org=Caenorhabditis elegans
genes=hgdownload.cse.ucsc.edu/goldenPath/ce10/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/ce10/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/CAEEL_6239_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/CAEEL.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/ce10/bigZips/chromFa.tar.gz

org=Danio rerio (Zebrafish)
genes=hgdownload.cse.ucsc.edu/goldenPath/danRer7/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/danRer7/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/DANRE_7955_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/DANRE.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr1.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr2.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr3.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr4.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr5.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr6.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr7.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr8.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr9.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr10.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr11.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr12.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr13.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr14.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr16.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr17.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr18.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr19.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr20.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr21.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr22.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr23.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr24.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chr25.fa.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/danRer6/chromosomes/chrM.fa.gz

org=Drosophila melanogaster (Fruit fly)
genes=hgdownload.cse.ucsc.edu/goldenPath/dm3/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/dm3/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/DROME_7227_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/DROME.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/dm3/bigZips/chromFa.tar.gz

org=Gallus gallus (Chicken)
genes=hgdownload.cse.ucsc.edu/goldenPath/galGal3/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/galGal3/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/CHICK_9031_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/CHICK.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/galGal3/bigZips/chromFa.tar.gz

org=Homo sapiens (Human)
genes=hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGenePep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/HUMAN.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz

org=Mus musculus (Mouse)
genes=hgdownload.cse.ucsc.edu/goldenPath/mm10/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/mm10/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/MOUSE_10090_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/MOUSE.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/mm10/bigZips/chromFa.tar.gz

org=Rattus norvegicus (Rat)
genes=hgdownload.cse.ucsc.edu/goldenPath/rn4/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/rn4/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/RAT_10116_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/RAT.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/rn4/bigZips/chromFa.tar.gz

org=Saccharomyces cerevisiae (Yeast)
genes=hgdownload.cse.ucsc.edu/goldenPath/sacCer3/database/ensGene.txt.gz
aaseqs=hgdownload.cse.ucsc.edu/goldenPath/sacCer3/database/ensPep.txt.gz
idmappings=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/YEAST_559292_idmapping_selected.tab.gz
prots=ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/proteomes/YEAST.fasta.gz
chroms=hgdownload.cse.ucsc.edu/goldenPath/sacCer3/bigZips/chromFa.tar.gz