Author: Michael R. Crusoe <crusoe@debian.org>
Description: Use the libfast5-dev package
Forwarded: not-needed
--- uncalled.orig/Makefile
+++ uncalled/Makefile
@@ -10,7 +10,7 @@
 BWA_INCLUDE=-I/usr/include/bwa
 
 LIBS=$(HDF5_LIB) $(BWA_LIB) -lstdc++ -lz -ldl -pthread -lm 
-INCLUDE=-I submods/ -I submods/toml11 -I submods/fast5/include -I submods/pybind11/include -I submods/pdqsort $(HDF5_INCLUDE) $(BWA_INCLUDE)
+INCLUDE=-I submods/ -I submods/toml11 -I/usr/include/fast5/ -I submods/pybind11/include -I submods/pdqsort $(HDF5_INCLUDE) $(BWA_INCLUDE)
 
 SRC=src
 BUILD=build
--- uncalled.orig/setup.py
+++ uncalled/setup.py
@@ -102,7 +102,7 @@
     include_dirs = [
         "./submods", #TODO: consistent incl paths?
         subprocess.check_output("pkg-config  --cflags hdf5-serial | sed 's/-I//'", shell=True, encoding='UTF-8').strip(), 
-        "./submods/fast5/include",
+        "/usr/include/fast5/",
         "./submods/pdqsort",
         "./submods/toml11",
         get_pybind_include()
