#!/bin/bash
set -e

pkg=codonw

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"
gunzip -r *

echo 'Test 1'
codonw input.dat  -all_indices -human  -c_type 2 -f_type 4 -nomenu -silent
echo 'PASS'

echo 'Test 2'
codonw input.dat -coa_cu  -nomenu -silent
echo 'PASS'

echo 'Test 3'
codonw input.dat  -fop_file fop.coa -nomenu -silent
echo 'PASS'

echo 'Test 4'
codonw input.dat -cai_file cai.coa -cbi_file cbi.coa -nomenu -silent
echo 'PASS'

echo 'Test 5'
codonw input.dat -all_indices -nomenu -silent
echo 'PASS'
