#!/bin/bash
set -e

CUR_DIR=`pwd`
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cd "${AUTOPKGTEST_TMP}"
cp ${CUR_DIR}/performanceAndComparisonCMDs.tar.gz .
tar -xzvf *.tar.gz
cd benchmarkCMDs

echo "Simple test to check indexing function"
kma index -i ResFinder.fasta -o ResFinder
for f in ResFinder.*
do
	[ -s $f ] || exit 1
done

echo "Clean up ..."
cd ..
rm -rf benchmarkCMDs/ *.tar.gz
echo "PASS"
