NN         ELL
Sbjct: 872  NKLKQELQVLNQ-VNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELL 930

Query: 1100 KMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQR 1159
            +   ++   K+ L     Q++ A+    +   EL  +  Q  E K+   +  +E    ++
Sbjct: 931  EQFNQVQLEKQRLL----QQNLALVHELQYFNELNSS--QTHEIKTKQDETVKEVIIVEK 984

Query: 1160 E-----TKEQEQKKRNSLVESLNDS 1179
            E      K+   KKR+ ++E+  D+
Sbjct: 985  EIPVPPEKKPRLKKRDIVIENKEDA 1009



 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 108/622 (17%), Positives = 238/622 (38%), Gaps = 49/622 (7%)

Query: 998  KEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCN 1057
            +EQ ++ L  +    L+  I+ L++   +  +E+     KL  S+ +  + L  LE+   
Sbjct: 378  EEQLAKPLQYDQSPVLQERIELLQNQNTNLTQELNELQQKLFKSQNN-SLLLARLEEENR 436

Query: 1058 IAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKE-KIDN--HKKELAT 1114
                 LQ+ + E + L     NF  EK  L    ++K S  L++++ K D+  H+++LA 
Sbjct: 437  TLKQHLQNNLPEANQL-----NFVLEKQ-LEQLQQDKHSLTLQIEQYKFDSKKHQEQLAL 490

Query: 1115 FSKQRDDAVSEHGKITAELKET--RIQLTEYKSNYQKIK----EEYSNFQRETKEQEQKK 1168
                R +  S   ++ + LK+T  R+ L E ++N+ K +     E       TK +   K
Sbjct: 491  IPSLRSEINSLETEVIS-LKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLK 549

Query: 1169 RNSLVESLNDSKIKELE-------ARLSQEISLNQYLNKRISGNSVETNIXXXXXXXXXX 1221
            +  L+ + +D+K+KELE           ++++  Q  N+ +     +             
Sbjct: 550  QYELMRADSDAKLKELEHEQHLAHQHHQEQLAQLQRHNEALVKELDQVKATNFELGLAAQ 609

Query: 1222 XXPLDKEDIIKKYYDLQLAFTEITRXXXXXXXXXXXXXSRLRFTE-TRLASSSFEDXXXX 1280
                 K  + +K   L  +                   ++L   E T    ++F+     
Sbjct: 610  GFEQQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSKTLT 669

Query: 1281 XXXXXXXXXXXDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYD 1340
                       D+       S+  E L     +   +   ++  +     L         
Sbjct: 670  LTKQQLEQTQFDL-------SLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENLTQ 722

Query: 1341 AENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGD 1400
             +     L   + K+Q E++ +    ++ + E      +    K     L D+ +    +
Sbjct: 723  LQTQHELLQESYNKLQDEANHTQQQFHQAQNELDAAHQQLALFKQNNEELTDKCS----N 778

Query: 1401 IIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRL 1460
            I      +++ +        E+  LQ+   +   ++     +L Q +++  LL E  +++
Sbjct: 779  IQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKV 838

Query: 1461 QKDLESTERQKELLSSTIKQQKQQFENCM---DDLQGNELRLREHIHALKQAEEDVKNMA 1517
            + +L       E+  + + +   Q+++ +   + LQ N  +L++ +  L Q   + + +A
Sbjct: 839  KAEL------NEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQVLNQVNLEKQQLA 892

Query: 1518 SIIEKLKTQNKQKEKLIWEREMERND---SDMQLQETLLELKRVQ-DVKKILSDDLAHLK 1573
              +        Q    + + +   N+   +     E L +  +VQ + +++L  +LA + 
Sbjct: 893  QKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEKQRLLQQNLALVH 952

Query: 1574 ERLSAVEDRSQYTDEINRLKEE 1595
            E     E  S  T EI   ++E
Sbjct: 953  ELQYFNELNSSQTHEIKTKQDE 974


>SYNE-PCC-01-000727 sll1120
          Length = 1200

 Score = 60.5 bits (145), Expect = 5e-11
 Identities = 58/299 (19%), Positives = 130/299 (43%), Gaps = 37/299 (12%)

Query: 868  EQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSE 927
            +Q+ +   D+Q+++ + +  E   ++TV   + TQ L+   ++            +   E
Sbjct: 702  KQLRQRLQDIQQVQGRNE--ELLLERTVRSRQLTQQLMEMRQQQ--------REAQLHGE 751

Query: 928  TLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIK 987
              ++    L  ++ +I+++++   Q L E  Q +  LQ+++   E  L     +   L  
Sbjct: 752  QTERDIARLSQQQTQINQQQINQQQKLAELQQNLALLQQSLPPLEQQLASAQQQLTAL-- 809

Query: 988  QISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI 1047
                   + S+       I+     +E E +R    +   E+ +K     L +S + L+ 
Sbjct: 810  -------ETSQTHQQWQTIQIQIRTVEAEYQRQLQALRQGEDHLKD----LQNSSQRLEE 858

Query: 1048 KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDN 1107
            K+   ++   IA  + Q L      L  + E  K   A +N  ++  E++L K+ EK+ +
Sbjct: 859  KIAQAQEK--IAQHQAQDLT-----LAQEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGS 911

Query: 1108 HKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQ 1166
             K+E       RD   ++  ++ ++ +E + Q  + ++N Q+ +E  +  Q + +  EQ
Sbjct: 912  TKQE-------RDRLETQLNQLRSQQQEQQWQWEKLQTNQQEYQENLTQLQTQLEALEQ 963



 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 64/372 (17%), Positives = 165/372 (44%), Gaps = 30/372 (8%)

Query: 834  YNRLVKEDPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQK 893
            YN +++ D    + +  K      +++    +F+ +I K K  L E++ +    EE+ Q 
Sbjct: 157  YNIVLQGDVTRIITMNSKERREIIDELAGVAEFDRKIVKTKETLTEVQDR----EERCQI 212

Query: 894  TVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQN 953
               ELE T + L  +++   K ++L  +V+      +KQ    V +   + +++ ++   
Sbjct: 213  IATELERTLERLAADRQKAEKYQALRQQVQ------EKQGWAKVIQYKAVEQQRQKLWGQ 266

Query: 954  LEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQ-SLIKESKLK 1012
            LE   ++ Q +Q+ + +R   ++   ++  +L  Q+  L  +     ++Q +  K  + +
Sbjct: 267  LERDREQSQQIQQALDQRSQAIQTQQTELEKLNAQVKALGEEEQLAVAAQLATQKAQRDQ 326

Query: 1013 LENEIKRLKDVINSKEEEIKSFNDKLSSSEED-LDIK----------LVTLEKNCNIAMS 1061
            L+         I + ++++     ++S S++  L I+          L  LE     +  
Sbjct: 327  LQQRYNDGDRQITNHQQQVGQIQAEISQSQQQFLHIQQEKSFHNTQTLPQLEAAVQTSQQ 386

Query: 1062 RLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKE---KIDNHKKELATFSKQ 1118
            +L+ L  +   + S +E + +E+  L+  +   + EL+  +    +++  +++L T   +
Sbjct: 387  QLEQLRHQAQAIASASEAWVQEQTQLSRTVNQLQDELIPQRSQLAQLEERQQQLLTNLAE 446

Query: 1119 RDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLND 1178
                ++   K++ EL+E +    ++    + +  +      +  + EQ++  SL++    
Sbjct: 447  LTPLLT---KVSVELEEKQFAQGQFNFQGEALTSQIQTLASDLAQLEQER--SLLQETQT 501

Query: 1179 SKIKELEARLSQ 1190
              +KE + +  Q
Sbjct: 502  RLLKEQQEKQRQ 513



 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 68/361 (18%), Positives = 158/361 (43%), Gaps = 34/361 (9%)

Query: 1426 QEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQF 1485
            +E+L E   +  QLT  L + + ++       ++ ++D+    +Q+    + I QQ+   
Sbjct: 719  EELLLERTVRSRQLTQQLMEMRQQQREAQLHGEQTERDIARLSQQQ----TQINQQQINQ 774

Query: 1486 ENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSD 1545
            +  + +LQ N   L++ +  L+Q     +   + +E  +T  + +   I  R +E     
Sbjct: 775  QQKLAELQQNLALLQQSLPPLEQQLASAQQQLTALETSQTHQQWQTIQIQIRTVE----- 829

Query: 1546 MQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNCSLKAET 1604
             + Q  L  L++ +D  K L +    L+E+++  +++ +Q+  +   L +E       + 
Sbjct: 830  AEYQRQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLAQE-------QE 882

Query: 1605 NLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYE 1664
             LK   A +   ++T    +EA+++ L ++L    +  + L  + + +   ++E   ++E
Sbjct: 883  QLKIALAEMNGAIQT----TEAQLAKLSEKLGSTKQERDRLETQLNQLRSQQQEQQWQWE 938

Query: 1665 ALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEE 1724
             L T  +  +  +  L    + LE DL      + +    L    + N +    ++ LE 
Sbjct: 939  KLQTNQQEYQENLTQLQTQLEALEQDLPDPWPEIPL----LQDRDEANLDFANILEELER 994

Query: 1725 TLQLQMEQNSRNGELVKTLQASCNGYK-DKFDDEKQKNIDLYEENQTLQKLNTDLQLQLK 1783
            ++        RNG+         N     +++  + +  +L E+ QT+    T+L L+++
Sbjct: 995  SI--------RNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELLLRIE 1046

Query: 1784 N 1784
            N
Sbjct: 1047 N 1047



 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 70/337 (20%), Positives = 146/337 (43%), Gaps = 29/337 (8%)

Query: 1426 QEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQF 1485
            Q  +N+      Q   +L+Q+    ALL + L  L++ L S ++Q   L ++  Q  QQ+
Sbjct: 764  QTQINQQQINQQQKLAELQQNL---ALLQQSLPPLEQQLASAQQQLTALETS--QTHQQW 818

Query: 1486 ENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSD 1545
            +     ++  E   +  + AL+Q E+ +K++ +  ++L+ +  Q ++ I + + +     
Sbjct: 819  QTIQIQIRTVEAEYQRQLQALRQGEDHLKDLQNSSQRLEEKIAQAQEKIAQHQAQDLTLA 878

Query: 1546 MQLQETLLELKRVQDVKKILSDDLAHLKERL-SAVEDRSQYTDEINRLKEELNCSL---- 1600
             + ++  + L  +    +     LA L E+L S  ++R +   ++N+L+ +         
Sbjct: 879  QEQEQLKIALAEMNGAIQTTEAQLAKLSEKLGSTKQERDRLETQLNQLRSQQQEQQWQWE 938

Query: 1601 KAETNLKKEFATLKYKLETSTNDSEAKISD------LLKQLDH----YTKVVEML----- 1645
            K +TN ++E+     +L+T     E  + D      LL+  D     +  ++E L     
Sbjct: 939  KLQTN-QQEYQENLTQLQTQLEALEQDLPDPWPEIPLLQDRDEANLDFANILEELERSIR 997

Query: 1646 NNEK--DAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNA 1703
            N +K  +A+        Q+YE        L  K+ ++   + EL   +   T   + S  
Sbjct: 998  NGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELLLRIENFTTLRRRSFQ 1057

Query: 1704 ALSSSTQKNKEIT-EKIKYLEETLQLQMEQNSRNGEL 1739
                +  KN +I   ++   +  LQL   ++  NG L
Sbjct: 1058 DAFDAVNKNFQIIFAELSDGDGYLQLDDAEDPFNGGL 1094


>MJAN-DSM-01-001277 MJ1254  hypothetical protein
          Length = 469

 Score = 53.9 bits (128), Expect = 5e-09
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 29/199 (14%)

Query: 998  KEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKS-------FNDKLSSSEEDL---DI 1047
            KE+ S+  I E    ++NE+  LK+ +  KEEEIK+         DKLS + ++L   D 
Sbjct: 270  KEKISKRKIIERTKNIKNELTSLKNKLKEKEEEIKNLAIKIKDLEDKLSKANKNLLNKDE 329

Query: 1048 KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAAL---NNQLKNKESELLKMKEK 1104
             +  L +  +   S++Q L+ EN   + K E+  K    L   N++LK+K  EL  + +K
Sbjct: 330  IISVLNERISEYESQIQKLLDENIIYKEKIESLNKYIETLKKENDKLKDKVRELSDIAKK 389

Query: 1105 IDNHKKELATFSKQRD-----DAVSEHGKIT----------AELKETRIQLTEYKSNYQK 1149
                K+ +       D     D + +HG IT          ++ K +RI ++E +     
Sbjct: 390  YMEEKRGVLWSFLTEDEKIIIDLIKKHGHITQKEIVEITGMSKPKVSRI-ISELEDRKII 448

Query: 1150 IKEEYSNFQRETKEQEQKK 1168
             KE+     + T  +E KK
Sbjct: 449  RKEKIGRINKLTLTEESKK 467



 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 63/262 (24%), Positives = 120/262 (45%), Gaps = 32/262 (12%)

Query: 791  DVKLNNIMIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFR--LYNRLVKEDPWFNLFI 848
            D+ LN   I  T T++ YT    I+Y  Q + +   I N  +  L   +     +  LF+
Sbjct: 215  DLSLNK-EITFTITVK-YTF---ISYPGQNIIEQPAINNNLKYLLIIAIFGTAIFGGLFV 269

Query: 849  RIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMES-------KKKFLEEKNQKTVNELENT 901
            + K  ++    + RTK    ++  LKN L+E E        K K LE+K  K    L N 
Sbjct: 270  KEK--ISKRKIIERTKNIKNELTSLKNKLKEKEEEIKNLAIKIKDLEDKLSKANKNLLNK 327

Query: 902  QDLLNQEKENLRKNESLLNRV-------KTSSETLQKQFDDLVSEKDEIS---REKLEVA 951
             ++++   E + + ES + ++       K   E+L K  + L  E D++    RE  ++A
Sbjct: 328  DEIISVLNERISEYESQIQKLLDENIIYKEKIESLNKYIETLKKENDKLKDKVRELSDIA 387

Query: 952  QNLEEAHQKIQGLQETIREREATLEKLHSKNNELI-KQISDLNCDISKEQSSQ--SLIKE 1008
            +   E  + +  L   + E E  +  L  K+  +  K+I ++   +SK + S+  S +++
Sbjct: 388  KKYMEEKRGV--LWSFLTEDEKIIIDLIKKHGHITQKEIVEIT-GMSKPKVSRIISELED 444

Query: 1009 SKLKLENEIKRLKDVINSKEEE 1030
             K+  + +I R+  +  ++E +
Sbjct: 445  RKIIRKEKIGRINKLTLTEESK 466



 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 43/191 (22%), Positives = 93/191 (48%), Gaps = 13/191 (6%)

Query: 864  KKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVK 923
            +K  E+   +KN+L  +++K K  EE+ +    ++++ +D L++  +NL   + +++ + 
Sbjct: 276  RKIIERTKNIKNELTSLKNKLKEKEEEIKNLAIKIKDLEDKLSKANKNLLNKDEIISVLN 335

Query: 924  TSSETLQKQFDDLVSEKDEISREKLE-VAQNLEEAHQKIQGLQETIREREATLEKLHSKN 982
                  + Q   L+ E + I +EK+E + + +E   ++   L++ +RE     +K   + 
Sbjct: 336  ERISEYESQIQKLLDE-NIIYKEKIESLNKYIETLKKENDKLKDKVRELSDIAKKYMEEK 394

Query: 983  N----ELIKQISDLNCDISKEQS--SQSLIKE----SKLKLENEIKRLKDVINSKEEEIK 1032
                   + +   +  D+ K+    +Q  I E    SK K+   I  L+D    ++E+I 
Sbjct: 395  RGVLWSFLTEDEKIIIDLIKKHGHITQKEIVEITGMSKPKVSRIISELEDRKIIRKEKIG 454

Query: 1033 SFNDKLSSSEE 1043
              N KL+ +EE
Sbjct: 455  RIN-KLTLTEE 464


>SCER-S28-01-001667 ORFP:YER008C  SEC3, Chr V from 167807-171817,
            reverse complement
          Length = 1336

 Score = 53.1 bits (126), Expect = 8e-09
 Identities = 99/424 (23%), Positives = 185/424 (43%), Gaps = 60/424 (14%)

Query: 1423 YKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLD-RLQKDLESTERQKELLSSTIKQQ 1481
            Y     LNE N K  +L    +Q +++   L EQ   +LQK+ E    ++E      +++
Sbjct: 316  YSSNSTLNEVN-KRYELEQQQQQEEAELRRLEEQKRLQLQKENEMKRLEEERRIKQEERK 374

Query: 1482 KQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMER 1541
            +Q        L+  E + +  + A KQ E           K + Q +++++L  ERE+  
Sbjct: 375  RQMELEHQRQLEEEERKRQMELEAKKQME----------LKRQRQFEEEQRLKKERELLE 424

Query: 1542 NDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEIN----RLKEELN 1597
                 + QET   LK+  + ++ L+      K + + V++ S YT EIN     L E+LN
Sbjct: 425  IQRKQREQETAERLKK--EEQEALAKKEEEEKSKRNKVDNES-YTQEINGKVDNLLEDLN 481

Query: 1598 CSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNE-KDAISLAE 1656
              L  ET          Y  E ST    A+  D LK+  +  KV  +  ++  D+ISL++
Sbjct: 482  AVLAEETETTPTMQNGTYVPERST----ARAHDQLKKPLNIAKVESLGGSDLNDSISLSD 537

Query: 1657 KELYQKYEALNTECESLKGKIVSLTKIKQELESDLN-QKTDALQISNAALSSSTQKNKEI 1715
                 +   LNT          +L+   Q+ ++DL+ +K D ++ SN     +     E+
Sbjct: 538  -----EIAGLNTS---------NLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEV 583

Query: 1716 T---EKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQ 1772
            +   E+   + + L L  E+N+ +  L+++          K + +  +NID     + L 
Sbjct: 584  SIIQEEAPAVSQKLILP-EENNESEALIES----------KEEIKTMENIDDEVLLEILT 632

Query: 1773 KLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLE---TDLKYEEMKKNKSLERA 1829
             +N  ++    ++ ER+     +  +L      +N++SL+    +++  E K N    R 
Sbjct: 633  DINWSIEDDADSMIERIDLRLAETEYLFN----QNLLSLQKIGPNIRPYEDKVNDECHRI 688

Query: 1830 VEEL 1833
            +  L
Sbjct: 689  IPTL 692


>SYNE-PCC-01-001071 sll1583
          Length = 562

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 69/319 (21%), Positives = 136/319 (42%), Gaps = 53/319 (16%)

Query: 817  HLQKLKKTRVIGNTFRLYNRLVKEDPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKND 876
            H   ++  + +G   +L   L++E+   NL  R+K  +   N++  T+    Q+N L   
Sbjct: 121  HYDDIQSEKFVGLQ-KLNQELLQENT--NLSDRLKQAV---NEVAETRPKLVQLNSLVTR 174

Query: 877  LQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDL 936
             Q++  +  ++E+   K +      Q L +QEK   +++E    +  + +   ++Q   L
Sbjct: 175  NQQLSDQLSYVEQNQAKAIE-----QRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQL 229

Query: 937  VSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDI 996
             +E+D++ +E       L+ A Q+ Q  Q      +A L++L  +  +   + S L   +
Sbjct: 230  TAERDQVQQE-------LQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKL 282

Query: 997  SKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNC 1056
            ++ + +Q      +L L N              E+K    KL +++ + D +L T +K  
Sbjct: 283  NQLEEAQ-----KELALAN-------------AELKV---KLETTQAEGD-RLKTEKKEQ 320

Query: 1057 NIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFS 1116
              A+   Q  VT+           ++E AAL   L   + E      ++    K +AT  
Sbjct: 321  AAALQSAQGQVTQ----------LQQELAALQENLAKAKGE---PPSEVPEKTKAVATAP 367

Query: 1117 KQRDDAVSEHGKITAELKE 1135
             Q    VS    +T E+K+
Sbjct: 368  AQEAPVVSPSPPVTVEVKQ 386



 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 31/278 (11%)

Query: 881  ESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQ---FDDLV 937
            + K + LE+  Q     LEN     NQ  EN +  E ++         LQ Q   +DD+ 
Sbjct: 74   KGKLRRLEKDLQSVQASLENALAERNQLTENYQAQEKMV-------AALQHQLAHYDDIQ 126

Query: 938  SEK----DEISREKLEVAQNLEEA-HQKIQGLQETIREREATLEKLHSKNNELIKQISDL 992
            SEK     ++++E L+   NL +   Q +  + ET R +   L  L ++N +L  Q+S +
Sbjct: 127  SEKFVGLQKLNQELLQENTNLSDRLKQAVNEVAET-RPKLVQLNSLVTRNQQLSDQLSYV 185

Query: 993  NCDISK--EQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI--- 1047
              + +K  EQ   S  K  + + E E  +     +  EE+++    +    +++L     
Sbjct: 186  EQNQAKAIEQRLASQEKLWQQRHEQEQAQWNSQASQWEEQVRQLTAERDQVQQELQTARQ 245

Query: 1048 ---KLVTLEKNCNIAMSRL----QSLVTENSDLRSKN---ENFKKEKAALNNQLKNKESE 1097
                  T  +N   A+ RL    +    E S L +K    E  +KE A  N +LK K   
Sbjct: 246  QSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELALANAELKVKLET 305

Query: 1098 LLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKE 1135
                 +++   KKE A   +     V++  +  A L+E
Sbjct: 306  TQAEGDRLKTEKKEQAAALQSAQGQVTQLQQELAALQE 343



 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 47/242 (19%), Positives = 104/242 (42%), Gaps = 28/242 (11%)

Query: 957  AHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENE 1016
            A  K++ L++ ++  +A+LE   ++ N+L +            Q+ + ++      L+++
Sbjct: 73   AKGKLRRLEKDLQSVQASLENALAERNQLTENY----------QAQEKMVAA----LQHQ 118

Query: 1017 IKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKL---VTLEKNCNIAMSRLQSLVTENSDL 1073
            +    D+ + K   ++  N +L     +L  +L   V         + +L SLVT N  L
Sbjct: 119  LAHYDDIQSEKFVGLQKLNQELLQENTNLSDRLKQAVNEVAETRPKLVQLNSLVTRNQQL 178

Query: 1074 RSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAEL 1133
              +    ++ +A    Q    + +L + +     H++E A ++ Q      +  ++TAE 
Sbjct: 179  SDQLSYVEQNQAKAIEQRLASQEKLWQQR-----HEQEQAQWNSQASQWEEQVRQLTAER 233

Query: 1134 KETRIQLTEYKSNYQKIKEEYSNFQR------ETKEQEQKKRNSLVESLNDSKIKELEAR 1187
             + + +L   +   Q  + +  N Q       + +EQ Q +R+ L   LN  +  + E  
Sbjct: 234  DQVQQELQTARQQSQSAQTQAENLQAALDRLGQQEEQWQGERSQLTAKLNQLEEAQKELA 293

Query: 1188 LS 1189
            L+
Sbjct: 294  LA 295


>SYNE-PCC-01-000943 sll1424
          Length = 491

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 42/184 (22%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 869  QINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSET 928
            Q+   K +L++    K+ +E +      E +  Q+   +   N  K   LL RV   S  
Sbjct: 84   QLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKALQLLRRVSEQSRN 143

Query: 929  LQKQFDDLVSE-------KDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSK 981
            L+++  +L +E       KD +  E  E+   ++   Q++   QE I ++E  L +   +
Sbjct: 144  LRQEVANLSAERAQLNEQKDSLLAESSELQSQVKLRDQELSKRQERIAQQEKVLARQREQ 203

Query: 982  NNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSS 1041
               L K+ + L    ++ Q  Q+ I +   K++    +L   I +K+ +I++  +KL   
Sbjct: 204  VQSLEKRFASLE---AQRQQLQAEINQRDTKID----QLDQAIAAKDNDIQAREEKLQGL 256

Query: 1042 EEDL 1045
            E +L
Sbjct: 257  ETEL 260



 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 50/212 (23%), Positives = 101/212 (47%), Gaps = 16/212 (7%)

Query: 1532 KLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINR 1591
            K + E   + +D   QL+    EL++    K+ +  +L  ++E    V++RS+   E+NR
Sbjct: 69   KSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSR---ELNR 125

Query: 1592 ----LKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEM-LN 1646
                  + L    +   NL++E A L  +     N+ +  +     +L    K+ +  L+
Sbjct: 126  NYTKALQLLRRVSEQSRNLRQEVANLSAE-RAQLNEQKDSLLAESSELQSQVKLRDQELS 184

Query: 1647 NEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ---KTDALQISNA 1703
              ++ I+  EK L ++ E    + +SL+ +  SL   +Q+L++++NQ   K D L  + A
Sbjct: 185  KRQERIAQQEKVLARQRE----QVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIA 240

Query: 1704 ALSSSTQKNKEITEKIKYLEETLQLQMEQNSR 1735
            A  +  Q  +E  + ++     LQ ++E+  R
Sbjct: 241  AKDNDIQAREEKLQGLETELSFLQREVEELER 272



 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 35/203 (17%), Positives = 94/203 (46%), Gaps = 5/203 (2%)

Query: 984  ELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEE 1043
            E + Q+ D+   +   ++      ++K ++E+E+  +++     +E  +  N   + +  
Sbjct: 73   EGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQERSRELNRNYTKA-- 130

Query: 1044 DLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKE 1103
             L +     E++ N+    + +L  E + L  + ++   E + L +Q+K ++ EL K +E
Sbjct: 131  -LQLLRRVSEQSRNLRQE-VANLSAERAQLNEQKDSLLAESSELQSQVKLRDQELSKRQE 188

Query: 1104 KIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKE 1163
            +I   +K LA   +Q          + A+ ++ + ++ +  +   ++ +  +    + + 
Sbjct: 189  RIAQQEKVLARQREQVQSLEKRFASLEAQRQQLQAEINQRDTKIDQLDQAIAAKDNDIQA 248

Query: 1164 QEQKKRNSLVE-SLNDSKIKELE 1185
            +E+K +    E S    +++ELE
Sbjct: 249  REEKLQGLETELSFLQREVEELE 271



 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 45/214 (21%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 1672 SLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQME 1731
            S  G + + +K  +E    L+     L+++   L  ++Q  +EI  ++  + E  QL  E
Sbjct: 59   STLGILFTFSKSLREGVFQLDDILAQLRVAKTELEQASQAKEEIESELTAVREEQQLVQE 118

Query: 1732 QN---SRNG----ELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKN 1784
            ++   +RN     +L++ +       + +  +   +   L E+  +L   +++LQ Q+K 
Sbjct: 119  RSRELNRNYTKALQLLRRVSEQSRNLRQEVANLSAERAQLNEQKDSLLAESSELQSQVKL 178

Query: 1785 LHERLSDTTEKNAWLSKI--HELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTD 1842
              + LS   E+ A   K+   + E + SLE      E ++ + L+  + +  TK  Q   
Sbjct: 179  RDQELSKRQERIAQQEKVLARQREQVQSLEKRFASLEAQR-QQLQAEINQRDTKIDQLDQ 237

Query: 1843 VIELANKNRSEFEEATLKYEAQISDLEKYISQQE 1876
             I   + +    EE     E ++S L++ + + E
Sbjct: 238  AIAAKDNDIQAREEKLQGLETELSFLQREVEELE 271


>SCER-S28-01-002584 ORFP:YHL009W-B  YHL009W-B, Chr VIII from
            85904-86989,86991-91313
          Length = 1802

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 68/342 (19%), Positives = 146/342 (42%), Gaps = 44/342 (12%)

Query: 865  KFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKT 924
            K++E+++++ + +QE     K +  KN   +N+     D +  +      N  L   V  
Sbjct: 1000 KYDEKVHRIPSIIQE-----KLVGSKNTIKINDENRISDRIRSKNIGSILNTGLSRCVDI 1054

Query: 925  SSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLE-KLHSKNN 983
            + E++  + + + + K E+ +E+     N E +  K   +   ++ R    E  L + + 
Sbjct: 1055 TDESITNKDESMHNAKPELIQEQFN-KTNHETSFPKEGSIGTNVKFRNTDNEISLKTGDT 1113

Query: 984  EL-IKQISDLNCDISKEQSSQSLIKESKLKLEN-EIKRLKDVINSKEEEIKSFNDKLSSS 1041
             L IK +  +N   S + S+    K  K + EN     ++D+++  ++     N +  ++
Sbjct: 1114 SLPIKTLESINNHHSNDYSTN---KVEKFEKENHHPPPIEDIVDMSDQTDMESNCQDGNN 1170

Query: 1042 EEDLDI--KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELL 1099
             ++L +  K V  +   N++    Q++    S +++ N+          +   NKE   L
Sbjct: 1171 LKELKVTDKNVPTDNGTNVSPRLEQNIEASGSPVQTVNK----------SAFLNKEFSSL 1220

Query: 1100 KMKEKIDNHKK--ELATFSKQRDDAVSEHGKI--------TAELKETR-IQLTEYKSNYQ 1148
             MK K   H K   L ++  +RD   S+  ++        T   ++ R I   E  S   
Sbjct: 1221 NMKRKRKRHDKNNSLTSYELERDKKRSKRNRVKLIPDNMETVSAQKIRAIYYNEAISKNP 1280

Query: 1149 KIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQ 1190
             +KE++   Q   KE         +++L D K+ +++ + S+
Sbjct: 1281 DLKEKHEYKQAYHKE---------LQNLKDMKVFDVDVKYSR 1313


  Database: tst.fasta
    Posted date:  Jan 29, 2007 10:10 AM
  Number of letters in database: 48,235
  Number of sequences in database:  78
  
Lambda     K      H
   0.311    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,522
Number of Sequences: 78
Number of extensions: 10989
Number of successful extensions: 506
Number of sequences better than 1.0e-05: 12
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 121
length of query: 1928
length of database: 48,235
effective HSP length: 77
effective length of query: 1851
effective length of database: 42,229
effective search space: 78165879
effective search space used: 78165879
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 100 (43.1 bits)
